Citrus Sinensis ID: 007010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
Protein Sequence
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEEEEccccccEEEEEcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEccccccEEccccccccccEEEEccccHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHcHHHHHHHcHHcccHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccEEEcHHHHHHHccccEEccccccHHHHHHHHHHHcccEEEEEcccEEEEEEEcccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHcccccccccHcHccccccccccccccccccHHHHHHHcccccccccEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccccccEcccHHHHHHHHHHHHHHHHHHccccHHHHEEEEEcccEEEEEEEccccEEEEcccccccEEEEEEcccHHHHHHHHHHHcccHHHHHcccEEccccccHHHHHHHHccHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEEEEEEEccccccccHHEEEHHcccccHHHHHHcccHHHHHHHccccccccEcccccccccccHHHHHHHcccccccEEEEEHHHHHHHHHHEEEcccccccccccccccccEEEEEEcccccccEEEcccccEEEEEEEccccccccccEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHccccccEEEEEcccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msgdkrrawadttplldqkhrssispiyntnriSYAAGGLLemayatapparsrsvflgvdvgtgsaraglfdesgkllgsasspiqiwkegdcieqsSTDIWHAICAAVDSACslanvdgeevkgvgFAATCSLvavdadgspvsvswngdsrrNIIVWMDHRAVKQAekinsrnspvlqycggavspemqppklLWVKENLQESWSMVFRWMDLSdwlsyratgddtrsLCTTVCKWTYLGHAHMQQMNEKGFrdmeacgwddefweeiglgdlidghhakigrsvafpghplgsgltpaaakelglvpgtpvgtslidahaggvgvmesvpesvsEAKENEEEAICHRMVLVCgtstchmavsrnklfipgvwgpfwsamvpkfwlteggqsatGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESmihernspfvaALTEDihvlpdfhgnrspiadpkskgiicgmtLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLacgglaknplflqqhadiigcpiilprenesVLLGAAILGAVAAKRYSSLIEAMKAMNAagqvihpskdpkvkkyhdAKYLIFRELFEQQVSQRSIMAQALA
Flexible Loop (DISEMBL)
msgdkrrawadttplldqkhrssispiyntNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAvdadgspvsvswngdsrrnIIVWMDHRAVKQaekinsrnspVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAgqvihpskdpkvkkYHDAKYLIFRELFEQQVSQRSIMAQALA
Low Complexity Region (SEG)
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPesvseakeneeeaICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVasrslanraasrHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESvllgaailgavaaKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Disordered region (IsUnstruct)
***********************ISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV*****************AICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIA**KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIH*****KVKKYHDAKYLIFRELFE**************
Disordered Region (DISOPRED)
**************LL***************************************VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM*********AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL*
Disordered Region (DISEMBL)
*********ADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM**************EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Disordered Region (DISPRO)
**********DTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	621	2.2.26 [Sep-21-2011]
Q6DCD1	550	FGGY carbohydrate kinase	N/A	no	0.861	0.972	0.482	1e-150
A2AJL3	552	FGGY carbohydrate kinase	yes	no	0.861	0.969	0.489	1e-150
Q96C11	551	FGGY carbohydrate kinase	yes	no	0.869	0.980	0.485	1e-149
Q6NUW9	545	FGGY carbohydrate kinase	yes	no	0.863	0.983	0.459	1e-135
Q04585	715	Uncharacterized sugar kin	yes	no	0.859	0.746	0.373	1e-100
Q65GC1	552	Ribulokinase OS=Bacillus	yes	no	0.814	0.916	0.269	4e-42
P94524	560	Ribulokinase OS=Bacillus	yes	no	0.822	0.912	0.266	3e-40
Q8NXY1	545	Ribulokinase OS=Staphyloc	yes	no	0.756	0.862	0.269	4e-40
Q6GBT5	545	Ribulokinase OS=Staphyloc	yes	no	0.756	0.862	0.269	4e-40
Q49V87	542	Ribulokinase 2 OS=Staphyl	yes	no	0.774	0.887	0.263	6e-40

>sp|Q6DCD1|FGGY_XENLA FGGY carbohydrate kinase domain-containing protein OS=Xenopus laevis GN=fggy PE=2 SV=2

 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/566 (48%), Positives = 368/566 (65%), Gaps = 31/566 (5%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++G+DVGT S R  L D+ G ++      I+IW+ + D  EQSS DIW A C        
Sbjct: 11  YVGIDVGTASVRVALVDQFGTVVDQVEQSIKIWEPQPDHYEQSSDDIWAACCQVTKQV-- 68

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           +   D   ++G+GF ATCSLV +D    P++V+  G+ +RNII+WMDHRA  Q ++IN  
Sbjct: 69  VRTKDPRCIRGLGFDATCSLVVLDTQFQPLAVNSQGEHKRNIIMWMDHRAGCQVDRINRT 128

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENL-QESWSMVFRWMDLSDWLSYRATGDDTRSLCT 234
           N  VL+Y GG +S EMQPPKLLW+KENL +E W+   +  DL D+L+++ATGD+TRS CT
Sbjct: 129 NHKVLRYVGGVMSVEMQPPKLLWLKENLREECWNKSGQLFDLPDFLTWKATGDNTRSFCT 188

Query: 235 TVCKWTY-LGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
            VCKWTY L H                 GWDD FW+EIGL D+ +G++ KIG  V  PG 
Sbjct: 189 LVCKWTYSLDH-----------------GWDDSFWKEIGLEDICEGNYVKIGNQVMSPGA 231

Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSE-AKENEEEAICHRM 352
            +G+ LT  AAKELGL  G PV  SLIDAHAGG+GV+ +   S+ E   E E   I  R+
Sbjct: 232 SIGNCLTATAAKELGLPEGLPVAASLIDAHAGGLGVIGA---SLKEYGLEGENHPITSRL 288

Query: 353 VLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASR 412
            L+CGTS+CHM +S   +F+PGVWGP++SAM+P  WL EGGQSATG L+D+++  H+A  
Sbjct: 289 ALICGTSSCHMGISEKPIFVPGVWGPYYSAMIPGLWLNEGGQSATGKLIDHVVHGHIAFM 348

Query: 413 SLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKG 472
            L N+A +R   ++  LN  L+ +   + S  V  L  D+HV PDFHGNRSP+AD   KG
Sbjct: 349 ELENQAKARGQHIYTYLNNHLDKI---KKSGPVGFLAADLHVWPDFHGNRSPLADLTMKG 405

Query: 473 IICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ 532
           ++ G+TL  S   LA LYLAT+Q IA GTRHI+E     GH I TL  CGGL+KNPLF+Q
Sbjct: 406 MVVGLTLSKSLDDLATLYLATIQAIALGTRHILETMQTAGHHISTLYLCGGLSKNPLFVQ 465

Query: 533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK 592
            HADI G P++L +E ESVL+GAAILGA A+  + S+ EAM+ M+  G++I P+ +   K
Sbjct: 466 MHADITGLPVVLSKEVESVLVGAAILGACASGDFPSIKEAMEKMSKVGKIIFPNHED--K 523

Query: 593 KYHDAKYLIFRELFEQQVSQRSIMAQ 618
           +++D KY +F +L   Q   ++IM +
Sbjct: 524 RFYDKKYEVFLKLSSHQKEYQAIMGR 549

Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp|A2AJL3|FGGY_MOUSE FGGY carbohydrate kinase domain-containing protein OS=Mus musculus GN=Fggy PE=2 SV=1

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/562 (48%), Positives = 365/562 (64%), Gaps = 27/562 (4%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++G+DVGTGS RA L D+ G LL  A  PI+ W+ + +  EQSS DIW A C        
Sbjct: 13  YVGIDVGTGSVRAALVDQRGLLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCLVTKEV-- 70

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           +  +D   ++G+GF ATCSLV +D +  P+ V+  GDS RN+I+W+DHRAV Q  +IN  
Sbjct: 71  VQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNHEGDSSRNVIMWLDHRAVSQVHRINET 130

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENLQE-SWSMVFRWMDLSDWLSYRATGDDTRSLCT 234
              VLQY GG +S EMQ PKLLW+KENL+E  W     + DL D+LS++ATG   RSLC+
Sbjct: 131 KHRVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCS 190

Query: 235 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 294
            VCKWTY          EKG        WDD FW+ IGL DLID +++KIG  V  PG  
Sbjct: 191 LVCKWTYSA--------EKG--------WDDSFWKMIGLEDLIDDNYSKIGNLVLLPGAA 234

Query: 295 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVL 354
           LG GLTP AA+ELGL  G  V  SLIDAHAGG+GV+ +  +        E + +  R+ +
Sbjct: 235 LGIGLTPEAARELGLPSGIAVAASLIDAHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAV 292

Query: 355 VCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSL 414
           +CGTS+CHM +S++ +F+PGVWGP++SAMVP FWL EGGQS TG L+D++++ H A   L
Sbjct: 293 ICGTSSCHMGISKDPVFVPGVWGPYYSAMVPGFWLNEGGQSVTGKLIDHMVQGHPAFPEL 352

Query: 415 ANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII 474
             +A +R  S++  LN  L+ +   + +  V  LT D+HV PDFHGNRSP+AD   KG++
Sbjct: 353 QAKATARCQSIYAYLNSHLDLI---KKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMV 409

Query: 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQH 534
            G+TL      LA+LYLATVQ IA+GTR I+E   A GH + TL  CGGL+KNPLF+Q H
Sbjct: 410 TGLTLSQDLDDLAILYLATVQAIAFGTRFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMH 469

Query: 535 ADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY 594
           ADI G P++L +E ESVL+GAAILGA A+  ++S+ EAM  M+  G+V+ P      KKY
Sbjct: 470 ADITGMPVVLSQEVESVLVGAAILGACASGDFTSVQEAMARMSKVGKVVFPEHAD--KKY 527

Query: 595 HDAKYLIFRELFEQQVSQRSIM 616
           +D KY +F  + E Q    +IM
Sbjct: 528 YDKKYQVFLRMVEHQKEYSAIM 549

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q96C11|FGGY_HUMAN FGGY carbohydrate kinase domain-containing protein OS=Homo sapiens GN=FGGY PE=1 SV=2

 Score =  530 bits (1364), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/567 (48%), Positives = 368/567 (64%), Gaps = 27/567 (4%)

Query: 52  RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAV 110
           +    ++GVDVGTGS RA L D+SG LL  A  PI+ W+ + +  EQSS DIW A C   
Sbjct: 7   KPERYYVGVDVGTGSVRAALVDQSGVLLAFADQPIKNWEPQFNHHEQSSEDIWAACCVVT 66

Query: 111 DSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
                +  +D  +++G+GF ATCSLV +D    P+ V+  GDS RN+I+W+DHRAV Q  
Sbjct: 67  KKV--VQGIDLNQIRGLGFDATCSLVVLDKQFHPLPVNQEGDSHRNVIMWLDHRAVSQVN 124

Query: 171 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQE-SWSMVFRWMDLSDWLSYRATGDDT 229
           +IN     VLQY GG +S EMQ PKLLW+KENL+E  W     + DL D+LS++ATG   
Sbjct: 125 RINETKHSVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTA 184

Query: 230 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289
           RSLC+ VCKWTY          EKG        WDD FW+ IGL D +  +++KIG  V 
Sbjct: 185 RSLCSLVCKWTYSA--------EKG--------WDDSFWKMIGLEDFVADNYSKIGNQVL 228

Query: 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 349
            PG  LG+GLTP AA++LGL+PG  V  SLIDAHAGG+GV+ +  +        E + + 
Sbjct: 229 PPGASLGNGLTPEAARDLGLLPGIAVAASLIDAHAGGLGVIGA--DVRGHGLICEGQPVT 286

Query: 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 409
            R+ ++CGTS+CHM +S++ +F+PGVWGP++SAMVP FWL EGGQS TG L+D++++ H 
Sbjct: 287 SRLAVICGTSSCHMGISKDPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHA 346

Query: 410 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 469
           A   L  +A +R  S++  LN  L+ +  ++  P V  LT D+HV PDFHGNRSP+AD  
Sbjct: 347 AFPELQVKATARCQSIYAYLNSHLDLI--KKAQP-VGFLTVDLHVWPDFHGNRSPLADLT 403

Query: 470 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 529
            KG++ G+ L      LA+LYLATVQ IA GTR I+E   A GH I TL  CGGL+KNPL
Sbjct: 404 LKGMVTGLKLSQDLDDLAILYLATVQAIALGTRFIIEAMEAAGHSISTLFLCGGLSKNPL 463

Query: 530 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP 589
           F+Q HADI G P++L +E ESVL+GAA+LGA A+  ++S+ EAM  M+  G+V+ P    
Sbjct: 464 FVQMHADITGMPVVLSQEVESVLVGAAVLGACASGDFASVQEAMAKMSKVGKVVFPRLQD 523

Query: 590 KVKKYHDAKYLIFRELFEQQVSQRSIM 616
             KKY+D KY +F +L E Q    +IM
Sbjct: 524 --KKYYDKKYQVFLKLVEHQKEYLAIM 548

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q6NUW9|FGGY_DANRE FGGY carbohydrate kinase domain-containing protein OS=Danio rerio GN=fggy PE=2 SV=2

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/562 (45%), Positives = 353/562 (62%), Gaps = 26/562 (4%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVG+ S RA L    G+L  +A  PI + +   D  EQSST+IW   C  V     
Sbjct: 6   YVGVDVGSASVRAALVSPDGQLRRTAEEPIAVHEPCVDHYEQSSTEIWSKCCQTVKRVTE 65

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
              VD   V+G+GF  TCSLV +D    P++V+  G   RN+++WMDHRA  QA +I + 
Sbjct: 66  --GVDAACVRGIGFDGTCSLVVLDQQFRPLAVNLAGVCDRNVVMWMDHRAAAQASRITAC 123

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENLQES-WSMVFRWMDLSDWLSYRATGDDTRSLCT 234
              +LQ  GG +SPE+QPPKLLW+KENL +S W+    + DL D+LS++ATG  +RSLCT
Sbjct: 124 RHTLLQRVGGVMSPEIQPPKLLWLKENLPDSCWTRAAHFFDLPDFLSWKATGSLSRSLCT 183

Query: 235 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 294
            VCKWTY                    GWDD FW  IGL DLI+  +A+IG  V  PG  
Sbjct: 184 LVCKWTYSASE----------------GWDDTFWSAIGLEDLIEDSYARIGSQVCCPGAA 227

Query: 295 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVL 354
           +G GLT AAA +LGL  GT VG SLIDAHAGG+GV+ +    +      E + +  RM L
Sbjct: 228 VGRGLTAAAAADLGLNEGTAVGASLIDAHAGGIGVLGADVSGLH--LPCEHQPLTARMAL 285

Query: 355 VCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSL 414
           +CGTS+CHMAVSR  L +PGVWGP+ SAM+P  WL EGGQSATG LLD++++ H A R L
Sbjct: 286 ICGTSSCHMAVSREPLLVPGVWGPYLSAMLPGLWLNEGGQSATGKLLDHVVKGHAAFRQL 345

Query: 415 ANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII 474
             +A      ++  LN  L+ M    ++  +  LT  +H+ PDFHGNRSP+AD  ++G +
Sbjct: 346 EEQAEHSGRHIYTQLNLHLQQM--STDATHLEQLTTHLHIWPDFHGNRSPLADQTARGTV 403

Query: 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQH 534
            G++L  +   LALLYLAT+Q +A G+RHI+      GH I TL  CGGL+KN LF+Q H
Sbjct: 404 VGLSLSQTLDDLALLYLATLQALALGSRHIIAAMTEAGHDITTLFLCGGLSKNTLFVQTH 463

Query: 535 ADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY 594
           A+  G P++LP E E+VLLGAA++GA A+   +S+ EAM+ M+  G+V+ P  +P+++ +
Sbjct: 464 ANTTGLPVVLPAEREAVLLGAAVIGACASSDCTSIPEAMRKMSRVGRVVRP--NPELQSF 521

Query: 595 HDAKYLIFRELFEQQVSQRSIM 616
           +  KY +F  L++ Q    S+M
Sbjct: 522 YRRKYSVFLRLYQHQKECVSLM 543

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q04585|YDR09_YEAST Uncharacterized sugar kinase YDR109C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR109C PE=1 SV=1

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 322/565 (56%), Gaps = 31/565 (5%)

Query: 48  APPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAI 106
           +P       ++GVDVGTGSARA + D+SG +L  A  PI+  +   + I QSS +IW+A+
Sbjct: 31  SPQDPEAKFYVGVDVGTGSARACVIDQSGNMLSLAEKPIKREQLISNFITQSSREIWNAV 90

Query: 107 CAAVDSACSLANVDGEEVKGVGFAATCSLVAVDA-DGSPVSVSWN-GDSRRNIIVWMDHR 164
           C  V +    + VD E V+G+GF ATCSLV V A +   ++V  +  ++ +NII+WMDHR
Sbjct: 91  CYCVRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEEIAVGPDFTNNDQNIILWMDHR 150

Query: 165 AVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 224
           A+K+ E+INS     L+Y GG +S EM+ PK+ W+K NL+       ++ DL D+L+++A
Sbjct: 151 AMKETEEINSSGDKCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYLTFKA 210

Query: 225 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 284
           TG + RS C+ VCK  +L       +  +G       GW  EF   IGL +L      ++
Sbjct: 211 TGKENRSFCSAVCKQGFL------PVGVEG----SDIGWSKEFLNSIGLSELTKNDFERL 260

Query: 285 GRSVAFPGHPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESV-- 337
           G S+    + L +G     L   AA +LGL     V + +IDA+AG VG + + PES   
Sbjct: 261 GGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVK 320

Query: 338 ----SEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 393
               +E  + +      R+  V GTSTCH+ +S+N +F+ GVWGP+   +   FW  EGG
Sbjct: 321 GLAETENYKKDFNGAIGRLAAVAGTSTCHILLSKNPIFVHGVWGPYRDVLARGFWAAEGG 380

Query: 394 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453
           QS TG LLD++I  H A   L++ A    VS FE LN  LE+++ +R    V +L + + 
Sbjct: 381 QSCTGVLLDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLF 440

Query: 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH 513
              D+HGNRSPIADP  +  I G ++D+S + LA++YL+  + I+  TR I+E     GH
Sbjct: 441 FYGDYHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGH 500

Query: 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILGAVAAKRYSSLIEA 572
           +I+ +   GG  +N L ++  AD  G PI++PR  + +V+ G+A+LGA A++ +    E 
Sbjct: 501 EINAIFMSGGQCRNSLLMRLLADCTGLPIVIPRYVDAAVVFGSALLGAAASEDFDYTRE- 559

Query: 573 MKAMNAAGQVIHPSKDPKVKKYHDA 597
                  GQ    S   K ++++D+
Sbjct: 560 --KRTLKGQ---KSSQTKTERFNDS 579

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q65GC1|ARAB_BACLD Ribulokinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=araB PE=3 SV=1

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 156/579 (26%), Positives = 255/579 (44%), Gaps = 73/579 (12%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLAN 118
           VDV TG   A    E    +     P+   K   D   Q   D    +   + S    + 
Sbjct: 8   VDVRTGEEIATAVKEYTHGVIDRELPVSKRKLPRDWALQHPADYIEVLEETIPSLLKQSK 67

Query: 119 VDGEEVKGVGFAAT-CSLVAVDADGSPVSV--SWNGDSRRNIIVWMDHRAVKQAEKINS- 174
            D +E+ G+G   T C+++ VD +G+P+ +   +  +    + +W  H A +QA ++N  
Sbjct: 68  ADPKEIIGIGIDFTACTILPVDENGTPLCMREEYASEPHSYVKLWKHHAAQEQANRLNQI 127

Query: 175 ---RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 231
              RN P LQ  GG +S E   PK++ + E   + +      M+ +DW+ Y   G   R+
Sbjct: 128 AEERNEPFLQTYGGKISSEWLVPKVMQIAEEAPDIYDAAAEIMEAADWIVYMLCGTRKRN 187

Query: 232 LCTTVCK--WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLGDLIDGHHAKIGRS 287
            CT   K  W           N+ G+         D+F+  +   L +++     K+   
Sbjct: 188 NCTAGYKAIWN----------NKSGYPS-------DDFFASLHPKLKNIV---REKLTED 227

Query: 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEE 345
           +   G   G GLT   A + GL+ GT V  + +DAH     VG+ E              
Sbjct: 228 IYSVGEKAG-GLTEEMAGKTGLLAGTAVAVANVDAHVSVPAVGITEP------------- 273

Query: 346 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 405
                +M+++ GTSTCHM +  +   +PG+ G     ++P +   E GQS  G    ++I
Sbjct: 274 ----GKMLMIMGTSTCHMLLGEDVRMVPGMCGVVEDGILPGYVGYEAGQSCVGDHFHWLI 329

Query: 406 ENHVASRSLANRAASRHVSLFELLNGTLESM-IHERNSPFVAALTEDIHVLPDFHGNRSP 464
           + H    +    A +  +S++ELL+    S+ I E            +  L  ++GNRS 
Sbjct: 330 Q-HFVPEAYLKEAEAEGISIYELLSQKAGSLQIGESG----------LLALDWWNGNRST 378

Query: 465 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL 524
           + D    G++ GMTL +  ++   +Y A V+  AYGTR I+E     G  I+ L A GG+
Sbjct: 379 LVDADLTGMLLGMTLATKPEE---IYRALVEATAYGTRIIIETFRQSGVPIEELYAAGGI 435

Query: 525 A-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR----YSSLIEAMKAMNAA 579
           A KNP  +Q +AD+    I +    ++  LG+AI GA+AA      Y  + EA+  M   
Sbjct: 436 AEKNPFIMQVYADVTNMEIKISGSPQAPALGSAIFGALAAGSMNGGYDHIEEAVAHMGKI 495

Query: 580 GQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 618
               +      V  Y D  Y  ++EL+     Q ++M +
Sbjct: 496 KDKTYKPIPENVSLY-DQLYAEYKELYTYFGKQNNVMKR 533

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P94524|ARAB_BACSU Ribulokinase OS=Bacillus subtilis (strain 168) GN=araB PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 265/590 (44%), Gaps = 79/590 (13%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQ-------IWKEG-----DCIEQSSTDIWH 104
           +GVD GT S RA L   ++G+ L +A    +       + K G     D   Q   D   
Sbjct: 5   IGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQKLPRDWALQHPADYLE 64

Query: 105 AICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSV--SWNGDSRRNIIVWM 161
            +   + S      VD +++ G+G   T C+++ +D+ G P+ +   +  +    + +W 
Sbjct: 65  VLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQPLCMLPEYEEEPHSYVKLWK 124

Query: 162 DHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 217
            H A K A+++N          LQ  GG +S E   PK++ + E     +    R ++ +
Sbjct: 125 HHAAQKHADRLNQIAEEEGEAFLQRYGGKISSEWMIPKVMQIAEEAPHIYEAADRIIEAA 184

Query: 218 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM--EACGW-DDEFWEEIGLG 274
           DW+ Y+  G   RS CT                   G++ M  E  G+  D+F+E++   
Sbjct: 185 DWIVYQLCGSLKRSNCTA------------------GYKAMWSEKAGYPSDDFFEKLN-P 225

Query: 275 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMES 332
            +      K+  S+   G   GS LT   AK  GL+PGT V  + +DAH     VG+ E 
Sbjct: 226 SMKTITKDKLSGSIHSVGEKAGS-LTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEP 284

Query: 333 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 392
                             +M+++ GTSTCH+ +      +PG+ G   + ++P +   E 
Sbjct: 285 -----------------GKMLMIMGTSTCHVLLGEEVHIVPGMCGVVDNGILPGYAGYEA 327

Query: 393 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452
           GQS  G   D+ ++  V   +    A  +++ + ELL+   E   H+  +P  + L    
Sbjct: 328 GQSCVGDHFDWFVKTCVPP-AYQEEAKEKNIGVHELLS---EKANHQ--APGESGLL--- 378

Query: 453 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG 512
             L  ++GNRS + D    G++ GMTL +  ++   +Y A V+  AYGTR I+E     G
Sbjct: 379 -ALDWWNGNRSTLVDADLTGMLLGMTLLTKPEE---IYRALVEATAYGTRMIIETFKESG 434

Query: 513 HKIDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA-KRYSSLI 570
             I+ L A GG+A KNP  +Q +AD+    I +    ++  LG+AI GA+AA K      
Sbjct: 435 VPIEELFAAGGIAEKNPFVMQIYADVTNMDIKISGSPQAPALGSAIFGALAAGKEKGGYD 494

Query: 571 EAMKAMNAAGQVIHPSKDPKVKK--YHDAKYLIFRELFEQQVSQRSIMAQ 618
           +  KA    G++   +  P  +    ++  Y  ++EL      +  +M +
Sbjct: 495 DIKKAAANMGKLKDITYTPNAENAAVYEKLYAEYKELVHYFGKENHVMKR 544

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q8NXY1|ARAB_STAAW Ribulokinase OS=Staphylococcus aureus (strain MW2) GN=araB PE=3 SV=1

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 256/546 (46%), Gaps = 76/546 (13%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQ---IWKEGDCIE-------QSSTDIW 103
           S  +G+D GT S R  L + + G+++     P     I  E + ++       Q+S D  
Sbjct: 2   SYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELNGLKIPHTYALQNSNDYL 61

Query: 104 HAICAAVDSACSLANVDGEEVKGVGFAATCS-LVAVDADGSPVS--VSWNGDSRRNIIVW 160
             +   +      + +D + + G+G   T S ++  D + +PV     +  +    + +W
Sbjct: 62  EIMEEGISYIVRESKIDPDNIVGIGIDFTSSTIIFTDENLNPVHNLKQFKNNPHAYVKLW 121

Query: 161 MDHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDL 216
             H A K+AEK+       N+  L + G  VS E   PK++ V     E        M+ 
Sbjct: 122 KHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPKIMEVMNRAPEIMEKTAYIMEA 181

Query: 217 SDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 276
            DW+  + T  + RS C                    GF+      W++E      L D 
Sbjct: 182 GDWIVNKLTNKNIRSNCGL------------------GFKAF----WEEETGFHYDLFDK 219

Query: 277 IDGHHAK-IGRSVAFPGHPLGSG---LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES 332
           ID   +K I   V+ P   +G     L    A++LGL   T V   +IDAHA  +G+   
Sbjct: 220 IDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI--- 276

Query: 333 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 392
                    E ++E     M +V GTSTCH+ ++  +  +PG+ G    A++P+ +  E 
Sbjct: 277 -------GSEKDKE-----MTMVMGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEA 324

Query: 393 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452
           GQSA G L +Y+ +   A +S  + AA+R++++FEL+N   E + H+   P  + L    
Sbjct: 325 GQSAVGDLFEYVAKQ--APKSYVDEAANRNMTVFELMN---EKIKHQM--PGESGL---- 373

Query: 453 HVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511
            +  D+H GNRS ++D    G I G+TL +  +    +Y A ++  A+GT+ I++     
Sbjct: 374 -IALDWHNGNRSVLSDSNLTGCIFGLTLQTKHED---IYRAYLEATAFGTKMIMQQYQDW 429

Query: 512 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 570
             +++ + ACGG+  KN + +  +A+++   +I+     +  +GAAILGAV+   ++S+ 
Sbjct: 430 HMEVEKVFACGGIPKKNAVMMDIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSIN 489

Query: 571 EAMKAM 576
           +A+ AM
Sbjct: 490 DAVDAM 495

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6GBT5|ARAB_STAAS Ribulokinase OS=Staphylococcus aureus (strain MSSA476) GN=araB PE=3 SV=1

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 256/546 (46%), Gaps = 76/546 (13%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQ---IWKEGDCIE-------QSSTDIW 103
           S  +G+D GT S R  L + + G+++     P     I  E + ++       Q+S D  
Sbjct: 2   SYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELNGLKIPHTYALQNSNDYL 61

Query: 104 HAICAAVDSACSLANVDGEEVKGVGFAATCS-LVAVDADGSPVS--VSWNGDSRRNIIVW 160
             +   +      + +D + + G+G   T S ++  D + +PV     +  +    + +W
Sbjct: 62  EIMEEGISYIVRESKIDPDNIVGIGIDFTSSTIIFTDENLNPVHNLKQFKNNPHAYVKLW 121

Query: 161 MDHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDL 216
             H A K+AEK+       N+  L + G  VS E   PK++ V     E        M+ 
Sbjct: 122 KHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPKIMEVMNRAPEIMEKTAYIMEA 181

Query: 217 SDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 276
            DW+  + T  + RS C                    GF+      W++E      L D 
Sbjct: 182 GDWIVNKLTNKNIRSNCGL------------------GFKAF----WEEETGFHYDLFDK 219

Query: 277 IDGHHAK-IGRSVAFPGHPLGSG---LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES 332
           ID   +K I   V+ P   +G     L    A++LGL   T V   +IDAHA  +G+   
Sbjct: 220 IDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI--- 276

Query: 333 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 392
                    E ++E     M +V GTSTCH+ ++  +  +PG+ G    A++P+ +  E 
Sbjct: 277 -------GSEKDKE-----MTMVMGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEA 324

Query: 393 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452
           GQSA G L +Y+ +   A +S  + AA+R++++FEL+N   E + H+   P  + L    
Sbjct: 325 GQSAVGDLFEYVAKQ--APKSYVDEAANRNMTVFELMN---EKIKHQM--PGESGL---- 373

Query: 453 HVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511
            +  D+H GNRS ++D    G I G+TL +  +    +Y A ++  A+GT+ I++     
Sbjct: 374 -IALDWHNGNRSVLSDSNLTGCIFGLTLQTKHED---IYRAYLEATAFGTKMIMQQYQDW 429

Query: 512 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 570
             +++ + ACGG+  KN + +  +A+++   +I+     +  +GAAILGAV+   ++S+ 
Sbjct: 430 HMEVEKVFACGGIPKKNAVMMDIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSIN 489

Query: 571 EAMKAM 576
           +A+ AM
Sbjct: 490 DAVDAM 495

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q49V87|ARAB2_STAS1 Ribulokinase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=araB2 PE=3 SV=1

 Score =  166 bits (420), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 272/581 (46%), Gaps = 100/581 (17%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE--------------QSSTDI 102
           +G+D GTGS R  L + E+G+++G     +Q +  G  IE              Q++ D 
Sbjct: 5   IGIDFGTGSGRVFLVNTENGEIIGQY---VQTYAHG-TIEGELNGHKLPQSYALQNANDY 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCS-LVAVDADGSPV--SVSWNGDSRRNIIV 159
              I   +    +  N+D +++ G+G   T S ++ VD    P+  +  +  +    + +
Sbjct: 61  MEVIETGIPEILAKTNIDAKDIVGIGIDFTSSTVIFVDDQMEPMHNNPKFYNNPHAYVKL 120

Query: 160 WMDHRAVKQAE-----KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 214
           W  H A  +A+      I  +N   L Y G  VS E   PK++ V +   E  +     M
Sbjct: 121 WKHHGAQAEADLLFNTAIEEKNR-WLGYYGFNVSSEWMIPKIMEVNDKAPEVMTETADIM 179

Query: 215 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM--EACGWDDEFWEEI- 271
           +  DW+  R TG++ RS C                    GF+     + G+  + ++++ 
Sbjct: 180 EAGDWIVNRLTGENVRSNCGL------------------GFKSFWESSTGFHYDLFDKVD 221

Query: 272 -GLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM 330
             L D++     K+   +   G  +G+ ++   A +LGL P T V   +IDAH+  +G+ 
Sbjct: 222 DNLSDIV---RTKVEAPIVSIGESVGT-VSAEMAHKLGLSPETVVSPFIIDAHSSLLGI- 276

Query: 331 ESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLT 390
                      E ++E     M +V GTSTCH+ +++ +  +PG+ G    A++P  +  
Sbjct: 277 ---------GAEKDKE-----MTMVMGTSTCHLMLNKEQHKVPGISGSVKGAIIPDLYAY 322

Query: 391 EGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTE 450
           E GQ+A G L +Y+     +       A  R +S+FELLN    S  +   S  +A    
Sbjct: 323 EAGQTAVGDLFEYVANQ--SPYEYVKTAEDRGISIFELLNEK-ASQRYPGESGLIAL--- 376

Query: 451 DIHVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509
                 D+H GNRS ++D   KG + G++L +  + +   Y A ++  A+GT+ I++   
Sbjct: 377 ------DWHNGNRSVLSDSNLKGSLFGLSLQTKHEDI---YRAYMEATAFGTKMIMQQYQ 427

Query: 510 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV---AAKR 565
               +++ + ACGG+  KN L ++ +A+++   I +     +  +GAAILGA+   A   
Sbjct: 428 GWQMEVERVFACGGIPKKNHLLMEIYANVLNKKITVIDSEYAPAIGAAILGAICGGAHPN 487

Query: 566 YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELF 606
           +SS I+AMK       V++     +V+  H A+ LI+++LF
Sbjct: 488 FSSAIQAMKE-----PVLY-----QVEPDH-AQVLIYKKLF 517

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
225446130	581	PREDICTED: FGGY carbohydrate kinase doma	0.927	0.991	0.852	0.0
42567264	579	FGGY family of carbohydrate kinase [Arab	0.932	1.0	0.825	0.0
449462687	613	PREDICTED: FGGY carbohydrate kinase doma	0.982	0.995	0.774	0.0
297802998	580	hypothetical protein ARALYDRAFT_491720 [	0.932	0.998	0.824	0.0
51971499	579	unnamed protein product [Arabidopsis tha	0.932	1.0	0.822	0.0
7269931	569	putative protein [Arabidopsis thaliana]	0.916	1.0	0.815	0.0
449507931	613	PREDICTED: FGGY carbohydrate kinase doma	0.982	0.995	0.768	0.0
242074508	574	hypothetical protein SORBIDRAFT_06g03021	0.921	0.996	0.819	0.0
326534226	571	predicted protein [Hordeum vulgare subsp	0.909	0.989	0.819	0.0
357479747	576	FGGY carbohydrate kinase domain-containi	0.927	1.0	0.816	0.0

>gi|225446130|ref|XP_002275685.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein [Vitis vinifera] gi|297735351|emb|CBI17791.3| unnamed protein product [Vitis vinifera]

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/576 (85%), Positives = 540/576 (93%)

Query: 46  ATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA 105
           A  P A  RSV LGVDVGTGSARAGLFDE GKLLGSASSPIQIWK+G+CIEQSSTDIWHA
Sbjct: 6   APEPAAPLRSVLLGVDVGTGSARAGLFDEDGKLLGSASSPIQIWKDGNCIEQSSTDIWHA 65

Query: 106 ICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRA 165
           ICAAV +ACSLANV GEEV G+GFAATCSLVAVDADGSPV+VS +GD+RRNIIVWMDHRA
Sbjct: 66  ICAAVKAACSLANVAGEEVAGLGFAATCSLVAVDADGSPVTVSLSGDTRRNIIVWMDHRA 125

Query: 166 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 225
           VKQAEKINS +SPVLQYCGG++SPEMQPPKLLWVKENLQESW+M FRWMDLSDWL+YRAT
Sbjct: 126 VKQAEKINSSSSPVLQYCGGSLSPEMQPPKLLWVKENLQESWTMAFRWMDLSDWLAYRAT 185

Query: 226 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 285
           GDDTRSLCTTVCKWTYLGHAHM+Q+NEK  R+MEACGWDD+FWEEIGLGDLIDGHHAKIG
Sbjct: 186 GDDTRSLCTTVCKWTYLGHAHMEQINEKDSRNMEACGWDDDFWEEIGLGDLIDGHHAKIG 245

Query: 286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEE 345
           RSVAFPGHPLGSGLTP AAKE+GL  GTPVGTSLIDAHAGGVGVMESV    SE+KE E+
Sbjct: 246 RSVAFPGHPLGSGLTPDAAKEMGLRAGTPVGTSLIDAHAGGVGVMESVAVPDSESKEYEK 305

Query: 346 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 405
            AICHR+VLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLDYII
Sbjct: 306 GAICHRLVLVCGTSTCHMAVSRRKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDYII 365

Query: 406 ENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 465
           ENHVAS  LANRAAS+++S+FELLN  LESM+ +  SPF+AALTEDIHVLPDFHGNRSPI
Sbjct: 366 ENHVASPRLANRAASQNISVFELLNKILESMMQDLKSPFLAALTEDIHVLPDFHGNRSPI 425

Query: 466 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA 525
           ADPK+KG++CG+TLD+SEKQLALLYLATVQ IAYGTRHIV+HCNAHGH+IDTLLACGGLA
Sbjct: 426 ADPKAKGVVCGLTLDTSEKQLALLYLATVQSIAYGTRHIVDHCNAHGHQIDTLLACGGLA 485

Query: 526 KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 585
           KNPLFLQ+HADI+GCPI+LPRE+ESVLLGAAILGAVA+K+YSSL ++MKA+NAAGQVIHP
Sbjct: 486 KNPLFLQEHADIVGCPIVLPRESESVLLGAAILGAVASKKYSSLSDSMKALNAAGQVIHP 545

Query: 586 SKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           ++DPKVKKYHDAKY IFREL+EQQ+S RSIMAQALA
Sbjct: 546 AEDPKVKKYHDAKYQIFRELYEQQLSHRSIMAQALA 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567264|ref|NP_194760.2| FGGY family of carbohydrate kinase [Arabidopsis thaliana] gi|332660351|gb|AEE85751.1| FGGY family of carbohydrate kinase [Arabidopsis thaliana]

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/579 (82%), Positives = 530/579 (91%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
           WHA+CAAV SACSLANV   EVKG+GFAATCSLVAVDA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  ES S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query: 403 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query: 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 582
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 583 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462687|ref|XP_004149072.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like [Cucumis sativus]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/617 (77%), Positives = 550/617 (89%), Gaps = 7/617 (1%)

Query: 5   KRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGT 64
           KR +W++T PLL Q+HR    P     R+  +  G+     +  PP   R VFLGVDVGT
Sbjct: 4   KRNSWSETAPLLGQQHRFQSLPA----RLPSSNIGMASPTDSVPPP---RPVFLGVDVGT 56

Query: 65  GSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV 124
           GSARAG+FDE+GKLLGS+SSPIQIWK+G+CIEQSSTDIWHA+CAAV SACS ANV GEEV
Sbjct: 57  GSARAGIFDETGKLLGSSSSPIQIWKDGNCIEQSSTDIWHAVCAAVKSACSKANVSGEEV 116

Query: 125 KGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCG 184
           KG+GF ATCSLVAVDADGSPV+VSW+GDSRRN+IVWMDHRAV+QAE+INS NSPVLQYCG
Sbjct: 117 KGLGFTATCSLVAVDADGSPVTVSWSGDSRRNVIVWMDHRAVEQAERINSFNSPVLQYCG 176

Query: 185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 244
           G++SPEMQPPKLLWVKENL ++WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH
Sbjct: 177 GSLSPEMQPPKLLWVKENLPDTWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 236

Query: 245 AHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAA 304
           AHM Q NEK  R+MEACGWDD+FWEEIGL DLIDGHHAKIGRSVAFPGHPLGSGLTP AA
Sbjct: 237 AHMSQYNEKDSRNMEACGWDDDFWEEIGLRDLIDGHHAKIGRSVAFPGHPLGSGLTPVAA 296

Query: 305 KELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMA 364
           KELGLV G PVG SLIDAHAGGVGV+ESVP   S+++   +E I +RM LVCGTSTCHMA
Sbjct: 297 KELGLVAGIPVGVSLIDAHAGGVGVLESVPVQDSDSEGFNKEMILNRMALVCGTSTCHMA 356

Query: 365 VSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 424
           VSR+KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD+II+NHVAS  LANRAAS+ +S
Sbjct: 357 VSRDKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIQNHVASPHLANRAASQKIS 416

Query: 425 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEK 484
           +F++LN  LE+++ +  SPF+AALTEDIH+LPDFHGNRSPI+DPK+KG+I G+TLD+SE+
Sbjct: 417 VFDILNKLLENLVVDLKSPFLAALTEDIHILPDFHGNRSPISDPKAKGVIYGLTLDTSEQ 476

Query: 485 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 544
           QL++LYLATVQ IAYGTRHIVEHCN+HGHKI+TLLACGGLAKN LF+Q+HADIIGCPIIL
Sbjct: 477 QLSILYLATVQAIAYGTRHIVEHCNSHGHKINTLLACGGLAKNSLFIQEHADIIGCPIIL 536

Query: 545 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 604
           PRE+ESVLLGAAILGAVAA++YS+L +AMKA+N+AGQVI+PS DPKVK YHDAKY IFRE
Sbjct: 537 PRESESVLLGAAILGAVAARKYSTLQDAMKALNSAGQVIYPSTDPKVKLYHDAKYQIFRE 596

Query: 605 LFEQQVSQRSIMAQALA 621
           L+EQQ+S RSIMA+AL+
Sbjct: 597 LYEQQLSHRSIMARALS 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802998|ref|XP_002869383.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata] gi|297315219|gb|EFH45642.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata]

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/580 (82%), Positives = 529/580 (91%), Gaps = 1/580 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRS FLGVDVGTGSARAGLFDE+GKLLGSASSPIQIWK+GDC+EQSSTDI
Sbjct: 1   MTTAELNPFPSRSFFLGVDVGTGSARAGLFDENGKLLGSASSPIQIWKDGDCVEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
           WHA+CAAV SACSLANV   EVKG+GFAATCSLVAVDA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSEVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
           RATGDDTRSLCTTVCKWTYLGHAHM QM+EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMSEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  +S S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKSDSDSLTKE 300

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWS MVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSGMVPEYWLTEGGQSATGALLD 360

Query: 403 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNLLKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
           SP+ADP SKG+I GM+LDSSEKQLALLYLAT+QGIAYGTRHIVEHCNAHGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDSSEKQLALLYLATIQGIAYGTRHIVEHCNAHGHKIDTLLACG 480

Query: 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQ- 581
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQ 
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 582 VIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           V+HPS DPKV KYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VVHPSSDPKVTKYHDAKYRIFRNLYEQQLSHRSIIAEALA 580

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971499|dbj|BAD44414.1| unnamed protein product [Arabidopsis thaliana]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/579 (82%), Positives = 528/579 (91%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGL D++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLSDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
           WHA+CAAV SACSLANV   EVKG+GFAATCSLVAVDA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
           H AVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HGAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  ES S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query: 403 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query: 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 582
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 583 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7269931|emb|CAB81024.1| putative protein [Arabidopsis thaliana]

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/579 (81%), Positives = 525/579 (90%), Gaps = 10/579 (1%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
           WHA+CAAV SACSLANV   EVKG+GFAATCSLVAVDA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVME          +
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVME----------K 290

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 291 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 350

Query: 403 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 351 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 410

Query: 463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 411 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 470

Query: 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 582
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 471 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 530

Query: 583 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 531 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507931|ref|XP_004163170.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like [Cucumis sativus]

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/617 (76%), Positives = 547/617 (88%), Gaps = 7/617 (1%)

Query: 5   KRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGT 64
           KR +W++T PLL Q+HR    P     R+  +  G+     +  PP   R VFLGVDVGT
Sbjct: 4   KRNSWSETAPLLGQQHRFQSLPA----RLPSSNIGMASPTDSVPPP---RPVFLGVDVGT 56

Query: 65  GSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV 124
           GSARAG+FDE+GKLLGS+SSPIQIWK+G+CIEQSSTDIWHA+CAAV SACS ANV GEEV
Sbjct: 57  GSARAGIFDETGKLLGSSSSPIQIWKDGNCIEQSSTDIWHAVCAAVKSACSKANVSGEEV 116

Query: 125 KGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCG 184
           KG+GF ATCSLVAVDADGSPV+VSW+GDSRRN+IVWMDHRAV+QAE+INS NSPVLQYCG
Sbjct: 117 KGLGFTATCSLVAVDADGSPVTVSWSGDSRRNVIVWMDHRAVEQAERINSFNSPVLQYCG 176

Query: 185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 244
           G++SPEMQPPKLLWVKENL ++WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH
Sbjct: 177 GSLSPEMQPPKLLWVKENLPDTWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 236

Query: 245 AHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAA 304
           AHM Q NEK  R+MEACGWDD+FWEEIGL DLIDGHHAKIGRSVAFPGHPLGSGLTP AA
Sbjct: 237 AHMSQYNEKDSRNMEACGWDDDFWEEIGLRDLIDGHHAKIGRSVAFPGHPLGSGLTPVAA 296

Query: 305 KELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMA 364
           K   +V G PVG SLIDAHAGGVGV+ESVP   S+++   +E I +RM LVCGTSTCHMA
Sbjct: 297 KVRNIVAGIPVGVSLIDAHAGGVGVLESVPVQDSDSEGFNKEMILNRMALVCGTSTCHMA 356

Query: 365 VSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 424
           VSR+KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD+II+NHVAS  LANRAAS+ +S
Sbjct: 357 VSRDKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIQNHVASPHLANRAASQKIS 416

Query: 425 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEK 484
           +F++LN  LE+++ +  SPF+AALTEDIH+LPDFHGNRSPI+DPK+KG+I G+TLD+SE+
Sbjct: 417 VFDILNKLLENLVVDLKSPFLAALTEDIHILPDFHGNRSPISDPKAKGVIYGLTLDTSEQ 476

Query: 485 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 544
           QL++LYLATVQ IAYGTRHIVEHCN+HGHKI+TLLACGGLAKN LF+Q+HADIIGCPIIL
Sbjct: 477 QLSILYLATVQAIAYGTRHIVEHCNSHGHKINTLLACGGLAKNSLFIQEHADIIGCPIIL 536

Query: 545 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 604
           PRE+ESVLLGAAILGAVAA++YS+L +AMKA+N+AGQVI+PS DPKVK YHDAKY IFRE
Sbjct: 537 PRESESVLLGAAILGAVAARKYSTLQDAMKALNSAGQVIYPSTDPKVKLYHDAKYQIFRE 596

Query: 605 LFEQQVSQRSIMAQALA 621
           L+EQQ+S RSIMA+AL+
Sbjct: 597 LYEQQLSHRSIMARALS 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242074508|ref|XP_002447190.1| hypothetical protein SORBIDRAFT_06g030210 [Sorghum bicolor] gi|241938373|gb|EES11518.1| hypothetical protein SORBIDRAFT_06g030210 [Sorghum bicolor]

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/572 (81%), Positives = 522/572 (91%)

Query: 49  PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICA 108
           P   + SVFLGVDVGTGSARAGLFDE GKLLGSASSPIQIWKE DCIEQSSTDIWHA+CA
Sbjct: 2   PRGSAASVFLGVDVGTGSARAGLFDEKGKLLGSASSPIQIWKEKDCIEQSSTDIWHAVCA 61

Query: 109 AVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
           AV SACSLANV  E+V G+GFAATCSLVAVDADGSPVSVS +GD+RRNIIVWMDHRAV Q
Sbjct: 62  AVKSACSLANVAPEDVAGLGFAATCSLVAVDADGSPVSVSLSGDTRRNIIVWMDHRAVNQ 121

Query: 169 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD 228
           AE+IN+ NSPVLQYCGG VSPEMQ PKLLW+KENLQESWSMV RWMDLSDWL+YRATGDD
Sbjct: 122 AERINATNSPVLQYCGGGVSPEMQAPKLLWMKENLQESWSMVCRWMDLSDWLAYRATGDD 181

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
           TRSLCTTVCKWTYLGHAHM+Q  E   RDMEACGWD+ FWEEIGLGDL++G+ AKIGRSV
Sbjct: 182 TRSLCTTVCKWTYLGHAHMEQWKESDSRDMEACGWDNVFWEEIGLGDLVEGNCAKIGRSV 241

Query: 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 348
           AFPGHPLGSGLTP AAKELGL+PGTPVGTSLIDAHAGGVGVMESV ++ S+A  ++E+AI
Sbjct: 242 AFPGHPLGSGLTPTAAKELGLLPGTPVGTSLIDAHAGGVGVMESVSDAGSKAGLSDEDAI 301

Query: 349 CHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 408
           CHRMVLVCGTSTCHMAVS+N+LFIPGVWGPFWSAMVP+FWLTEGGQSATGALLDYIIENH
Sbjct: 302 CHRMVLVCGTSTCHMAVSKNRLFIPGVWGPFWSAMVPEFWLTEGGQSATGALLDYIIENH 361

Query: 409 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 468
           VAS  L+N AAS+ +S+FELLN  L SM HE+NSPF++ALT+D HVLPDFHGNRSP+ADP
Sbjct: 362 VASPLLSNHAASQSISIFELLNKMLLSMSHEQNSPFLSALTQDTHVLPDFHGNRSPVADP 421

Query: 469 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP 528
           KSKG+I G+TLD+SEK LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 
Sbjct: 422 KSKGVIYGLTLDTSEKHLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNS 481

Query: 529 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 588
           +++Q+HADI GCPIILPRENESVLLGAA+LGAVA K++  + +AMKA+NAAG+V++PS D
Sbjct: 482 VYIQEHADITGCPIILPRENESVLLGAAVLGAVAGKKFLGVRDAMKALNAAGKVVNPSSD 541

Query: 589 PKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL 620
           P+VKKYHDAKY IFR L+EQQ+S RS MAQAL
Sbjct: 542 PRVKKYHDAKYQIFRSLYEQQLSHRSTMAQAL 573

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326534226|dbj|BAJ89463.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/565 (81%), Positives = 517/565 (91%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           VFLGVDVGTGSARAG+FDE GKLLGSASSPIQIWKE DCIEQSSTDIW A+C AV SACS
Sbjct: 6   VFLGVDVGTGSARAGVFDEKGKLLGSASSPIQIWKEKDCIEQSSTDIWLAVCTAVKSACS 65

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           LANV  E+V G+GFAATCSLVAVDADGSPVSVSW+ D+RRNIIVWMDHRAV QA++IN+R
Sbjct: 66  LANVAAEDVAGLGFAATCSLVAVDADGSPVSVSWSADARRNIIVWMDHRAVDQADRINAR 125

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 235
           NSPVLQYCGG VSPEMQ PKLLWVKENLQESWSMV RWMDLSDWL+YRATGDDTRSLCTT
Sbjct: 126 NSPVLQYCGGGVSPEMQAPKLLWVKENLQESWSMVCRWMDLSDWLAYRATGDDTRSLCTT 185

Query: 236 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 295
           VCKWTYLGHAHM Q  E    DM+ACGWDD FWEEIGLGDL++G+ AKIGRSVAFPGHPL
Sbjct: 186 VCKWTYLGHAHMDQWKESDSCDMQACGWDDVFWEEIGLGDLVEGNRAKIGRSVAFPGHPL 245

Query: 296 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 355
           GSGLTP +AKELGL+PGTPVGTSLIDAHAGGVGVMESVPE+ S+   ++EEAIC RMVLV
Sbjct: 246 GSGLTPTSAKELGLLPGTPVGTSLIDAHAGGVGVMESVPEAESKDDLSDEEAICRRMVLV 305

Query: 356 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 415
           CGTSTCHMAVS+NKLFIPGVWGPFWSAM+P++WLTEGGQSATGALLDYI+ENH A+  LA
Sbjct: 306 CGTSTCHMAVSKNKLFIPGVWGPFWSAMIPEYWLTEGGQSATGALLDYIVENHAAAPLLA 365

Query: 416 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 475
           N AAS+ VS+FELLN  L SM HE+N PF++AL++D+HVLPDFHGNRSP+ADPKSKG+IC
Sbjct: 366 NHAASQSVSIFELLNKILLSMSHEQNIPFLSALSQDMHVLPDFHGNRSPVADPKSKGVIC 425

Query: 476 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 535
           G+TLD+SEK LALLYLAT+Q IAYGTRHIVEHCNAHGHKIDTLLACGGLAKN L++Q+HA
Sbjct: 426 GLTLDTSEKHLALLYLATIQSIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNSLYIQEHA 485

Query: 536 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 595
           DIIGCPIILPRENESVLLGA++LGAVAAK++S + +AMK+MNAAG+V+HPS DP+VKKYH
Sbjct: 486 DIIGCPIILPRENESVLLGASVLGAVAAKKFSGIHDAMKSMNAAGKVVHPSSDPRVKKYH 545

Query: 596 DAKYLIFRELFEQQVSQRSIMAQAL 620
           DAKY IFR L+EQQ+S RSIM QAL
Sbjct: 546 DAKYQIFRSLYEQQLSHRSIMMQAL 570

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479747|ref|XP_003610159.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula] gi|355511214|gb|AES92356.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula]

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/579 (81%), Positives = 528/579 (91%), Gaps = 3/579 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           MA  T P A SRSVFLGVDVGTGSARAGLFDE GKLLGS+SSPIQIWK+G  +EQSSTDI
Sbjct: 1   MASPTEPSA-SRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSPIQIWKDGAFVEQSSTDI 59

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
           W A+C AV +ACS A V   EVK +GFAATCSLVAVD+D SPVSVS +GDSRRN+IVWMD
Sbjct: 60  WLAVCVAVKAACSKAKVAAAEVKSLGFAATCSLVAVDSDSSPVSVSRSGDSRRNVIVWMD 119

Query: 163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
           HRAV QAE+IN+  SP L+YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY
Sbjct: 120 HRAVDQAERINTSKSPALEYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 179

Query: 223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
           RATGDDTRSLCTTVCKWTYLGHAHMQ +N+   RDMEACGWDDEFWEEIGLGDL++GHHA
Sbjct: 180 RATGDDTRSLCTTVCKWTYLGHAHMQYVNDTDSRDMEACGWDDEFWEEIGLGDLVEGHHA 239

Query: 283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342
           KIGRSVAFPGHPLGSGLTP AAKELGL+PG PVGTSLIDAHAGGVGV+ESVP   SE +E
Sbjct: 240 KIGRSVAFPGHPLGSGLTPTAAKELGLLPGIPVGTSLIDAHAGGVGVIESVPP--SETEE 297

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
           N++EAIC+RMVLVCGTSTCHMAVSR+KLFIPG+WGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 298 NDKEAICNRMVLVCGTSTCHMAVSRSKLFIPGIWGPFWSAMVPEYWLTEGGQSATGALLD 357

Query: 403 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
           +IIENH +S  LANRAAS+ +S+FELLN  LE+++ E+N  F+ ALTE +HVLPDFHGNR
Sbjct: 358 HIIENHASSIHLANRAASQKISVFELLNKLLETIMTEQNQSFIGALTEYLHVLPDFHGNR 417

Query: 463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
           SPIADPKSKG+I G+TLD+S++QLALLYLATVQGIAYGTRHIVEHCNAHGHKI+TLLACG
Sbjct: 418 SPIADPKSKGVIYGLTLDTSDQQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACG 477

Query: 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 582
           GL+KNP+++Q+HADIIGCPIILPRE+ESVLLGAAILGAVA K+Y+SL EAMKA+NAAGQV
Sbjct: 478 GLSKNPIYIQEHADIIGCPIILPRESESVLLGAAILGAVATKKYNSLREAMKALNAAGQV 537

Query: 583 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
           IHPS DPKVKKYHDAKY IFR L+EQQ+S RS+MAQALA
Sbjct: 538 IHPSNDPKVKKYHDAKYKIFRGLYEQQLSNRSVMAQALA 576

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	621
TAIR|locus:2118761	579	AT4G30310 [Arabidopsis thalian	0.932	1.0	0.780	1.2e-255
CGD|CAL0004219	742	orf19.2737 [Candida albicans (	0.782	0.654	0.392	8.8e-96
UNIPROTKB|Q5AF71	742	CaO19.10251 "Potential carbohy	0.782	0.654	0.392	8.8e-96
ASPGD|ASPL0000044320	603	AN1568 [Emericella nidulans (t	0.885	0.912	0.362	8.1e-92
SGD|S000002516	715	YDR109C "Putative kinase" [Sac	0.787	0.683	0.376	9e-90
UNIPROTKB|G4N676	592	MGG_08591 "Uncharacterized pro	0.900	0.944	0.345	1.1e-89
UNIPROTKB|E1BNF8	550	FGGY "Uncharacterized protein"	0.560	0.632	0.461	2.4e-83
MGI|MGI:1922828	552	Fggy "FGGY carbohydrate kinase	0.560	0.630	0.464	6.4e-83
UNIPROTKB|Q96C11	551	FGGY "FGGY carbohydrate kinase	0.560	0.631	0.459	7.4e-82
UNIPROTKB|F1LSP9	552	Fggy "Protein Fggy" [Rattus no	0.560	0.630	0.459	1.5e-81

TAIR|locus:2118761 AT4G30310 [Arabidopsis thaliana (taxid:3702)]

 Score = 2461 (871.4 bits), Expect = 1.2e-255, P = 1.2e-255
 Identities = 452/579 (78%), Positives = 500/579 (86%)

Query:    43 MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
             M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct:     1 MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query:   103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMD 162
             WHA+CAAV SACSLANV   EVKG+GFAATCSLVAVDA+GSPV+VSW+GDSRRNIIVWMD
Sbjct:    61 WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query:   163 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 222
             HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct:   121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query:   223 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 282
             RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct:   181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query:   283 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXX 342
             KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES          
Sbjct:   241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query:   343 XXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 402
                  +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct:   301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query:   403 YIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 462
             +IIENHV             VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct:   361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query:   463 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 522
             SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct:   421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query:   523 GLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAGQV 582
             GL+KNPLF+Q+HADI+GCPIILPRE+ES             K Y SL +AMKA+NAAGQV
Sbjct:   481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query:   583 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 621
             +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct:   541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0019200 "carbohydrate kinase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

CGD|CAL0004219 orf19.2737 [Candida albicans (taxid:5476)]

 Score = 910 (325.4 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 201/512 (39%), Positives = 291/512 (56%)

Query:    49 PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAIC 107
             PPA     ++GVDVGTGSARA L D +G +LG A  PI+  + E + I Q+ST+IW AIC
Sbjct:    23 PPAEPDVYYIGVDVGTGSARACLIDTNGIILGLAERPIKRQELEANYITQNSTEIWEAIC 82

Query:   108 AAVDSACSLANVDGEEVKGVGFAATCSLVAV-DADGSPVSVSWN-GDSRRNIIVWMDHRA 165
               V S    + V  E+V G+GF ATCSLVA+ ++   PVSV  N  + + NII+WMDHRA
Sbjct:    83 YCVRSCLRDSGVQPEDVFGIGFDATCSLVAISESTDQPVSVGPNFKNDKDNIILWMDHRA 142

Query:   166 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 225
             V +   IN+ N   L+Y GG +S EM+ PK+ W+K + +       ++ DL D+L ++AT
Sbjct:   143 VDETNAINATNDKCLKYVGGQMSIEMELPKMKWLKHH-KPGGIKDCKFYDLPDYLVHKAT 201

Query:   226 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 285
             G +TRS C+ VCK  ++           G  D E  GW +EF   I + +L++ +  ++G
Sbjct:   202 GTETRSYCSVVCKQGFV---------PIGVEDSET-GWSEEFLSSIDMPELVEDNFRRLG 251

Query:   286 ----RSVAF--PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES---VPXX 336
                 ++  +   G P+G+ LTP AA++LGL     VG+ +IDA+AG VG + +   VP  
Sbjct:   252 GIPGKNGKYLTAGDPVGN-LTPEAAEDLGLTTECVVGSPVIDAYAGWVGTVAAKADVPAL 310

Query:   337 XXXXXXXXXX--XICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 394
                           C R+  V GTSTCH+A+++   F+ GVWGP+ + M   +WL EGGQ
Sbjct:   311 QDEDAHSDGSIGTACGRLAAVAGTSTCHLAMTKEPCFVQGVWGPYKNVMAEGYWLAEGGQ 370

Query:   395 SATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 454
             S TG LL +++  H             ++S FE LN  LE ++ + N     +L   +  
Sbjct:   371 SITGQLLAHVLATHPANHALIRNAEQSNISKFEYLNSLLEDLVKDNNERSPVSLARHMFF 430

Query:   455 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 514
               DFHGNRSPIADP+ +G I G ++D+S   LA+ Y    + IA  TR I+E     GHK
Sbjct:   431 YGDFHGNRSPIADPRMRGSIIGQSMDNSLHDLAIQYFGACEFIAQQTRQIIEEMEKSGHK 490

Query:   515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546
             I  +   GG ++N L ++  AD  G P+I+PR
Sbjct:   491 ISCIFMSGGQSRNGLLMRLLADCTGLPVIIPR 522

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AF71 CaO19.10251 "Potential carbohydrate kinase" [Candida albicans SC5314 (taxid:237561)]

 Score = 910 (325.4 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 201/512 (39%), Positives = 291/512 (56%)

Query:    49 PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAIC 107
             PPA     ++GVDVGTGSARA L D +G +LG A  PI+  + E + I Q+ST+IW AIC
Sbjct:    23 PPAEPDVYYIGVDVGTGSARACLIDTNGIILGLAERPIKRQELEANYITQNSTEIWEAIC 82

Query:   108 AAVDSACSLANVDGEEVKGVGFAATCSLVAV-DADGSPVSVSWN-GDSRRNIIVWMDHRA 165
               V S    + V  E+V G+GF ATCSLVA+ ++   PVSV  N  + + NII+WMDHRA
Sbjct:    83 YCVRSCLRDSGVQPEDVFGIGFDATCSLVAISESTDQPVSVGPNFKNDKDNIILWMDHRA 142

Query:   166 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 225
             V +   IN+ N   L+Y GG +S EM+ PK+ W+K + +       ++ DL D+L ++AT
Sbjct:   143 VDETNAINATNDKCLKYVGGQMSIEMELPKMKWLKHH-KPGGIKDCKFYDLPDYLVHKAT 201

Query:   226 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 285
             G +TRS C+ VCK  ++           G  D E  GW +EF   I + +L++ +  ++G
Sbjct:   202 GTETRSYCSVVCKQGFV---------PIGVEDSET-GWSEEFLSSIDMPELVEDNFRRLG 251

Query:   286 ----RSVAF--PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES---VPXX 336
                 ++  +   G P+G+ LTP AA++LGL     VG+ +IDA+AG VG + +   VP  
Sbjct:   252 GIPGKNGKYLTAGDPVGN-LTPEAAEDLGLTTECVVGSPVIDAYAGWVGTVAAKADVPAL 310

Query:   337 XXXXXXXXXX--XICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 394
                           C R+  V GTSTCH+A+++   F+ GVWGP+ + M   +WL EGGQ
Sbjct:   311 QDEDAHSDGSIGTACGRLAAVAGTSTCHLAMTKEPCFVQGVWGPYKNVMAEGYWLAEGGQ 370

Query:   395 SATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 454
             S TG LL +++  H             ++S FE LN  LE ++ + N     +L   +  
Sbjct:   371 SITGQLLAHVLATHPANHALIRNAEQSNISKFEYLNSLLEDLVKDNNERSPVSLARHMFF 430

Query:   455 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 514
               DFHGNRSPIADP+ +G I G ++D+S   LA+ Y    + IA  TR I+E     GHK
Sbjct:   431 YGDFHGNRSPIADPRMRGSIIGQSMDNSLHDLAIQYFGACEFIAQQTRQIIEEMEKSGHK 490

Query:   515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546
             I  +   GG ++N L ++  AD  G P+I+PR
Sbjct:   491 ISCIFMSGGQSRNGLLMRLLADCTGLPVIIPR 522

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000044320 AN1568 [Emericella nidulans (taxid:162425)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 209/577 (36%), Positives = 303/577 (52%)

Query:    57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
             ++G+DVGTGSARA + D +G ++G AS  I +W+ E    EQS+ +IW  ICA+V  A +
Sbjct:    28 YIGIDVGTGSARACIIDHNGDIVGLASKDIGLWQPEQQHYEQSTLNIWQCICASVQQALA 87

Query:   116 LANVDGEEVKGVGFAATCSLVAVD-ADGSPVSVSWNG--DSRRNIIVWMDHRAVKQAEKI 172
                +   +V G+GF ATCSL         PVSV+  G   + RN+I+W+DHRAVK+ E I
Sbjct:    88 ERAIPSSQVHGIGFDATCSLAVFSKTTNKPVSVTRQGGFSTERNVILWLDHRAVKETELI 147

Query:   173 NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSL 232
             N+    VL+Y GG +SPEM+ PK+LW+K  +        ++ DL D L++ ATG++TRS 
Sbjct:   148 NATGHKVLKYVGGTMSPEMEMPKILWLKNQMPPEVFADCKFYDLVDALTHIATGEETRSY 207

Query:   233 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 292
             C+ VCK  YL      Q+  +G       GW  +F E IGLG+L     A+IG      G
Sbjct:   208 CSLVCKQGYLP----SQV--EG----STTGWQGDFLESIGLGELAADGFARIGGVNGETG 257

Query:   293 HPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXX 347
               L +G     L+  AAKELGL PG  VG  +IDA+AG +G + +               
Sbjct:   258 QHLSAGERAGRLSARAAKELGLPPGIAVGAGVIDAYAGWIGTVGTKIDGVDVVGNHNRAD 317

Query:   348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 407
               +R+  V GTSTCH+A+S N +F+PGVWGP+   +    W+ EGGQSATG LL ++++ 
Sbjct:   318 AFNRLAAVAGTSTCHIAMSSNPVFVPGVWGPYRDTVFRGCWMAEGGQSATGQLLKHVLDT 377

Query:   408 HVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
             H              + +F  L+G L ++  ++N P +AAL        DF GNRSP+AD
Sbjct:   378 HPASKSAFAVAADRGLDIFSFLDGHLAALAAKQNLPCIAALARHFFFYGDFFGNRSPLAD 437

Query:   468 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 527
             P   G + G+T D+S   LA+ Y  T++ IA  TR IVE  N  GH I ++   G   KN
Sbjct:   438 PNMTGSVVGLTADTSIDSLAIHYYGTLEFIALQTRQIVETMNKAGHAITSIFMSGSQCKN 497

Query:   528 PLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYS--------SLIEAMKAMNAA 579
                ++  A     P+I+PR                 K  +         L + ++  +  
Sbjct:   498 RTLVKLIATACNMPVIVPRGRHVEAAVCHGAAMLGVKAANLDAPGKTVDLWDVIEQTSKP 557

Query:   580 GQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 616
             G V HP+     +    AKY +F +   +Q   R ++
Sbjct:   558 GDVCHPTTAEYERALLAAKYQVFLDQCTRQREYREMV 594

GO:0019150 "D-ribulokinase activity" evidence=RCA

GO:0046835 "carbohydrate phosphorylation" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

SGD|S000002516 YDR109C "Putative kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 867 (310.3 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 193/513 (37%), Positives = 288/513 (56%)

Query:    48 APPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAI 106
             +P       ++GVDVGTGSARA + D+SG +L  A  PI+  +   + I QSS +IW+A+
Sbjct:    31 SPQDPEAKFYVGVDVGTGSARACVIDQSGNMLSLAEKPIKREQLISNFITQSSREIWNAV 90

Query:   107 CAAVDSACSLANVDGEEVKGVGFAATCSLVAVDADG-SPVSVSWN-GDSRRNIIVWMDHR 164
             C  V +    + VD E V+G+GF ATCSLV V A     ++V  +  ++ +NII+WMDHR
Sbjct:    91 CYCVRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEEIAVGPDFTNNDQNIILWMDHR 150

Query:   165 AVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 224
             A+K+ E+INS     L+Y GG +S EM+ PK+ W+K NL+       ++ DL D+L+++A
Sbjct:   151 AMKETEEINSSGDKCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYLTFKA 210

Query:   225 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 284
             TG + RS C+ VCK  +L       +  +G  D+   GW  EF   IGL +L      ++
Sbjct:   211 TGKENRSFCSAVCKQGFL------PVGVEG-SDI---GWSKEFLNSIGLSELTKNDFERL 260

Query:   285 GRSVAFPGHPLGSG--LTPA---AAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXX 339
             G S+    + L +G  ++P    AA +LGL     V + +IDA+AG VG + + P     
Sbjct:   261 GGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVK 320

Query:   340 XXXXXXXX------ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 393
                              R+  V GTSTCH+ +S+N +F+ GVWGP+   +   FW  EGG
Sbjct:   321 GLAETENYKKDFNGAIGRLAAVAGTSTCHILLSKNPIFVHGVWGPYRDVLARGFWAAEGG 380

Query:   394 QSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453
             QS TG LLD++I  H              VS FE LN  LE+++ +R    V +L + + 
Sbjct:   381 QSCTGVLLDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLF 440

Query:   454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH 513
                D+HGNRSPIADP  +  I G ++D+S + LA++YL+  + I+  TR I+E     GH
Sbjct:   441 FYGDYHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGH 500

Query:   514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546
             +I+ +   GG  +N L ++  AD  G PI++PR
Sbjct:   501 EINAIFMSGGQCRNSLLMRLLADCTGLPIVIPR 533

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4N676 MGG_08591 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 206/596 (34%), Positives = 311/596 (52%)

Query:    52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----EGDCIEQSSTDIWHAI 106
             +S   ++G+DVGTGSARA L D +G +   A+  I++W+     EG   EQS+TDIW AI
Sbjct:     5 KSTEHYIGIDVGTGSARACLIDVTGDIKSLATKEIKLWQPAAGYEGSHYEQSTTDIWDAI 64

Query:   107 CAAVDSACSLANVDGEEVKGVGFAATCSLVAVDAD-GSPVSVSW----NGDSR-RNIIVW 160
             C  V    +   +D   + G+GF ATCSL     D   P+ V+     N     RN+I+W
Sbjct:    65 CFCVKKVVTDTGIDTSTIHGLGFDATCSLAVFSHDTDEPIPVTGPDFSNASGEDRNVILW 124

Query:   161 MDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 220
             +DHR + +AEKIN+    +L+Y GG +S EM+ PK+LW+K N+ +      ++ DL+D L
Sbjct:   125 LDHRPLAEAEKINATGHNLLRYVGGKMSVEMEIPKILWLKNNMPKDLFDRCKFYDLADAL 184

Query:   221 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280
             ++ ATG +TRS C+TVCK  ++           G  D    GW ++F+  IGLGDL++  
Sbjct:   185 THLATGGNTRSFCSTVCKQGFV---------PVGV-DGSVKGWQEDFYHTIGLGDLVEDD 234

Query:   281 HAKIGRSVAFPGHPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES--- 332
               ++G      G  L +G     L+  AA ELGL PG  VG+ +IDA+AG +G + +   
Sbjct:   235 FKRMGGVNGVSGEYLSAGELVGGLSDKAATELGLRPGIAVGSGVIDAYAGWIGTVGAKVN 294

Query:   333 -VPXXXXXXXXXXXXXICH-RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLT 390
               P                 R+  V GTSTCH+A+S+  +F+ GVWGP+   ++P FW+ 
Sbjct:   295 LTPDELDETVAPNDVAQAFTRLAAVAGTSTCHLAMSKEAVFVDGVWGPYRDVLIPGFWMA 354

Query:   391 EGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTE 450
             EGGQSATG L+ ++IE H               ++++ LN  L  M  +  +P ++ L  
Sbjct:   355 EGGQSATGELMRHMIETHAAFVETQAAAVAQGKNIYDYLNEHLRQMASKVQAPSISWLAR 414

Query:   451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
                   D  GNRSP+ADP  +G I GM+ D +   LALLY +T++ IA  TR IVE  N 
Sbjct:   415 HFFFYGDLWGNRSPVADPNMRGAIVGMSSDKTADSLALLYYSTMEFIALQTRQIVETMNK 474

Query:   511 HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE------NESXXXXXXXXXXXXXK 564
              GH I ++   G   +N + +   A      +++PR       + +              
Sbjct:   475 AGHSISSIFMSGSQCQNEILMDLIATACRMHVLIPRYVNAAVVHGAAMLGAKAASADAEG 534

Query:   565 RYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL 620
             +   L   M  M+  G++++P++D  + K  DAKY IF E    Q   R  + +A+
Sbjct:   535 KTEDLWSIMDRMSKPGRLVNPAQDQALSKLLDAKYEIFLEQCRSQQEYRRQVDKAI 590

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BNF8 FGGY "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 164/355 (46%), Positives = 222/355 (62%)

Query:   262 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 321
             GWDD FW+ +GL DL+  +++KIG  V  PG  LGSGLTP AAK+LGL PG  V  SLID
Sbjct:   200 GWDDSFWKMVGLEDLVTDNYSKIGNQVLPPGASLGSGLTPEAAKDLGLPPGIAVAASLID 259

Query:   322 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 381
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S+N +F+PGVWGP++S
Sbjct:   260 AHAGGLGVIGA--DVKGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFS 317

Query:   382 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 441
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   318 AMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQAKATARGQSVYAYLNSHLDLI--KKA 375

Query:   442 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 501
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+ L      LA+LYLATVQ IA+GT
Sbjct:   376 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIAFGT 434

Query:   502 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 561
             R I+E   + GH I TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   435 RLIIEAMESAGHSISTLFLCGGLSKNPLFVQMHADITGLPVVLSQEVESVLVGAAVLGAC 494

Query:   562 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 616
                 ++S+ EAM  M+  G+V+ P  + K  +Y+D KY +F +L E Q    +IM
Sbjct:   495 ASGDFASVQEAMAKMSKVGKVVFPRHEDK--RYYDKKYQVFLKLVEHQKEYAAIM 547

GO:0070050 "neuron homeostasis" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

MGI|MGI:1922828 Fggy "FGGY carbohydrate kinase domain containing" [Mus musculus (taxid:10090)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 165/355 (46%), Positives = 220/355 (61%)

Query:   262 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 321
             GWDD FW+ IGL DLID +++KIG  V  PG  LG GLTP AA+ELGL  G  V  SLID
Sbjct:   202 GWDDSFWKMIGLEDLIDDNYSKIGNLVLLPGAALGIGLTPEAARELGLPSGIAVAASLID 261

Query:   322 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 381
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   262 AHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPVFVPGVWGPYYS 319

Query:   382 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 441
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   320 AMVPGFWLNEGGQSVTGKLIDHMVQGHPAFPELQAKATARCQSIYAYLNSHLDLI--KKA 377

Query:   442 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 501
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+TL      LA+LYLATVQ IA+GT
Sbjct:   378 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSQDLDDLAILYLATVQAIAFGT 436

Query:   502 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 561
             R I+E   A GH + TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   437 RFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGAC 496

Query:   562 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 616
                 ++S+ EAM  M+  G+V+ P    K  KY+D KY +F  + E Q    +IM
Sbjct:   497 ASGDFTSVQEAMARMSKVGKVVFPEHADK--KYYDKKYQVFLRMVEHQKEYSAIM 549

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0070050 "neuron homeostasis" evidence=ISO

UNIPROTKB|Q96C11 FGGY "FGGY carbohydrate kinase domain-containing protein" [Homo sapiens (taxid:9606)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 163/355 (45%), Positives = 220/355 (61%)

Query:   262 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 321
             GWDD FW+ IGL D +  +++KIG  V  PG  LG+GLTP AA++LGL+PG  V  SLID
Sbjct:   201 GWDDSFWKMIGLEDFVADNYSKIGNQVLPPGASLGNGLTPEAARDLGLLPGIAVAASLID 260

Query:   322 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 381
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   261 AHAGGLGVIGA--DVRGHGLICEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFS 318

Query:   382 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 441
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   319 AMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQVKATARCQSIYAYLNSHLDLI--KKA 376

Query:   442 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 501
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+ L      LA+LYLATVQ IA GT
Sbjct:   377 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIALGT 435

Query:   502 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 561
             R I+E   A GH I TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   436 RFIIEAMEAAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAVLGAC 495

Query:   562 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 616
                 ++S+ EAM  M+  G+V+ P    K  KY+D KY +F +L E Q    +IM
Sbjct:   496 ASGDFASVQEAMAKMSKVGKVVFPRLQDK--KYYDKKYQVFLKLVEHQKEYLAIM 548

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0070050 "neuron homeostasis" evidence=IMP

UNIPROTKB|F1LSP9 Fggy "Protein Fggy" [Rattus norvegicus (taxid:10116)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 163/355 (45%), Positives = 220/355 (61%)

Query:   262 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 321
             GWDD FW+ IGL DLI  ++ KIG  V  PG  LGSGL P AA+ELGL  G  V  SLID
Sbjct:   202 GWDDSFWKMIGLEDLIGDNYNKIGNLVLPPGASLGSGLIPEAARELGLPSGIAVAASLID 261

Query:   322 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 381
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   262 AHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFS 319

Query:   382 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 441
             AMVP FWL EGGQS TG L+D+++++H               S++  LN  L+ +  ++ 
Sbjct:   320 AMVPGFWLNEGGQSVTGKLIDHMVQSHPAFPELQAKATARCQSIYAYLNSHLDLI--KKA 377

Query:   442 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 501
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+TL      LA+LYLAT+Q IA+GT
Sbjct:   378 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSRDLDDLAVLYLATIQAIAFGT 436

Query:   502 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 561
             R I+E   A GH + TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   437 RFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGAC 496

Query:   562 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 616
                 ++S+ EAM  M+  G+V+ P +  K  KY+D KY +F  + E Q    +IM
Sbjct:   497 ASGDFASVQEAMARMSKVGKVVFPERADK--KYYDKKYQVFLRMVEHQKEYSAIM 549

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0070050 "neuron homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2AJL3	FGGY_MOUSE	2, ., 7, ., 1, ., -	0.4893	0.8615	0.9692	yes	no
Q6NUW9	FGGY_DANRE	2, ., 7, ., 1, ., -	0.4590	0.8631	0.9834	yes	no
Q96C11	FGGY_HUMAN	2, ., 7, ., 1, ., -	0.4850	0.8695	0.9800	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	621
cd07782	536	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu	0.0
TIGR01315	541	TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki	0.0
COG1069	544	COG1069, AraB, Ribulose kinase [Energy production	0.0
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	1e-120
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	1e-105
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	5e-88
PRK04123	548	PRK04123, PRK04123, ribulokinase; Provisional	6e-82
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	4e-81
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	8e-79
TIGR01234	536	TIGR01234, L-ribulokinase, L-ribulokinase	2e-59
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	7e-58
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	6e-57
pfam02782	193	pfam02782, FGGY_C, FGGY family of carbohydrate kin	9e-54
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	9e-48
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	3e-42
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	1e-40
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	2e-37
cd07809	487	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup	3e-30
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	2e-28
cd07774	430	cd07774, FGGY_1, uncharacterized subgroup; belongs	7e-28
cd07811	493	cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup	2e-27
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	9e-26
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	1e-25
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	9e-23
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-19
TIGR01314	505	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	3e-19
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	5e-18
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	1e-17
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	4e-17
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	4e-16
cd07810	490	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup	2e-15
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	2e-15
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	1e-13
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	6e-12
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	2e-11
PRK10939	520	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P	2e-11
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	3e-11
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	5e-11
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	5e-11
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	6e-11
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	8e-11
PRK10331	470	PRK10331, PRK10331, L-fuculokinase; Provisional	2e-09
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	2e-08
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	2e-08
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	8e-08
PRK10331	470	PRK10331, PRK10331, L-fuculokinase; Provisional	3e-07
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	4e-07
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	4e-07
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	6e-07
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	2e-06
PLN02295	512	PLN02295, PLN02295, glycerol kinase	2e-06
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	5e-06
PRK10939	520	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P	7e-06
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	2e-05
PLN02295	512	PLN02295, PLN02295, glycerol kinase	3e-05
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	3e-05
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	9e-05
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	1e-04
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	1e-04
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	2e-04
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	7e-04
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	0.001
cd07798	437	cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-lik	0.002
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	0.004

>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

 Score =  901 bits (2330), Expect = 0.0
 Identities = 320/558 (57%), Positives = 402/558 (72%), Gaps = 25/558 (4%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVGTGSARAGLFD  G+LL  A  PIQIW    D +EQSS DIW A+C AV +A +
Sbjct: 3   YIGVDVGTGSARAGLFDAKGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAAIA 62

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
            A VD E+VKG+GF ATCSLV +D +G P+SVS +GD+ +NIIVWMDHRA+ +AE+IN+ 
Sbjct: 63  GAGVDPEQVKGIGFDATCSLVVLDKEGQPLSVSPSGDNEQNIIVWMDHRAISEAERINAT 122

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 235
             PVL+Y GG +SPEM+ PKLLW+KENL E+WS   ++ DL D+L++RATG +TRSLCT 
Sbjct: 123 GHPVLKYVGGVISPEMETPKLLWLKENLPETWSRAGKFFDLPDFLTWRATGSETRSLCTL 182

Query: 236 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 295
           VCKWTYL H              E  GWDD+F E IGL DL++ + AKIG  V  PG PL
Sbjct: 183 VCKWTYLAH--------------EKKGWDDDFLEAIGLEDLVEENFAKIGEDVLPPGEPL 228

Query: 296 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 355
           G+GLT  AA ELGL PGTPVG  LIDAHAGG+GV+ +           E + +  R+ L+
Sbjct: 229 GNGLTAEAAAELGLPPGTPVGAGLIDAHAGGIGVLGADLS------GCEADDLTSRLALI 282

Query: 356 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 415
           CGTSTCHMA+S + +F+PGVWGP++SAMVP  WL EGGQSATGALLD+II++H A   L 
Sbjct: 283 CGTSTCHMALSPDPVFVPGVWGPYFSAMVPGLWLNEGGQSATGALLDHIIQSHPAFPELK 342

Query: 416 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 475
            +A    +S++  LN  LE +  E+ S   A LT D+HVLPDFHGNRSP+ADP  +G+I 
Sbjct: 343 EQAGESGISIYAYLNARLEELAAEKGSV--AYLTRDLHVLPDFHGNRSPLADPNLRGVIS 400

Query: 476 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 535
           G+TLD+S   LA LYLAT+Q IAYGTRHI+E  NA GHKIDTL ACGGL+KNPLF+Q HA
Sbjct: 401 GLTLDTSLDDLARLYLATLQAIAYGTRHIIEAMNAAGHKIDTLFACGGLSKNPLFVQLHA 460

Query: 536 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 595
           D  G P++LP+E E+VLLGAA+LGAVAA  + SL EAM AM+  G+ + P  + ++K YH
Sbjct: 461 DATGLPVVLPKEEEAVLLGAAMLGAVAAGDFPSLKEAMAAMSRPGRTVKP--NTELKAYH 518

Query: 596 DAKYLIFRELFEQQVSQR 613
           D KY +F ++ E Q   R
Sbjct: 519 DRKYRVFLKMQEHQREYR 536

This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536

>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase

 Score =  596 bits (1538), Expect = 0.0
 Identities = 249/558 (44%), Positives = 346/558 (62%), Gaps = 19/558 (3%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVGTGSARA + D +G +L  A+  I+ W        QSS  IW AIC  V    +
Sbjct: 2   YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLA 61

Query: 116 LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
            + VD   VKG+GF ATCSLV +  DG P+ VS NG + +NII+WMDHRA+ +AEKIN+ 
Sbjct: 62  ESKVDPNSVKGIGFDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINAT 121

Query: 176 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 235
           N  +L+Y GG +S EM+ PK+LW+K N+        ++ DL+D+L++RATG + RS C+ 
Sbjct: 122 NHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEIRSFCSV 181

Query: 236 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 295
           VCKW ++                   GW ++F+E IGLG+L+  +  ++G S   PG  +
Sbjct: 182 VCKWGFVPVD------------GSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELV 229

Query: 296 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 355
           G GLT  AA+ELGL  GT VG+ LIDAHAG +G   +V   V+E  +  +     R+  V
Sbjct: 230 GGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIG---TVGAKVAENGDVSQ--AFTRLAAV 284

Query: 356 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 415
            GTSTCHMA+++  +F+PGVWGP+  A++P +WL EGGQSA G L+D+++E HVA     
Sbjct: 285 AGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETV 344

Query: 416 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 475
             A +   ++++ LN  L+ M  + N+P ++ L    HV PD  GNRSPIADP  +G+I 
Sbjct: 345 KEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVII 404

Query: 476 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 535
           G+++D S+  LALLY AT++ IAYGTR IVE  N  GH I ++   GG  +NPL +Q  A
Sbjct: 405 GLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIA 464

Query: 536 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 595
           D    P+++P  NE+VL GAA+LGA AA    SL +AM  M+  G+ + P  DP  KK H
Sbjct: 465 DACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWPRGDPA-KKLH 523

Query: 596 DAKYLIFRELFEQQVSQR 613
           D KY IF +L   Q   R
Sbjct: 524 DRKYEIFLQLARTQQEYR 541

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541

>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion]

 Score =  565 bits (1458), Expect = 0.0
 Identities = 234/567 (41%), Positives = 327/567 (57%), Gaps = 36/567 (6%)

Query: 53  SRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAV 110
             +  +GVDVGTGSARAG+FD   G LL  A  P  +W+ G +  EQ S D W A+CAAV
Sbjct: 1   MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAV 60

Query: 111 DSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
               + A VD  +V G+G  ATCSLV +D DG+P++V     +  N+I+WMDHRAV++AE
Sbjct: 61  RDVVAKAGVDPADVVGIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAE 120

Query: 171 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 230
           +IN+   PVL Y GG +SPEM  PKL+W+K      W       DL+DWL+++ TG   R
Sbjct: 121 EINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIAR 180

Query: 231 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 290
           S CT  CKW +L H              E   W  +F+++IGL DL +   +K+   +  
Sbjct: 181 SRCTAGCKWNWLEH--------------EGGLWSADFFDKIGLDDLRE-LDSKLPEDIVP 225

Query: 291 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH 350
            G P+G GLTP AA+ELGL  GT V   +IDAHAG VGV          A+         
Sbjct: 226 AGEPVG-GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVG--------GAQPG------- 269

Query: 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 410
            + ++ GTSTCHM +S    F+PGVWGP+  A++P  WL EGGQSATG LLD+++  H A
Sbjct: 270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPA 329

Query: 411 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 470
                         ++E L   LE +     +  +  L   +HVL  F+GNRSP+ADP+ 
Sbjct: 330 PLEQLAAHPKDGEEIYESLAQRLELL--TEAAAAIPPLASGLHVLDWFNGNRSPLADPRL 387

Query: 471 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 530
           KG+I G+TLD+S + LALLY A ++  A+GTR I+E     G  IDTL A GG+ KNPL 
Sbjct: 388 KGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLL 447

Query: 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPK 590
           +Q +AD+ G P+++P  +++VLLGAA+  AVAA  +  L  A +AM++A +   P   P+
Sbjct: 448 MQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLPP-PPE 506

Query: 591 VKKYHDAKYLIFRELFEQQVSQRSIMA 617
               ++  Y  + +L +      + + 
Sbjct: 507 RAARYERLYRRYLQLHDDAEKHYARVM 533

Length = 544

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  365 bits (939), Expect = e-120
 Identities = 179/527 (33%), Positives = 256/527 (48%), Gaps = 67/527 (12%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE--GDCIEQSSTDIWHAICAAVDS 112
              +GVDVGT S RAG+FD +G+ L SAS P  +         EQ   D W A+  AV +
Sbjct: 1   KYVIGVDVGTESVRAGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRA 60

Query: 113 ACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171
           A + A VD ++V  +G  AT C++V +DA+G P+            ++W DHRA  QA  
Sbjct: 61  AVAAAGVDPDQVAALGVDATSCTVVPLDAEGQPL---------TPALLWDDHRAADQANA 111

Query: 172 INSRNSPVLQ-YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 230
           IN    P L  Y G  VSPE   PK+LW+ +   ++W+    +++  DWL +R TG    
Sbjct: 112 INEVGGPALWDYGGKIVSPEWMLPKVLWLLQEAPDTWNRADHFLEAPDWLGWRLTGKRPV 171

Query: 231 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 290
           + C+ V KW Y                     W +  ++++G   L     AK+   VA 
Sbjct: 172 ATCSAVAKWGYDAREG---------------EWANSVFDKLGDPRL---TAAKLPAVVA- 212

Query: 291 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH 350
           P    G GL P AA++ GL PGT V   + DAHAG + V    P                
Sbjct: 213 PLTRAG-GLLPEAAEKTGLPPGTAVAVGMTDAHAGQIAVGVVTPG--------------- 256

Query: 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 410
           R VLV GTS  H  VS        + G  +SA++P +W  EGGQSATG +  + ++    
Sbjct: 257 RFVLVLGTSIVHKGVSEELHED-EMCGAVYSAILPGYWWLEGGQSATGGIFLWFVDVGRL 315

Query: 411 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 470
           + +  + A  + V+L                          +  L  F+GNRSP  DP+ 
Sbjct: 316 AATF-DEAQEKGVALDAAAA-------------ERGPQLRGLLALDRFNGNRSPFVDPEL 361

Query: 471 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK-IDTLLACGGLAKNPL 529
           +G + G+TL +     A +Y A ++ +A+GTR IVE  +  G+  +  L A GG A++ L
Sbjct: 362 RGFLLGLTLPTDR---ADIYRALLEAVAFGTRLIVEAFHGLGYPEVGPLYAAGGGARSHL 418

Query: 530 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 576
           ++Q HAD+ G P+ L  E E+  LGAA+L AVAA  Y  L EA  AM
Sbjct: 419 WMQIHADVTGRPVRLAAEKEAPALGAALLAAVAAGHYEDLPEAAAAM 465

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score =  325 bits (835), Expect = e-105
 Identities = 178/552 (32%), Positives = 267/552 (48%), Gaps = 80/552 (14%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI-WKEGDCIEQSSTDIWHAICAAVDSAC 114
             LG+D GT S RAGLFD +G+ LGSA++P           EQ+  D W A+ AAV  A 
Sbjct: 2   YVLGIDGGTESVRAGLFDTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREAL 61

Query: 115 SLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI- 172
           + A +   +V  +    T C++VA+DA G+P+         R  I+WMD RA ++A ++ 
Sbjct: 62  AEAGIAAPDVAALCCDTTCCTVVALDAAGTPL---------RPAILWMDVRAAEEAARVL 112

Query: 173 -NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 231
               ++  L   GG VS E   PK +W+K+N  + ++      +  D+L++R TG    S
Sbjct: 113 ATGDDALRLNGSGGGVSAEWMVPKAMWLKKNEPDVYARAATICEAQDYLNFRLTGRWCGS 172

Query: 232 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291
           L     +W Y               D    G  ++ +  +G+ DL+D    K+ + V   
Sbjct: 173 LNNAAVRWNY---------------DTLNGGPPEDLYAALGMPDLLD----KLPQRVLAV 213

Query: 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 351
           G  +GS LT  AA  LGL  GTPV     DA  G +G+    P                +
Sbjct: 214 GEVVGS-LTDEAAAHLGLPGGTPVAQGGADAFVGMIGLGVIEP---------------GQ 257

Query: 352 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN---- 407
           M L+ G+S  H+ V+  +   PGVWG +  A+ P  WL EGGQ++TG++L +  +     
Sbjct: 258 MALITGSSHLHLGVTDREFHAPGVWGTYPDAVYPGTWLVEGGQTSTGSVLKWFKDLIGGG 317

Query: 408 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
                   N  A+                        V   +E + VL  F GNR+P  D
Sbjct: 318 DDNGYDELNEEAAA-----------------------VPPGSEGLVVLDYFQGNRTPYTD 354

Query: 468 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 527
           P ++G I G+TL  +    A +Y A ++G+AYGTRHI +   A G+++  ++A GG  ++
Sbjct: 355 PLARGAIWGLTLGHTR---AHVYRAILEGVAYGTRHIFDAMEAAGYEVSEIVAAGGATRS 411

Query: 528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSK 587
            L+LQ HAD+IG P  L  E ++ LLG AIL AV A  ++ L EA  AM    +VI P  
Sbjct: 412 RLWLQIHADVIGVPFELTEETDAPLLGCAILAAVGAGIFADLTEAADAMVRPERVIEP-- 469

Query: 588 DPKVKKYHDAKY 599
           DP+  + +    
Sbjct: 470 DPERHEEYARYL 481

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score =  282 bits (723), Expect = 5e-88
 Identities = 155/543 (28%), Positives = 235/543 (43%), Gaps = 72/543 (13%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE--------QSSTDIWHAICA 108
           +G+D GT S RA L D E+G  L SA         G+ +         Q   D    +  
Sbjct: 4   IGLDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLET 63

Query: 109 AVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSV--SWNGDSRRNIIVWMDHRA 165
           A+      A VD ++V G+G   T  + + VD DG+P+ +   +  +    + +W DH A
Sbjct: 64  AIPEVLKEAGVDPDDVVGIGVDTTGSTPIPVDEDGTPLCLLPEFKNNPHAYVKLWKDHTA 123

Query: 166 VKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 221
            K+A++I +    R    L+Y GG  S E   PK+L V     E +     W++  DW+ 
Sbjct: 124 QKEADRITALAHERGEDYLRYYGGVYSSEWFWPKILHVLREAPEVYEAADSWVEACDWIP 183

Query: 222 YRATGDD-----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLG 274
            + TG        RS C         GH  M      G          DEF   +   L 
Sbjct: 184 AQLTGTTDPKKLKRSRCA-------AGHKAMWHEEWGGLPS-------DEFLSALDPKLA 229

Query: 275 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVP 334
            + D    K+   +   G   G GL+P  A  LGL  G  V     DAH G VG      
Sbjct: 230 GVRD----KLSGPIYTSGEKAG-GLSPEWAARLGLPEGIAVAVGAFDAHMGAVGA----- 279

Query: 335 ESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 394
                A+          +V V GTSTC + ++     +PG+ G    +++P +   E GQ
Sbjct: 280 ----GAEPGT-------LVKVIGTSTCDIMLAEKVGDVPGICGVVDGSIIPGYIGYEAGQ 328

Query: 395 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 454
           SA G +  + +EN V S      A  R   +  LL+              +      +  
Sbjct: 329 SAVGDIFAWFVENLVPSLYEEE-AKRRGDEVLPLLSEKAAK---------LPPGESGLLA 378

Query: 455 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 514
           L  ++GNR+ + D +  G+I G+TL +       +Y A ++  A+G R I+E     G  
Sbjct: 379 LDWWNGNRTVLVDQRLTGLILGLTLQTKA---EEIYRALIEATAFGARAIIERFEEQGVP 435

Query: 515 IDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAM 573
           ++ ++A GG+A KNPL +Q +AD++  PI +    ++  LGAAI  AVAA  Y ++ EA 
Sbjct: 436 VERVIAAGGIAQKNPLLMQIYADVLNRPIKVVASEQTCALGAAIFAAVAAGVYPTIEEAQ 495

Query: 574 KAM 576
            AM
Sbjct: 496 AAM 498

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional

 Score =  267 bits (685), Expect = 6e-82
 Identities = 161/576 (27%), Positives = 250/576 (43%), Gaps = 74/576 (12%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE-------QSSTDIWHAICAA 109
           +G+D GT S RA L D  +G+ L +A      W +G  ++       Q   D   ++ AA
Sbjct: 6   IGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAA 65

Query: 110 VDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRN--IIVWMDHRAV 166
           + +    A VD   V G+G   T  +   VDADG+P+++        +  + +W DH A 
Sbjct: 66  IPAVLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQ 125

Query: 167 KQAEKIN----SRNSPVLQ-YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 221
           ++AE+IN     R    L  Y GG  S E    K+L V       +     W++  DW+ 
Sbjct: 126 EEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVV 185

Query: 222 YRATGDDT-----RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLG 274
              TG        RS C         GH  +   +  G           +F++ +   L 
Sbjct: 186 ALLTGTTDPQDIVRSRCA-------AGHKALWHESWGGLPS-------ADFFDALDPLLA 231

Query: 275 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVP 334
             +     K+       G P G  LT   A+ LGL  G  V     DAH G VG      
Sbjct: 232 RGLRD---KLFTETWTAGEPAG-TLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA----- 282

Query: 335 ESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 394
                A+          +V V GTSTC + ++  +  +PG+ G    ++VP     E GQ
Sbjct: 283 ----GAEPGT-------LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQ 331

Query: 395 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 454
           SA G +  +     V      + A +R   L ELL          +  P    L      
Sbjct: 332 SAVGDIFAWFARLLV-PPEYKDEAEARGKQLLELLTEAAA-----KQPPGEHGLV----A 381

Query: 455 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 514
           L  F+G R+P+AD + KG+I G+TL +    +   Y A ++  A+GTR I+E     G  
Sbjct: 382 LDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQGVP 438

Query: 515 IDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAM 573
           ++ ++A GG+A KNP+ +Q +AD++  PI +   ++   LGAAI  AVAA  Y  + EA 
Sbjct: 439 VEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQ 498

Query: 574 KAMNAA-GQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608
           +AM +   +   P  DP+    ++  Y  +++L + 
Sbjct: 499 QAMASPVEKTYQP--DPENVARYEQLYQEYKQLHDY 532

Length = 548

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  263 bits (675), Expect = 4e-81
 Identities = 157/563 (27%), Positives = 245/563 (43%), Gaps = 88/563 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQI------WKEGDCIEQSSTDIWHAICAAV 110
            LG+D+GT S +A LFD  G++L  AS   ++      W      EQ     W A+C  +
Sbjct: 2   LLGIDIGTSSTKAVLFDLDGEVLAQASREYELSTPQPGW-----AEQDPEVWWDAVCEII 56

Query: 111 DSACSLANVDGEEVKGVGF-AATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
               + A VD  E+K +G      ++V VD DG P+         R  I++MD RA ++ 
Sbjct: 57  RELVAKAGVDPSEIKAIGVSGQGPTVVPVDKDGRPL---------RPAIIYMDRRAKEEV 107

Query: 170 EKINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 227
           E++  R     + +  G  +  +   PK+LW K N  E W    +++  + ++ Y+ TG 
Sbjct: 108 EELKERIGEEEIFERTGNPLDSQYVAPKILWFKRNEPEVWERTRKFLQSNSYIVYKLTG- 166

Query: 228 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287
                       +          +  G  D+    W +E  + +G+ + +     K+ R 
Sbjct: 167 ------ELAVDHS--------SASGSGLYDIRKGEWSEELLDLLGIPEDL---LPKLVR- 208

Query: 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEE 345
              PG  +G  +T  AA+E GL  GTPV     DA A   G GV+E              
Sbjct: 209 ---PGDIVG-TVTEEAAEETGLPAGTPVVAGGADAAAAALGAGVVE-------------- 250

Query: 346 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 405
                  + + GTS   + V+    F P +       +VP  +L  GG S  GA L +  
Sbjct: 251 ---PGDAMEMLGTSGVIIVVTDRPKFDPRLI--SSPHVVPGTYLLNGGMSTGGAALRWFR 305

Query: 406 ENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 465
           +N               +  ++ L    E          V    + +  LP   G R+PI
Sbjct: 306 DN------FGPEETEGGLDAYDELEEEAEK---------VPPGADGLLFLPYLAGERTPI 350

Query: 466 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA 525
            DP ++G+  G+TL  +    A LY A ++G+AY  RHI+E     G K+  ++A GG A
Sbjct: 351 WDPDARGVFFGLTLGHTR---AHLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGA 407

Query: 526 KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 585
           K+ L++Q  AD++G P++ P       LG A+L AVA   Y  L E  KA     + I P
Sbjct: 408 KSRLWMQIKADVLGLPVVTPENTVGASLGDALLAAVAVGVYDDLEEV-KAWVKVRETIEP 466

Query: 586 SKDPKVKKYHDAKYLIFRELFEQ 608
             DP+  + +D  Y I+REL+  
Sbjct: 467 --DPENHEIYDEYYEIYRELYPA 487

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score =  256 bits (655), Expect = 8e-79
 Identities = 137/508 (26%), Positives = 211/508 (41%), Gaps = 79/508 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--KEGDCIEQSSTDIWHAICAAVDSAC 114
            LG+DVGT S +A LFDE G +L  AS   ++   K G   EQ   +IW A+C  +    
Sbjct: 2   ILGLDVGTTSVKAVLFDEQGNILAEASREYEVSYPKPGWV-EQDPEEIWQALCEVL--RE 58

Query: 115 SLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
           + A   G ++  +G ++    ++ VDA+G P+            I+W D R  ++ E++ 
Sbjct: 59  AAAQASGGQIAAIGVSSQGEGVILVDANGRPL---------TPAILWQDSRTAEECERLE 109

Query: 174 SRNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 231
            +      Y   G    P    PKLLW+KE+  E +S   + + ++D+L+YR TG+    
Sbjct: 110 EQIGADEIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKADKILTVADYLAYRLTGEFVID 169

Query: 232 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291
                    +              RD     WD E      L +        +   V  P
Sbjct: 170 YSNASRTMLFDIQT----------RD-----WDPE------LLEAAGIPRELLPE-VVPP 207

Query: 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 351
           G   G+ ++  AA  LGL PGTPV     D     +G                +E     
Sbjct: 208 GEVAGA-ISAEAAALLGLPPGTPVVAGGHDQQCAALGAGA------------VDEGDA-- 252

Query: 352 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVAS 411
             L  GTS    AVS  +         + +A +P  ++TE      GALL +  +     
Sbjct: 253 -ALSAGTSEVITAVSEPEPATDEGLLCYPAA-IPGKYVTEASFFTGGALLRWFRDEFGLR 310

Query: 412 RSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 471
                       S +E                   +    + +LP F G+ +P  DP ++
Sbjct: 311 ED---------GSDYEAAAQEAP-----------NSGPNGLLILPHFSGSGTPYWDPAAR 350

Query: 472 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL 531
           G I G+TL ++    A +Y A ++GIAY  R  ++   A G KID +   GG +++ L+L
Sbjct: 351 GAIFGLTLGTT---RADIYRALLEGIAYELRDNLDALEAAGIKIDRIRVTGGGSRSDLWL 407

Query: 532 QQHADIIGCPIILPRENESVLLGAAILG 559
           Q  ADI G P+  P   E+  LGAA+L 
Sbjct: 408 QILADIFGLPVETPEVREAGALGAALLA 435

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase

 Score =  207 bits (528), Expect = 2e-59
 Identities = 153/544 (28%), Positives = 244/544 (44%), Gaps = 68/544 (12%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEG------------DCIEQSSTDIWH 104
           +GVD GT S RA   D  +G+ + +A    + W +G            D   Q   D   
Sbjct: 4   IGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIE 63

Query: 105 AICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRN--IIVWM 161
            + AA+ +  +   VD  +V G+G   T C+   +D+DG+P+ +        +    +W 
Sbjct: 64  VLEAAIPTVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWK 123

Query: 162 DHRAVKQAEKIN----SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 217
            H A ++A++IN    +     L   GG +S E    K+L + E     +    RW++L+
Sbjct: 124 HHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELA 183

Query: 218 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIGLGDL 276
           DW+  + +GD  R  CT        G+  +           E+ G+    F++E+    L
Sbjct: 184 DWIVAQLSGDIRRGRCTA-------GYKALWH---------ESWGYPSASFFDELNPI-L 226

Query: 277 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPES 336
                 K+   +   G P G+ LTP  A+  GL  G  V     DAH G V    + P  
Sbjct: 227 NRHLPDKLFTDIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQP-- 283

Query: 337 VSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSA 396
                          +V + GTSTCH+ +   +  +PG+ G     +VP F   E GQSA
Sbjct: 284 -------------GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSA 330

Query: 397 TGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLP 456
            G +  +  +  V    L   A +    L E L+   E+   +       +    +  L 
Sbjct: 331 VGDIFAWFGKVCV-PPELKTEANASQKQLHEALS---EAAAKQ------PSGEHGLVALD 380

Query: 457 DFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID 516
            F+GNRSP+ D + KG+I G+TL +      LLY A ++  A+GTR I+E     G  ++
Sbjct: 381 WFNGNRSPLVDQRLKGVITGLTLATDAP---LLYRALIEATAFGTRMIMETFTDSGVPVE 437

Query: 517 TLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKA 575
            L+A GG+A KNP+ +Q +AD+   P+ +   +++  LGAAI  AVAA  Y+ +  A   
Sbjct: 438 ELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAK 497

Query: 576 MNAA 579
           M +A
Sbjct: 498 MGSA 501

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli [Energy metabolism, Sugars]. Length = 536

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score =  202 bits (515), Expect = 7e-58
 Identities = 146/574 (25%), Positives = 219/574 (38%), Gaps = 86/574 (14%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
              LG+D+GT S +A LFDE  G+++ +A         +    EQ   ++W AI  A+  
Sbjct: 4   KYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQ 63

Query: 113 ACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171
               + +D + +  +G +     LV +DA+G P+         R  I+W D RA ++ E+
Sbjct: 64  LLEESKIDPDAIAAIGISGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEE 114

Query: 172 INSRNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG--- 226
           +  R      Y   G    P    PKLLW+KEN  + ++   + + + D+L YR TG   
Sbjct: 115 LEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA 174

Query: 227 DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 286
            +      T                  G  D+    WD E    +GL          +  
Sbjct: 175 TEISDASGT------------------GLLDIRTRKWDWELLAALGLP-----ERDLLPP 211

Query: 287 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENE 344
            V  PG  LG  LTP AA+ELGL  GTPV     D  A   G G ++    S S      
Sbjct: 212 VVE-PGEVLG-TLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSST----- 264

Query: 345 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 404
                       GTS    A +   L  P     +   +    W    G + TG  L   
Sbjct: 265 ------------GTSGVVRAATDKPLDDPRGSI-YTFCLGLPGWFIVMGANNTGGWLL-- 309

Query: 405 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 464
                              S  ELL   L           +         LP   G R P
Sbjct: 310 --------EWLRELFGLAESYPELLEEALAVPAPAGAIGLLF--------LPYLSGERGP 353

Query: 465 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG 523
            ADP ++G   G+TL  +    A L  A ++G+A+     +E      G     +   GG
Sbjct: 354 HADPAARGGFVGLTLPHT---RAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGG 410

Query: 524 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVI 583
            A++PL+LQ  AD +G P+++P   E+  LG A L A A        E         + I
Sbjct: 411 GARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVDARRI 470

Query: 584 HPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMA 617
            P  DP+    +   Y  +R L++  ++    ++
Sbjct: 471 IP--DPERAAAYQELYERYRALYQALLALYRQLS 502

Length = 502

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  200 bits (510), Expect = 6e-57
 Identities = 141/572 (24%), Positives = 234/572 (40%), Gaps = 87/572 (15%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQI-WKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D+GT   +A L    G+L+ SA+   +  +  G   EQ   D W A+  A       
Sbjct: 3   LAIDLGTSGVKAALVSPDGRLVASATEAYETHYLPGGGAEQDPEDWWDAVVRATRRLLED 62

Query: 117 ANVDGEEVKGVGFAATCS-LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           + V+   V G+ F+     +V VD DG P+         R  I+WMD RA  +AE++   
Sbjct: 63  SGVNPRRVAGISFSGQMQGVVPVDEDGRPL---------RPAIIWMDQRAAPEAERLMEG 113

Query: 176 NSPVLQY----------CGGA-VSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 224
              V  Y           GGA  S +    K+LW+++N  + ++  ++++D  D+L+ R 
Sbjct: 114 LGKVAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYKFLDAKDYLNLRL 173

Query: 225 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 284
           TG       T          A +  + +   RD     W +E     G+         K+
Sbjct: 174 TG----RFATDPDD------ASLTWLTDN--RDGRIR-WSEELLAAAGI------DREKL 214

Query: 285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE 344
              V      +G  + P AA+ELGL  GTPV     DA A  VG         + A  + 
Sbjct: 215 PELVP-STDVVG-TVLPEAARELGLPEGTPVVAGGGDASAAAVG---------AGAVADG 263

Query: 345 EEAICHRMVLVCGTS---TCHMAVSRNKLFIPGVWGPF-WSAMVPKFWLTEGGQSATGAL 400
           +  +        GTS     H  V   K  +      F     +P  +L    Q   G  
Sbjct: 264 DAHLY------LGTSSWIATH--VPFPKTDVRH--RIFSLPHAIPGKYLVVAEQETAGGA 313

Query: 401 LDYIIENHV-ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH 459
           L+++ +  +     LA+       S++E L+      +     P    L      LP  H
Sbjct: 314 LEWLKDLLLQDEDGLADEEGR---SVYERLD-----ELAASAPPGSNGLI----FLPWLH 361

Query: 460 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 518
           G RSP+ DP ++G    ++L+++   L     A ++G+A   R ++E      G ++  L
Sbjct: 362 GERSPVEDPNARGGFFNLSLETTRADLL---RAVLEGVALNLRWLLEAVERFLGRRLGEL 418

Query: 519 LACGGLAKNPLFLQQHADIIGCPIILPRENESV-LLGAAILGAVAAKRYSSLIEAMKAMN 577
              GG A++ L+ Q  AD++G PI    + E     GAA + AV     S   +A   + 
Sbjct: 419 RFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAAIAAVGLGLLSF-FDAAGQLV 477

Query: 578 AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 609
              +   P  +P+ +  +D  + +F+EL+ + 
Sbjct: 478 RVDRTFEP--NPENRAVYDELFAVFKELYRRL 507

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain

 Score =  181 bits (462), Expect = 9e-54
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 21/213 (9%)

Query: 352 MVLVCGTSTCHMAVSRN-KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 410
             +  GTS+  +  +    L + GVWGP+ +      W  EGGQSA G+LL ++++   A
Sbjct: 1   AAVSLGTSSFVLVETSEPVLSVHGVWGPYTNEG---GWGLEGGQSAAGSLLGWLLQTLRA 57

Query: 411 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 470
              L +      ++L   L                 A    +  LPDF G R+P ADP +
Sbjct: 58  REELRDAGLVESLALLLALAA--------------DAPAGGLLFLPDFSGERAPGADPHA 103

Query: 471 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 530
           +G I G++  ++   LA LY A ++G+A   R I+E     G  ID ++A GG ++NPL 
Sbjct: 104 RGAITGLSSPTT---LANLYRALLEGLALALRQILEALAELGAPIDRIIASGGGSRNPLL 160

Query: 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAA 563
           LQ  AD +G P+ +P   E+  LGAA+L AVAA
Sbjct: 161 LQLLADALGRPVEVPETAEATALGAALLAAVAA 193

This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  174 bits (442), Expect = 9e-48
 Identities = 139/565 (24%), Positives = 220/565 (38%), Gaps = 100/565 (17%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSAS------SPIQIWKEGDCIEQSSTDIWHAICAAVD 111
           +G+D+GT S +A L +  G+L+  AS      SP   W E     Q   D W A+  A++
Sbjct: 3   IGIDIGTSSVKASLVNLDGELVAFASREYTTSSPHPGWSE-----QDPADWWDAVQRALE 57

Query: 112 SACSLANVDGEEVKGVGFAA-TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
           +    A    E++  +G        V +D  G  +         R  I+W D R+  +  
Sbjct: 58  ALLDQAGDSAEDIAAIGVTGQMHGAVLLDQQGRVL---------RPAILWNDTRSAPEVT 108

Query: 171 KINSRNSPVL-QYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 229
           ++ +R    +    G   +P    PKLLW+KEN  E +  + R +   D++  R TG+  
Sbjct: 109 ELKARLGAEIFSITGNIPTPGWTLPKLLWLKENEPEVFRRIARVLLPKDYIRLRLTGE-- 166

Query: 230 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289
             L T                +     D  +  W D+     G           I   + 
Sbjct: 167 --LATDRS-----------DASGTLLFDAASREWSDDLCALYG-----------IPEDLL 202

Query: 290 FPGHPLGS---GLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESVSEAKENE 344
            P H        +TP AA++ GL  GTPV  G     A A G GV+            + 
Sbjct: 203 PPLHEPSEIAGAVTPEAARKTGLKAGTPVVAGAGDNAAAALGAGVV------------DP 250

Query: 345 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 404
            +A      L  GTS     VS   +  P      ++  VP  W      ++ G+ L + 
Sbjct: 251 GQAS-----LSLGTSGVVAVVSEGPVPDPKGAVITFAHAVPGRWYQVTCTNSAGSALRWA 305

Query: 405 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 464
                  R L   A   +  + EL                V      +  LP  +G R+P
Sbjct: 306 -------RDLLGPADVSYAEMAELAAQ-------------VPVGANGLLFLPYLNGERTP 345

Query: 465 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL 524
             DP ++G   G+TL  +   LA    A ++G+A+  R  +E  +  G     +   GG 
Sbjct: 346 YNDPNARGAFFGLTLSHTRGHLAR---AVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGG 402

Query: 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKA--MNAAGQV 582
           AK+ L+ Q  AD++G P+ LP   E   +GAA+L AV A  ++ L EA +        + 
Sbjct: 403 AKSELWRQILADVLGVPVELPANAEGASVGAALLAAVGAGDFADLNEAARTVRQLPVIEP 462

Query: 583 IHPSKDPKVKKYHDAKYLIFRELFE 607
             P  D +    ++  Y  +R L++
Sbjct: 463 DPP--DAEA---YERAYERYRRLYD 482

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score =  158 bits (403), Expect = 3e-42
 Identities = 142/560 (25%), Positives = 214/560 (38%), Gaps = 97/560 (17%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD--CIEQSSTDIWHAICAAVDSA 113
             L +D GT S RA LFD  G L+     PI+ +        EQ     W A+C A    
Sbjct: 1   YVLAIDCGTQSVRALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACREL 60

Query: 114 CSLANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
                VD   + GV       T   V +D DG P+         R  I+W+D RA +Q  
Sbjct: 61  WEQIPVDPGRIAGVALTTQRETF--VLLDKDGKPL---------RPAILWLDQRAAEQLP 109

Query: 171 KINSRNSPVLQYCGGAVSPEMQPP--KLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD 228
            +      + +  G   + ++ P   K  W++EN  E W+   +++ LS +L+Y+ TG  
Sbjct: 110 PLAWWIRLLFKLIGKPETIDVIPAEAKANWIRENEPEIWAKTAKFLLLSGYLTYKLTGRF 169

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIGLG-------DLIDGH 280
             S+ + V      G+            D +   W   E  +  G         +L+   
Sbjct: 170 VDSVASQV------GY---------IPFDYKKRRWAKKEDLKWQGFPIEPEQLPELVP-- 212

Query: 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID-AHAG-GVGVMESVPESVS 338
                     PG  +G  +T  AA+  GL  GTPV     D A    G G +E  P    
Sbjct: 213 ----------PGKLIG-TITAEAAEATGLPEGTPVIAGGSDKACETLGAGALE--PGIAC 259

Query: 339 EAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAM---VPKFWLTEGGQS 395
                          L  GT T  +  + ++ F P     F+ A    +P  +  E    
Sbjct: 260 ---------------LSLGT-TATVNGTSSRYFEP---DRFFPAYPAVIPGGYNPEIEIF 300

Query: 396 ATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVL 455
               L+ +  E           A    ++   LL+  L+          +   ++ + + 
Sbjct: 301 RGYWLVSWFKEEFGQKEVQ--EAEELGIAPEALLDEALKE---------IPPGSDGLMLQ 349

Query: 456 PDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHK 514
           P +     P  DP+++G I G          A LY A ++GIAY  R  +E      G K
Sbjct: 350 PYWGPG-MPHWDPEARGAIIGF---GDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVK 405

Query: 515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMK 574
           I  L   GG +++ L  Q  ADI G P+  P   E+  LGAAI  AV A  Y    EA+ 
Sbjct: 406 IKKLRVSGGGSQSDLICQITADIFGLPVERPHTYEASGLGAAIAAAVGAGWYPDFAEAVA 465

Query: 575 AMNAAGQVIHPSKDPKVKKY 594
           AM   G+   P  + +V+ Y
Sbjct: 466 AMVRVGKTFEPDPE-RVELY 484

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  153 bits (388), Expect = 1e-40
 Identities = 122/523 (23%), Positives = 202/523 (38%), Gaps = 94/523 (17%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACS 115
            LG+D GT   +A LFD  G+ +  AS     +  +   +EQ   ++W A+ A +     
Sbjct: 2   LLGIDAGTTVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELLE 61

Query: 116 LANVDGEEVKGVGFAATCS-LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI-- 172
            A VD E++ G+G       L  VD +G PV            I+ +D RA +  E+   
Sbjct: 62  KAGVDAEDIAGIGVTGQGDGLWLVDKEGKPV---------GPGILSLDSRAAELVERWQE 112

Query: 173 NSRNSPVLQYCGGAVSPEMQPPKLLWVKEN----LQESWSMVFRWMDLSDWLSYRATGDD 228
           +     + +  G  +        L W+KE+    L  + +++F      DW+ +R TG+ 
Sbjct: 113 DGTEDAIFELTGQGLWAGQPSSLLAWLKEHEPERLARAGTVLF----CKDWIRFRLTGE- 167

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
                T                +     D+    +DDE  + +GL ++ D          
Sbjct: 168 ---AATDPT-----------DASGSSLLDLRTGQYDDELLDLLGLEEIRD---------- 203

Query: 289 AFP----GHPLGSGLTPAAAKELGLVPGTPVGTSLID--AHAGGVGVMESVPESVSEAKE 342
             P       +   LT  AA   GL  GTPV   L D  A A G G+             
Sbjct: 204 LLPPIVDSADIVGTLTAEAAALTGLPAGTPVVGGLFDVVACALGSGL------------- 250

Query: 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL-L 401
            +E  +C     + GT + +  +S + +     +G     + P ++L E   S T A  L
Sbjct: 251 VDEGDLC----SIAGTWSINEVLSDDPVPEAEPFGY-SLYLPPGYYLVEES-SPTSASNL 304

Query: 402 DYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH-G 460
           D+ +   +        A +   SL+ LLN  + +       P++            F   
Sbjct: 305 DWFLRTLLEDE----AAKASGGSLYALLNRLVAA-APPEYHPYL------------FEPF 347

Query: 461 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 520
            R    DP ++    G++   +   L     A  +G+A+  R  +E   A       +  
Sbjct: 348 LRGSNVDPNARAGFFGLSAWHTRADLVR---AVYEGVAFAHRDHLEALRAT-GLPGEIRL 403

Query: 521 CGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563
            GG A++P++ Q  AD++G P+ +    E   LGAAI  AVA 
Sbjct: 404 TGGAARSPVWAQMFADVLGLPVEVVEGEELGALGAAIAAAVAL 446

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score =  145 bits (367), Expect = 2e-37
 Identities = 142/560 (25%), Positives = 231/560 (41%), Gaps = 89/560 (15%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSL 116
           LG+D+GT   +A L DE G+++ S S+P  +        EQ   D W A   A+      
Sbjct: 1   LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ 60

Query: 117 ANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           A+  G+++KG+G +     LV +DA+G  +         R  I+W D R  ++ E++ + 
Sbjct: 61  ASEMGQDIKGIGISGQMHGLVLLDANGEVL---------RPAILWNDTRTAQECEELEAE 111

Query: 176 --NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
             +  VL+  G    P    PKLLWV+++  E ++ + + M   D+L YR TG+      
Sbjct: 112 LGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGE------ 165

Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
                            +  G+ D+    W  E      L D +D   +++   +     
Sbjct: 166 ---------YVTEYSDASGTGWFDVAKRAWSKE------LLDALDLPESQLPELIE-SSE 209

Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMV 353
             G  + P  A  LGL  G PV     D  AG +G     P                 M 
Sbjct: 210 KAG-TVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAM-------------MS 255

Query: 354 LVCGTSTCHMAVSRNKLFIP--GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVAS 411
           L  GTS    AV+   L  P   V G F  A +P  WL  G   +  + L++  E     
Sbjct: 256 L--GTSGVVYAVTDKPLPDPAGAVHG-FCHA-LPGGWLPMGVTLSATSSLEWFRE----- 306

Query: 412 RSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 471
                        LF   +    + + E++ P    +T     LP  +G R+P  DP+++
Sbjct: 307 -------------LFGKEDVEALNELAEQSPPGAEGVT----FLPYLNGERTPHLDPQAR 349

Query: 472 GIICGMTLDSSEKQLALLYLATVQGIAYGTR---HIVEHCNAHGHKIDTLLACGGLAKNP 528
           G   G+T +++   L     A ++G+ +  R    I+      G  I ++   GG AK+P
Sbjct: 350 GSFIGLTHNTTRADLT---RAVLEGVTFALRDSLDILREAG--GIPIQSIRLIGGGAKSP 404

Query: 529 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 588
            + Q  ADI G P+ +P   E   LGAAIL A A           +A+    + + P   
Sbjct: 405 AWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--I 462

Query: 589 PK-VKKYHDAKYLIFRELFE 607
            + V+ Y +  Y  +++L++
Sbjct: 463 AENVEAYEEL-YERYKKLYQ 481

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases

 Score =  123 bits (312), Expect = 3e-30
 Identities = 130/516 (25%), Positives = 207/516 (40%), Gaps = 79/516 (15%)

Query: 57  FLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDC--IEQSSTDIWHAICAAVDSA 113
           +LGVD GT S +  + D E+G++L   S+P ++   G     EQ       A+  A   A
Sbjct: 2   YLGVDCGTQSTKVIVLDAETGEVLAEGSAPHEL-ISGSNGRREQQPQWWIDALVEAFRQA 60

Query: 114 CSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 172
            + A +D +EV+ +G +     LV +DA G  +         R   +W D     +  ++
Sbjct: 61  LADAGIDPKEVRAIGVSGQQHGLVPLDAQGEVL---------RPAKLWCDTETAPENAEL 111

Query: 173 NSR---NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 229
             +       ++  G A        KLLW+KE+  E+++ +   +   D+L++  TG   
Sbjct: 112 IEKLGGAKAWIERLGNAPLTGYTASKLLWLKEHEPENFAKIATILLPHDYLNFWLTGR-- 169

Query: 230 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289
               T        G A     +  G+ D+    W +E  + I          A    ++ 
Sbjct: 170 --YVTEY------GDA-----SGTGYFDVRTREWSEEVLDAIDP----ALDLADALPTLL 212

Query: 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 349
            P  P G+ + P AA+ LGL     V +   D   G +G     P  V+           
Sbjct: 213 SPDEPAGT-VRPEAAEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVT----------- 260

Query: 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 409
             M L  GTS    A S   +  P          V  F       S+TG  L  I   +V
Sbjct: 261 --MSL--GTSGTLYAYSDKPVVDP-------QGEVAGF------CSSTGGWLPLICTMNV 303

Query: 410 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 469
              +   R       L  L    L ++     +P  A   E + +LP F+G R+P   P 
Sbjct: 304 TVATEQVRN------LLGLDIEELNALA--AQAPPGA---EGLTLLPFFNGERTP-NLPN 351

Query: 470 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 529
           ++G + G+T  S+    A L  A V+G  +G R+ ++   A G K   +   GG AK+P 
Sbjct: 352 ARGSLHGLT--SANTTRANLARAAVEGATFGLRYGLDLLRALGLKSTEIRLIGGGAKSPA 409

Query: 530 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 565
           + Q  ADI+   +++P   E+  LGAAI  A     
Sbjct: 410 WRQIIADIMNAEVVVPDTEEAAALGAAIQAAWCLTG 445

This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  118 bits (298), Expect = 2e-28
 Identities = 81/298 (27%), Positives = 124/298 (41%), Gaps = 77/298 (25%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI------WKEGDCIEQSSTDIWHAICAA 109
            +LG+D+GT   +A L DE G+++ SAS+   +      W      EQ   D W A  AA
Sbjct: 1   YYLGIDLGTSGVKALLVDEDGEVVASASAEYPLSQPKPGWS-----EQDPEDWWEATKAA 55

Query: 110 VDSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
           +    + + + G EV+G+G +     LV +D DG  +         R  I+W D R   +
Sbjct: 56  IRELLAKSGIAGGEVRGIGLSGQMHGLVLLDKDGKVL---------RPAILWNDQRTTAE 106

Query: 169 AEKINSR-NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 227
            E+I  R    +++  G    P    PKLLW++E+  E+++ + + +   D+L YR TG+
Sbjct: 107 CEEITERVGGELIEITGNPALPGFTAPKLLWLREHEPENFAKIAKVLLPKDYLRYRLTGE 166

Query: 228 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM-EACG----------WDDEFWEEIGLG-- 274
               + T                      D+ +A G          W DE  + +G+   
Sbjct: 167 ----IAT----------------------DVSDASGTLLLDVAKRDWSDELLDALGIDRA 200

Query: 275 ---DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV 329
              +L +      G             LT  AA ELGL  GTPV     D  AG VG 
Sbjct: 201 ILPELYES-SEVTGT------------LTAEAAAELGLPAGTPVVAGGGDNAAGAVGN 245

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases

 Score =  116 bits (292), Expect = 7e-28
 Identities = 109/516 (21%), Positives = 190/516 (36%), Gaps = 98/516 (18%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           ++ G+DVGT + +  +FD+ G ++                     ++W AI   +    +
Sbjct: 1   LYCGIDVGTTNTKVVVFDDDGTIIAIRKFKTPKNVSDGGPYFDPDELWRAIEKVI--CQA 58

Query: 116 LANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
           LA    + +  +   +   S V VDADG P+            I W D R  ++AE++  
Sbjct: 59  LAAA-PDPIAAISITSVGESGVLVDADGEPLY---------PAIAWYDRRTEEEAEELRK 108

Query: 175 RNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSL 232
           ++  +  Y   G    P     K+LW++E+  E W   ++W+ + D++ +R TG      
Sbjct: 109 QDPGLAIYEITGLPPDPIYSLFKILWLREHRPEVWKRAYKWLHIPDYILFRLTG------ 162

Query: 233 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 292
                   +   A     +     D+ A  W +E  E  G+               A P 
Sbjct: 163 ---RPVTDF-TLA-----SRTLLFDIRAREWSEELLEMFGI------------PPDALPE 201

Query: 293 -HPLGS---GLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 348
             P G+    ++  AA+ LGL  GTPV     D   G        P  + ++        
Sbjct: 202 LVPSGTIIGEVSKDAAESLGLSTGTPVVLGGHDHPVGSYAAGVIDPGDILDS-------- 253

Query: 349 CHRMVLVCGTSTCHMAVSRNKL----FIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 404
                   GT+   +A++  KL       GV   F     P  +    G  + G  ++++
Sbjct: 254 -------MGTAEALLAIASAKLKETLTREGV--AFGVYAEPDRYYLIAGLPSGGFAIEWL 304

Query: 405 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 464
                                        E+            L       P   G+ SP
Sbjct: 305 RNIL-----------------------GGEASSKRAQEKL---LDSAALFYPYSRGSGSP 338

Query: 465 IADPKSKGIICGMTLDSSEKQLALLYLATV-QGIAYGTRHIVEHCNAHGHKIDTLLACGG 523
           I    + G   G+T  +S++ +      +V +G+ +  R  +E     G +   ++  GG
Sbjct: 339 IRSEIAGGAFYGLTDTTSQEDI----TRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394

Query: 524 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559
            ++N L+LQ  A ++G PI +  E E V LGAA+L 
Sbjct: 395 GSRNKLWLQLKASVLGKPIEVLDEAELVALGAALLA 430

This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430

>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases

 Score =  115 bits (290), Expect = 2e-27
 Identities = 134/571 (23%), Positives = 209/571 (36%), Gaps = 109/571 (19%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +DVGTGS RA L    G ++  A+    Q   +    EQ   D W   C  +     
Sbjct: 2   ILAIDVGTGSTRAALVRIDGAIVAFAAREHEQTVPQFGWSEQRPLDWWQGACDCIREV-- 59

Query: 116 LANVDGEEVKGVGFAATC----SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171
           LA V G   + +     C      V +D  G           R    +W D R   Q + 
Sbjct: 60  LARVPGAAER-IAVIGACGQMHGTVLLDDAGELT--------RDTAPLWNDKRTQPQVDA 110

Query: 172 INSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG--- 226
             +RN     L +     +P     KL W +EN  +++S + + +   D++++  TG   
Sbjct: 111 FEARNGWEKYLAHLANPPAPAWPAFKLAWWRENDPQAYSRLAKVLMPKDYINFMLTGAMA 170

Query: 227 -DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 285
            D T + C+ +                          W  +  E +GL          + 
Sbjct: 171 TDRTEASCSFLMDP-------------------ATRSWSSQACETMGL-------DVDLL 204

Query: 286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESVSEAKEN 343
             +  P   +G  +T  AA   GL  G PV  G S       G GV E  P   S++   
Sbjct: 205 PPLRLPLDIIGQ-VTQPAADLTGLPAGIPVLVGASDYAMALLGSGVCE--PGMGSDSTGT 261

Query: 344 EEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQS---ATGAL 400
               I   + LV      H  VS N     G WG F         L  GG +   A  AL
Sbjct: 262 --STI---VTLVADRPLLHPEVS-NLHTAEGAWGAF-------TLLDAGGDAVRWARRAL 308

Query: 401 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 460
            D    N ++   L   AA+                          A +E +  LP   G
Sbjct: 309 HD----NQLSYAQLVAEAAA------------------------APAGSEGLLFLPYLTG 340

Query: 461 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT-RHI--VEHCNAHGHKIDT 517
            R       S+    G+    ++     L+ A ++G+A+   RH+  ++ C     + + 
Sbjct: 341 ERLG-EHRNSRAQFFGLG---AKHGRGHLHRAVLEGVAFAVWRHLRQLQKC---QGRPER 393

Query: 518 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN 577
           ++A GG A+  L+L+  A + G PI++PRE E  ++G A + AVA  R+S   +A +   
Sbjct: 394 MIASGGGARTALWLKIKASVYGLPILVPREQECGVVGCAAMAAVATGRFSDFADAARQTV 453

Query: 578 AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608
                I P  DP  +  +     +F  L+  
Sbjct: 454 RFADEISP--DPAWRDVYHRMQPVFDRLYRH 482

This subgroup is composed of proteobacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 493

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  109 bits (276), Expect = 9e-26
 Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 44/265 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSL 116
           LGVD+GT S +A LFDE G+++   S    +    D   EQ   +I+ A+   +D    +
Sbjct: 3   LGVDIGTTSTKAVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV--V 60

Query: 117 ANVDGEEVKGVGF-AATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
           A   G  +  V F +A  SL+A+D DG P++          +I W D RA + AE++  R
Sbjct: 61  AKALGGRIAAVSFSSAMHSLIALDEDGEPLT---------PVITWADTRAAEYAEELKER 111

Query: 176 NSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DTR 230
                + Q  G  + P     KLLW+KE   E ++   +++ + +++ YR  G+   D  
Sbjct: 112 LDGRELYQRTGCPLHPMYPLAKLLWLKEERPELFAKAAKFVSIKEYVLYRLFGELVVDY- 170

Query: 231 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 290
           S+ +     T             G  ++    WD+E  E  G+         +    +  
Sbjct: 171 SIAS----GT-------------GLLNIHTLDWDEEALEIAGIS-------EEQLPELVP 206

Query: 291 PGHPLGSGLTPAAAKELGLVPGTPV 315
               L  GL    A +LGL   TP 
Sbjct: 207 TTEQLR-GLKAERAPKLGLPEDTPF 230

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score =  105 bits (265), Expect = 1e-25
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 36/277 (12%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSAC 114
             LG+D GT S +A +F++ GK++ SAS+P   I  +    EQ   +IW A+  A+    
Sbjct: 1   YVLGIDCGTTSTKAIVFNKQGKVVASASAPYALISPKPGWAEQDPEEIWQALAQAIRKIL 60

Query: 115 SLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
             + +  +++KG+G +     LV +D +  P+            I+W D R  +  E + 
Sbjct: 61  QQSGISPKQIKGIGISGQGHGLVLLDKNDKPL---------YPAILWNDTRTAEIVENLK 111

Query: 174 SRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 231
                  + +  G  + P     KL W+KE+  E +    +++ + D+L +R TG     
Sbjct: 112 EEGGADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERARKFLLIHDYLRWRLTG----Q 167

Query: 232 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291
             T                +     +++   WD+E    +G+          +  S    
Sbjct: 168 FTT-----------DYSDASGTMMFNIKTLEWDEELLAILGI-PPD--LLPPLVESSEIY 213

Query: 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 328
           G      L P  A   GL  G PV     D  A  +G
Sbjct: 214 GT-----LNPEHAALFGLDEGIPVVGGGGDNQAAALG 245

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  101 bits (254), Expect = 9e-23
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 460 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLL 519
           G R+P  DP ++G   G+TL  +   L     A ++G+A+  R  +E     G  ID ++
Sbjct: 340 GERTPHNDPNARGAFIGLTLSHTRAHLTR---AVLEGVAFSLRDSLEILRELGVPIDRII 396

Query: 520 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 579
           A GG A++PL+LQ  AD++G P+   +  E   LGAAIL AV A  Y S+ EA  A+   
Sbjct: 397 AIGGGARSPLWLQIQADVLGLPVDTLKGEEGPALGAAILAAVGAGWYPSVEEAALAVPKV 456

Query: 580 GQVIHPSKDPKVKKYHDAKYLIFRELF 606
            + I P  D +    ++ +Y I+REL+
Sbjct: 457 EETIEP--DAENVAAYEERYEIYRELY 481

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 91.5 bits (228), Expect = 2e-19
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++ +P F G  +P  DP ++G I G+T  ++   +     A ++ IA+ TR +++  
Sbjct: 336 TGGVYFVPAFSGLFAPYWDPDARGTILGLTRGTTRAHIVR---AALEAIAFQTRDVLDAM 392

Query: 509 N-AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G K+  L   GGL KN L +Q  ADI+G P+  P   E+  LGAA L  +A   +S
Sbjct: 393 EKDSGIKLSVLRVDGGLTKNNLLMQFQADILGVPVERPETAETTALGAAYLAGLAVGFWS 452

Query: 568 SLIEAMKAMNAAGQVIHPSKDPKVKKYH 595
            L E ++A+  + +V  P+ D   ++  
Sbjct: 453 DLDE-LQALRKSDRVFSPTMDASEREKR 479

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 114/512 (22%), Positives = 208/512 (40%), Gaps = 72/512 (14%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACSL 116
           +GVD+GT S +A LF+E+GK++  +S    ++       E++  +I+ A+   +    S+
Sbjct: 3   IGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTI-REVSI 61

Query: 117 ANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 175
              D +E+  V F+    SL+A D +  P++          +I W D+RAVK AE+I   
Sbjct: 62  NLEDEDEILFVSFSTQMHSLIAFDENWQPLT---------RLITWADNRAVKYAEQIKES 112

Query: 176 NS--PVLQYCGGAVSPEMQP-PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSL 232
            +   + +  G  + P M P  K++W++    + +    +++++  ++  R  G      
Sbjct: 113 KNGFDIYRRTGTPIHP-MAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYKIDY 171

Query: 233 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 292
            T                +  G  ++    WD E  E  G+    +    K+      P 
Sbjct: 172 STA---------------SATGMFNLFELDWDKEALELTGIK---ESQLPKL-----VPT 208

Query: 293 HPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRM 352
             +   L    AK++G+   TP      D     +GV          A +  E A+    
Sbjct: 209 TEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGV---------NAIKKGEAAV---- 255

Query: 353 VLVCGTS-TCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVAS 411
               GTS      + + K    G    F  A+  + W+  G  +  G +L +  +    S
Sbjct: 256 --TIGTSGAIRTVIDKPKTDEKG--RIFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS 311

Query: 412 RSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 471
                 A    +  +++L     + I  R SP    L    H  P   G R+P+ +  ++
Sbjct: 312 E--IETATRLGIDPYDVL-----TEIAARVSPGADGLL--FH--PYLAGERAPLWNANAR 360

Query: 472 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHI-VEHCNAHGHKIDTLLACGGLAKNPLF 530
           G   G+T    ++ +     A ++G+ Y    + +      G  ++ + A GG A + ++
Sbjct: 361 GSFFGLTYSHKKEHMI---RAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW 417

Query: 531 LQQHADIIGCPIILPRENESVLLGAAILGAVA 562
            Q  +DI    I++P   ES  LGA ILG  A
Sbjct: 418 RQMMSDIFEQEIVVPESYESSCLGACILGLKA 449

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score = 86.9 bits (216), Expect = 5e-18
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 506
              ++ +P F G  +P  DP ++G I G+T  +++  +A    A ++ IA+ TR ++E  
Sbjct: 336 NGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIAR---AALEAIAFQTRDVLEAM 392

Query: 507 HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY 566
             +A G +I  L   GG+  N L +Q  ADI+G P++ P+  E+  LGAA    +A   +
Sbjct: 393 EKDA-GVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYW 451

Query: 567 SSLIEAMKAMNAAGQVIHPSKDPKVKK 593
            SL E ++A+    +   P  D + ++
Sbjct: 452 KSLEE-IEALWRVEKTFEPEMDEEERE 477

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  +  +P F G  +P   P ++G I GMTL ++   +     A ++ IA  T  ++E  
Sbjct: 343 TGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVR---AALEAIALQTNDVIESM 399

Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G ++++L   GGL KN L +Q  ADI+G  I++P   E+  LGAA+L  +A   + 
Sbjct: 400 EKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWK 459

Query: 568 SLIEAMKAMNAAGQVIHPSKDPKVKK 593
           SL E  K +  +     P    + +K
Sbjct: 460 SLEEVKKLIRRSNSTFSPQMSAEERK 485

Length = 504

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 127/542 (23%), Positives = 209/542 (38%), Gaps = 83/542 (15%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSP-IQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  +FD  G+++  A     QI+     +E    +IW      +  A + A 
Sbjct: 5   IDQGTTSTRCIVFDHHGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGALAKAG 64

Query: 119 VDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI--NS 174
           +  E++  VG         V   A G PV          N IVW D R  +   ++  + 
Sbjct: 65  LTPEDIAAVGITNQRETTVVWDRATGRPVY---------NAIVWQDTRTDEICRELAADE 115

Query: 175 RNSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATGDD 228
                    G  ++     PK+ W+ +N+       E   ++F  MD   WL +  TG  
Sbjct: 116 GQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMD--TWLLWNLTGGP 173

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
              +  T    T      +         D+E   WD E     G+   +     +I  S 
Sbjct: 174 RGGVHVTDV--TNASRTMLM--------DLETLDWDPELLAAFGIPRSM---LPEIRPSS 220

Query: 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 348
              G            +  G++ G P+   L D  A   G          EAK N     
Sbjct: 221 EVYGT----------VRGRGILAGVPIAGVLGDQQAALFG---QTCFEAGEAK-NTYGTG 266

Query: 349 CHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 408
           C  ++L  GT       S++ L +  V   F     P  +  EG  + TG+L+ ++ +N 
Sbjct: 267 CF-LLLNTGTE---PVRSKHGL-LTTVAYQFGGQ--PAVYALEGSIAVTGSLVQWLRDN- 318

Query: 409 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 468
                L   AA       E L  T+E                 ++ +P F G  +P    
Sbjct: 319 ---LGLIKTAAE-----IETLARTVED-------------NGGVYFVPAFSGLFAPYWRS 357

Query: 469 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKN 527
            ++G+I G+T   ++  +A    A ++  A+ TR +V+  NA  G  +++L   GG+  N
Sbjct: 358 DARGVIVGLTRYVNKGHIAR---AVLEATAFQTREVVDAMNADSGVALESLRVDGGMVAN 414

Query: 528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSK 587
            L +Q  ADI+G P++ P+  E+  LGAA    +A   +    E +++  +  +   PS 
Sbjct: 415 ELLMQFQADILGVPVVRPKVAETTALGAAYAAGLAVGFWKDTDE-LRSNWSEDKTWTPSM 473

Query: 588 DP 589
           DP
Sbjct: 474 DP 475

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 81.0 bits (201), Expect = 4e-16
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
              ++ +P F G  +P  DP ++G I G+T  ++   +A    A ++ IAY TR ++E  
Sbjct: 334 NGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTRAHIAR---AALESIAYQTRDLLEAM 390

Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
            A  G  +  L   GG + N   +Q  ADI+G P+  P+  E+  LGAA L  +A   + 
Sbjct: 391 EADSGIPLKELRVDGGASANDFLMQFQADILGVPVERPKVTETTALGAAYLAGLAVGLWK 450

Query: 568 SLIEAMKAMNAAGQVIHPSKDPKVKKYH 595
           SL + +  +    +   PS   + ++  
Sbjct: 451 SL-DELAKLWQVDRRFEPSMSEEEREAL 477

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 71/277 (25%), Positives = 104/277 (37%), Gaps = 61/277 (22%)

Query: 57  FLGVDVGTGSARAGLFD-ESGKLLGSASSPIQ----IWKEGDCIEQSSTDIWHAICAAVD 111
           FLG D+G+ S +A L D E+GK L S S P Q    +  +    EQ     W   CAA  
Sbjct: 2   FLGYDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQPGWAEQDPEIWWDYTCAATK 61

Query: 112 SACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
              +    D   ++ +G +     LV VD  G+ +         R  I+W D RAV   E
Sbjct: 62  QLINQGKEDLSNIQAIGISYQMHGLVLVDKQGNVL---------RPAIIWCDSRAVSIGE 112

Query: 171 KINSRNSPVLQYCGGAVSPEMQPP------KLLWVKENLQESWSMVFRWMDLSDWLSYRA 224
           K  +       +C   +S  +  P      KL WVKEN  E +  + + M   D+++ + 
Sbjct: 113 K--AFQELGEDFC---LSHLLNSPGNFTASKLAWVKENEPEVFDRIAKIMLPGDYIAMKL 167

Query: 225 TGDDTRSLCTTVCK------WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLID 278
           TG+    + TT         W +       + NE     +E  G D     +I       
Sbjct: 168 TGE----VTTTKSGLSEGMLWDF-------KKNEVAVELLEYLGLDRSLIPDI---VPNF 213

Query: 279 GHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 315
                +               T   A ELGL  G P+
Sbjct: 214 SEQGTV---------------TSEIAAELGLSEGIPI 235

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
              ++ +P F G  +P  D  ++G I G+T  +++  +A    AT++ IAY TR ++E  
Sbjct: 339 NGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAM 395

Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G K+  L   GG ++N   +Q  ADI+G P+  P   E+  LGAA L  +A   + 
Sbjct: 396 EKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWK 455

Query: 568 SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 604
            L E  +      +   P  D + ++     Y  +++
Sbjct: 456 DLDELAELWP-LDKEFEPGMDEEERE---ELYAGWKK 488

Length = 499

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 58/275 (21%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI-----WHAICAAVD 111
            L  D GTGS RA +FD +G  +  +    +     +     S D      W  +C  + 
Sbjct: 2   LLAFDAGTGSVRAVIFDLTGNQIAVSQE--EWEHLAEPRYPGSMDFDPQVNWKLVCRCIR 59

Query: 112 SACSLANVDGEEVKGVGFAATC---SLVAVDADGSPVSVSWNGDSR-----RNIIVWMDH 163
            A + + +   ++  V  +AT     +V  D +G+ +    N D+R     R +  W   
Sbjct: 60  QALARSGIAPIDIAAV--SATSMREGIVLYDQNGNEIWACANVDARAAEEVRELKEWEPD 117

Query: 164 RAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 223
              +      S  +  L    GA+      P+LLW+K++  + +        +SDW+ Y+
Sbjct: 118 LEKEIYRS--SGQTFAL----GAL------PRLLWLKQHRPDIYEKTASVTMISDWILYK 165

Query: 224 ATGD---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280
            +G    +  +  TT                  G  D++   W  E  + +GL D     
Sbjct: 166 LSGVLAVEPSNAGTT------------------GLFDLKTRDWSPEMLDIVGLRD----- 202

Query: 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 315
              I   V   G  +G+ +T  AA E GL  GTPV
Sbjct: 203 --DIFPPVVETGTVIGT-VTNEAASETGLAAGTPV 234

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 68.1 bits (167), Expect = 6e-12
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           + D++ +P F G  +P     ++GIICG+T  +++  +A    A ++ + + TR I+E  
Sbjct: 346 SGDVYFVPAFSGLYAPYWRKDARGIICGLTQFTTKNHIAR---AALEAVCFQTREILEAM 402

Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR-- 565
           N   G  +  L   GG+  N L +Q  ADI+G P++ P   E+  LGAA+  A AAK   
Sbjct: 403 NKDCGIPLSKLQVDGGMTSNNLLMQLQADILGIPVVRPSMPETTALGAAM-AAGAAKGVE 461

Query: 566 -YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKY 599
            +S   E + A+    +   PS   + +    AK+
Sbjct: 462 VWSLEPEDLSAVTF--ETFLPSITEEERNIRYAKW 494

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 126/566 (22%), Positives = 213/566 (37%), Gaps = 97/566 (17%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGS------ASSPIQIWKEGDCIEQSSTDIWHAICAA 109
           +++G+D+GT   +  L +E G+++ S       S P  +W E     Q     W A   A
Sbjct: 1   MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSE-----QDPEQWWQATDRA 55

Query: 110 VDSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
           + +     ++  ++VK +G A        +DA    +         R  I+W D R  ++
Sbjct: 56  MKALGDQHSL--QDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQE 104

Query: 169 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD 228
              + +R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+ 
Sbjct: 105 CALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEF 164

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
                           + M       + D+    W D   +      L       +    
Sbjct: 165 A---------------SDMSDAAGTMWLDVAKRDWSDVMLQAC---HLSRDQMPAL---- 202

Query: 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 348
            + G  +   L P  AK  G+    PV     D  AG VGV       + +A +      
Sbjct: 203 -YEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGV------GMVDANQ------ 248

Query: 349 CHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 408
               +L  GTS  + AVS   L  P      +   +P+ W       +  + LD+     
Sbjct: 249 ---AMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDW----- 300

Query: 409 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 468
             +  L   +     ++  L+    ++              E +  LP   G R+P  +P
Sbjct: 301 --AAKLTGLS-----NVPALIAAAQQADES----------AEPVWFLPYLSGERTPHNNP 343

Query: 469 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP 528
           ++KG+  G+T      +LA    A ++G+ Y     ++  +A G K  ++   GG A++ 
Sbjct: 344 QAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSE 400

Query: 529 LFLQQHADIIGCPIILPRENESV--LLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPS 586
            + Q  ADI G  +   R    V   LGAA L  +AA    SLIE +  +      +  S
Sbjct: 401 YWRQMLADISGQQLDY-RTGGDVGPALGAARLAQIAANPEKSLIELLPQLP-----LEQS 454

Query: 587 KDPKVKKYHDAKYLIFRELFEQQVSQ 612
             P  ++Y  A Y   RE F +   Q
Sbjct: 455 HLPDAQRY--AAYQPRRETFRRLYQQ 478

Length = 484

>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 74/304 (24%), Positives = 111/304 (36%), Gaps = 74/304 (24%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----------EGDCIEQSSTD 101
           S S  + +D GTGS RA +FD +G  +         W+           E D  +     
Sbjct: 1   SMSYLMALDAGTGSIRAVIFDLNGNQIAVGQ---AEWRHLAVPDVPGSMEFDLEKN---- 53

Query: 102 IWHAICAAVDSACSLANVDGEEVKGVGFAATCSL----VAVDADGSPVSVSWNGDSRRNI 157
            W   C  +  A   A +   ++  V   +  S+    V  D +G+ +    N D+R + 
Sbjct: 54  -WQLACQCIRQALQKAGIPASDIAAV---SATSMREGIVLYDRNGTEIWACANVDARASR 109

Query: 158 IVWMDHRAVKQAEKINSRNSPVLQYCG-----GAVSPEMQPPKLLWVKENLQESWSMVFR 212
            V      +K  E  N+    V +  G     GA+      P+LLW+  +  + +     
Sbjct: 110 EV----SELK--ELHNNFEEEVYRCSGQTLALGAL------PRLLWLAHHRPDIYRQAHT 157

Query: 213 WMDLSDWLSYRATGD---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWE 269
              +SDW++Y  +G+   D  +  TT                  G  D+    WD    E
Sbjct: 158 ITMISDWIAYMLSGELAVDPSNAGTT------------------GLLDLVTRDWDPALLE 199

Query: 270 EIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GV 327
             GL          I   V   G  LG  +T  AA E GL  GTPV     D   G  G+
Sbjct: 200 MAGLRA-------DILPPVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL 251

Query: 328 GVME 331
           GV+ 
Sbjct: 252 GVVR 255

Length = 520

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S R  +FD  G+++ S      QI+ +   +E    +IW  +   ++ A   
Sbjct: 3   LAIDQGTTSTRFIIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEALKK 62

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAE 170
             +  E++K +G      T              V+W+ ++ +   N IVW D R  +  E
Sbjct: 63  LRISPEQIKAIGITNQRETT-------------VAWDKETGKPLYNAIVWQDTRTSEIVE 109

Query: 171 KINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQE 205
           ++ +  +     +  G  +SP     KL W+ EN+ E
Sbjct: 110 ELKADGNADYFREKTGLPISPYFSALKLRWLLENVPE 146

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score = 65.0 bits (159), Expect = 5e-11
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 26/182 (14%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD+ G ++        QI+ +   +E    +IW ++ + +  A + 
Sbjct: 4   LAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK 63

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 172
           A +  +++  +G      T   V  D   G P+          N IVW D R     E++
Sbjct: 64  AGIKPDDIAAIGITNQRETT--VVWDKATGKPL---------YNAIVWQDRRTASICEEL 112

Query: 173 NSR--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRA 224
            +      + +  G  + P     KL W+ +N+       E   ++F  +D   WL +  
Sbjct: 113 KAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTID--TWLIWNL 170

Query: 225 TG 226
           TG
Sbjct: 171 TG 172

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score = 64.8 bits (159), Expect = 5e-11
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
            + ++V+P F G  +P  D  ++G I G+T  ++++ +     AT++ IAY TR +++  
Sbjct: 340 NDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIR---ATLESIAYQTRDVLDAM 396

Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
            A  G ++  L   GG   N   +Q  ADI+G P+  P   E+  LGAA L  +A   + 
Sbjct: 397 QADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWK 456

Query: 568 SLIEAMKAMNAAGQVIHPSKDPKVKK 593
            L E +K      +   P  D + ++
Sbjct: 457 DLDE-LKEQWKIDRRFEPQMDEEERE 481

Length = 498

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 456 PDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 514
             F G  +P  D  ++G I G+T  +++  +A    A ++ + + TR I++  +   G  
Sbjct: 353 TAFSGLFAPYWDDDARGTIFGITQYTTKSHIAR---AALEAVCFQTRAILDAMSKDSGSP 409

Query: 515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMK 574
           +  L   GG++ + + +Q  ADI+G P+  P   ES  LGAAI    A   +   +    
Sbjct: 410 LKALAVDGGMSNSDVAMQIQADILGIPVERPEMRESTALGAAIAAGFAVGLFGWDLTLKD 469

Query: 575 AMNAAGQVIHPSKDPKVKKYH 595
                  V  P  D + +   
Sbjct: 470 INTEGNTVFKPKTDDEERAKM 490

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score = 64.6 bits (158), Expect = 8e-11
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSA 113
              L +D GT S+RA +FDE G ++  A     QI+ +   +E    +IW ++ + +  A
Sbjct: 5   KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEA 64

Query: 114 CSLANVDGEEVKGVGFA---ATCSLVAVD-ADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
            + A +   E+  +G      T   V  D   G P+          N IVW D R     
Sbjct: 65  LAKAGIKPGEIAAIGITNQRETT--VVWDKETGKPIY---------NAIVWQDRRTADIC 113

Query: 170 EKINSR 175
           E++ + 
Sbjct: 114 EELKAD 119

Length = 499

>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 435 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATV 494
           +MI E  +  +    + + +  D    +             G+TL+++       Y A +
Sbjct: 322 TMIEEARA--IPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAAL 368

Query: 495 QGIAYGTRHIVEHCNAHGH-KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 553
           +G+    +  ++     GH K   LL  GG ++N L+ Q  A+++  PI +  + E+ + 
Sbjct: 369 EGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVA 428

Query: 554 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP 589
           GAA+ G      +SS  +A   M    +  +P  +P
Sbjct: 429 GAAMFGWYGVGEFSSPEQARAQMKYQYRYFYPQTEP 464

Length = 470

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQL--ALLYLATVQGIAYGTRHIVE 506
           +E ++ +P F G + PI DP++     G+   ++++ L  ALL     + IA+  + + E
Sbjct: 349 SEGVYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALL-----ESIAFRIKQLYE 403

Query: 507 HCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 565
                 G  I  +   GG++ N    Q  AD+ G P+      E   LGAA L  +A   
Sbjct: 404 TIKKETGQPIKKIRVDGGVSNNDFICQLLADLTGLPVERADSTEMSALGAAYLAGLAVGL 463

Query: 566 YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK 598
           + +  E  K +    ++  P  + + K     K
Sbjct: 464 WKNKEELKK-LRKVEKIFEPKPNIRKKYLPIMK 495

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIV 505
           A+    ++ +P   G  +P  D  ++G+I G+TL +    LA    A ++ IA+    + 
Sbjct: 328 ASDNGGVYFVPALTGLGAPWWDRDARGLISGLTLGTGRAHLAR---AALESIAFQIADVF 384

Query: 506 EHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563
           E      G  ++ L   GG  +N   +Q  AD++G P+I     E   LGAA+L   A 
Sbjct: 385 EAMQQAAGGPLERLSVDGGATRNRFLMQLQADLLGRPVIRSDTPEVSALGAALLAGKAL 443

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 42/198 (21%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +DVGT + R  ++D   +++GS+   I+ ++ E   +E     +W  I   +  A   
Sbjct: 3   LALDVGTTTIRCFIYDRQAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEAVKD 62

Query: 117 ANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAEKI 172
           AN+  +++ G+G +    S            ++WN  + +   N I W D RA +  ++ 
Sbjct: 63  ANLTAKQIAGLGISTQRGSF-----------LTWNKSTGKPYHNFITWKDLRADELVKEW 111

Query: 173 NSR--------NSPVL-------QYCGGAV---SPEMQPPKLLWVKEN------LQESWS 208
           N+          S VL       ++   +V     +    +LLWV +N        +  +
Sbjct: 112 NNSLLMKAIRVASKVLHLLTRSKRFLAASVLKFMNQHVTLRLLWVLQNNPELKKALKEGN 171

Query: 209 MVFRWMDLSDWLSYRATG 226
           ++F  +D   WL Y+ TG
Sbjct: 172 VLFGTID--TWLLYKLTG 187

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 67/280 (23%), Positives = 102/280 (36%), Gaps = 64/280 (22%)

Query: 54  RSVFLGVDVGTGSARAGLFDESGKLLGSASSP--IQIWKEGDCIEQSSTD-IWH--AICA 108
           + V L +D G  + RA   D  GK++  AS+P    I  E     Q S D I    A C 
Sbjct: 1   QDVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCC 60

Query: 109 AVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
                   + +    ++G+      ++     DG+ V     G+    II W   R    
Sbjct: 61  RQ----INSELTECHIRGI------TVTTFGVDGALVDK--QGNLLYPIISWKCPRTAAV 108

Query: 169 AEKINS--------RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 220
            E I          + S V  +    +       KL+W+KEN  +       W+ +S  +
Sbjct: 109 MENIERYISAQQLQQISGVGAFSFNTLY------KLVWLKENHPQLLEQAHAWLFISSLI 162

Query: 221 SYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280
           ++R TG+ T          T +  A   QM      D++   +  E  +  GL       
Sbjct: 163 NHRLTGEFT----------TDITMAGTSQML-----DIQQRDFSPEILQATGL------- 200

Query: 281 HAKIGRSVAFP-----GHPLGSGLTPAAAKELGLVPGTPV 315
                    FP     G  +G+ L P+AA  LGL  G PV
Sbjct: 201 -----SRRLFPRLVEAGEQIGT-LQPSAAALLGLPVGIPV 234

Length = 470

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 45/276 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD-CIEQSSTDIWHAICAAVDSACSL 116
           L +D GT +A+A L D  G ++ S S+P+ I       +EQ +  IW A+  A+ + C L
Sbjct: 3   LAIDEGTTNAKAVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQQAI-ADC-L 60

Query: 117 ANVDGEEVKGVGFAATC-SLVAVDAD-GSPVS--VSWNGDSRRNIIVWMDHRAVKQAEKI 172
           A V   EV  +  +    S+V  D   G+P+   +SW    RR        RA      +
Sbjct: 61  AGVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQ--CRRTAAACAALRAEGHEPMV 118

Query: 173 NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV----FRWMDLSDWLSYRATGDD 228
            +R        G  + P     K+ W+ + + +  +           +  WL +  TG  
Sbjct: 119 AART-------GLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGGA 171

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
             +        T   +A   Q+      D+    WD +      L DL       I R+ 
Sbjct: 172 VFA--------TDASNAARTQL-----LDLHGGQWDPQ------LLDLFG-----IPRA- 206

Query: 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHA 324
           A P     +G         GL  G P+   + D+HA
Sbjct: 207 ALPDVLASAGDFGHTRGLGGLPDGVPILAMIGDSHA 242

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 456 PDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHK 514
           P F G  +P     +K  I GMT  + + +L     A ++ IAY    +++      G +
Sbjct: 342 PAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVR---AALESIAYQINDVIDAMEEDSGIE 398

Query: 515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMK 574
           I  L   GG  +N   +Q  ADI+  P+ +    E   LGAA    +A   Y+      K
Sbjct: 399 ISELRVDGGPTRNRYLMQFQADILNAPVKVSNIEELSALGAAYAAGLALGLYNQEFLEAK 458

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 51.7 bits (125), Expect = 6e-07
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LFD  G ++  A     QI+ +   +E    +IW +  A    A + 
Sbjct: 3   LAIDQGTTSSRAILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREALAK 62

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHR 164
           A +   ++  +G      T   V  D + G PV          N IVW D R
Sbjct: 63  AGIRASDIAAIGITNQRETT--VVWDRETGKPVY---------NAIVWQDRR 103

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 44/183 (24%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +D  T   +A LFDE G+LL  A     QI+ E   +E    +I+     AV     
Sbjct: 2   ILAIDQSTQGTKALLFDEKGELLARADKSHRQIYPENGWVEHDPEEIYENTLQAVKDLLE 61

Query: 116 LANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI- 172
              +D  E++G+G               G P+          N IVW   R     E++ 
Sbjct: 62  EFGIDPAEIEGLGITNQRETTVAWDKRTGKPLY---------NAIVWQCQRGKAICERLK 112

Query: 173 -NSRNSPVLQYCGGAVSPEMQPPKLLWVKEN------LQESWSMVFRWMDLSDWLSYRAT 225
                  + Q  G  + P     K+ W+ EN            + F  +D   WL Y+ T
Sbjct: 113 EEGYAELIKQKTGLKIDPYFSASKMAWLLENVEGVREAASKGDLAFGTID--SWLIYKLT 170

Query: 226 GDD 228
              
Sbjct: 171 NGK 173

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 9/151 (5%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 506
           T  ++ +P F G  +P     ++G+  G+T  +++  +A    A ++ + +  + +++  
Sbjct: 344 TGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIAR---AVLESMCFQVKDVLDAM 400

Query: 507 ----HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVA 562
                       +  L   GG   N L +Q  AD++G P++ P + E+  LGAA    +A
Sbjct: 401 RKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLA 460

Query: 563 AKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 593
              ++                 P  D + + 
Sbjct: 461 VGLWTEEEIFASEKWKNTTTFRPKLDEEERA 491

Length = 512

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 426 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQ 485
           FE L          R   FV AL+          G   P  D  + G+  GM+L ++ + 
Sbjct: 306 FEELAAFPAPPAIARGLAFVPALS----------GLACPHWDRSAAGLWLGMSLATTRQD 355

Query: 486 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP 545
           +     A ++G+A  +  ++   +      D L   GGL +NP F Q  AD++   I+ P
Sbjct: 356 MCQ---ALLEGVAMRSAEVIYAMDGVRPVGDRLSIDGGLTRNPYFCQFLADVLQREIVTP 412

Query: 546 RENESVLLGAAILGAVAA 563
             +E   LG A L A   
Sbjct: 413 SFDELTALGCAALAARGL 430

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 504 IVEHCNAH------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAI 557
           IV  CN        G    +L+  GG +K  L+ Q  AD+ G P+ +P   E+  LG AI
Sbjct: 393 IVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAI 452

Query: 558 LGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK 598
              V A  YSSL E  + +    +   P+ +   + Y +AK
Sbjct: 453 AAGVGAGIYSSLAETGERLVRWERTFEPNPENH-ELYQEAK 492

Length = 520

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 24/182 (13%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  ++D + K++ S      QI+ +   +E    +I   +   ++ A + A 
Sbjct: 5   IDQGTTSTRFIIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGALAKAK 64

Query: 119 VDGEEVKGVGFAATCSLVAVD-ADGSPVSVSWN---GDSRRNIIVWMDHRA---VKQAEK 171
             G +V          L A+   +    +V W+   G    N IVWMD R     ++ EK
Sbjct: 65  AKGLDVLD-------GLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLEK 117

Query: 172 -INSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRA 224
            +       ++ CG  +S      KLLW+ E++       +S   +F  +D   WL +  
Sbjct: 118 ELPEGGRHFVETCGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTID--TWLIWNL 175

Query: 225 TG 226
           TG
Sbjct: 176 TG 177

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 30/185 (16%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  ++D   + + S      QI+ +   +E    +I  ++   +  A   A 
Sbjct: 5   IDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64

Query: 119 VDGEEVKGVGFAATCSLVAVDADGSP----VSVSWNGDSRR---NIIVWMDHRAVKQAEK 171
             G  V             + A G       +V+W+  + R   N IVWMD R      +
Sbjct: 65  AKGHNVDS----------GLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRR 114

Query: 172 INSR----NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLS 221
           +           ++ CG  +S      KLLW+ EN+       +S   +F  +D   WL 
Sbjct: 115 LEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTID--SWLI 172

Query: 222 YRATG 226
           +  TG
Sbjct: 173 WNLTG 177

Length = 512

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 64/271 (23%), Positives = 104/271 (38%), Gaps = 48/271 (17%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAVDS 112
            V L +D G  + RA   +  GK++ SAS+P    K+   IE +   IW   AI   +  
Sbjct: 1   EVILVLDCGATNLRAIAINRQGKIVASASTPNAT-KQA--IENNDYHIWDLEAIWQKLAD 57

Query: 113 ACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 172
            C   N +  E    G A T   V    DG+P      G+    II W   R     + I
Sbjct: 58  CCQQINSELTEKHIRGIAVTTFGV----DGAPFDK--QGNQLYPIISWKCPRTAPVMDNI 111

Query: 173 NS--------RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 224
                       + +  Y    +       KL+W+KE+  + +  + +++ +S  +++R 
Sbjct: 112 ERLLDAQRLYAINGIGAYSFNTLY------KLVWLKEHHPQLFERMHKFVFISSMITHRL 165

Query: 225 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 284
           TG+ T          T  G + M         D+    W  +  + +GL         ++
Sbjct: 166 TGEFTTD-------ITMAGTSMMT--------DLTQRNWSPQILQALGLSR-------RL 203

Query: 285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 315
              +   G  +G+    AAA  LGL  G PV
Sbjct: 204 FPPLVEAGEQIGTLQNSAAAM-LGLPVGVPV 233

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 54  RSVFLGVDVGTGSARAGLFDESGKLLGSASS------PIQIWKEGDCIEQSSTDIWHAIC 107
                 +D GT S R  +FDE G ++ S         P   W E D  E     I   + 
Sbjct: 1   MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEE-----ILRNVY 55

Query: 108 AAVDSACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHR 164
             ++ A       G   K      T     V        V+W+  + +   N IVW+D R
Sbjct: 56  KCMNEAIKKLREKGPSFKIKAIGITNQRETV--------VAWDKVTGKPLYNAIVWLDTR 107

Query: 165 A---VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQE------SWSMVFRWMD 215
               V +  K    ++   +  G  +S      K+ W+ EN+          +++F  +D
Sbjct: 108 TYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTID 167

Query: 216 LSDWLSYRATG 226
              WL +  TG
Sbjct: 168 --TWLIWNLTG 176

Length = 504

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 60  VDVGTGSARAGLFD-ESGKLLGSASSPI-QIW-KEGDCIEQSSTDIWHAICAAVDSACS- 115
           +D GT S R  +F+ ++ +LL S    I QI+ KEG   EQ   +I +++   ++  C  
Sbjct: 6   IDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWV-EQDPKEILNSVYECIEKTCKK 64

Query: 116 --LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWN---GDSRRNIIVWMDHRAVKQAE 170
               N+D  ++K +G            +    +V W+   G+   N IVW+D R     +
Sbjct: 65  LKELNIDVSDIKAIGIT----------NQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVD 114

Query: 171 KINSRNSP-----VLQYCGGAVSPEMQPPKLLWVKENLQE 205
           K+ ++        +   CG  +S      KL W+ +N+ E
Sbjct: 115 KLLAKIPDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPE 154

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 66/277 (23%), Positives = 106/277 (38%), Gaps = 62/277 (22%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAVDSA 113
           V L +D G  + RA   +E G+++ SAS P    K+G  IE +   IW    I   +   
Sbjct: 1   VVLVLDCGATNVRAIAVNEQGQIVASASLPNAT-KQG--IENNDYHIWDFDEIWQKLVEC 57

Query: 114 CS--LANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAV---KQ 168
            +  L+ ++ +++  +      ++     DG+PV     G+    II W   R     K 
Sbjct: 58  ATQVLSQLNAKQIVAI------TVTTFGVDGAPVDK--QGNQLYPIISWKCPRTAPVMKN 109

Query: 169 AEKINS-----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 223
            E         + + V  Y    +       KL+W+KEN  +    + +++ +S  L++R
Sbjct: 110 IENEIDRLSLYQINGVGAYSFNTLY------KLVWLKENHPQLLEKMHKFVFISSMLTHR 163

Query: 224 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283
            TG+ T          T    A    M      D+ +  W       +GL          
Sbjct: 164 LTGEFT----------TDRTMAGTSMMT-----DLTSGNWSPSILAYLGLS---REL--- 202

Query: 284 IGRSVAFP-----GHPLGSGLTPAAAKELGLVPGTPV 315
                 FP     G  +G  LT  AA+ LGL  G PV
Sbjct: 203 ------FPPLVDAGEKIGL-LTTEAAQLLGLPAGIPV 232

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 461 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH-KIDTLL 519
           N         +G I G+TL+++   +   Y A ++G+    +  ++     G  K   LL
Sbjct: 342 NFQCDLLSCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELL 398

Query: 520 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 579
             GG +KN L+ Q  A+++  P+ +  + E+ + GAA+ G      Y+S  EA   M+  
Sbjct: 399 LVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQ 458

Query: 580 GQVIHPS 586
            +  +P 
Sbjct: 459 YRYFYPQ 465

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 509 NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 558
           +  G + D L+  GG +K+ L+ Q  AD+ G P+++P   E+  LGAAI 
Sbjct: 401 DFTGFEPDYLVFAGGASKSKLWSQILADVTGKPVVVPVVKEATALGAAIA 450

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++ +P F+G  +P     ++G+  G+T  +++  +A    A ++ + +  + ++   
Sbjct: 346 TGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHIAR---AVLESMCFQVKEVLTSM 402

Query: 509 NAHGHKIDT--------LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560
            A    I+         L   GG   N L +Q  AD++G P++ P + E+  LGAA    
Sbjct: 403 KADAGNIEANTVGGEFLLRVDGGATVNNLLMQIQADLMGSPVVRPVDIETTALGAAYAAG 462

Query: 561 VA 562
           +A
Sbjct: 463 LA 464

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 63/336 (18%), Positives = 113/336 (33%), Gaps = 57/336 (16%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG---DCIEQSSTDIWHAICAAVDSA 113
           +L  D+GTG+AR  +    G + G     I+ + +    D    S  ++W  +       
Sbjct: 2   YLVFDIGTGNARVAVVSADGTVWGIEREDIEYYTDKLYPDARYFSPEELWKQLLGGAKEL 61

Query: 114 CSLANVDGEEVKGVGFAATC---SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
                 +  E+  +G  +T     +V ++  G       N D+R     W     ++  E
Sbjct: 62  LK----ESPEIPVIGITSTSQRQGIVLINKVGKAFLGLPNIDNRGR--EWEA--GIEDRE 113

Query: 171 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 230
           +I  +        G   +      KL+ +K+     W+ + +   +SDW++   +G    
Sbjct: 114 EIYEKT-------GRLPTALFSAAKLMGLKKRQPSLWAGIAKITSISDWVTEMLSG---- 162

Query: 231 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 290
                     Y       Q  E    D+E+  W +      G+   I     + G S+  
Sbjct: 163 -------ILVY----EPSQACETLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLGK 211

Query: 291 PGHPLGSGLTPAAAKELGLVPGTPV-----GTSL----IDAHAGGVGVMESVPESVSEAK 341
                   +    A ELGL     V      T L    + A  G + ++      +++  
Sbjct: 212 --------IKKEMADELGLSEDAEVIAGGGDTQLALKSVGAGVGDIVIVSGTTTPITKIT 263

Query: 342 ENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWG 377
           + +      R  L C T      V  N    PGV G
Sbjct: 264 DYKYYDKQERAWLNCHTGGGTWLVETN----PGVTG 295

This subgroup consists of uncharacterized hypothetical bacterial proteins with similarity to bacterial autoinducer-2 (AI-2) kinases, which catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, leading to the inactivation of lsrR, the repressor of the lsr operon. Members of this subgroup belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 437

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 436 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQ 495
           MI E       A  + ++  PDF      +      G I G++L ++   +   Y A ++
Sbjct: 325 MIEEAEKAGPGA--DGVNFEPDF------LQLGDGNGSIEGLSLHTTRGHI---YRAALE 373

Query: 496 GIAYGTRHIVEHCNAHGH-KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLG 554
           G+    +  +++    G  K   L+  GG +KN L+ Q  AD +  P+ +  + ES +LG
Sbjct: 374 GLTNQLKRNLDYLEQVGQFKAKPLILVGGGSKNTLWNQIRADALQIPLKVVDQAESTVLG 433

Query: 555 AAILGAVAAKRYSSL 569
           AA+        Y+S 
Sbjct: 434 AAMFAFAGVGIYNSP 448

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	621
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	100.0
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	100.0
PRK15027	484	xylulokinase; Provisional	100.0
PRK04123	548	ribulokinase; Provisional	100.0
PRK00047	498	glpK glycerol kinase; Provisional	100.0
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	100.0
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	100.0
PLN02295	512	glycerol kinase	100.0
PTZ00294	504	glycerol kinase-like protein; Provisional	100.0
COG1069	544	AraB Ribulose kinase [Energy production and conver	100.0
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	100.0
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	100.0
COG0554	499	GlpK Glycerol kinase [Energy production and conver	100.0
PRK10331	470	L-fuculokinase; Provisional	100.0
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	100.0
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	100.0
PLN02669	556	xylulokinase	100.0
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	100.0
KOG2517	516	consensus Ribulose kinase and related carbohydrate	100.0
PRK10640	471	rhaB rhamnulokinase; Provisional	100.0
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	100.0
KOG2531	545	consensus Sugar (pentulose and hexulose) kinases [	100.0
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	99.98
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.54
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	98.43
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.05
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	97.66
PRK13317	277	pantothenate kinase; Provisional	97.62
PRK09698	302	D-allose kinase; Provisional	97.37
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	97.3
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	97.19
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	97.13
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	97.11
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	97.08
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	97.06
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	97.04
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	97.02
PRK09557	301	fructokinase; Reviewed	96.94
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.94
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	96.91
PRK13410	668	molecular chaperone DnaK; Provisional	96.9
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	96.89
CHL00094	621	dnaK heat shock protein 70	96.82
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	96.79
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	96.59
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	96.57
PRK13318	258	pantothenate kinase; Reviewed	96.48
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	96.48
PRK13321	256	pantothenate kinase; Reviewed	96.46
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	96.45
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	96.4
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	96.39
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.34
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	96.28
PRK05183	616	hscA chaperone protein HscA; Provisional	96.26
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	96.24
PRK01433	595	hscA chaperone protein HscA; Provisional	96.2
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.17
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	96.15
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	96.09
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	95.97
PRK00292	316	glk glucokinase; Provisional	95.97
PRK13928	336	rod shape-determining protein Mbl; Provisional	95.86
PTZ00400	663	DnaK-type molecular chaperone; Provisional	95.77
PRK05082	291	N-acetylmannosamine kinase; Provisional	95.68
PLN03184	673	chloroplast Hsp70; Provisional	95.65
PTZ00009	653	heat shock 70 kDa protein; Provisional	95.57
PRK11678	450	putative chaperone; Provisional	95.44
PRK13411	653	molecular chaperone DnaK; Provisional	95.22
PRK12408	336	glucokinase; Provisional	94.89
PRK13927	334	rod shape-determining protein MreB; Provisional	94.84
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	94.75
PRK14101	638	bifunctional glucokinase/RpiR family transcription	94.7
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	94.65
PRK09472	420	ftsA cell division protein FtsA; Reviewed	94.5
KOG1794	336	consensus N-Acetylglucosamine kinase [Carbohydrate	94.29
PRK13930	335	rod shape-determining protein MreB; Provisional	94.19
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	94.05
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	93.62
PRK13929	335	rod-share determining protein MreBH; Provisional	93.38
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	93.22
KOG0103	727	consensus Molecular chaperones HSP105/HSP110/SSE1,	93.2
PRK09472	420	ftsA cell division protein FtsA; Reviewed	93.11
PRK09585	365	anmK anhydro-N-acetylmuramic acid kinase; Reviewed	93.03
PRK13317	277	pantothenate kinase; Provisional	93.01
PLN02920	398	pantothenate kinase 1	93.0
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	92.65
PF03702	364	UPF0075: Uncharacterised protein family (UPF0075);	92.31
KOG0100	663	consensus Molecular chaperones GRP78/BiP/KAR2, HSP	91.91
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	91.86
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	91.24
TIGR00749	316	glk glucokinase, proteobacterial type. This model	90.64
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	90.36
PF13941	457	MutL: MutL protein	90.32
PLN02914	490	hexokinase	90.12
PTZ00288	405	glucokinase 1; Provisional	89.81
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	89.46
PRK13324	258	pantothenate kinase; Reviewed	89.17
PF02543	360	CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036	89.08
COG2377	371	Predicted molecular chaperone distantly related to	89.07
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	88.31
PLN02362	509	hexokinase	88.14
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	88.08
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	88.08
PLN02405	497	hexokinase	88.02
PLN02596	490	hexokinase-like	87.98
COG2192	555	Predicted carbamoyl transferase, NodU family [Post	87.5
KOG0101	620	consensus Molecular chaperones HSP70/HSC70, HSP70	87.33
PLN02666	1275	5-oxoprolinase	86.77
PTZ00107	464	hexokinase; Provisional	86.7
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	86.69
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	86.62
TIGR03281	326	methan_mark_12 putative methanogenesis marker prot	86.37
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	86.34
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	86.32
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	86.17
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	86.07
COG0145	674	HyuA N-methylhydantoinase A/acetone carboxylase, b	86.03
COG4020	332	Uncharacterized protein conserved in archaea [Func	85.82
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	85.29
PRK13326	262	pantothenate kinase; Reviewed	85.18
PRK09604	332	UGMP family protein; Validated	85.14
PRK03011	358	butyrate kinase; Provisional	84.99
PRK14878	323	UGMP family protein; Provisional	84.91
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	84.11
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	83.59
COG0533	342	QRI7 Metal-dependent proteases with possible chape	83.26
COG3734	306	DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate	82.73
PRK13320	244	pantothenate kinase; Reviewed	82.35
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	82.34
PRK13331	251	pantothenate kinase; Reviewed	82.27
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	81.17
TIGR00671	243	baf pantothenate kinase, type III. This model desc	81.0
PRK09605	535	bifunctional UGMP family protein/serine/threonine	80.99
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	80.5
COG3426	358	Butyrate kinase [Energy production and conversion]	80.28
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	80.24
PRK09604	332	UGMP family protein; Validated	80.18

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=100.00  E-value=1.1e-93  Score=800.56  Aligned_cols=531  Identities=45%  Similarity=0.773  Sum_probs=445.0

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      ++||||+|||++|+++||.+|+++.+.+.+++... .+|+.||||++||+++++++++++++.+.+..+|++||||+|++
T Consensus         1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s   80 (541)
T TIGR01315         1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS   80 (541)
T ss_pred             CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence            37999999999999999999999999999988654 88999999999999999999999998777778899999999999


Q ss_pred             eEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhccee
Q 007010          135 LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM  214 (621)
Q Consensus       135 ~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l  214 (621)
                      +|+||++|+||....+.++.+|+|+|+|.|+.++++++++...+++++||+++++.++++||+|+++|+||+|+++++|+
T Consensus        81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l  160 (541)
T TIGR01315        81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF  160 (541)
T ss_pred             ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence            99999999999655555556799999999999999999764457889999999999999999999999999999999999


Q ss_pred             cchhHHhhhhccccccccccccccccccccchhhccccccccc---CCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010          215 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  291 (621)
Q Consensus       215 ~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D---~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~  291 (621)
                      +++|||.|+|||+...+..+               ++.+++||   +++++||+++++.+||+......||++.|+++++
T Consensus       161 ~~~dyl~~~LTG~~~~d~~~---------------as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~  225 (541)
T TIGR01315       161 DLTDFLTWRATGKEIRSFCS---------------VVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSP  225 (541)
T ss_pred             chhhhheeeeecchhHhHhH---------------HhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCC
Confidence            99999999999987533322               22334566   7999999999999999952111244444589999


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhccccc--ccCccchhhhhhhhhhccceEEEEecccceecceeCcc
Q 007010          292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  369 (621)
Q Consensus       292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g--~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~  369 (621)
                      ++++|+.|++++|+++||++||||++|++|++|+++|+++  ..++|   ..++    ..+++.+++|||+++..+.+++
T Consensus       226 ~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~~----~~~~~~~~~GTs~~~~~~~~~~  298 (541)
T TIGR01315       226 GELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVSQ----AFTRLAAVAGTSTCHMAMTKGP  298 (541)
T ss_pred             CcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---cccC----CCCcEEEEecCceEEEEecCCC
Confidence            9999933999999999999999999999999999999844  24432   0000    0237889999999988888776


Q ss_pred             cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC-C-ccC
Q 007010          370 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP-F-VAA  447 (621)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p-~-~~~  447 (621)
                      ..+++.+.++.++..++.|+.+++++++|.+++||++.+...++........+.+.|++|++.++++...  +| . +|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~  376 (541)
T TIGR01315       299 VFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISY  376 (541)
T ss_pred             ccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCcccc
Confidence            6666544333234567889999999999999999999763211111111122345687777765544321  11 0 113


Q ss_pred             CCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCC
Q 007010          448 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN  527 (621)
Q Consensus       448 g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s  527 (621)
                      +++|++|+|||.|+|+|+||+++||+|+||+.+|++.++++++||++|||||.+|++++.|++.+.++++|+++||+++|
T Consensus       377 ~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s  456 (541)
T TIGR01315       377 LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQN  456 (541)
T ss_pred             CCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccC
Confidence            45899999999999999999999999999999999988788899999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhH-HHHHHHHHHHHHHH
Q 007010          528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELF  606 (621)
Q Consensus       528 ~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~  606 (621)
                      ++|+||+|||+|+||+++...|++++|||++|++++|.|+|++++.+.+.+..++|+|  +++.+ +.|+++|++|+++|
T Consensus       457 ~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~  534 (541)
T TIGR01315       457 PLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLA  534 (541)
T ss_pred             HHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988888888899999  99999 99999999999999


Q ss_pred             HHHHHH
Q 007010          607 EQQVSQ  612 (621)
Q Consensus       607 ~~~~~~  612 (621)
                      ++++.|
T Consensus       535 ~~~~~~  540 (541)
T TIGR01315       535 RTQQEY  540 (541)
T ss_pred             HHHHhh
Confidence            999887

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=100.00  E-value=2.2e-90  Score=769.84  Aligned_cols=497  Identities=21%  Similarity=0.346  Sum_probs=439.7

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (621)
                      |+||||+|||++|++++|.+|+++++.+.+++... .+|+.|||+++||+++++++++++++.+.+ .+|.+||||+| +
T Consensus         1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~   79 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH   79 (505)
T ss_pred             CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence            58999999999999999999999999999888654 789999999999999999999999876544 67999999998 9


Q ss_pred             ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010          134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  211 (621)
Q Consensus       134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  211 (621)
                      ++|+||++|+||         +|+|+|+|.|+.++++++.+..  ++++++||+++++.++++||+|+++|+|++|+|++
T Consensus        80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~  150 (505)
T TIGR01314        80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA  150 (505)
T ss_pred             eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence            999999999999         8999999999999999998764  57899999999999999999999999999999999


Q ss_pred             ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010          212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  291 (621)
Q Consensus       212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~  291 (621)
                      +|++++|||.|+|||+.. ++.|              .+|.|++||+++++|++++++.+||++..   ||    +++++
T Consensus       151 ~~l~~~dyl~~~LTG~~~-~d~s--------------~As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~l~~~  208 (505)
T TIGR01314       151 KYLEIKGYIFQRLFGTYK-IDYS--------------TASATGMFNLFELDWDKEALELTGIKESQ---LP----KLVPT  208 (505)
T ss_pred             EEECHHHHHHHHHcCCce-eEhh--------------hhhhhcceeCCCCCCCHHHHHhcCCCHHH---CC----CCcCc
Confidence            999999999999999864 2333              25678899999999999999999999753   47    78899


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccc
Q 007010          292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF  371 (621)
Q Consensus       292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~  371 (621)
                      ++++|+ |++++|+.+||++||||++|++|++|+++|+ |..+|              +++++++|||+++..+++++..
T Consensus       209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~  272 (505)
T TIGR01314       209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIKK--------------GEAAVTIGTSGAIRTVIDKPKT  272 (505)
T ss_pred             ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCCC--------------CcEEEEechhheeeeccCcCcc
Confidence            999997 9999999999999999999999999999999 66655              5899999999998888887665


Q ss_pred             cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCC
Q 007010          372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED  451 (621)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g  451 (621)
                      ++... .+++...++.|+.+++++++|.+++||++.+...  ....++..+.+.|+.|++++++.         |++++|
T Consensus       273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~~---------~~g~~g  340 (505)
T TIGR01314       273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAARV---------SPGADG  340 (505)
T ss_pred             CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhhC---------CCCCCc
Confidence            54322 2222233467999999999999999999987532  11122233557799998887653         368889


Q ss_pred             eEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHH
Q 007010          452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLF  530 (621)
Q Consensus       452 l~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w  530 (621)
                      ++|+|||.|+|+|+||+++||+|+|++.+|+++|+   +||++||+||.++++++.+++ .+.++++|+++||+++|++|
T Consensus       341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w  417 (505)
T TIGR01314       341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHM---IRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW  417 (505)
T ss_pred             eEEecccccCCCCCCCCCccEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHH
Confidence            99999999999999999999999999999999985   569999999999999999977 67789999999999999999


Q ss_pred             HHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007010          531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV  610 (621)
Q Consensus       531 ~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~  610 (621)
                      +||+|||+|+||+++...|++++|||++|++++|.++|++++ ..+.+..++|+|  ++++++.|+++|++|+++|++++
T Consensus       418 ~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~~~~~~~  494 (505)
T TIGR01314       418 RQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGTTETHTP--IEKNFEIYREISPIFINLSRSLL  494 (505)
T ss_pred             HHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886 678788899999  99999999999999999999999


Q ss_pred             HHHHHHHH
Q 007010          611 SQRSIMAQ  618 (621)
Q Consensus       611 ~~~~~~~~  618 (621)
                      +...-+.+
T Consensus       495 ~~~~~~~~  502 (505)
T TIGR01314       495 AEYEQIAD  502 (505)
T ss_pred             HHHHHHHH
Confidence            87766655

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK15027 xylulokinase; Provisional

Probab=100.00  E-value=2.8e-90  Score=765.19  Aligned_cols=479  Identities=24%  Similarity=0.342  Sum_probs=421.7

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (621)
                      ++||||+|||++|+++||.+|++++..+.+++... .+|+.||||++||+++++++++++++.  ..++|.+||+|+| +
T Consensus         1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~   78 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH   78 (484)
T ss_pred             CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence            58999999999999999999999999999998654 789999999999999999999999875  3568999999998 9


Q ss_pred             ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcce
Q 007010          134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  213 (621)
Q Consensus       134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  213 (621)
                      ++++||++|+|+         +|+|+|+|+|+.++++++.+....++++||.++++.++++||+|+++|+||+|+|+++|
T Consensus        79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~  149 (484)
T PRK15027         79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV  149 (484)
T ss_pred             ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence            999999999999         89999999999999999987655677899999999999999999999999999999999


Q ss_pred             ecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007010          214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  293 (621)
Q Consensus       214 l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~  293 (621)
                      ++++|||.|+|||+... +.++              ++.|++||+++++|++++++.+||+...   ||    +++++++
T Consensus       150 ~~~~dyl~~~LTG~~~~-d~s~--------------as~t~l~d~~~~~w~~~ll~~~gi~~~~---lP----~v~~~~~  207 (484)
T PRK15027        150 LLPKDYLRLRMTGEFAS-DMSD--------------AAGTMWLDVAKRDWSDVMLQACHLSRDQ---MP----ALYEGSE  207 (484)
T ss_pred             cChHHHHHhhhcCCccc-cHHH--------------hhcccccccccCCCcHHHHHHhCCCHHH---CC----CCCCCcc
Confidence            99999999999998742 3332              4577899999999999999999999753   46    6889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccC
Q 007010          294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  373 (621)
Q Consensus       294 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~  373 (621)
                      ++|+ |++++|+++||+ +|||++|++|++|+++|+ |..+|              +++++++|||+++..+++++..++
T Consensus       208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~  270 (484)
T PRK15027        208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP  270 (484)
T ss_pred             cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence            9997 999999999997 699999999999999999 67665              589999999999888887765554


Q ss_pred             CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeE
Q 007010          374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH  453 (621)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~  453 (621)
                      .......++..|+.|++++.+.++|.+++|+++.+..             +.|+++.+.+++         +|++++|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~---------~~~g~~gl~  328 (484)
T PRK15027        271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ---------ADESAEPVW  328 (484)
T ss_pred             hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh---------CCCCCCceE
Confidence            3211123456688899999999999999999987531             224555554433         246889999


Q ss_pred             EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHH
Q 007010          454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ  533 (621)
Q Consensus       454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi  533 (621)
                      |+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.+++.|.++++|+++||++||++|+||
T Consensus       329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi  405 (484)
T PRK15027        329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQM  405 (484)
T ss_pred             EecccccCCCcCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHH
Confidence            999999999999999999999999999999985   56999999999999999998878889999999999999999999


Q ss_pred             HHHhhCCceeecc-CCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007010          534 HADIIGCPIILPR-ENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ  612 (621)
Q Consensus       534 ~Advlg~pV~~~~-~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~  612 (621)
                      +||++|+||++.. ..+++++|||++|++++|.++|++++. .+.+..++|+|  |+++++.|+++|++|+++|++++++
T Consensus       406 ~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~Y~~~~~~y~~~y~~~~~~  482 (484)
T PRK15027        406 LADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELL-PQLPLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPL  482 (484)
T ss_pred             HHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHH-hhcCCCceECC--CHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            9999999997765 445889999999999999999999865 55577899999  9999999999999999999998754

>PRK04123 ribulokinase; Provisional

Probab=100.00  E-value=8.7e-88  Score=756.14  Aligned_cols=507  Identities=29%  Similarity=0.453  Sum_probs=431.2

Q ss_pred             CCeEEEEecCccceeeEEEcC-CCCEEEEEEeeeccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVK  125 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~~~~~-------~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~  125 (621)
                      ++|+||||+|||++|+++||. +|+++.+++.+++.+       +.+|++||||++||+++++++++++++.+.++.+|.
T Consensus         2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~   81 (548)
T PRK04123          2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVV   81 (548)
T ss_pred             CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence            369999999999999999995 999999999998743       478999999999999999999999998877778899


Q ss_pred             EEEEcCC-CceEEecCCCCceeecCC--CCCCcceeEEcCcchHHHHHHHHccC----hhHHhhh-CCCCCCCChHHHHH
Q 007010          126 GVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLL  197 (621)
Q Consensus       126 aIgis~~-~~~v~vD~~G~pl~~~~~--~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~  197 (621)
                      +||||+| +++|+||++|+||.+..+  +++..|+|+|+|.|+.++++++++..    +++++.+ |+.+++.++++||+
T Consensus        82 aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~  161 (548)
T PRK04123         82 GIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKIL  161 (548)
T ss_pred             EEEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHH
Confidence            9999998 999999999999942221  22334999999999999999998753    3577554 99999999999999


Q ss_pred             HHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCC-CCCCCHHHHHHcC----
Q 007010          198 WVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG----  272 (621)
Q Consensus       198 Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~-~~~Ws~~ll~~~g----  272 (621)
                      |+++|+||+|+|+++|++++|||.|+|||+..++..+.          ..+.++.+++||++ ++.||+++|+.+|    
T Consensus       162 Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----------~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~  231 (548)
T PRK04123        162 HVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----------SRCAAGHKALWHESWGGLPSADFFDALDPLLA  231 (548)
T ss_pred             HHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----------chhhcccccccccccCCCCCHHHHHHhccchh
Confidence            99999999999999999999999999999764222211          11124567899999 5666999999996    


Q ss_pred             --CCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccc
Q 007010          273 --LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH  350 (621)
Q Consensus       273 --i~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~  350 (621)
                        |+..+   ||    +++++++++|+ |++++|+.+||++|+||++|+||++|+++|+ |. ++              +
T Consensus       232 ~~i~~~l---lP----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~~--------------g  287 (548)
T PRK04123        232 RGLRDKL---FT----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-EP--------------G  287 (548)
T ss_pred             hhhHhhc---CC----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-CC--------------C
Confidence              77543   35    78899999997 9999999999999999999999999999999 66 55              4


Q ss_pred             eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010          351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  430 (621)
Q Consensus       351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (621)
                      ++++++||++++..+++++...+..+..+..+..++.|.++++++++|.+++||++.+...+ ....+++.+.+.|++|+
T Consensus       288 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~-~~~~~~~~~~~~~~~l~  366 (548)
T PRK04123        288 TLVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPE-YKDEAEARGKQLLELLT  366 (548)
T ss_pred             cEEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHh-HHHHHHhcCCcHHHHHH
Confidence            78999999999888877654433332222223457889999999999999999999874221 11112223456788888


Q ss_pred             HHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007010          431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA  510 (621)
Q Consensus       431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~  510 (621)
                      +++++.         |++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++||++|.++++++.|++
T Consensus       367 ~~a~~~---------~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~  434 (548)
T PRK04123        367 EAAAKQ---------PPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFED  434 (548)
T ss_pred             HHHHhc---------CCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            887653         36899999999999999999999999999999999999985   569999999999999999998


Q ss_pred             CCCCcCEEEEecCC-CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhh-cCCcEEcCCCC
Q 007010          511 HGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKD  588 (621)
Q Consensus       511 ~g~~~~~I~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~-~~~~~~~P~~~  588 (621)
                      .+.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|  +
T Consensus       435 ~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~  512 (548)
T PRK04123        435 QGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQP--D  512 (548)
T ss_pred             cCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEec--C
Confidence            77888999999999 99999999999999999999999999999999999999999999999877775 45678999  9


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 007010          589 PKVKKYHDAKYLIFRELFEQQ  609 (621)
Q Consensus       589 ~~~~~~y~~~y~~y~~l~~~~  609 (621)
                      ++.++.|+++|++|+++|+.+
T Consensus       513 ~~~~~~y~~~y~~y~~l~~~~  533 (548)
T PRK04123        513 PENVARYEQLYQEYKQLHDYF  533 (548)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988

>PRK00047 glpK glycerol kinase; Provisional

Probab=100.00  E-value=4.2e-88  Score=750.33  Aligned_cols=479  Identities=20%  Similarity=0.327  Sum_probs=414.7

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+|||++|+++||.+|+++++.+.+++... .+|++||||++||+++++++++++++.+.++++|.+||+|+|
T Consensus         4 ~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~   83 (498)
T PRK00047          4 KKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITNQ   83 (498)
T ss_pred             cCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEecC
Confidence            3699999999999999999999999999999998654 889999999999999999999999888777788999999998


Q ss_pred             -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                       +++|+||++ |+|+         +|+|+|+|.|+.++++++.+..  ++++++||+++++.++++||+|+++|+||+|+
T Consensus        84 ~~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~  154 (498)
T PRK00047         84 RETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARE  154 (498)
T ss_pred             cceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHH
Confidence             999999966 9999         8999999999999999998653  45899999999999999999999999999988


Q ss_pred             hhc----ceecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          209 MVF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       209 ~~~----~~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      ++.    +|++++|||.|+|||.. ..++.|+              +|+|++||+++++||+++|+.+|||+.+   || 
T Consensus       155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP-  216 (498)
T PRK00047        155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------------ASRTMLFNIHTLDWDDELLELLDIPRSM---LP-  216 (498)
T ss_pred             HHhcCCeEEeChHHhHhhhhcCCCeeEeechH--------------HhhhhccccccCccCHHHHHhcCCCHHH---CC-
Confidence            775    37889999999999752 2344443              5577899999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. |+++    +++.+||||++|++|++|+++|+ |..+|              +++++++|||+++.
T Consensus       217 ---~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~~--------------g~~~~~~GTs~~~~  273 (498)
T PRK00047        217 ---EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFEP--------------GMAKNTYGTGCFML  273 (498)
T ss_pred             ---CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCCC--------------CceEEeeccceEEE
Confidence               68899999997 9987    67779999999999999999998 66655              58999999999866


Q ss_pred             cee-CcccccCCc-cccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 007010          364 AVS-RNKLFIPGV-WGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  439 (621)
Q Consensus       364 ~~~-~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  439 (621)
                      +.+ +++..++.. ...++ +..++  .|+++++++++|.+++|++++++..            ..++++++++++.   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~~---  337 (498)
T PRK00047        274 MNTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARKV---  337 (498)
T ss_pred             EecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhcC---
Confidence            666 455554432 21122 22344  6999999999999999999987421            1134455544432   


Q ss_pred             cCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007010          440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  518 (621)
Q Consensus       440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I  518 (621)
                             ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|++ .|.++++|
T Consensus       338 -------~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i  407 (498)
T PRK00047        338 -------EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI---IRATLESIAYQTRDVLDAMQADSGIRLKEL  407 (498)
T ss_pred             -------CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence                   3678999999999999999999999999999999999985   569999999999999999986 47889999


Q ss_pred             EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHH
Q 007010          519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  598 (621)
Q Consensus       519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~  598 (621)
                      +++||+++|++|+||+|||||+||+++...|++++|||++|++++|.|++++++ .++.+..++|+|  ++++++ |+++
T Consensus       408 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~~  483 (498)
T PRK00047        408 RVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEP--QMDEEE-REKL  483 (498)
T ss_pred             EEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECC--CCCHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999999987 677778899999  889887 9999


Q ss_pred             HHHHHHHHHHHHHH
Q 007010          599 YLIFRELFEQQVSQ  612 (621)
Q Consensus       599 y~~y~~l~~~~~~~  612 (621)
                      |++|+++|++++.|
T Consensus       484 ~~~~~~~~~~~~~~  497 (498)
T PRK00047        484 YAGWKKAVKRTLAW  497 (498)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988765

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=100.00  E-value=1.8e-87  Score=750.82  Aligned_cols=504  Identities=29%  Similarity=0.438  Sum_probs=425.5

Q ss_pred             eEEEEecCccceeeEEEc-CCCCEEEEEEeeecc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 007010           56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE  122 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~------~~~------~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~  122 (621)
                      |+||||+|||++|++||| .+|++++..+.++++      ++.      +|++||||++||+++++++++++++.+.+++
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~   81 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA   81 (536)
T ss_pred             eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            799999999999999999 899999999999874      233      7999999999999999999999998877677


Q ss_pred             CEEEEEEcCC-CceEEecCCCCceeecCC--CCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHH
Q 007010          123 EVKGVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK  195 (621)
Q Consensus       123 ~I~aIgis~~-~~~v~vD~~G~pl~~~~~--~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k  195 (621)
                      +|++||+|+| +++|+||++|+||.++.+  ..+..++|+|+|+|+.+++++|++..    +.++++||+++++.++++|
T Consensus        82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k  161 (536)
T TIGR01234        82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK  161 (536)
T ss_pred             HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence            8999999998 999999999999931000  00111299999999999999998753    4688999999999999999


Q ss_pred             HHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCC--
Q 007010          196 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL--  273 (621)
Q Consensus       196 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi--  273 (621)
                      |+|+++|+||+|+++.+|++++|||.|+|||+...+ .+.              ++.+++++...+.|++++++.+|+  
T Consensus       162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~d-~s~--------------a~~~~l~~~~w~~~~~~~l~~~g~~~  226 (536)
T TIGR01234       162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIRRG-RCT--------------AGYKALWHESWGYPSASFFDELNPIL  226 (536)
T ss_pred             HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcccc-chh--------------cccceeccccccCCCHHHHHHhcchh
Confidence            999999999999999999999999999999987532 332              234455555555559999999996  


Q ss_pred             ----CccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhcc
Q 007010          274 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC  349 (621)
Q Consensus       274 ----~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~  349 (621)
                          |+.+   +|    +++++++++|. |++++|+++||++|+||++|++|++|+++|+ |..++              
T Consensus       227 ~~~lp~~~---~p----~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------  283 (536)
T TIGR01234       227 NRHLPDKL---FT----DIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQP--------------  283 (536)
T ss_pred             hhhhhhhc---CC----ceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-ccccC--------------
Confidence                4432   24    78899999997 9999999999999999999999999999999 66655              


Q ss_pred             ceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHH
Q 007010          350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL  429 (621)
Q Consensus       350 ~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l  429 (621)
                      |++++++|||.++..+.+++...+..+..+..+..++.|.++++++++|.+++||++.+...+ .....+..+.+.|+.|
T Consensus       284 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~l  362 (536)
T TIGR01234       284 GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPE-LKTEANASQKQLHEAL  362 (536)
T ss_pred             CcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchH-HHHHHHhcCCCHHHHH
Confidence            589999999999877776544333221111112446789999999999999999999874321 1111222234568888


Q ss_pred             HHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010          430 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN  509 (621)
Q Consensus       430 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~  509 (621)
                      ++.+++.         |++++|++|+|||.|||+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|+
T Consensus       363 ~~~a~~~---------p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~  430 (536)
T TIGR01234       363 SEAAAKQ---------PSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFT  430 (536)
T ss_pred             HHHHHhC---------CCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            8777653         36899999999999999999999999999999999999985   66999999999999999998


Q ss_pred             hCCCCcCEEEEecCC-CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhh-cCCcEEcCCC
Q 007010          510 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSK  587 (621)
Q Consensus       510 ~~g~~~~~I~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~-~~~~~~~P~~  587 (621)
                      +.|.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|  
T Consensus       431 ~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--  508 (536)
T TIGR01234       431 DSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTP--  508 (536)
T ss_pred             hcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECC--
Confidence            878889999999999 99999999999999999999999999999999999999999999999877776 56889999  


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHH
Q 007010          588 DPKVKKYHDAKYLIFRELFEQQVSQ  612 (621)
Q Consensus       588 ~~~~~~~y~~~y~~y~~l~~~~~~~  612 (621)
                      ++++++.|+++|++|+++|+++-.|
T Consensus       509 ~~~~~~~y~~~y~~y~~l~~~~~~~  533 (536)
T TIGR01234       509 CSENAQRYEQLYARYQELAMSFGQY  533 (536)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999988665

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=100.00  E-value=3.7e-87  Score=746.14  Aligned_cols=493  Identities=22%  Similarity=0.306  Sum_probs=428.2

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccc--c-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--K-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~--~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      |+|+||||+|||++|+++||.+|++++..+.+++..  . .+|++||||++||+++++++++++++.+..+++|.+||+|
T Consensus         2 m~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s   81 (520)
T PRK10939          2 MSYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSAT   81 (520)
T ss_pred             CcEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence            369999999999999999999999999999888643  2 6899999999999999999999998877777889999999


Q ss_pred             CC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHHHHHHHHhcch
Q 007010          131 AT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQE  205 (621)
Q Consensus       131 ~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe  205 (621)
                      +| +++|+||++|+|+         .+ +.|.|.|+.++++++++..    ++++++||.++ +.++++||+|+++|+||
T Consensus        82 ~~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe  150 (520)
T PRK10939         82 SMREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPD  150 (520)
T ss_pred             CCcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcH
Confidence            98 9999999999999         44 5799999999999998753    46889999875 67899999999999999


Q ss_pred             hHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccC
Q 007010          206 SWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG  285 (621)
Q Consensus       206 ~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~  285 (621)
                      +|+|+.+|++++|||.|+|||+.. ++.|+              ++.|++||+++++|++++++.+||++.+   ||   
T Consensus       151 ~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------------As~tgl~d~~~~~W~~~ll~~~gi~~~~---lP---  209 (520)
T PRK10939        151 IYRQAHTITMISDWIAYMLSGELA-VDPSN--------------AGTTGLLDLVTRDWDPALLEMAGLRADI---LP---  209 (520)
T ss_pred             HHHHhheEechhHhhhheeeCcee-eEhhh--------------hhceeeeecCCCCCCHHHHHHcCCCHHH---CC---
Confidence            999999999999999999999874 33332              5678899999999999999999999754   46   


Q ss_pred             cccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecce
Q 007010          286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV  365 (621)
Q Consensus       286 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~  365 (621)
                       +++++++++|. |++++|+.+||++|+||++|++|++|+++|+ |+.+|              |++++++|||.++...
T Consensus       210 -~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~  272 (520)
T PRK10939        210 -PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVRP--------------GQTAVLGGTFWQQVVN  272 (520)
T ss_pred             -CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-CcccC--------------CcEEEeecCcceeEEe
Confidence             78899999997 9999999999999999999999999999998 67655              4789999999987777


Q ss_pred             eCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010          366 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV  445 (621)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~  445 (621)
                      ++++..++........+..++.|.+++.++++|.+++||+++|+..+..  .++..+.+.|++|++++++.         
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~---------  341 (520)
T PRK10939        273 LPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASRV---------  341 (520)
T ss_pred             ccccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhhC---------
Confidence            7766555532111223566888999999999999999999987543221  12234567899998887653         


Q ss_pred             cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEe
Q 007010          446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLAC  521 (621)
Q Consensus       446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~---~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~  521 (621)
                      |+|++|+  +|||.|+|.|.+++++||+|+|++.+|   ++.|   ++||++|||||.+|++++.+++. +.++++|+++
T Consensus       342 ~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~  416 (520)
T PRK10939        342 PVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKAT---LFRALEENAAIVSACNLQQIAAFSGVFPSSLVFA  416 (520)
T ss_pred             CCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            3678787  699999987655568999999999987   6666   56799999999999999999874 7889999999


Q ss_pred             cCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHH
Q 007010          522 GGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLI  601 (621)
Q Consensus       522 GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~  601 (621)
                      ||+++|++|+||+|||+|+||+++...|++++|||++|++++|.|+|++++.+.+.+..++|+|  ++++++.|+++|++
T Consensus       417 GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~y~~  494 (520)
T PRK10939        417 GGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRWERTFEP--NPENHELYQEAKEK  494 (520)
T ss_pred             CCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcccCceECc--CHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888788899999  99999999999999


Q ss_pred             HHHHHHHHHHHH
Q 007010          602 FRELFEQQVSQR  613 (621)
Q Consensus       602 y~~l~~~~~~~~  613 (621)
                      |+++|+.+++++
T Consensus       495 y~~l~~~~~~~~  506 (520)
T PRK10939        495 WQAVYADQLGLV  506 (520)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888764

>PLN02295 glycerol kinase

Probab=100.00  E-value=2.6e-87  Score=745.57  Aligned_cols=480  Identities=19%  Similarity=0.316  Sum_probs=411.3

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEEEc
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA  130 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~----I~aIgis  130 (621)
                      |+||||+|||++|+++||.+|+++++.+.+++... .+||+||||++||+++++++++++++.+.++++    |.+||+|
T Consensus         1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s   80 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT   80 (512)
T ss_pred             CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence            58999999999999999999999999999998654 899999999999999999999999988776666    7999999


Q ss_pred             CC-CceEEe-cCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHHHHHHHHhcc
Q 007010          131 AT-CSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ  204 (621)
Q Consensus       131 ~~-~~~v~v-D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~p  204 (621)
                      +| +++|+| |++|+||         +|+|+|+|.|+.++++++++..    +.++++||+++++.++++||+|+++|+|
T Consensus        81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P  151 (512)
T PLN02295         81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD  151 (512)
T ss_pred             cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence            98 999999 5889999         8999999999999999998753    2456999999999999999999999999


Q ss_pred             hhHHhh----cceecchhHHhhhhcccc----ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCcc
Q 007010          205 ESWSMV----FRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL  276 (621)
Q Consensus       205 e~~~~~----~~~l~~~dyl~~~LTG~~----~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~  276 (621)
                      |+|+++    .+|++++|||.|+|||+.    ..++.|+              +++|++||+++++||+++++.+|||+.
T Consensus       152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------------As~t~l~D~~~~~W~~ell~~~gi~~~  217 (512)
T PLN02295        152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------------ASRTMLMNLKTLDWDKPTLEALGIPAE  217 (512)
T ss_pred             HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------------hHHhhccCcccCcCCHHHHHHcCCCHH
Confidence            999655    489999999999999942    1244443              567889999999999999999999975


Q ss_pred             ccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEe
Q 007010          277 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC  356 (621)
Q Consensus       277 ~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~  356 (621)
                      +   ||    +++++++++|+ |++++++     +||||++|++|++|+++|+ |. .+              +++.+++
T Consensus       218 ~---lP----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~~--------------g~~~~~~  268 (512)
T PLN02295        218 I---LP----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-RP--------------GEAKSTY  268 (512)
T ss_pred             H---CC----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-CC--------------CCeEEEE
Confidence            4   47    68899999997 9987765     4999999999999999999 66 55              4789999


Q ss_pred             cccceecceeCcc-cccC-Ccccccccc---ccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHH
Q 007010          357 GTSTCHMAVSRNK-LFIP-GVWGPFWSA---MVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG  431 (621)
Q Consensus       357 GTs~~~~~~~~~~-~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~  431 (621)
                      ||++.+.+.++.+ ..++ +....+.+.   ..|+.|+++++++++|.+++||++.+...            ..++++++
T Consensus       269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~  336 (512)
T PLN02295        269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA  336 (512)
T ss_pred             cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence            9998866555542 3332 222112111   12788999999999999999999977421            12445555


Q ss_pred             HHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007010          432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH  511 (621)
Q Consensus       432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~  511 (621)
                      ++++.          ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|++.
T Consensus       337 ~a~~~----------~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~  403 (512)
T PLN02295        337 LAATV----------DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHI---ARAVLESMCFQVKDVLDAMRKD  403 (512)
T ss_pred             HHHhC----------CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence            55432          2678999999999999999999999999999999999996   5599999999999999999864


Q ss_pred             ------CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcC
Q 007010          512 ------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP  585 (621)
Q Consensus       512 ------g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P  585 (621)
                            +.++++|+++||+++|++||||+|||+|+||+++...|++++|||++|++++|.|++++++...+++..++|+|
T Consensus       404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P  483 (512)
T PLN02295        404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP  483 (512)
T ss_pred             hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC
Confidence                  23688999999999999999999999999999999999999999999999999999988765578888899999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010          586 SKDPKVKKYHDAKYLIFRELFEQQVSQRSI  615 (621)
Q Consensus       586 ~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~  615 (621)
                        ++++++ |+++|++|+++|++...++++
T Consensus       484 --~~~~~~-y~~~y~~~~~~~~~~~~~~~~  510 (512)
T PLN02295        484 --KLDEEE-RAKRYASWCKAVERSFDLADL  510 (512)
T ss_pred             --CCCHHH-HHHHHHHHHHHHHHHhcchhc
Confidence              999999 999999999999988877654

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=100.00  E-value=8.7e-87  Score=740.44  Aligned_cols=482  Identities=22%  Similarity=0.371  Sum_probs=414.4

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~--~I~aIgis  130 (621)
                      |+|+||||+|||++|++|||.+|++++..+.+++... .+|++||||++||+++++++++++++.+..+.  +|++||+|
T Consensus         1 ~~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis   80 (504)
T PTZ00294          1 MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGIT   80 (504)
T ss_pred             CcEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEee
Confidence            3599999999999999999999999999999998655 78999999999999999999999988765555  89999999


Q ss_pred             CC-CceEEecC-CCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC---hhHHhhhCCCCCCCChHHHHHHHHHhcch
Q 007010          131 AT-CSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQE  205 (621)
Q Consensus       131 ~~-~~~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe  205 (621)
                      +| +++|+||+ +|+||         +|+|+|+|.|+.++++++.+..   +.++++||+++++.++++||+|+++|+|+
T Consensus        81 ~q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~  151 (504)
T PTZ00294         81 NQRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPA  151 (504)
T ss_pred             cCcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHH
Confidence            98 99999987 59999         8999999999999999998764   34668999999999999999999999999


Q ss_pred             hHHhhcc----eecchhHHhhhhcc--ccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccc
Q 007010          206 SWSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDG  279 (621)
Q Consensus       206 ~~~~~~~----~l~~~dyl~~~LTG--~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~  279 (621)
                      +|+++++    +++++|||.|+|||  +.. ++.++              +++|++||+++++|++++++.+||+..+  
T Consensus       152 ~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------------As~tgl~D~~~~~W~~~ll~~~gi~~~~--  214 (504)
T PTZ00294        152 VKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------------ASRTFLMNIKTLKWDEELLNKFGIPKET--  214 (504)
T ss_pred             HHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------------hHHhhccCcccCccCHHHHHHhCCCHHH--
Confidence            9996655    99999999999999  654 33332              5678899999999999999999999754  


Q ss_pred             cccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEeccc
Q 007010          280 HHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTS  359 (621)
Q Consensus       280 ~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs  359 (621)
                       ||    +++++++++|. |++   +.+|+++|+||++|++|++|+++|+ |+.++              |++.+++||+
T Consensus       215 -LP----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs  270 (504)
T PTZ00294        215 -LP----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFEK--------------GDAKNTYGTG  270 (504)
T ss_pred             -CC----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCCC--------------CceEEeeccc
Confidence             46    68899999997 984   4677889999999999999999999 66654              5799999999


Q ss_pred             ceecceeC-cccccCC-cccccccccc---CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHH
Q 007010          360 TCHMAVSR-NKLFIPG-VWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLE  434 (621)
Q Consensus       360 ~~~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  434 (621)
                      +++...+. ++..++. .+..+++...   |+.|++++++.++|.+++|+++.+...            ..|++++++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~  338 (504)
T PTZ00294        271 CFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLAR  338 (504)
T ss_pred             eEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHH
Confidence            88655443 3444432 2222222221   448999999999999999999986411            12556666654


Q ss_pred             hhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 007010          435 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH  513 (621)
Q Consensus       435 ~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~  513 (621)
                      +.          ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|++ .|.
T Consensus       339 ~~----------~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~  405 (504)
T PTZ00294        339 SV----------KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHI---VRAALEAIALQTNDVIESMEKDAGI  405 (504)
T ss_pred             hC----------CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            42          3788999999999999999999999999999999999995   559999999999999999987 477


Q ss_pred             CcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhc-CCcEEcCCCChhhH
Q 007010          514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA-AGQVIHPSKDPKVK  592 (621)
Q Consensus       514 ~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~-~~~~~~P~~~~~~~  592 (621)
                      ++++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|+|++++. ++.. ..++|+|  +++++
T Consensus       406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P--~~~~~  482 (504)
T PTZ00294        406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSP--QMSAE  482 (504)
T ss_pred             CcceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH-HhccCCCcEECC--CCCHH
Confidence            889999999999999999999999999999999999999999999999999999999875 5544 6789999  99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007010          593 KYHDAKYLIFRELFEQQVSQRS  614 (621)
Q Consensus       593 ~~y~~~y~~y~~l~~~~~~~~~  614 (621)
                      + |+++|++|+++|+++..|-|
T Consensus       483 ~-y~~~~~~~~~~~~~~~~~~~  503 (504)
T PTZ00294        483 E-RKAIYKEWNKAVERSLKWAK  503 (504)
T ss_pred             H-HHHHHHHHHHHHHHHhcccc
Confidence            9 99999999999998877654

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=100.00  E-value=9.7e-86  Score=693.01  Aligned_cols=527  Identities=44%  Similarity=0.762  Sum_probs=466.9

Q ss_pred             CCeEEEEecCccceeeEEEcC-CCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      +.|+||||+||.|.|+++||. +|++++.+.+||++.. .+...||++.++|++++.+++.+++++++++.+|++|||++
T Consensus         2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa   81 (544)
T COG1069           2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA   81 (544)
T ss_pred             ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence            579999999999999999996 5999999999999877 77889999999999999999999999999999999999999


Q ss_pred             CCceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010          132 TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  211 (621)
Q Consensus       132 ~~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  211 (621)
                      +|++|++|++|+||...++..+..++|+|+|+|+.+++++++...++++.+.|..++|.+-.|||+|+++|.|++|+|+.
T Consensus        82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~  161 (544)
T COG1069          82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAA  161 (544)
T ss_pred             eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhh
Confidence            99999999999999766665555589999999999999999998888999999999999999999999999999999999


Q ss_pred             ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010          212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  291 (621)
Q Consensus       212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~  291 (621)
                      +|+.+.|||.|+|||....+.|+.+++|+++.              -+.+.|++++++.+|++.... .-.+++.++++.
T Consensus       162 ~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~~--------------~~~~~~~~~~f~~ig~~~l~~-~~~~l~~~i~~~  226 (544)
T COG1069         162 HIFDLADWLTWKLTGSIARSRCTAGCKWNWLE--------------HEGGLWSADFFDKIGLDDLRE-LDSKLPEDIVPA  226 (544)
T ss_pred             hhhhHHHHHHHHhhcchhhccccceeeeeeec--------------cccCCCCHHHHHhcCchhhhc-ccccCCcccccC
Confidence            99999999999999999889999999998752              146779999999999885443 114456689999


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccc
Q 007010          292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF  371 (621)
Q Consensus       292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~  371 (621)
                      |+++|+ +++++|+++||++||.|..|..|.+++.+|+++ ..|              +.+..+.|||+|++..++++.+
T Consensus       227 g~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~-~~~--------------~~l~~I~GTStC~m~~s~~~~~  290 (544)
T COG1069         227 GEPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGG-AQP--------------GSLAMIAGTSTCHMLLSEKPRF  290 (544)
T ss_pred             Cccccc-cCHHHHHHhCCCCCcEEeccceecccccccccc-CCC--------------CeEEEEeccceEEEEecCCcee
Confidence            999996 999999999999999999999999999999843 333              5799999999999999999999


Q ss_pred             cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCC
Q 007010          372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED  451 (621)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g  451 (621)
                      .+++|++++....||.|++||+++.+|..++||.+.+....+........+...|+.+++.++.+......  ++++.++
T Consensus       291 v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~  368 (544)
T COG1069         291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASG  368 (544)
T ss_pred             cCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCC
Confidence            99999999888899999999999999999999999863322111111112344566666555544322111  3478999


Q ss_pred             eEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH
Q 007010          452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL  531 (621)
Q Consensus       452 l~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~  531 (621)
                      ++|||+|+|+|+|+-||+++|+|+|++++|++++++.+|||.+|+++|..|+++|.+++.|+++++|+++||..||++||
T Consensus       369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llm  448 (544)
T COG1069         369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLM  448 (544)
T ss_pred             cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 007010          532 QQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP-KVKKYHDAKYLIFRELFEQQV  610 (621)
Q Consensus       532 Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~-~~~~~y~~~y~~y~~l~~~~~  610 (621)
                      |+.||++|+||+++..+++.++|+||++++|.|.|+|+..|.++|....+.+.|  ++ +.+..|+++|++|++++....
T Consensus       449 ql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~--~~~~~~~~y~~lyr~y~~l~~~~~  526 (544)
T COG1069         449 QLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLP--PPPERAARYERLYRRYLQLHDDAE  526 (544)
T ss_pred             HHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecC--ChHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999887766666  55 999999999999999998877


Q ss_pred             HHHHH
Q 007010          611 SQRSI  615 (621)
Q Consensus       611 ~~~~~  615 (621)
                      ...++
T Consensus       527 ~~~~~  531 (544)
T COG1069         527 KHYAR  531 (544)
T ss_pred             hhhhh
Confidence            74443

>TIGR01311 glycerol_kin glycerol kinase

Probab=100.00  E-value=7.5e-85  Score=723.43  Aligned_cols=474  Identities=23%  Similarity=0.383  Sum_probs=412.2

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (621)
                      +|+||||+|||++|+++||.+|++++..+.+++... .+|+.|||+++||+.+++++++++++.+..+++|.+||+|+| 
T Consensus         1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~   80 (493)
T TIGR01311         1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR   80 (493)
T ss_pred             CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence            489999999999999999999999999999998654 889999999999999999999999988777789999999998 


Q ss_pred             CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                      +++|+||++ |+||         +|+|+|+|+|+.++++++++..  ++++++||.++++.++++||+|+++|+||+|++
T Consensus        81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~  151 (493)
T TIGR01311        81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA  151 (493)
T ss_pred             ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence            999999976 9999         8999999999999999998764  578999999999999999999999999999998


Q ss_pred             hcc----eecchhHHhhhhcc--ccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       210 ~~~----~l~~~dyl~~~LTG--~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      +++    |++++|||.|+|||  +.. ++.++              +++|++||+++++|++++++.+||++.+   || 
T Consensus       152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~~l~~~gi~~~~---lP-  212 (493)
T TIGR01311       152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------------ASRTMLFNIHTLDWDDELLELFGIPREI---LP-  212 (493)
T ss_pred             hhcCCeEEECHhHhhhhhccCCceEE-eccch--------------hhhhhcccccccccCHHHHHHcCCCHHH---CC-
Confidence            764    88999999999999  653 34443              4577899999999999999999999753   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. |+++     |+++||||++|++|++|+++|+ |..++              +++++++||+.++.
T Consensus       213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~~~~  268 (493)
T TIGR01311       213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFKP--------------GQAKNTYGTGCFLL  268 (493)
T ss_pred             ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCCC--------------CceEEeecccceEe
Confidence               78899999997 9886     7779999999999999999999 66655              58999999998865


Q ss_pred             ceeC-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhh
Q 007010          364 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH  438 (621)
Q Consensus       364 ~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  438 (621)
                      ..+. .+..++ +....++ +..++   .|+.++++.++|.+++|+++.++..            ..|+++++++++.  
T Consensus       269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~~--  333 (493)
T TIGR01311       269 MNTGEKPVISKHGLLTTVA-YQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARSV--  333 (493)
T ss_pred             eecCCccccCCCCceEEEE-EecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhcC--
Confidence            5443 333333 2222222 22233   4899999999999999999987521            1255565555431  


Q ss_pred             hcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCE
Q 007010          439 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT  517 (621)
Q Consensus       439 ~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~  517 (621)
                              ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|++. |.++++
T Consensus       334 --------~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~  402 (493)
T TIGR01311       334 --------EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVEITK  402 (493)
T ss_pred             --------CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence                    3788999999999999999999999999999999999985   5699999999999999999874 778899


Q ss_pred             EEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHH
Q 007010          518 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA  597 (621)
Q Consensus       518 I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~  597 (621)
                      |+++||++||++|+||+|||+|+||++++..|++++|||++|++++|.|+|++++ +++++..++|+|  ++++++ |++
T Consensus       403 i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P--~~~~~~-y~~  478 (493)
T TIGR01311       403 LRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEP--EMDEEE-REA  478 (493)
T ss_pred             EEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECC--CCCHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999986 788888899999  888887 999


Q ss_pred             HHHHHHHHHHHHH
Q 007010          598 KYLIFRELFEQQV  610 (621)
Q Consensus       598 ~y~~y~~l~~~~~  610 (621)
                      +|++|+++|+++.
T Consensus       479 ~~~~~~~~~~~~~  491 (493)
T TIGR01311       479 RYAGWKEAVKRSL  491 (493)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999765

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01312 XylB D-xylulose kinase

Probab=100.00  E-value=7.5e-84  Score=715.17  Aligned_cols=476  Identities=28%  Similarity=0.441  Sum_probs=425.7

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-Cce
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL  135 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~  135 (621)
                      ||||+|||++|++++|.+|+++.+.+.+++... .+|+.|||+++||+.+++++++++++.+.++.+|.+||+++| +|+
T Consensus         1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~   80 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL   80 (481)
T ss_pred             CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence            699999999999999999999999999998654 899999999999999999999999988777789999999998 999


Q ss_pred             EEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcce
Q 007010          136 VAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  213 (621)
Q Consensus       136 v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  213 (621)
                      |+||++|+|+         .|+++|+|.|+.++++++.+..  ..+++.+|+...+.++++||+|+++|+||+|+++.+|
T Consensus        81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~  151 (481)
T TIGR01312        81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV  151 (481)
T ss_pred             EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence            9999999999         7899999999999888887764  5688999999999999999999999999999999999


Q ss_pred             ecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007010          214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  293 (621)
Q Consensus       214 l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~  293 (621)
                      ++++|||.|+|||+.. ++.+              ++++|++||+++++|++++|+.+|||+.+   ||    +++++++
T Consensus       152 ~~~~~yi~~~LtG~~~-~d~t--------------~as~tgl~d~~~~~W~~~~l~~~gi~~~~---Lp----~iv~~~~  209 (481)
T TIGR01312       152 MLPKDYLRYRLTGEYV-TEYS--------------DASGTGWFDVAKRAWSKELLDALDLPESQ---LP----ELIESSE  209 (481)
T ss_pred             eCchHHHhhhhcCCee-eeHH--------------HhhcccccccCCCCCCHHHHHHhCCCHHH---CC----CccCCCC
Confidence            9999999999999864 2333              25678999999999999999999999754   47    7889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccC
Q 007010          294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  373 (621)
Q Consensus       294 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~  373 (621)
                      ++|+ +++++|+++||++|+||++|++|++|+++|+ |..++              +++++++|||+++..+++++..++
T Consensus       210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~~~  273 (481)
T TIGR01312       210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVDP--------------GDAMMSLGTSGVVYAVTDKPLPDP  273 (481)
T ss_pred             eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence            9997 9999999999999999999999999999999 66654              589999999999888887766554


Q ss_pred             CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeE
Q 007010          374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH  453 (621)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~  453 (621)
                      .......++..|+.|+.+++..++|.+++|+++.+..             ..|+.|++++++.         |+++++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~~---------~~~~~~~~  331 (481)
T TIGR01312       274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQS---------PPGAEGVT  331 (481)
T ss_pred             ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhcC---------CCCCCCeE
Confidence            3222223445678899999999999999999987631             1367777777653         35789999


Q ss_pred             EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHH
Q 007010          454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ  532 (621)
Q Consensus       454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Q  532 (621)
                      |+|||.|+|+|+||++++|+|+|++.+|+++|+   +||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus       332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l---~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q  408 (481)
T TIGR01312       332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRADL---TRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQ  408 (481)
T ss_pred             EecccccCCCCCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHH
Confidence            999999999999999999999999999999985   5699999999999999999885 578899999999999999999


Q ss_pred             HHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007010          533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE  607 (621)
Q Consensus       533 i~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~  607 (621)
                      |+||++|+||++++.+|++++|||++|++++|.|++++++.+.+.+..++|+|  ++++++.|+++|++|+++|+
T Consensus       409 ~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~~~~~~~~~~  481 (481)
T TIGR01312       409 MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--IAENVEAYEELYERYKKLYQ  481 (481)
T ss_pred             HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCCCceECC--CHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988888888899999  99999999999999999873

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=100.00  E-value=4.7e-84  Score=671.02  Aligned_cols=483  Identities=23%  Similarity=0.373  Sum_probs=409.4

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeec-cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~-~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+++||.||||+|+++||.+|++++..+.+++ +++.|||+||||.++|+.+..++++++.++++.+.+|.+||||.|
T Consensus         4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ   83 (499)
T COG0554           4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ   83 (499)
T ss_pred             ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence            4799999999999999999999999999999995 456999999999999999999999999999999999999999999


Q ss_pred             -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                       +++|+||++ |+|+         .|+|.|+|+|+++.|++|++..  +.+.++||..++|+|+..|+.|+.+|.|.+.+
T Consensus        84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~  154 (499)
T COG0554          84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE  154 (499)
T ss_pred             ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence             999999997 9999         8999999999999999999884  67888999999999999999999999998888


Q ss_pred             hh----cceecchhHHhhhhccccc-cccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          209 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       209 ~~----~~~l~~~dyl~~~LTG~~~-~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      |+    ..|.++++||.|+|||... .+|+|+              ||+|+|||+++.+||+++|+.||||+.++   | 
T Consensus       155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sN--------------ASRT~L~ni~~l~WD~elL~il~Ip~~~L---P-  216 (499)
T COG0554         155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYSN--------------ASRTMLFNIHSLEWDDELLELLGIPRSML---P-  216 (499)
T ss_pred             HhhcCCeEEecchhhheeeccCCceeccccch--------------hHHHhcccccccCCCHHHHHHhCCChHhC---c-
Confidence            77    4699999999999999653 456654              67999999999999999999999998754   7 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +|.++.++.|. ...     -.+...+||..-.||||||++|. +..+||   ..|++|||+.+ +.+++|+-.+  
T Consensus       217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq-~c~~pG---~~K~TYGTG~F-~l~ntG~~~~--  280 (499)
T COG0554         217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQ-GCFEPG---MAKNTYGTGCF-LLMNTGEKPV--  280 (499)
T ss_pred             ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhc-ccCCcC---cccccccccee-eeeccCCccc--
Confidence               56677788885 322     23446799999999999999998 567887   88888888887 5567776422  


Q ss_pred             ceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC
Q 007010          364 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP  443 (621)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p  443 (621)
                       .++...+..-.|.    ......|.+||.+..+|++++||+|.+.--            +...+.+.++.++       
T Consensus       281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~i------------~~a~~~e~~A~~~-------  336 (499)
T COG0554         281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGLI------------DDASDSEELAESV-------  336 (499)
T ss_pred             -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCcc------------CchhHHHHHHhcc-------
Confidence             1122121111221    111346999999999999999999975421            2223344444432       


Q ss_pred             CccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007010          444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG  522 (621)
Q Consensus       444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~G  522 (621)
                         ..++||+|.|.|.|.++||||+++||.|+||+..++++|++|   |++|+|||+.+++++.|++ .+..++++++.|
T Consensus       337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~R---A~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG  410 (499)
T COG0554         337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG  410 (499)
T ss_pred             ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence               257899999999999999999999999999999999999765   9999999999999999987 566899999999


Q ss_pred             CCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHH
Q 007010          523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF  602 (621)
Q Consensus       523 Gga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y  602 (621)
                      |.++|+++||+.||++|+||+++...|.+|+|||++|+.++|+|+|++|.. .....+++|+|.++.+.   -+++|+.|
T Consensus       411 G~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~~~~---r~~~y~~W  486 (499)
T COG0554         411 GASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMDEEE---REELYAGW  486 (499)
T ss_pred             ccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCCHHH---HHHHHHHH
Confidence            999999999999999999999999999999999999999999999998854 45567899999776544   36789999


Q ss_pred             HHHHHHHHHHH
Q 007010          603 RELFEQQVSQR  613 (621)
Q Consensus       603 ~~l~~~~~~~~  613 (621)
                      ++..++-+.++
T Consensus       487 ~~AV~rs~~~~  497 (499)
T COG0554         487 KKAVKRSLGWR  497 (499)
T ss_pred             HHHHHHHhccc
Confidence            98877665543

>PRK10331 L-fuculokinase; Provisional

Probab=100.00  E-value=9.1e-83  Score=702.77  Aligned_cols=458  Identities=21%  Similarity=0.254  Sum_probs=394.0

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeecc--cc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--WK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~--~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      +|+||||+|||++|+++||.+|++++..+.+++.  .. .+|++||||++||+++++++++++++.  ...+|.+|++|+
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~   79 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT   79 (470)
T ss_pred             ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence            4899999999999999999999999999998763  23 789999999999999999999999864  346799999999


Q ss_pred             C-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       132 ~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                      | +++++||++|+||         +|+|+|+|+|+.++++++++..  +.++++||+++.+.++++||+|+++|+||+|+
T Consensus        80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~  150 (470)
T PRK10331         80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE  150 (470)
T ss_pred             cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence            8 9999999999999         8999999999999999998764  57899999999999999999999999999999


Q ss_pred             hhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCccc
Q 007010          209 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV  288 (621)
Q Consensus       209 ~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v  288 (621)
                      ++++|++++|||.|+|||+.. ++.|+              ++.|++||+++++|++++++.+||++.+   ||    ++
T Consensus       151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~i  208 (470)
T PRK10331        151 QAHAWLFISSLINHRLTGEFT-TDITM--------------AGTSQMLDIQQRDFSPEILQATGLSRRL---FP----RL  208 (470)
T ss_pred             HhhhhcCHHHHHHHhhcCccc-cchhh--------------ccceeeeecccCCCCHHHHHHcCCCHHH---CC----Cc
Confidence            999999999999999999875 34433              5577899999999999999999999754   46    78


Q ss_pred             ccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCc
Q 007010          289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN  368 (621)
Q Consensus       289 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~  368 (621)
                      +++++++|+ |++++|+++||++|+||++|++|++|+++|+ |.. +              +++++++||+.++..++++
T Consensus       209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GT~~~~~~~~~~  271 (470)
T PRK10331        209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GAG-Q--------------NQPVLSSGTWEILMVRSAQ  271 (470)
T ss_pred             ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CCC-C--------------CCEEEecchhhhheeecCC
Confidence            899999997 9999999999999999999999999999998 653 3              4789999999988777776


Q ss_pred             ccccCC--ccccc-cccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010          369 KLFIPG--VWGPF-WSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV  445 (621)
Q Consensus       369 ~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~  445 (621)
                      +..+..  ..... .....++.|..++.... |.+++|++++|+.           +...|++|++++++.         
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~W~~~~~~~-----------~~~~y~~l~~~a~~~---------  330 (470)
T PRK10331        272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SGVLEWVRKLFWT-----------AETPYQTMIEEARAI---------  330 (470)
T ss_pred             CcccccccccccceeccccCceeeechhhHH-HHHHHHHHHHhcc-----------cCchHHHHHHHHhcC---------
Confidence            554321  00111 11233556655544444 4489999998742           124688888877653         


Q ss_pred             cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010          446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  524 (621)
Q Consensus       446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg  524 (621)
                      |++++|++|+|+|.|+|        ||+|+|++.+|+++|+   +||++|||||.+|++++.|++. +.++++|+++||+
T Consensus       331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg  399 (470)
T PRK10331        331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG  399 (470)
T ss_pred             CCCCCceEecccccccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence            36889999999999987        9999999999999995   5699999999999999999886 4578999999999


Q ss_pred             CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHH
Q 007010          525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA  597 (621)
Q Consensus       525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~  597 (621)
                      ++|++|+||+|||||+||+++...|++++|||++|++++|.|+|++++.+.+....++|+|  + .+++.|++
T Consensus       400 a~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~~~~~~P--~-~~~~~y~~  469 (470)
T PRK10331        400 SRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQYRYFYP--Q-TEPEFIEE  469 (470)
T ss_pred             ccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhcceeECC--C-ccHhhhhc
Confidence            9999999999999999999999999999999999999999999999988888877789999  7 55777764

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-82  Score=701.94  Aligned_cols=492  Identities=29%  Similarity=0.444  Sum_probs=427.0

Q ss_pred             CCCCeEEEEecCccceeeEEEcCC-CCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        52 m~~~~~lgIDiGTtsiKa~l~d~~-g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      |+++|+||||+|||++|++++|.+ |++++..+.+++..+ .+||.||||++||+++++++++++++..++..+|.+|+|
T Consensus         1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i   80 (502)
T COG1070           1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI   80 (502)
T ss_pred             CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence            456899999999999999999998 899999999998774 999999999999999999999999988778899999999


Q ss_pred             cCC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchh
Q 007010          130 AAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES  206 (621)
Q Consensus       130 s~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~  206 (621)
                      |+| +++|++|++|+||         +|+|+|+|.|+.++++++.+..  ++.+..||+++.+.++++||+|+++|+||+
T Consensus        81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~  151 (502)
T COG1070          81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL  151 (502)
T ss_pred             eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence            998 9999999999999         8999999999999999999875  467778999999999999999999999999


Q ss_pred             HHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCc-cccccccccC
Q 007010          207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIG  285 (621)
Q Consensus       207 ~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~-~~~~~lp~i~  285 (621)
                      |+|+.+|++++|||.|+|||+.. ++.|+              +++|++||+++++|+.++|+.+|+++ .+   ||   
T Consensus       152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~--------------as~t~l~d~~~~~w~~~~l~~~gl~~~~~---lp---  210 (502)
T COG1070         152 FAKAAKILLIKDYLRYRLTGEFA-TEISD--------------ASGTGLLDIRTRKWDWELLAALGLPERDL---LP---  210 (502)
T ss_pred             HHhhhheechHHHHHHHHhCCcc-ccccc--------------ccccccccccccccCHHHHHHcCCChHHh---CC---
Confidence            99999999999999999999975 34443              45788999999999999999999995 43   47   


Q ss_pred             cccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecce
Q 007010          286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV  365 (621)
Q Consensus       286 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~  365 (621)
                       +++++++++|. |++++|+++||++++||++|+||.+++++|+ |+.++              +++..++||+.++...
T Consensus       211 -~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~--------------g~~~~~~gts~~~~~~  273 (502)
T COG1070         211 -PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDP--------------GDVSSSTGTSGVVRAA  273 (502)
T ss_pred             -CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCC--------------CcEEEEeccccEEeee
Confidence             78999999997 9999999999999999999999999999999 78865              4688999999998888


Q ss_pred             eCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010          366 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV  445 (621)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~  445 (621)
                      ++++..++......+++..++.|+.++..+++|.+++|+++.+...+            .+.++...+...+       .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~------------~~~~~~~~~~~~~-------~  334 (502)
T COG1070         274 TDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE------------SYPELLEEALAVP-------A  334 (502)
T ss_pred             ccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc------------CcHHHHHHHHhcc-------C
Confidence            88755554332222344557888888999999999999999875321            1222222222211       2


Q ss_pred             cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010          446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  524 (621)
Q Consensus       446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg  524 (621)
                      ++++.++.|+|||.|||.|++++.+|+.|+|++..|++.++.   ||++||++|.++..++.|++. +.++++|+++||+
T Consensus       335 ~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~---ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg  411 (502)
T COG1070         335 PAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLA---RAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG  411 (502)
T ss_pred             CCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc
Confidence            367899999999999999999999999999999999998864   599999999999999999997 7889999999999


Q ss_pred             CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccC-CHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHH
Q 007010          525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR  603 (621)
Q Consensus       525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~-s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~  603 (621)
                      |||++|+||+||++|+||.++...|++++|+|++++.+++.+. +.+++.+.+.. .+++.|  |++.++.|+++|++|+
T Consensus       412 ars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--~~~~~~~y~~~~~~~~  488 (502)
T COG1070         412 ARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD-ARRIIP--DPERAAAYQELYERYR  488 (502)
T ss_pred             ccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc-ccccCC--ChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888876554 44554444443 788999  9999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 007010          604 ELFEQQVSQRSI  615 (621)
Q Consensus       604 ~l~~~~~~~~~~  615 (621)
                      ++|++++++.+.
T Consensus       489 ~~y~~~~~~~~~  500 (502)
T COG1070         489 ALYQALLALYRQ  500 (502)
T ss_pred             HHHHHHHHHHhh
Confidence            999999886543

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=100.00  E-value=6.8e-80  Score=678.66  Aligned_cols=452  Identities=21%  Similarity=0.290  Sum_probs=386.8

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeec--cc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ--IW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~--~~-~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++||||+|||++|+++||.+|++++..+.+++  .. +.+|+.||||++||+++++++++++++  ..+.+|++|++|+|
T Consensus         2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~   79 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF   79 (465)
T ss_pred             eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence            78999999999999999999999999998876  33 378999999999999999999999865  34567999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                       +++|+||++|+||         +|+|+|+|+|+.++++++.+..  ++++++||+++.+.++++||+|+++|+||+|+|
T Consensus        80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~  150 (465)
T TIGR02628        80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER  150 (465)
T ss_pred             ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence             9999999999999         8999999999999999998764  578999999999999999999999999999999


Q ss_pred             hcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccc
Q 007010          210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  289 (621)
Q Consensus       210 ~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~  289 (621)
                      +++|++++|||.|+|||+.. ++.++              +|.|++||+++++|++++|+.+||++.+   ||    +++
T Consensus       151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~w~~ell~~~gi~~~~---lP----~l~  208 (465)
T TIGR02628       151 MHKFVFISSMITHRLTGEFT-TDITM--------------AGTSMMTDLTQRNWSPQILQALGLSRRL---FP----PLV  208 (465)
T ss_pred             HHHhhCcHHHHHHHHhCCcc-cchhh--------------hhcceeeecCcCCCCHHHHHHcCCCHHH---CC----Ccc
Confidence            99999999999999999875 33332              5678899999999999999999999754   46    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcc
Q 007010          290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  369 (621)
Q Consensus       290 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~  369 (621)
                      ++++++|+ |++++|+++||++||||++|++|++|+++|+ |. .+              +++++++|||+++...++++
T Consensus       209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~-~~--------------g~~~~~~GTs~~~~~~~~~~  271 (465)
T TIGR02628       209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GA-EQ--------------NQPVLSSGTWEILMARSQQV  271 (465)
T ss_pred             cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CC-CC--------------CcEEEeccchhhheeccCcC
Confidence            89999997 9999999999999999999999999999998 65 44              47899999999887777766


Q ss_pred             cccCCcc-ccccc--cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCcc
Q 007010          370 LFIPGVW-GPFWS--AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  446 (621)
Q Consensus       370 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  446 (621)
                      ..++... ..+.+  +..++.|...+...++| +++|+++.+...+       ..+.+.|++|++.+++.         |
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~-------~~~~~~~~~l~~~a~~~---------~  334 (465)
T TIGR02628       272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE-------TPSDHYYQMMIEEARLI---------A  334 (465)
T ss_pred             CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh-------hccccHHHHHHHHHHhC---------C
Confidence            6554321 11111  12356676555455555 8999999764211       01123578888877653         3


Q ss_pred             CCCCCeE-EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010          447 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  524 (621)
Q Consensus       447 ~g~~gl~-flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg  524 (621)
                      ++++|++ |+|++.        +.+||+|+|++.+|++.|+   +||++|||||.+|++++.|++. +.++++|+++||+
T Consensus       335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg  403 (465)
T TIGR02628       335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG  403 (465)
T ss_pred             CCCCcceeecccCC--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence            6888998 888763        5679999999999999985   5699999999999999999886 4688999999999


Q ss_pred             CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcC
Q 007010          525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP  585 (621)
Q Consensus       525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P  585 (621)
                      ++|++|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+.+..++|+|
T Consensus       404 a~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P  464 (465)
T TIGR02628       404 SKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYP  464 (465)
T ss_pred             cCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhccceeeCC
Confidence            9999999999999999999999999999999999999999999999988888877889999

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PLN02669 xylulokinase

Probab=100.00  E-value=2.1e-76  Score=659.99  Aligned_cols=489  Identities=16%  Similarity=0.129  Sum_probs=401.7

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV  119 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~----~~~~g~~eqd~~----------~~~~~~~~~l~~~~~~~~~  119 (621)
                      ++|+||||+|||++|+++||.+|+++++++.+++.    +..+|++||||+          .||++++.+++++. +.+.
T Consensus         7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~   85 (556)
T PLN02669          7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF   85 (556)
T ss_pred             CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence            46999999999999999999999999999999863    225677899998          78899999999987 4566


Q ss_pred             CCCCEEEEEEcCC-CceEEecC-CCCceeecCCCC----------CCcceeEEcCcchHHHHHHHHccC---hhHHhhhC
Q 007010          120 DGEEVKGVGFAAT-CSLVAVDA-DGSPVSVSWNGD----------SRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG  184 (621)
Q Consensus       120 ~~~~I~aIgis~~-~~~v~vD~-~G~pl~~~~~~~----------~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG  184 (621)
                      +.++|++|++|+| |++|+||+ .|+||..+....          +.+|+++|+|.|+.++++++.+..   ++++++||
T Consensus        86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG  165 (556)
T PLN02669         86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG  165 (556)
T ss_pred             ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence            7788999999998 99999999 588874332221          125899999999999999998764   47899999


Q ss_pred             CCCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCC
Q 007010          185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD  264 (621)
Q Consensus       185 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws  264 (621)
                      +++++.|+.+||+|+++|+||+|+++.+|+.++|||.|+|||+...++.|+              +|++++||+++++||
T Consensus       166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sd--------------asg~~l~Di~~~~Ws  231 (556)
T PLN02669        166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETD--------------GAGMNLMDIEKRCWS  231 (556)
T ss_pred             CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchh--------------hhhhhhhccccCCcC
Confidence            999999999999999999999999999999999999999999864345553              456789999999999


Q ss_pred             HHHHHHcCCC-ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhh
Q 007010          265 DEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKEN  343 (621)
Q Consensus       265 ~~ll~~~gi~-~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~  343 (621)
                      +++|+.+++. +.   .||    +++++++++|+ |++++|+++||++||||++|++|++|+++|+ |+.+|        
T Consensus       232 ~~ll~~~~~~l~~---~Lp----~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~~--------  294 (556)
T PLN02669        232 KAALEATAPGLEE---KLG----KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLSTP--------  294 (556)
T ss_pred             HHHHHhhCccHHH---HCc----CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCCC--------
Confidence            9999999543 12   346    67888999997 9999999999999999999999999999999 77665        


Q ss_pred             hhhhccceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCC
Q 007010          344 EEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHV  423 (621)
Q Consensus       344 ~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~  423 (621)
                            +++.+++|||+++.++++++..++.. ..+++...|+.|+.+++..++|.+++|+++.+.             .
T Consensus       295 ------g~~~~slGTs~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~-------------~  354 (556)
T PLN02669        295 ------GDLAISLGTSDTVFGITREPQPSLEG-HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCA-------------D  354 (556)
T ss_pred             ------CeEEEEEcccceEEEecCCCCCCCCc-ceeeCccCCCCeEEEEEecchHHHHHHHHHHhc-------------c
Confidence                  58999999999988888876655432 123333448899999999999999999999763             1


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCC----CCCCCceeEEcCCCC---------CCHHHHHHHH
Q 007010          424 SLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLY  490 (621)
Q Consensus       424 ~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~----~d~~arg~f~Gl~~~---------~~~~~~~~~~  490 (621)
                      +.|+.|++++++.         |++++|++++||+.||+.|+    +++.++|.|+|++.+         |++.|+   +
T Consensus       355 ~~~~~~~~~~~~~---------~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~  422 (556)
T PLN02669        355 GSWDVFNKLLEQT---------PPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---V  422 (556)
T ss_pred             CcHHHHHHHHHhC---------CCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---H
Confidence            3477788877653         36889999899999999996    577788999999988         578885   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCC--
Q 007010          491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSS--  568 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s--  568 (621)
                      ||++||++|++|.+++.|+ .+.++++|+++||+++|+.|+||+|||||+||++++..|++++|||++|+++.  +.+  
T Consensus       423 RAvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~--~~~~~  499 (556)
T PLN02669        423 RAIIEGQFLSMRAHAERFG-MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHGW--LCNEQ  499 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHHH--hhhhh
Confidence            6999999999999999996 35678999999999999999999999999999999999999999999999954  432  


Q ss_pred             -----HHHHHHHhhc---CCcEE--cCCCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 007010          569 -----LIEAMKAMNA---AGQVI--HPSKDP-KVKKYHDAKYLIFRELFEQQVS  611 (621)
Q Consensus       569 -----~~ea~~~~~~---~~~~~--~P~~~~-~~~~~y~~~y~~y~~l~~~~~~  611 (621)
                           +++.......   ....+  +|  .+ +..+.|..+.++|.+|-+.+..
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~  551 (556)
T PLN02669        500 GSFVPISCLYEGKLEATSLSCKLAVKA--GDQELLSQYGLLMKKRMEIEQQLVE  551 (556)
T ss_pred             cccCChhhhcccccccCcccceeeccC--CCccHHHHHHHHHHHHHHHHHHHHH
Confidence                 1111111111   11122  55  33 6777888888888887766543

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=100.00  E-value=4.2e-70  Score=599.50  Aligned_cols=429  Identities=17%  Similarity=0.161  Sum_probs=350.7

Q ss_pred             EEEecCccceeeEEEcCC---CCEE-EEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~---g~vv-~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ||||+|||++|++++|.+   |+++ .+...+++... .+++.||||+.||+++.++++++.+.    ..+|.+||||+|
T Consensus         1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q   76 (454)
T TIGR02627         1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW   76 (454)
T ss_pred             CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence            589999999999999987   5666 56666655443 78899999999999999999998753    346999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                       +++|+||++|+||         +|+|+|+|.|+.++++++.+..  ++++++||+++.+.++++||+|+++|+||+|+|
T Consensus        77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~  147 (454)
T TIGR02627        77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK  147 (454)
T ss_pred             ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence             9999999999999         8999999999999999998764  678999999999999999999999999999999


Q ss_pred             hcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccc
Q 007010          210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  289 (621)
Q Consensus       210 ~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~  289 (621)
                      +++|++++|||.|+|||+.. ++.|+              +|+|++||+++++|++++++.+||++.+   ||    +++
T Consensus       148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----~l~  205 (454)
T TIGR02627       148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------------ATTTQLVNINTDDWDEDLLAYLGVPAAW---FG----RPT  205 (454)
T ss_pred             HHHhCCHHHHHHHheeCCce-eeeeh--------------hhhcccccCCCCCcCHHHHHHcCCCHHH---cC----Ccc
Confidence            99999999999999999875 33332              5678899999999999999999999753   46    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEE-echhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCc
Q 007010          290 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN  368 (621)
Q Consensus       290 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~  368 (621)
                      ++++++|. +.+     +|+ +|+||++ |+||++|+++|+ |..+|              +++++++|||.++...+++
T Consensus       206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~  263 (454)
T TIGR02627       206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQGE--------------NAAYLSSGTWSLMGFESQT  263 (454)
T ss_pred             CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCCC--------------CcEEEEEcHHHHhcccCCC
Confidence            99999996 653     467 7999998 889999999998 66654              5899999999988777776


Q ss_pred             ccccCCcccc-cc-ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCcc
Q 007010          369 KLFIPGVWGP-FW-SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  446 (621)
Q Consensus       369 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  446 (621)
                      +..++..+.. +. ....++.|...+... ++    |+++.+...         .+.+.|+++++.+..      +|   
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~---------~~~~~~~~l~~~a~~------~p---  320 (454)
T TIGR02627       264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRE---------RDINDLPALIEQAQA------LP---  320 (454)
T ss_pred             CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhh---------hccccHHHHHHHhcC------CC---
Confidence            6655432211 11 123356676654443 33    777765321         012345666554432      22   


Q ss_pred             CCCCCeEEccccCCCCCCCCCCC-Ccee------EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEE
Q 007010          447 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL  518 (621)
Q Consensus       447 ~g~~gl~flP~l~Ger~P~~d~~-arg~------f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I  518 (621)
                      +      |.|++.|++.|+||+. +++.      |+|++.+|++.|+   +||++|||||.+|++++.|++. +.++++|
T Consensus       321 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i  391 (454)
T TIGR02627       321 A------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQL  391 (454)
T ss_pred             C------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence            2      3466789999999995 5554      4999999999995   5699999999999999999885 6788999


Q ss_pred             EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHh
Q 007010          519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM  576 (621)
Q Consensus       519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~  576 (621)
                      +++||+++|++|+||+||++|+||.+.. .|++++|||++|++++|.|++++++.+.+
T Consensus       392 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~~~  448 (454)
T TIGR02627       392 HIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQIV  448 (454)
T ss_pred             EEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            9999999999999999999999998765 77999999999999999999998874433

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5e-68  Score=564.64  Aligned_cols=491  Identities=35%  Similarity=0.553  Sum_probs=400.9

Q ss_pred             CCeEEEEecCccceeeEEEc-CCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCC---CCEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDG---EEVKGVG  128 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~---~~I~aIg  128 (621)
                      +++++|||+||||+|++||| .+|+++..++.+++... ++||+||||.++|++++++|+++.+..+..+   ..|.+|+
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig   84 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG   84 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence            58999999999999999999 79999999999987665 8999999999999999999999988765443   3466799


Q ss_pred             EcCC-CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccCh-hH---HhhhCCCCCCCChHHHHHHHHHh
Q 007010          129 FAAT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS-PV---LQYCGGAVSPEMQPPKLLWVKEN  202 (621)
Q Consensus       129 is~~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~-~~---~~~tG~~~~~~~~~~kl~Wl~~~  202 (621)
                      ++.| ++.|+|++. |+|+         .++|.|+|.|+..+++++++... ..   ..++|.+++++|.++||+||++|
T Consensus        85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn  155 (516)
T KOG2517|consen   85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN  155 (516)
T ss_pred             EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence            9998 999999988 9999         89999999999999999998762 22   26899999999999999999999


Q ss_pred             cchh-HHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccc
Q 007010          203 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH  281 (621)
Q Consensus       203 ~pe~-~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~l  281 (621)
                      .|++ +......+..++|+.|++++-.....+         .-.+.+++|++++||..+..|+..+++.+|||..++   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~---------~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~ll---  223 (516)
T KOG2517|consen  156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC---------HCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLL---  223 (516)
T ss_pred             CHHHHHHHHhcccchhhhhhheeecCCcccee---------ccccccccccccccchhhhhhhhhhhhhhCCCcccC---
Confidence            9998 777778777788777777664432111         001234578899999999999999999999998764   


Q ss_pred             cccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccce
Q 007010          282 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC  361 (621)
Q Consensus       282 p~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~  361 (621)
                      |    ++..+++++|. +   .+..+|+.+|+||.++.+|++|+++|.++ .++              ++...++||+..
T Consensus       224 p----~i~s~~e~~g~-~---~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~-~~~--------------g~~~~t~~t~~F  280 (516)
T KOG2517|consen  224 P----DIRSSSEVYGT-T---AAGDLGLLEGTPVSSCLGDQQASMVGQMC-YKP--------------GCAKLTYGTGCF  280 (516)
T ss_pred             C----ccccccccccc-c---cccccccccCcceeechhhHHHHHHhHhh-hcC--------------cceEEeeCCceE
Confidence            6    56778888885 3   23467799999999999999999999854 333              467777888776


Q ss_pred             ecceeCccc--ccCCcccccccc-cc--CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhh
Q 007010          362 HMAVSRNKL--FIPGVWGPFWSA-MV--PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM  436 (621)
Q Consensus       362 ~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  436 (621)
                      +..++....  ..++.|...... ..  +-.|++++....+|..++|+++.+...+.            ...+++++.+.
T Consensus       281 l~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~~~  348 (516)
T KOG2517|consen  281 LLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAAEV  348 (516)
T ss_pred             EeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHHhh
Confidence            655554321  122332211110 11  11377888888889999999987642211            12233444332


Q ss_pred             hhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q 007010          437 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKI  515 (621)
Q Consensus       437 ~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g-~~~  515 (621)
                                ..+.+++|+|.|.|.|+|+|||++||+|+|++.+++.+|+++   |++|+|||++|++++.|++.+ .++
T Consensus       349 ----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~~i  415 (516)
T KOG2517|consen  349 ----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGHPI  415 (516)
T ss_pred             ----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      258899999999999999999999999999999999999876   999999999999999998866 699


Q ss_pred             CEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccc--cCCHHHHHHHhhcCCcEEcCCCChhhHH
Q 007010          516 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKK  593 (621)
Q Consensus       516 ~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~--~~s~~ea~~~~~~~~~~~~P~~~~~~~~  593 (621)
                      +.++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|.  |++.+++.  +....++|.|+.+.   +
T Consensus       416 ~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~---~  490 (516)
T KOG2517|consen  416 STLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD---K  490 (516)
T ss_pred             ceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc---H
Confidence            99999999999999999999999999999999999999999999999999  66666643  56788999995443   7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010          594 YHDAKYLIFRELFEQQVSQRSIMAQ  618 (621)
Q Consensus       594 ~y~~~y~~y~~l~~~~~~~~~~~~~  618 (621)
                      .++.+|++|++++++++.|++++++
T Consensus       491 ~~~~ky~~w~~ave~~~~~~~~~~~  515 (516)
T KOG2517|consen  491 LLDKKYQIWLKAVERQLGYRRIVDE  515 (516)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhhccC
Confidence            8899999999999999999999875

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=100.00  E-value=1.2e-68  Score=588.71  Aligned_cols=444  Identities=15%  Similarity=0.159  Sum_probs=361.8

Q ss_pred             EEEcCCCC-EEEEEEeeeccc--cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CceEEecCCCCce
Q 007010           70 GLFDESGK-LLGSASSPIQIW--KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPV  145 (621)
Q Consensus        70 ~l~d~~g~-vv~~~~~~~~~~--~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~v~vD~~G~pl  145 (621)
                      +-+|.+|+ +.-++.++++..  ..+++.+|||+.||+++.++++++...    ..+|.+||||+| +++|+||++|+||
T Consensus         3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL   78 (471)
T PRK10640          3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV   78 (471)
T ss_pred             eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence            34665444 444445555433  378899999999999999999888652    467999999998 9999999999999


Q ss_pred             eecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhh
Q 007010          146 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR  223 (621)
Q Consensus       146 ~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~  223 (621)
                               +|+|+|+|.|+.++++++.+..  +++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+
T Consensus        79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~  149 (471)
T PRK10640         79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR  149 (471)
T ss_pred             ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence                     8999999999999999998764  67899999999999999999999999999999999999999999999


Q ss_pred             hccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCCccCCCccHHH
Q 007010          224 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA  303 (621)
Q Consensus       224 LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~  303 (621)
                      |||+.. ++.|.              +|+|++||+++++||+++++.+||+..+   ||    +++++++++|. ++++ 
T Consensus       150 LTG~~~-~d~s~--------------as~t~l~d~~~~~W~~ell~~~Gi~~~~---LP----~lv~~~~~~G~-v~~~-  205 (471)
T PRK10640        150 LTGKMN-WEYTN--------------ATTTQLVNINSDDWDESLLAWSGAPKAW---FG----RPTHPGNVIGH-WICP-  205 (471)
T ss_pred             HhCCcc-eeecH--------------hhhccccCCCcCCcCHHHHHHcCCCHHH---cC----CCcCCCcccee-eecc-
Confidence            999975 33332              5678899999999999999999999754   46    68899999996 8765 


Q ss_pred             HHHcCCCCCCcEEE-echhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccCCc-cccccc
Q 007010          304 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS  381 (621)
Q Consensus       304 a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~-~~~~~~  381 (621)
                         +|  .|+||++ |+||++|+++|+ |...+              +++++++|||+++..+++++..++.. ...+..
T Consensus       206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~  265 (471)
T PRK10640        206 ---QG--NEIPVVAVASHDTASAVIAS-PLNDS--------------DAAYLSSGTWSLMGFESQTPFTNDTALAANITN  265 (471)
T ss_pred             ---cC--CCCCEEEeCCCcHHHHhhcc-CCCCC--------------CeEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence               35  6899998 689999999998 66654              58999999999988888876654422 111111


Q ss_pred             -cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCC
Q 007010          382 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG  460 (621)
Q Consensus       382 -~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G  460 (621)
                       ...++.|.++..+.  |   +|+++++....         +...|+++.+++++.          ++++|++ +|  .|
T Consensus       266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a~~~----------~g~~gli-~p--~g  318 (471)
T PRK10640        266 EGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QITDLPALIAATAAL----------PACRFLI-NP--ND  318 (471)
T ss_pred             cCCCCceEEEecchh--H---HHHHHHHHHHh---------ccCCHHHHHHHHHhC----------CCCCcee-CC--Cc
Confidence             23466776655332  3   89999874321         123466776655442          2678886 68  69


Q ss_pred             CCCCCCCC-CCceeEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHH
Q 007010          461 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ  532 (621)
Q Consensus       461 er~P~~d~-~arg~f~Gl~~~~------~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Q  532 (621)
                      +|.  ||+ ++||+|+|++.+|      ++.|+   +||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus       319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~l---~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Q  393 (471)
T PRK10640        319 DRF--INPPSMCSEIQAACRETAQPVPESDAEL---ARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQ  393 (471)
T ss_pred             ccc--cCchhhHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHH
Confidence            994  675 8999998777776      88885   5699999999999999999874 677899999999999999999


Q ss_pred             HHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhc---CCcEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007010          533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVIHPSKDPKVKKYHDAKYLIFRELFEQ  608 (621)
Q Consensus       533 i~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~---~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~  608 (621)
                      |+|||+|+||.+... |++++|||++|++++|.|++++++ +.++.   ..++|+|  +++  ..|++.|..|+++|+.
T Consensus       394 i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P--~~~--~~~~~~~~~~~~~~~~  466 (471)
T PRK10640        394 LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTP--NPD--SEIARHVAQFQSLRQT  466 (471)
T ss_pred             HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcC--CCh--HHHHHHHHHHHHHhcc
Confidence            999999999988664 899999999999999999999876 56665   5789999  665  6789999999999864

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=100.00  E-value=2.9e-49  Score=400.09  Aligned_cols=241  Identities=39%  Similarity=0.683  Sum_probs=217.4

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (621)
                      |+||||+|||++|++++|++|+++...+.+++... .+|+.||||++||+++++++++++++.+.++.+|++|++|+| +
T Consensus         1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~   80 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH   80 (245)
T ss_dssp             EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred             CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence            79999999999999999999999999999998766 789999999999999999999999998888899999999998 9


Q ss_pred             ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010          134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  211 (621)
Q Consensus       134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  211 (621)
                      ++|+||++|+|+         +|+|+|+|+|+.++++++++..  +++++.||.++++.++++||+|+++|+||+|++++
T Consensus        81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  151 (245)
T PF00370_consen   81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA  151 (245)
T ss_dssp             EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred             Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence            999999999999         8999999999999999998865  68899999999999999999999999999999999


Q ss_pred             ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010          212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  291 (621)
Q Consensus       212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~  291 (621)
                      +|++++|||.|+|||+... +.|              +++.|++||+++++|++++++.+||+..+   ||    +++++
T Consensus       152 ~~~~~~dyl~~~LtG~~~~-d~s--------------~as~tgl~d~~~~~w~~~~l~~~gi~~~~---lP----~i~~~  209 (245)
T PF00370_consen  152 KFLTLSDYLAYKLTGRAAT-DYS--------------NASRTGLYDIRTGQWDEELLEALGIPEEL---LP----EIVPP  209 (245)
T ss_dssp             EEEEHHHHHHHHHHSC-EE-EHH--------------HHCTSSSEETTTTEE-HHHHHHTTSGGGG---SC----EEE-T
T ss_pred             hcccHHHHHHhhccccccc-ccc--------------chhccccccccccccCHHHHHhhCCChhh---CC----cEecC
Confidence            9999999999999998752 333              25678899999999999999999999864   47    78899


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcc
Q 007010          292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG  328 (621)
Q Consensus       292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg  328 (621)
                      |+++|+ +++++|+++||++|+||++|++|++|+++|
T Consensus       210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG  245 (245)
T PF00370_consen  210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG  245 (245)
T ss_dssp             TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred             CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence            999997 999999999999999999999999999986

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-44  Score=368.87  Aligned_cols=490  Identities=17%  Similarity=0.143  Sum_probs=365.0

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecc----cc-CC-------CccccCHH-HHHHHHHHHHHHHHHHcCCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WK-EG-------DCIEQSST-DIWHAICAAVDSACSLANVD  120 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~----~~-~~-------g~~eqd~~-~~~~~~~~~l~~~~~~~~~~  120 (621)
                      ...+||+|++|+.+|++++|.+++|++++...+..    +. ..       |..-..|. +|.+++.-.+.++. +.+.+
T Consensus         8 ~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~-~~~~d   86 (545)
T KOG2531|consen    8 DRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLR-EAGFD   86 (545)
T ss_pred             CceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHH-HcCCC
Confidence            34699999999999999999999999999887742    21 11       12223455 77777776666554 45677


Q ss_pred             CCCEEEEEEcCC-CceEEecCCCCceeecCCC-----------CCCcceeEEcCcchHHHHHHHHccC---hhHHhhhCC
Q 007010          121 GEEVKGVGFAAT-CSLVAVDADGSPVSVSWNG-----------DSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGG  185 (621)
Q Consensus       121 ~~~I~aIgis~~-~~~v~vD~~G~pl~~~~~~-----------~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~  185 (621)
                      ..+|.+|+-++| ||.|+|.+.++-....++.           ........|+|..+..+|+++....   .++.++||.
T Consensus        87 ~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGS  166 (545)
T KOG2531|consen   87 LSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGS  166 (545)
T ss_pred             HHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcc
Confidence            789999999997 9999998775443333331           1234455899999999999998875   688999999


Q ss_pred             CCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCH
Q 007010          186 AVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDD  265 (621)
Q Consensus       186 ~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~  265 (621)
                      +.+..|+.++|+-+.+.+||+|+++.+|-.+++|+...|-|..+..+.|+++              +..|+||++++||.
T Consensus       167 RAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgs--------------GMNL~dIr~k~ws~  232 (545)
T KOG2531|consen  167 RAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGS--------------GMNLLDIRKKKWSK  232 (545)
T ss_pred             hhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceeccccc--------------CchHHHHhhhhhhH
Confidence            9999999999999999999999999999999999999999998765666543              44689999999999


Q ss_pred             HHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhh
Q 007010          266 EFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEE  345 (621)
Q Consensus       266 ~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~  345 (621)
                      ++|+.+.  +.+.   .+++ ..+++-.++|+ |++.+.+++|++++|.|+.-.||.++++.|.  ..++          
T Consensus       233 ~~L~~~a--pdL~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL--~l~~----------  293 (545)
T KOG2531|consen  233 ALLDACA--PDLE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL--PLRP----------  293 (545)
T ss_pred             HHHhhhC--hhHH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc--cccC----------
Confidence            9999985  2222   2333 35566788997 9999999999999999999999999999997  2433          


Q ss_pred             hhccceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCH
Q 007010          346 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSL  425 (621)
Q Consensus       346 ~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~  425 (621)
                          +++.+|+|||..++++++++.+.+.. ..|++.+.++.|+.+-+.-+|+.+=+-+|+..             ...+
T Consensus       294 ----~dl~iSLGTSdTv~m~t~~~~p~~eg-Hvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~-------------~~~s  355 (545)
T KOG2531|consen  294 ----GDLLISLGTSDTVFMVTKEYHPSPEG-HVFCHPTDPNHYMGMLCFKNGSLTRERIRNES-------------ANGS  355 (545)
T ss_pred             ----CceEEEecCcceEEEEcCCCCCCCCc-ceeccCCCccceEEEEEecCChHHHHHHhhcc-------------cCCC
Confidence                58999999999999999988765543 34666677889999999989877655555431             2357


Q ss_pred             HHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCC-------CCCCCceeE---EcCCCCCCHHHHHHHHHHHHH
Q 007010          426 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI-------ADPKSKGII---CGMTLDSSEKQLALLYLATVQ  495 (621)
Q Consensus       426 ~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~-------~d~~arg~f---~Gl~~~~~~~~~~~~~rAvlE  495 (621)
                      |+.+++.+.+.         |+|.+|.+=+-|--+|-.|.       |+.+....-   .++....+|+.-   .||++|
T Consensus       356 Wd~Fne~L~~t---------~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e---~rAlvE  423 (545)
T KOG2531|consen  356 WDKFNEILDST---------PSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEIE---ARALVE  423 (545)
T ss_pred             HHHHHHHhccC---------cCCCCCceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchHH---HHHHHH
Confidence            88899877654         35666653222223555551       111110000   022233345554   469999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccC-C----HH
Q 007010          496 GIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-S----LI  570 (621)
Q Consensus       496 gia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~-s----~~  570 (621)
                      |.++..|...+.|.-...+.++|+++||.++|....|++|||||+||+..+..+++++|+|+-|++|.-... .    +.
T Consensus       424 gQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~  503 (545)
T KOG2531|consen  424 GQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFS  503 (545)
T ss_pred             HhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccce
Confidence            999999988887653234789999999999999999999999999999999999999999999999852211 0    00


Q ss_pred             HHHH--Hh--hcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 007010          571 EAMK--AM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ  609 (621)
Q Consensus       571 ea~~--~~--~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~  609 (621)
                      .-..  ..  .+.+-.-+|  +++..+.|..+.++|.++.+.+
T Consensus       504 ~~~~~~~~~p~~~~L~~~p--~~~~~e~Y~~ll~~~~e~e~~l  544 (545)
T KOG2531|consen  504 NKTNYLSLTPSKLELACEP--DSANWEIYGPLLKRLSELEDTL  544 (545)
T ss_pred             eeccccccCCccceeeecC--CcchHHHHHHHHHHHHHHHHhh
Confidence            0000  00  112334578  7788889999999888877643

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=99.98  E-value=5.3e-32  Score=264.79  Aligned_cols=196  Identities=34%  Similarity=0.557  Sum_probs=158.6

Q ss_pred             EEEEecccceecceeCccccc-CCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010          352 MVLVCGTSTCHMAVSRNKLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  430 (621)
Q Consensus       352 ~~~~~GTs~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (621)
                      +++++|||+++..++++++.+ ++.+.++..+..++.|+++++.+++|.+++|+++.+...+.+...     ...++.++
T Consensus         1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~-----~~~~~~~~   75 (198)
T PF02782_consen    1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDE-----EEIYEDLA   75 (198)
T ss_dssp             EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSST-----THHHHHHH
T ss_pred             CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhh-----hhccchHH
Confidence            358999999999988888743 345554443446788999999999999999999986321111000     00122222


Q ss_pred             HHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007010          431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA  510 (621)
Q Consensus       431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~  510 (621)
                      ...+..        .++++++++|+|+|.|+|+|+||++++|+|+|++.+|++.++   +||++||++|.+|++++.|++
T Consensus        76 ~~~~~~--------~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~~~~~~~~l~~  144 (198)
T PF02782_consen   76 ELEAAA--------SPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFSLRQILEELEE  144 (198)
T ss_dssp             HHHHHH--------TSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhh--------ccCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHHHHHhhhhccc
Confidence            211111        125689999999999999999999999999999999998885   569999999999999999998


Q ss_pred             C-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhc
Q 007010          511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA  563 (621)
Q Consensus       511 ~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~  563 (621)
                      . +.++++|+++||+++|++|+|++||++|+||++++..|++++|||++|++++
T Consensus       145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~  198 (198)
T PF02782_consen  145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV  198 (198)
T ss_dssp             HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred             cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence            7 8999999999999999999999999999999999999999999999999874

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.54  E-value=1.3e-07  Score=95.83  Aligned_cols=71  Identities=23%  Similarity=0.390  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-EEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAI  557 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~  557 (621)
                      ..++++++   +++++++++.+...+..+     +++ .|+++||+++|+.|.+.+++.++.||.+++.++ .+|+|||+
T Consensus       176 g~~~~di~---~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl  247 (248)
T TIGR00241       176 GVKKEDIL---AGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL  247 (248)
T ss_pred             CCCHHHHH---HHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence            34566754   599999999999866432     344 799999999999999999999999999999875 88999997


Q ss_pred             H
Q 007010          558 L  558 (621)
Q Consensus       558 l  558 (621)
                      +
T Consensus       248 ~  248 (248)
T TIGR00241       248 L  248 (248)
T ss_pred             C
Confidence            4

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=98.43  E-value=2.7e-06  Score=89.15  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-----CCceeeccCCC-chh
Q 007010          479 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-SVL  552 (621)
Q Consensus       479 ~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-----g~pV~~~~~~e-~~a  552 (621)
                      ....++|++.   ++..+++-.+...   +.+.+..-+.|.++||.++|+.+.+.+.+.+     +.+|.+++.++ ..|
T Consensus       352 ~G~~reDIaA---GL~~SIA~Rv~s~---l~r~~~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GA  425 (432)
T TIGR02259       352 LGDKREDILA---GLHRAIILRAISI---ISRSGGITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGA  425 (432)
T ss_pred             CCCCHHHHHH---HHHHHHHHHHHHH---HhcccCCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHH
Confidence            4446778654   8888887554444   3333222356999999999999999999999     57888887654 779


Q ss_pred             HHHHHHH
Q 007010          553 LGAAILG  559 (621)
Q Consensus       553 lGAA~lA  559 (621)
                      +|||+.|
T Consensus       426 LGAAL~a  432 (432)
T TIGR02259       426 LGASEFA  432 (432)
T ss_pred             HHHHHhC
Confidence            9999875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.05  E-value=8.4e-06  Score=82.68  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-Cc
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CS  134 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~  134 (621)
                      |+||||+|||++|++++| +|+++...+.             ||+.||+.+.+++++++++.+.+..+|.+|++|++ ++
T Consensus         1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~   66 (248)
T TIGR00241         1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL-------------DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGRH   66 (248)
T ss_pred             CEEEEEcChhheEEEEEc-CCEEEEEEEe-------------cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCcc
Confidence            579999999999999999 8998887654             45568899999999999888777789999999998 77


Q ss_pred             eEE
Q 007010          135 LVA  137 (621)
Q Consensus       135 ~v~  137 (621)
                      +|+
T Consensus        67 ~v~   69 (248)
T TIGR00241        67 KVG   69 (248)
T ss_pred             ccc
Confidence            654

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.00026  Score=74.38  Aligned_cols=78  Identities=24%  Similarity=0.316  Sum_probs=60.2

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (621)
                      +.+++|||||.|++|++++|.+|+++...+.+++.       ..+.+.+.+.+.+.+++++++.+ ...++.+||+   .
T Consensus         5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi---~   73 (314)
T COG1940           5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT-------PDPEEAILEAILALVAELLKQAQ-GRVAIIGIGI---P   73 (314)
T ss_pred             CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC-------CCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEe---c
Confidence            35899999999999999999999999999998872       23335888889999999887654 3456777877   4


Q ss_pred             ceEEecCCC
Q 007010          134 SLVAVDADG  142 (621)
Q Consensus       134 ~~v~vD~~G  142 (621)
                      +...+|...
T Consensus        74 ~pg~~~~~~   82 (314)
T COG1940          74 GPGDVDNGT   82 (314)
T ss_pred             cceeccCCc
Confidence            444555443

>PRK13317 pantothenate kinase; Provisional

Probab=97.62  E-value=0.0017  Score=66.79  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHHHHHHHHHH
Q 007010          423 VSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG-----MTLDSSEKQLALLYLATVQGI  497 (621)
Q Consensus       423 ~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~G-----l~~~~~~~~~~~~~rAvlEgi  497 (621)
                      ...+++|.+++.+-..         ..-+ +.+-.+.|...+....+.+.+.|+     ++....++|+++   +++..+
T Consensus       140 ~~~~~el~~la~~g~~---------~~~D-l~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaa---sl~~~v  206 (277)
T PRK13317        140 ISDYEQLIELAKHGDR---------NNID-LKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILA---GVIGLV  206 (277)
T ss_pred             CCCHHHHHHHHhcCCC---------cccc-ceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHH---HHHHHH
Confidence            4567888877754210         0111 223344433222234556666655     334456888765   999988


Q ss_pred             HHHHHHHHHHHHhCCCCcCEEEEec-CCCCCHHHHHHHHHhh---CCceeeccCC-CchhHHHHHHHH
Q 007010          498 AYGTRHIVEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII---GCPIILPREN-ESVLLGAAILGA  560 (621)
Q Consensus       498 a~~~r~~l~~l~~~g~~~~~I~~~G-Gga~s~~w~Qi~Advl---g~pV~~~~~~-e~~alGAA~lA~  560 (621)
                      +..+..+.-.+.+. ..+++|+++| |.++|+.+++.+++.+   +..+..++++ -.+|+|||+.|.
T Consensus       207 ~~~I~~lA~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~  273 (277)
T PRK13317        207 GEVITTLSIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT  273 (277)
T ss_pred             HHHHHHHHHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence            87776664333332 3457899999 6899999999999999   7888888755 478999998864

>PRK09698 D-allose kinase; Provisional

Probab=97.37  E-value=0.0014  Score=68.49  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=54.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .+++|||+|.|++|++++|.+|+++.+.+.+++.       ..+++. .+.+.+.+++++++.+   .+|.+|||+. .+
T Consensus         4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~-pG   71 (302)
T PRK09698          4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGF-PA   71 (302)
T ss_pred             cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeC-Cc
Confidence            6899999999999999999999999887776641       123343 7777788888877643   5789999833 34


Q ss_pred             eEEecCC
Q 007010          135 LVAVDAD  141 (621)
Q Consensus       135 ~v~vD~~  141 (621)
                        ++|.+
T Consensus        72 --~vd~~   76 (302)
T PRK09698         72 --LVSKD   76 (302)
T ss_pred             --ceeCC
Confidence              45665

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=97.30  E-value=0.0013  Score=69.09  Aligned_cols=86  Identities=27%  Similarity=0.444  Sum_probs=64.8

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCceEE
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVA  137 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~  137 (621)
                      ||||+|.|++|++++|.+|+++.....+.+         .+++++.+.+.+.+++++++.+....+|.+|||+ ..|  +
T Consensus         1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva-~pG--~   68 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIG-APG--P   68 (318)
T ss_pred             CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEe-ccc--c
Confidence            699999999999999999999887666543         3678899999999999988776666789999993 344  3


Q ss_pred             ecCC-CCceeecCCCCCCcceeEEcCc
Q 007010          138 VDAD-GSPVSVSWNGDSRRNIIVWMDH  163 (621)
Q Consensus       138 vD~~-G~pl~~~~~~~~~~p~i~W~D~  163 (621)
                      +|.+ |....        .|.+-|.+-
T Consensus        69 vd~~~g~~~~--------~~~~~w~~~   87 (318)
T TIGR00744        69 VNRQRGTVYF--------AVNLDWKQE   87 (318)
T ss_pred             ccCCCCEEEe--------cCCCCCCCC
Confidence            4654 55332        344557654

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.19  E-value=0.0021  Score=65.47  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=52.1

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++||||+|.|++|++++|.+|+++.+.+.+++        ..+++++.+.+.+++++.....    ..+.+|||+ ..+ 
T Consensus         1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~-~pG-   66 (256)
T PRK13311          1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTYC----GVQGSVGIG-IPG-   66 (256)
T ss_pred             CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCCceEEEE-ecC-
Confidence            47999999999999999999999988777664        2467778888777777664321    234467763 244 


Q ss_pred             EEecCC-CC
Q 007010          136 VAVDAD-GS  143 (621)
Q Consensus       136 v~vD~~-G~  143 (621)
                       ++|.+ |.
T Consensus        67 -~vd~~~g~   74 (256)
T PRK13311         67 -LPNADDGT   74 (256)
T ss_pred             -cEECCCCE
Confidence             34665 44

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=97.13  E-value=0.0014  Score=67.26  Aligned_cols=75  Identities=24%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCcee-eccC-CCchhHHHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGAAI  557 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~-~~~~-~e~~alGAA~  557 (621)
                      ...++|++.   ++.++++-.+   ...+++.++ -+.|.++||.++|+.+.+.+.+.|+++|. .+.. .-..|+|||+
T Consensus       212 G~~~edI~a---Gl~~sia~rv---~~~~~~~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL  284 (293)
T TIGR03192       212 GYTKNMVIA---AYCQAMAERV---VSLLERIGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAAL  284 (293)
T ss_pred             CCCHHHHHH---HHHHHHHHHH---HHHhcccCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHH
Confidence            335677654   8888888544   444444332 24599999999999999999999999998 4543 4578999999


Q ss_pred             HHHh
Q 007010          558 LGAV  561 (621)
Q Consensus       558 lA~~  561 (621)
                      +|..
T Consensus       285 ~A~~  288 (293)
T TIGR03192       285 FGYT  288 (293)
T ss_pred             HHHH
Confidence            9853

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=97.11  E-value=0.0018  Score=69.09  Aligned_cols=73  Identities=18%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG  559 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~lA  559 (621)
                      ..++|++.   ++..+++-.+..  ..+++.+. -+.|.++||.++|+.+...+.+.+|.+|.+++.++ ..|+|||++|
T Consensus       328 ~~~eDIaA---Gl~~SIa~rv~~--~l~~~~~i-~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A  401 (404)
T TIGR03286       328 ASPEDVAA---AACHSVAEQVYE--QQLQEIDV-REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA  401 (404)
T ss_pred             CCHHHHHH---HHHHHHHHHHHH--HHhhcCCC-CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence            45788765   888888855543  12333322 23499999999999999999999999999998666 7799999987

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=97.08  E-value=0.00056  Score=65.51  Aligned_cols=77  Identities=25%  Similarity=0.378  Sum_probs=63.8

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CceE
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLV  136 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~v  136 (621)
                      ||||+|+|.+-++++|.+.+++...+.++.           |++....+.++++++++..+.++.+|..|.++++ ..-.
T Consensus         2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA   70 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA   70 (176)
T ss_pred             eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence            799999999999999988788888888763           4566788889999998887777899999999886 5556


Q ss_pred             EecCCCCce
Q 007010          137 AVDADGSPV  145 (621)
Q Consensus       137 ~vD~~G~pl  145 (621)
                      ++.++|.++
T Consensus        71 l~e~~g~~v   79 (176)
T PF05378_consen   71 LLERKGARV   79 (176)
T ss_pred             HHhccCCCc
Confidence            677777665

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.0016  Score=66.37  Aligned_cols=71  Identities=30%  Similarity=0.346  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        53 ~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +|+|+||||-|+|++++++.|.+|+++......=..      ...++ ++-+..+.+++++++.+++.++++|..+.+
T Consensus         3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN------~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a   74 (301)
T COG2971           3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN------IQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIVA   74 (301)
T ss_pred             CccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce------ecccchHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence            457999999999999999999999999887543211      23355 788899999999999888888887765543

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=97.04  E-value=0.0022  Score=61.34  Aligned_cols=87  Identities=24%  Similarity=0.385  Sum_probs=65.7

Q ss_pred             EEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCceEEe
Q 007010           59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAV  138 (621)
Q Consensus        59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~v  138 (621)
                      |||+|+++++++++|.+|+++.+.+.+++         .+++++.+.+.+.++++..+.+.    . +|||+ ..+  ++
T Consensus         1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~----~-gIgi~-~pG--~v   63 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGR----S-GIGIS-VPG--IV   63 (179)
T ss_dssp             EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTC----E-EEEEE-ESS--EE
T ss_pred             CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhccc----c-cEEEe-ccc--cC
Confidence            79999999999999999999998887764         58899999999999999887642    2 77773 244  46


Q ss_pred             cCC-CCceeecCCCCCCcceeEEcCcchHHHHH
Q 007010          139 DAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAE  170 (621)
Q Consensus       139 D~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~  170 (621)
                      |.+ |..+.        .|...|.+-.-.+..+
T Consensus        64 ~~~~g~i~~--------~~~~~~~~~~l~~~l~   88 (179)
T PF00480_consen   64 DSEKGRIIS--------SPNPGWENIPLKEELE   88 (179)
T ss_dssp             ETTTTEEEE--------CSSGTGTTCEHHHHHH
T ss_pred             cCCCCeEEe--------cCCCCcccCCHHHHhh
Confidence            666 45553        5667788865544443

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=97.02  E-value=0.00083  Score=57.59  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPI   86 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~   86 (621)
                      +||||+|+|.+|++++|.+|+++.....+.
T Consensus         3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~   32 (99)
T smart00732        3 VLGLDPGRKGIGVAVVDETGKLADPLEVIP   32 (99)
T ss_pred             EEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence            799999999999999999999887666554

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK09557 fructokinase; Reviewed

Probab=96.94  E-value=0.0049  Score=64.28  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++||||+|.|++|++++|.+|+++...+.+++        .++++++.+.+.+.++++....    ..+.+|||+. .+ 
T Consensus         1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~-pG-   66 (301)
T PRK09557          1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI-PG-   66 (301)
T ss_pred             CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-cc-
Confidence            47999999999999999999999888776654        2467788888888887776542    3457788833 44 


Q ss_pred             EEecCC-CCce
Q 007010          136 VAVDAD-GSPV  145 (621)
Q Consensus       136 v~vD~~-G~pl  145 (621)
                       ++|.+ |..+
T Consensus        67 -~vd~~~g~i~   76 (301)
T PRK09557         67 -SISPYTGLVK   76 (301)
T ss_pred             -cCcCCCCeEE
Confidence             45654 5544

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.94  E-value=0.0032  Score=63.68  Aligned_cols=74  Identities=22%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-Cc----eeeccC-CCchhH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPRE-NESVLL  553 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~p----V~~~~~-~e~~al  553 (621)
                      ...++|++.   ++..+++-.+.   ..+++.+...++|.++||.++|+.+.+.+.+.|+ .+    |.+++. .-..|+
T Consensus       183 G~~~edI~a---Gl~~sia~r~~---~~~~~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAl  256 (262)
T TIGR02261       183 GISAPNILK---GIHESMADRLA---KLLKSLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAI  256 (262)
T ss_pred             CCCHHHHHH---HHHHHHHHHHH---HHHhccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHH
Confidence            345677654   88888886443   3444444334569999999999999999999884 23    333333 346799


Q ss_pred             HHHHHH
Q 007010          554 GAAILG  559 (621)
Q Consensus       554 GAA~lA  559 (621)
                      |||++|
T Consensus       257 GAAl~~  262 (262)
T TIGR02261       257 GAALWG  262 (262)
T ss_pred             HHHHcC
Confidence            999874

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=96.91  E-value=0.0034  Score=64.40  Aligned_cols=63  Identities=24%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      +++|||+|+|++|++|+| +++++.....++.         .+|.   +...+++++++++.+....+|..+++|+
T Consensus        33 ~~~GIDiGStt~K~Vlld-~~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TG   95 (293)
T TIGR03192        33 ITCGIDVGSVSSQAVLVC-DGELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTG   95 (293)
T ss_pred             EEEEEEeCchhEEEEEEe-CCEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEEC
Confidence            899999999999999999 4566665554432         2332   3456677777777776556777777654

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PRK13410 molecular chaperone DnaK; Provisional

Probab=96.90  E-value=0.0028  Score=73.26  Aligned_cols=83  Identities=22%  Similarity=0.253  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA  556 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA  556 (621)
                      -+|.++..++..+++-+.-.+++.+   ++.+.   .++.|+++||+++.|.+.+++.++||.++.. ....|+.|+|||
T Consensus       295 itR~~FE~l~~~l~~r~~~~i~~~L---~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAA  371 (668)
T PRK13410        295 LDRKQFESLCGDLLDRLLRPVKRAL---KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAA  371 (668)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHH
Confidence            3566665555555555443333333   33443   5789999999999999999999999986654 346779999999


Q ss_pred             HHHHhhcccc
Q 007010          557 ILGAVAAKRY  566 (621)
Q Consensus       557 ~lA~~a~G~~  566 (621)
                      +.|+...+..
T Consensus       372 i~aa~ls~~~  381 (668)
T PRK13410        372 IQAGILAGEL  381 (668)
T ss_pred             HHHHhhcccc
Confidence            9999876643

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=96.89  E-value=0.0052  Score=64.12  Aligned_cols=74  Identities=22%  Similarity=0.333  Sum_probs=53.2

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      +++|||+|.|++|++++|.+|+++.+.+.+++        ..+++++.+.+.+.++++....    ..+.+|||+. .| 
T Consensus         1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~-pG-   66 (303)
T PRK13310          1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIGI-PG-   66 (303)
T ss_pred             CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeC-CC-
Confidence            36999999999999999999999988776654        2467888888888888775432    2344677732 44 


Q ss_pred             EEecCC-CCc
Q 007010          136 VAVDAD-GSP  144 (621)
Q Consensus       136 v~vD~~-G~p  144 (621)
                       ++|.+ |..
T Consensus        67 -~vd~~~g~~   75 (303)
T PRK13310         67 -MPETEDGTL   75 (303)
T ss_pred             -cccCCCCEE
Confidence             34654 543

>CHL00094 dnaK heat shock protein 70

Probab=96.82  E-value=0.0034  Score=72.20  Aligned_cols=54  Identities=24%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             CcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHHHhhccccC
Q 007010          514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGAVAAKRYS  567 (621)
Q Consensus       514 ~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA~~a~G~~~  567 (621)
                      .++.|+++||+++.|.+.++++++||.++... ...|+.|+|||+.|+...|.++
T Consensus       328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~  382 (621)
T CHL00094        328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK  382 (621)
T ss_pred             hCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence            67899999999999999999999999877554 3567899999999998777543

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=96.79  E-value=0.0029  Score=65.01  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=52.3

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      ||||.|+|++|++++|.+|+++.+....-..     ....+.++..+.+.+++.+++++.+.+..+|..+.+
T Consensus         1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n-----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~   67 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN-----YNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICI   67 (271)
T ss_dssp             EEEEECSSEEEEEEEETTSEEEEEEEES-TT-----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             CEEeeChheeeeEEEeCCCCEEEEEEeCCCC-----CCCCCcchhhhHHHHHHHHHHHHcCCCccccceeee
Confidence            7999999999999999999988776543221     112456788889999999999998887777776654

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=96.59  E-value=0.0067  Score=63.38  Aligned_cols=73  Identities=21%  Similarity=0.356  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcCE-EEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVE-HCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAA  556 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~-~l~~~g~~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA  556 (621)
                      -.+++|+.-   ++.++++-+   .+. .+++  ++++. |++.||.+.|..+...+.|.+|++|.+|+.++ ..|+|||
T Consensus       314 G~~~EdI~A---Gl~~Sv~~~---v~~~~~~~--~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAA  385 (396)
T COG1924         314 GASPEDILA---GLAYSVAEN---VAEKVIKR--VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAA  385 (396)
T ss_pred             CCCHHHHHH---HHHHHHHHH---HHHHHhhc--cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHH
Confidence            345666543   566665533   334 3333  33433 99999999999999999999999999998654 7799999


Q ss_pred             HHHH
Q 007010          557 ILGA  560 (621)
Q Consensus       557 ~lA~  560 (621)
                      ++|.
T Consensus       386 L~a~  389 (396)
T COG1924         386 LIAK  389 (396)
T ss_pred             HHHh
Confidence            9875

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=96.57  E-value=0.0074  Score=69.57  Aligned_cols=81  Identities=20%  Similarity=0.310  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeeccCCCchhHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAA  556 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~~~e~~alGAA  556 (621)
                      -+|.++..+...+++-+.-.+++.+   ++.+   ..++.|+++||.++.|.+.+++.+.||. |+......|+.|+|||
T Consensus       320 ItR~efe~l~~~l~~r~~~~v~~~L---~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAA  396 (657)
T PTZ00186        320 ISRSKFEGITQRLIERSIAPCKQCM---KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAA  396 (657)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHH
Confidence            3677776666666666554444443   3333   3678999999999999999999999997 4455557789999999


Q ss_pred             HHHHhhcc
Q 007010          557 ILGAVAAK  564 (621)
Q Consensus       557 ~lA~~a~G  564 (621)
                      +.|+.-.+
T Consensus       397 i~a~~l~~  404 (657)
T PTZ00186        397 TLGGVLRG  404 (657)
T ss_pred             HHHHHhcc
Confidence            99986554

>PRK13318 pantothenate kinase; Reviewed

Probab=96.48  E-value=0.009  Score=60.93  Aligned_cols=62  Identities=21%  Similarity=0.406  Sum_probs=43.3

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      +|+||+|.|++|.+++| +|+++...+.+++       ....++++.    +.++++++..+.+..+|.+|+++
T Consensus         2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~-------~~~~~~~~~----~~l~~l~~~~~~~~~~i~~I~is   63 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD-------SRRTADEYG----VWLKQLLGLSGLDPEDITGIIIS   63 (258)
T ss_pred             EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC-------CCCCHHHHH----HHHHHHHHHcCCCcccCceEEEE
Confidence            68999999999999999 6888877666654       123344544    34455555544444678999994

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=96.48  E-value=0.0084  Score=69.14  Aligned_cols=86  Identities=20%  Similarity=0.229  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAIL  558 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~l  558 (621)
                      .-+|.++-.+...+++-+.-.+++.++...-....++.|+++||+++.|.+.+++.+.||.++... ...++.|+|||+.
T Consensus       292 ~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~  371 (627)
T PRK00290        292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQ  371 (627)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHH
Confidence            346777766556666655444444433221112357899999999999999999999999887543 4677889999999


Q ss_pred             HHhhccc
Q 007010          559 GAVAAKR  565 (621)
Q Consensus       559 A~~a~G~  565 (621)
                      |+.-.|.
T Consensus       372 aa~l~~~  378 (627)
T PRK00290        372 GGVLAGD  378 (627)
T ss_pred             HHHhcCC
Confidence            9876553

>PRK13321 pantothenate kinase; Reviewed

Probab=96.46  E-value=0.0076  Score=61.39  Aligned_cols=62  Identities=26%  Similarity=0.423  Sum_probs=43.1

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      +|+||+|.|++|.+++|.+ +++...+.+++       ...+++++...+.+.++    +.+.+.++|.+|+++
T Consensus         2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~l~~----~~~~~~~~i~~i~vs   63 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLSLFR----HAGLDPEDIRAVVIS   63 (256)
T ss_pred             EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHHHHH----HcCCChhhCCeEEEE
Confidence            6899999999999999944 77776666554       23455666665555554    334445578899984

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=96.45  E-value=0.0058  Score=65.97  Aligned_cols=86  Identities=22%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             eEEEEecCccceeeEEEc-CCCCEEEEEEeeecccc-CCC------ccc------cCHHHHHHHHHHHHHHHHHHcCCCC
Q 007010           56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIE------QSSTDIWHAICAAVDSACSLANVDG  121 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~-~~g------~~e------qd~~~~~~~~~~~l~~~~~~~~~~~  121 (621)
                      |-++||||||.+.+.++| .+|+++++.+...|... ..+      ++.      +=-..+.+.+.+.+.+++++.++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~   81 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP   81 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            678999999999999999 58999999988877542 111      122      2223345566666666777778999


Q ss_pred             CCEEEEEEcC-C-CceEEecCC
Q 007010          122 EEVKGVGFAA-T-CSLVAVDAD  141 (621)
Q Consensus       122 ~~I~aIgis~-~-~~~v~vD~~  141 (621)
                      ++|..|.|++ + +..++++-+
T Consensus        82 ~~I~~i~i~GNt~M~hLllGl~  103 (412)
T PF14574_consen   82 EDIYEIVIVGNTTMLHLLLGLD  103 (412)
T ss_dssp             GGEEEEEEEE-HHHHHHHHT--
T ss_pred             HHeEEEEEEecHHHHHHHcCCC
Confidence            9999999976 3 333444433

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=96.40  E-value=0.0074  Score=60.82  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCC-CchhHHHHH
Q 007010          486 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI  557 (621)
Q Consensus       486 ~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~alGAA~  557 (621)
                      +..+....++.+.-.+++.++   +  .+++.|+++||+|+.+.+.+.+.+.||.||..+.++ +++|+|+|+
T Consensus       171 ~~~~i~~~~~~i~~~i~~~l~---~--~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       171 IFPVVKPVYQKMASIVKRHIE---G--QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---h--CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence            333455666666666665554   2  356799999999999999999999999999887754 588999986

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=96.39  E-value=0.011  Score=60.53  Aligned_cols=70  Identities=20%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCC-CchhHHHHHH
Q 007010          484 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAIL  558 (621)
Q Consensus       484 ~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~alGAA~l  558 (621)
                      .++..+.+..+|-+.-.+++.++.     .+++.|+++||+|+.+.+.+++++.||.||+++..+ ..+++|+|+.
T Consensus       196 ~~~~~ii~~~~~~i~~~i~~~l~~-----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~  266 (267)
T PRK15080        196 KEIFPVVKPVVEKMASIVARHIEG-----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS  266 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence            344445556666665555554442     367899999999999999999999999999998766 5889999975

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.34  E-value=0.013  Score=62.72  Aligned_cols=20  Identities=15%  Similarity=0.189  Sum_probs=11.3

Q ss_pred             EEcccccchhHHHHHHHHhh
Q 007010          389 LTEGGQSATGALLDYIIENH  408 (621)
Q Consensus       389 ~~~~~~~~~G~~l~Wl~~~~  408 (621)
                      +..-|...+|..|+-+.+.+
T Consensus       268 MNdkCAAGTGrFLE~~A~~L  287 (404)
T TIGR03286       268 MGGICAGASGRFLEMTAKRL  287 (404)
T ss_pred             EcCcccccCcHHHHHHHHHh
Confidence            33445556777776555443

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=96.28  E-value=0.013  Score=67.15  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAIL  558 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~l  558 (621)
                      .-++.++..+..-+++-+.-.++..++...-....++.|+++||+++.|...+++.+.|+.++... ...++.|+|||+.
T Consensus       278 ~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~  357 (599)
T TIGR01991       278 KLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQ  357 (599)
T ss_pred             EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHH
Confidence            336777776666666666544444443221112357899999999999999999999999766543 4678889999999


Q ss_pred             HHhhcc
Q 007010          559 GAVAAK  564 (621)
Q Consensus       559 A~~a~G  564 (621)
                      |+.-.+
T Consensus       358 a~~l~~  363 (599)
T TIGR01991       358 ADLLAG  363 (599)
T ss_pred             HHHhcc
Confidence            987543

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=96.26  E-value=0.014  Score=67.17  Aligned_cols=81  Identities=20%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA  556 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA  556 (621)
                      -++.++..+..-+++-+.-.++..+   ++.+.   .++.|+++||+++.|...+++++.||.++.. ....++.|+|||
T Consensus       295 itr~efe~l~~~l~~~~~~~i~~~L---~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAA  371 (616)
T PRK05183        295 ITREQFNALIAPLVKRTLLACRRAL---RDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAA  371 (616)
T ss_pred             EcHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHH
Confidence            3567776555566665544444333   33333   5789999999999999999999999976644 346778899999


Q ss_pred             HHHHhhcc
Q 007010          557 ILGAVAAK  564 (621)
Q Consensus       557 ~lA~~a~G  564 (621)
                      +.|+.-.+
T Consensus       372 i~a~~l~~  379 (616)
T PRK05183        372 IQADILAG  379 (616)
T ss_pred             HHHHHhcc
Confidence            99986544

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=96.24  E-value=0.012  Score=67.54  Aligned_cols=81  Identities=23%  Similarity=0.298  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAI  557 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~  557 (621)
                      +|.++-.++.-+++.+.-.+++.+   ++.+.   .++.|+++||.++.|.+.+++.+.||.++... ...++.|+|||+
T Consensus       292 tr~~fe~l~~~l~~~~~~~i~~~l---~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~  368 (595)
T TIGR02350       292 TRAKFEELTADLVERTKEPVRQAL---KDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAI  368 (595)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHH
Confidence            577776555555555544344333   33333   57899999999999999999999999877653 456788999999


Q ss_pred             HHHhhccc
Q 007010          558 LGAVAAKR  565 (621)
Q Consensus       558 lA~~a~G~  565 (621)
                      .|+.-.+.
T Consensus       369 ~aa~l~~~  376 (595)
T TIGR02350       369 QGGVLKGD  376 (595)
T ss_pred             HHHHhcCC
Confidence            99875543

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=96.20  E-value=0.017  Score=66.03  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILG  559 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA  559 (621)
                      -++.++-.+.+-+++-+.-.++..++...  ...++.|+++||.++.|...+++.+.||.++... +..++.|+|||+.|
T Consensus       277 itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a  354 (595)
T PRK01433        277 INKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA  354 (595)
T ss_pred             EcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence            35777766566666665544444444322  2468999999999999999999999999887654 46678899999999


Q ss_pred             Hhh
Q 007010          560 AVA  562 (621)
Q Consensus       560 ~~a  562 (621)
                      +.-
T Consensus       355 ~~l  357 (595)
T PRK01433        355 ENL  357 (595)
T ss_pred             HHh
Confidence            874

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.17  E-value=0.015  Score=58.86  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             eEEEEecCccceeeEEEcCCCCE-EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~v-v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      +++|||+|+|++|++++|.+++. .......++..      ..+|   .+...+++++++++.+....+|..|+.|+-
T Consensus         2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TGY   70 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR------QRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTGE   70 (262)
T ss_pred             eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC------CCCH---HHHHHHHHHHHHHHcCCChhheEEEEEECC
Confidence            68999999999999999965542 22222222210      1233   234567777887777766678888887553

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=96.15  E-value=0.018  Score=60.24  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=12.0

Q ss_pred             EEcccccchhHHHHHHHHhh
Q 007010          389 LTEGGQSATGALLDYIIENH  408 (621)
Q Consensus       389 ~~~~~~~~~G~~l~Wl~~~~  408 (621)
                      +.+.|...+|+.|+-+.+.+
T Consensus       256 mN~~CAAGtGrFLE~~A~~L  275 (396)
T COG1924         256 MNDKCAAGTGRFLEVIARRL  275 (396)
T ss_pred             eccccccccchHHHHHHHHh
Confidence            34456666777776665544

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=96.09  E-value=0.011  Score=67.81  Aligned_cols=83  Identities=19%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA~  560 (621)
                      +|.++-.+..-+++.+.-.++.+++.......+++.|.++||+++.|.+.+++.+.|+.++... +..++.|+|||+.|+
T Consensus       296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~  375 (602)
T PF00012_consen  296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA  375 (602)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred             ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence            5677665555566555544444443221112357899999999999999999999999877654 356788999999998


Q ss_pred             hhcc
Q 007010          561 VAAK  564 (621)
Q Consensus       561 ~a~G  564 (621)
                      .-.+
T Consensus       376 ~~~~  379 (602)
T PF00012_consen  376 ILSG  379 (602)
T ss_dssp             HHHT
T ss_pred             hhcc
Confidence            6555

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=95.97  E-value=0.27  Score=50.52  Aligned_cols=122  Identities=17%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCC--CCCCCCCCceeEEc-C-----CCCCCHHHHHHHHHHH
Q 007010          422 HVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICG-M-----TLDSSEKQLALLYLAT  493 (621)
Q Consensus       422 ~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~G-l-----~~~~~~~~~~~~~rAv  493 (621)
                      +...|+++.+++++-..         ..-+ +.+..+.|..  .+--+.+.-++-+| +     +....++|+++   ++
T Consensus       144 ~~~~~~el~~lA~~G~~---------~~vD-l~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAa---SL  210 (279)
T TIGR00555       144 GIQTFDELLEMAQHGDR---------TNVD-LLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAA---SL  210 (279)
T ss_pred             CCCCHHHHHHHHHcCCC---------cccc-cccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHHH---HH
Confidence            34568888887764211         0111 2234444421  11224556677777 3     23456899775   99


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CCCCHHHHHHHHHhhC---CceeeccC-CCchhHHHHH
Q 007010          494 VQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG---CPIILPRE-NESVLLGAAI  557 (621)
Q Consensus       494 lEgia~~~r~~l~~l~~~g~~~~~I~~~GG-ga~s~~w~Qi~Advlg---~pV~~~~~-~e~~alGAA~  557 (621)
                      +..|+..+-.+.- +.......++|+..|| ...++..++.++..++   ..+..+++ .-.+|+|||+
T Consensus       211 l~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL  278 (279)
T TIGR00555       211 LGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL  278 (279)
T ss_pred             HHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence            9999987665533 3222245788999999 6789999999999876   44556664 4477899985

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PRK00292 glk glucokinase; Provisional

Probab=95.97  E-value=0.029  Score=58.97  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=26.2

Q ss_pred             CCeEEEEecCccceeeEEEc-CCCCEEEEEEeee
Q 007010           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPI   86 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~   86 (621)
                      |+++||||||+|++|++++| .+++++...+.++
T Consensus         1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~   34 (316)
T PRK00292          1 MKPALVGDIGGTNARFALCDWANGEIEQIKTYAT   34 (316)
T ss_pred             CceEEEEEcCccceEEEEEecCCCceeeeEEEec
Confidence            35899999999999999999 4666666655554

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=95.86  E-value=0.019  Score=60.89  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  557 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g-~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~  557 (621)
                      +++++.++....++.+.-.+++.++.... .. -.++ .|+++||+|+-|.+.+++++.|+.||.+.. ..++.|+|||+
T Consensus       240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~  319 (336)
T PRK13928        240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK  319 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence            46676666667777777666666654421 11 1244 699999999999999999999999998876 55688999999


Q ss_pred             HHHh
Q 007010          558 LGAV  561 (621)
Q Consensus       558 lA~~  561 (621)
                      .+..
T Consensus       320 ~~~~  323 (336)
T PRK13928        320 MLEN  323 (336)
T ss_pred             HHhc
Confidence            8765

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=95.77  E-value=0.022  Score=66.02  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGA  555 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGA  555 (621)
                      .-+|.++-.++.-+++-+.-.+++.+   ++.+.   .++.|+++||.++.|.+.+++.+.||.++.. ....++.|+||
T Consensus       333 ~itR~efe~l~~~l~~~~~~~i~~~L---~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GA  409 (663)
T PTZ00400        333 KLSRAKLEELTHDLLKKTIEPCEKCI---KDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGA  409 (663)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeecc
Confidence            33677766555555555443333333   34343   5789999999999999999999999987754 34678889999


Q ss_pred             HHHHHhhcc
Q 007010          556 AILGAVAAK  564 (621)
Q Consensus       556 A~lA~~a~G  564 (621)
                      |+.|+.-.+
T Consensus       410 Ai~aa~l~~  418 (663)
T PTZ00400        410 AIQAGVLKG  418 (663)
T ss_pred             HHHHHhhcC
Confidence            999987554

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=95.68  E-value=0.06  Score=55.82  Aligned_cols=60  Identities=23%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      +||||+|.++++++++|.+|+++...+.+++       ...+++++.+.+.+.+++...       ++.+|||+
T Consensus         3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~-------~~~~igi~   62 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP-------ASQTPEALRQALSALVSPLQA-------QADRVAVA   62 (291)
T ss_pred             EEEEEECCCEEEEEEEcCCCcEEEEEEecCC-------CCCCHHHHHHHHHHHHHHhhh-------cCcEEEEe
Confidence            7999999999999999999999987776664       123577777777777776542       34567773

>PLN03184 chloroplast Hsp70; Provisional

Probab=95.65  E-value=0.032  Score=64.71  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA  556 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA  556 (621)
                      -+|.++-.+..-+++-+.-.++.   .|++.+.   .++.|+++||.++.|.+.+++.+.||.++.. .+..|+.|+|||
T Consensus       332 itR~~fe~l~~~l~~r~~~~i~~---~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAA  408 (673)
T PLN03184        332 LTRAKFEELCSDLLDRCKTPVEN---ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAA  408 (673)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHH
Confidence            35666554444444433322332   3334443   5789999999999999999999999987654 456789999999


Q ss_pred             HHHHhhcc
Q 007010          557 ILGAVAAK  564 (621)
Q Consensus       557 ~lA~~a~G  564 (621)
                      +.|+.-.+
T Consensus       409 i~aa~ls~  416 (673)
T PLN03184        409 VQAGVLAG  416 (673)
T ss_pred             HHHHHhcc
Confidence            99987555

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=95.57  E-value=0.032  Score=64.58  Aligned_cols=81  Identities=16%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhC-Cce-eeccCCCchhHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGA  555 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg-~pV-~~~~~~e~~alGA  555 (621)
                      -+|.++-.+..-+++.+.-.++..++   +.+.   .++.|+++||.++.|.+.+++.+.|+ .++ ...+..|+.|+||
T Consensus       299 itR~~fe~l~~~l~~~~~~~i~~~L~---~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GA  375 (653)
T PTZ00009        299 ISRARFEELCGDYFRNTLQPVEKVLK---DAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGA  375 (653)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhh
Confidence            35777665555555555444444333   3332   57899999999999999999999996 455 4456778999999


Q ss_pred             HHHHHhhcc
Q 007010          556 AILGAVAAK  564 (621)
Q Consensus       556 A~lA~~a~G  564 (621)
                      |+.|+.-.+
T Consensus       376 a~~aa~ls~  384 (653)
T PTZ00009        376 AVQAAILTG  384 (653)
T ss_pred             hhhHHHhcC
Confidence            999987554

>PRK11678 putative chaperone; Provisional

Probab=95.44  E-value=0.075  Score=58.61  Aligned_cols=81  Identities=22%  Similarity=0.188  Sum_probs=61.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-CceeeccCCCchhHHHH
Q 007010          478 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGAA  556 (621)
Q Consensus       478 ~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~~~~~e~~alGAA  556 (621)
                      ...-+++++.++++..++-+.-.+++.   +++.+..++.|+++||.++.|...+++...|+ .|+...+.-++.|.|+|
T Consensus       366 ~~~ItR~efe~ii~~~l~ri~~~i~~~---L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla  442 (450)
T PRK11678        366 ATEISQQGLEEAISQPLARILELVQLA---LDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA  442 (450)
T ss_pred             ceeeCHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHH
Confidence            344567887765555555554444433   33456677899999999999999999999996 68888778888999999


Q ss_pred             HHHHh
Q 007010          557 ILGAV  561 (621)
Q Consensus       557 ~lA~~  561 (621)
                      +.|..
T Consensus       443 ~~a~~  447 (450)
T PRK11678        443 RWAQV  447 (450)
T ss_pred             HHHHh
Confidence            98754

>PRK13411 molecular chaperone DnaK; Provisional

Probab=95.22  E-value=0.044  Score=63.42  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhC-Cceee-ccCCCchhHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGA  555 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~-~~~~e~~alGA  555 (621)
                      -+|.++..+..-+++-+.-.+++   .|++.+.   .++.|+++||.++.|.+.+++.+.|+ .++.. ....++.|+||
T Consensus       294 itR~~fe~l~~~l~~~~~~~i~~---~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GA  370 (653)
T PRK13411        294 LTRAKFEELTKDLVEATIEPMQQ---ALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGA  370 (653)
T ss_pred             EcHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHH
Confidence            36677655444555444333333   3334444   37899999999999999999999997 55544 45678899999


Q ss_pred             HHHHHhhccc
Q 007010          556 AILGAVAAKR  565 (621)
Q Consensus       556 A~lA~~a~G~  565 (621)
                      |+.|+.-.+.
T Consensus       371 Ai~aa~l~~~  380 (653)
T PRK13411        371 AIQAGVLGGE  380 (653)
T ss_pred             HHHHHhhcCC
Confidence            9999865543

>PRK12408 glucokinase; Provisional

Probab=94.89  E-value=0.03  Score=59.43  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             CeEEEEecCccceeeEEEcCCCC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK   77 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~   77 (621)
                      .++|++|||+|++|.+++|.+|+
T Consensus        16 ~~~L~~DIGGT~i~~al~d~~g~   38 (336)
T PRK12408         16 ESFVAADVGGTHVRVALVCASPD   38 (336)
T ss_pred             ccEEEEEcChhhhheeEEeccCC
Confidence            45899999999999999998877

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=94.84  E-value=0.059  Score=57.05  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-cC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-ID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  557 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~-~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~  557 (621)
                      +++++.+++...++.+.-.+++.++.... .... ++ .|+++||+++.+.+.+.+.+.++.||.+.. ..++.|.|||+
T Consensus       241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~  320 (334)
T PRK13927        241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK  320 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence            45666666666677666666665554321 1111 23 599999999999999999999999999876 45577999999


Q ss_pred             HHHh
Q 007010          558 LGAV  561 (621)
Q Consensus       558 lA~~  561 (621)
                      .+..
T Consensus       321 ~~~~  324 (334)
T PRK13927        321 ALEN  324 (334)
T ss_pred             HHhh
Confidence            8765

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=94.75  E-value=0.21  Score=49.13  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=50.2

Q ss_pred             CeEEEEecCccceeeEEEcCCCC-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~-vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis  130 (621)
                      ..+|+||+|+|++|++++...|. .+...+..+++-.  .......+++++.+.++|.+.++.... +..+..-+|+|
T Consensus        63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~--~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT  138 (206)
T PF00349_consen   63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPE--ELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT  138 (206)
T ss_dssp             EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--H--HHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred             ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCCh--HHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence            46899999999999999996544 4444444443211  111234589999999999999987543 34566667775

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=94.70  E-value=0.065  Score=62.01  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=41.7

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      ...+||||||+|++|++++|.+|+++...+.+++.              ++.+.+.+++++++.+.  .++.+|||
T Consensus        17 ~~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igi   76 (638)
T PRK14101         17 DGPRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAI   76 (638)
T ss_pred             CCCEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEE
Confidence            34689999999999999999999987776655531              13345556666654332  35677777

>smart00842 FtsA Cell division protein FtsA

Probab=94.65  E-value=0.2  Score=48.31  Aligned_cols=72  Identities=25%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             EEEEecCccceeeEEEc--CCC--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      ++||||||+++|+++..  .+|  ++++....|  ... ..| .-.|.+..-+++.++++++=++++....+ ..+++++
T Consensus         1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~--s~gi~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g   76 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP--SRGIRKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISG   76 (187)
T ss_pred             CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec--CCCccCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcC
Confidence            47999999999999986  345  455554443  222 344 34588888888888888876666654333 3466655


Q ss_pred             C
Q 007010          132 T  132 (621)
Q Consensus       132 ~  132 (621)
                      .
T Consensus        77 ~   77 (187)
T smart00842       77 R   77 (187)
T ss_pred             C
Confidence            4

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=94.50  E-value=0.23  Score=54.39  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCCceeec
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILP  545 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l----~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~  545 (621)
                      ++.++..+.++-+|.+.-.+++.++.+    .+.+   ..+..|+++||+|+-+.+.++++++|+.||++.
T Consensus       289 ~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~  359 (420)
T PRK09472        289 QRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG  359 (420)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence            356677777888888877777777544    3333   346789999999999999999999999999874

>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=94.29  E-value=0.22  Score=50.47  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGF  129 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~-I~aIgi  129 (621)
                      +.+|.||+=|.|+.|.+++|++++++..+......+     .-.+.+...+.+.+.++++..+.+.++.. ++++|+
T Consensus         2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh-----~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL   73 (336)
T KOG1794|consen    2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNH-----WLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGL   73 (336)
T ss_pred             CceeEeecCCcceeEEEEECCCCCEeeEeecccccc-----ccCCchHHHHHHHHHHHHHHhhcCCCccCccceeee
Confidence            469999999999999999999999998876654322     22345677888999999999999888776 787776

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=94.19  E-value=0.092  Score=55.54  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-CcCE-EEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH-KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  557 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~-~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~  557 (621)
                      +++++.+++...++.+.-.+++.++.... ... .+++ |+++||+++.|.+.+.+++.++.||.+.. ..++.++|||+
T Consensus       245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~  324 (335)
T PRK13930        245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK  324 (335)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence            35565555556666666555555553311 001 1244 99999999999999999999999999876 45677999999


Q ss_pred             HHHh
Q 007010          558 LGAV  561 (621)
Q Consensus       558 lA~~  561 (621)
                      ++..
T Consensus       325 ~~~~  328 (335)
T PRK13930        325 ALEN  328 (335)
T ss_pred             HHhC
Confidence            8754

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=94.05  E-value=0.13  Score=54.56  Aligned_cols=79  Identities=14%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-CEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL  558 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~-~-~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~l  558 (621)
                      ++++.+++...++.+.-.++..++.... .... . ..|+++||+|+-|.+.+.+++.++.||.+.. ..++.|+|||++
T Consensus       245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~  324 (333)
T TIGR00904       245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA  324 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence            4455554555555555555554443221 1112 2 2699999999999999999999999999876 456789999988


Q ss_pred             HHh
Q 007010          559 GAV  561 (621)
Q Consensus       559 A~~  561 (621)
                      +..
T Consensus       325 ~~~  327 (333)
T TIGR00904       325 LED  327 (333)
T ss_pred             HhC
Confidence            644

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>TIGR02707 butyr_kinase butyrate kinase

Probab=93.62  E-value=0.17  Score=53.97  Aligned_cols=56  Identities=18%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc
Q 007010          491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR  546 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~  546 (621)
                      +.++|-.++.+...+-.+.- .+..++.|+++||.+.++.++..+-+-+.  .||.+.+
T Consensus       269 ~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~p  327 (351)
T TIGR02707       269 KLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYP  327 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeC
Confidence            36777777777766655543 33368899999999888776666555543  7888765

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=93.38  E-value=0.15  Score=54.19  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL  558 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~-g~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~l  558 (621)
                      ++++..++...++.+.-.++..++.... . .-.++ .|+++||+|+-+.+.+.+++.++.||.+.. ..++.++||+..
T Consensus       244 ~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        244 SKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence            4555433344444444444444433211 1 11244 599999999999999999999999999874 455778899876

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=93.22  E-value=0.42  Score=49.00  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=41.0

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~  118 (621)
                      .++++||||||+++|+++.+.+++++.....+-... ..|. -.|.+...+.+..+++.+-+..+
T Consensus        23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g   85 (267)
T PRK15080         23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLG   85 (267)
T ss_pred             CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhC
Confidence            469999999999999999987777666554443211 3344 45666666665555554433334

>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=0.23  Score=55.75  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      +|+++-.+.--++|=+-.-+...++...-.+-++..|=++||+++.|..-+++++.||.+..++- ..|+.|.|||+.++
T Consensus       301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA  380 (727)
T KOG0103|consen  301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA  380 (727)
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence            56777666667777666555555544221223566788999999999999999999999997654 67899999999988


Q ss_pred             hh
Q 007010          561 VA  562 (621)
Q Consensus       561 ~a  562 (621)
                      .-
T Consensus       381 Il  382 (727)
T KOG0103|consen  381 IL  382 (727)
T ss_pred             hc
Confidence            64

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=93.11  E-value=0.39  Score=52.66  Aligned_cols=76  Identities=18%  Similarity=0.300  Sum_probs=51.0

Q ss_pred             CCCeEEEEecCccceeeEEEc--CCC--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 007010           53 SRSVFLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGV  127 (621)
Q Consensus        53 ~~~~~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aI  127 (621)
                      ..++++||||||+++|+++..  .+|  ++++....|.  .. ..| .-.|.+..-+++.+++.++=+.++....++ .+
T Consensus         6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s--~gi~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v-~v   81 (420)
T PRK09472          6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPS--RGMDKG-GVNDLESVVKCVQRAIDQAELMADCQISSV-YL   81 (420)
T ss_pred             CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccC--CCccCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEE-EE
Confidence            346899999999999999876  355  3555555542  22 344 446888888888888888766566544443 36


Q ss_pred             EEcCC
Q 007010          128 GFAAT  132 (621)
Q Consensus       128 gis~~  132 (621)
                      ++++.
T Consensus        82 ~i~g~   86 (420)
T PRK09472         82 ALSGK   86 (420)
T ss_pred             EecCc
Confidence            66654

>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed

Probab=93.03  E-value=0.37  Score=51.41  Aligned_cols=59  Identities=22%  Similarity=0.322  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      +++|+.+   -+.|-.|.++.+.+..+.   ..+++|+++|||++|+.+++.+...+..+|...+
T Consensus       260 s~~D~~a---Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~  318 (365)
T PRK09585        260 SPEDVQA---TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTD  318 (365)
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence            5677654   677767766666664432   2356899999999999999999999976666544

>PRK13317 pantothenate kinase; Provisional

Probab=93.01  E-value=0.23  Score=51.08  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSA   82 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~   82 (621)
                      |.+.+|||+|+|.+|.+++|++++++.+.
T Consensus         1 m~~~iGIDiGstt~K~v~~~~~~~~~~~~   29 (277)
T PRK13317          1 MEMKIGIDAGGTLTKIVYLEEKKQRTFKT   29 (277)
T ss_pred             CCceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence            35889999999999999999888776443

>PLN02920 pantothenate kinase 1

Probab=93.00  E-value=4  Score=43.70  Aligned_cols=166  Identities=13%  Similarity=0.057  Sum_probs=96.6

Q ss_pred             eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010          351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  430 (621)
Q Consensus       351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (621)
                      -+++++||...+..+..                 ++.|-..+++.-||..+-=|...+.            +...|++|-
T Consensus       167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll  217 (398)
T PLN02920        167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL  217 (398)
T ss_pred             eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence            58888998755443322                 1233344555666665544444432            346788887


Q ss_pred             HHHHhhhhhcCCCCccCCCCCeEEccccCCCC---CCCCCCCCceeEEc--CCC-----CCCHHHHHHHHHHHHHHHHHH
Q 007010          431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAYG  500 (621)
Q Consensus       431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger---~P~~d~~arg~f~G--l~~-----~~~~~~~~~~~rAvlEgia~~  500 (621)
                      +++++=..         ..-+ +.+-.+.|..   .|--..++-++-+|  ...     +-+++|+++   +++--|+++
T Consensus       218 ~lA~~Gd~---------~nvD-llVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~---SLL~mVs~n  284 (398)
T PLN02920        218 ELSHQGNN---------RVID-MLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVAR---SLLRMISNN  284 (398)
T ss_pred             HHHhCCCc---------cccC-ceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence            77653110         0112 3355566532   22245666677667  321     235888765   999999998


Q ss_pred             HHHHHHHHHhCCCCcCEEEEecCCCCCH-HHHHHHHHhh------CCceeecc-CCCchhHHHHHHH
Q 007010          501 TRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADII------GCPIILPR-ENESVLLGAAILG  559 (621)
Q Consensus       501 ~r~~l~~l~~~g~~~~~I~~~GGga~s~-~w~Qi~Advl------g~pV~~~~-~~e~~alGAA~lA  559 (621)
                      +-++--...+ ...+++|+..|+..+++ ..++.++-..      ++....++ +.-.+|+||++..
T Consensus       285 IgqiA~L~A~-~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~  350 (398)
T PLN02920        285 IGQISYLNAL-RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY  350 (398)
T ss_pred             HHHHHHHHHH-HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence            8776433322 35688999999999886 6666555544      23333334 5557899997643

>TIGR01174 ftsA cell division protein FtsA

Probab=92.65  E-value=0.62  Score=50.10  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC--CcCE-EEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          482 SEKQLALLYLATVQGIAYGTR-HIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r-~~l~~l~~~g~--~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      ++.++.++.++.++-+.=.++ +   .+++.+.  .+++ |+++||+|+.+.+.+++.+.|+.||++..
T Consensus       281 s~~~l~~ii~~~~~ei~~~i~~~---~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~  346 (371)
T TIGR01174       281 SRKELAEIIEARAEEILEIVKQK---ELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL  346 (371)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence            456666555566665554443 3   3444433  4555 99999999999999999999999998865

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P

Probab=92.31  E-value=0.62  Score=49.75  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeeccCC----C-chhHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPREN----E-SVLLGA  555 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~~~----e-~~alGA  555 (621)
                      .++|+.+   -+.|-.|.++.+.++.+.   .++++|+++|||++|+.+++.+...+.. +|...+..    + --|+.=
T Consensus       258 ~~~D~~a---Tlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF  331 (364)
T PF03702_consen  258 SPEDILA---TLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF  331 (364)
T ss_dssp             -HHHHHH---HHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred             ChHHHHH---HHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence            3778654   788877777766666553   3478999999999999999999998864 88765421    1 225666


Q ss_pred             HHHHHhhc
Q 007010          556 AILGAVAA  563 (621)
Q Consensus       556 A~lA~~a~  563 (621)
                      |++|...+
T Consensus       332 A~La~~~~  339 (364)
T PF03702_consen  332 AWLAYRRL  339 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776554

It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.

>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=91.91  E-value=0.44  Score=50.25  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=45.9

Q ss_pred             CCcCEEEEecCCCCCHHHHHHHHHhhC--CceeeccCCCchhHHHHHHHHhhcccc
Q 007010          513 HKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPRENESVLLGAAILGAVAAKRY  566 (621)
Q Consensus       513 ~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~~~e~~alGAA~lA~~a~G~~  566 (621)
                      .++++|+++||..|-|-..|++-|.|+  .|-.-....|+.|.|||+.|++-.|.-
T Consensus       361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee  416 (663)
T KOG0100|consen  361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEE  416 (663)
T ss_pred             ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccccc
Confidence            478999999999999999999999994  344555678999999999999877763

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=91.86  E-value=0.34  Score=50.70  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=27.6

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeecc
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQI   88 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~   88 (621)
                      ||+|||+-++|++++|.+|++....+.+.|+
T Consensus         1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl   31 (318)
T TIGR03123         1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL   31 (318)
T ss_pred             CccccccceeeeEEecCCCceeEEEEecCcc
Confidence            6999999999999999999988877777774

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=91.24  E-value=0.45  Score=50.55  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--CCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          489 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       489 ~~rAvlEgia~~~r~~l~~l~~--~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      .++..++-++-++++.++.+..  .+.++++|+++||+++.+-+.+.+++-||.||++..
T Consensus       247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~  306 (340)
T PF11104_consen  247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN  306 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence            3568899999999999997654  356899999999999999999999999999999864

>TIGR00749 glk glucokinase, proteobacterial type

Probab=90.64  E-value=0.45  Score=50.00  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             EEEecCccceeeEEEcCCCCEEEE
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGS   81 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~   81 (621)
                      |.+|||+|++|.+++|++|+++.+
T Consensus         1 l~~DIGGT~i~~glvd~~g~~l~~   24 (316)
T TIGR00749         1 LVGDIGGTNARLALCEIAPGEISQ   24 (316)
T ss_pred             CeEecCcceeeEEEEecCCCceee
Confidence            579999999999999988776554

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=90.36  E-value=0.88  Score=51.90  Aligned_cols=55  Identities=27%  Similarity=0.334  Sum_probs=46.7

Q ss_pred             CCcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHHHHHHhhccccC
Q 007010          513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGAVAAKRYS  567 (621)
Q Consensus       513 ~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA~lA~~a~G~~~  567 (621)
                      .+++.|.++||.++.|...+.+++.++.+... ....|+.|+|||+.|+.-.|...
T Consensus       308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~  363 (579)
T COG0443         308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP  363 (579)
T ss_pred             hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc
Confidence            36888999999999999999999999966554 55788999999999998777543

>PF13941 MutL: MutL protein

Probab=90.32  E-value=1.1  Score=49.29  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=43.2

Q ss_pred             EEEEecCccceeeEEEc---CCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 007010           57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV  119 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d---~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~  119 (621)
                      +|.+|||+|-+|+.+||   .+.++++.++.|+.       ++  +.++...+.++++++-++.+.
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~--~~Dv~~G~~~A~~~l~~~~~~   58 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VE--PGDVTIGLNNALEQLEEQTPA   58 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cC--cccHHHHHHHHHHHHHHhcCC
Confidence            68899999999999999   46789999888886       22  256778888888888776653

>PLN02914 hexokinase

Probab=90.12  E-value=0.87  Score=50.53  Aligned_cols=62  Identities=13%  Similarity=0.282  Sum_probs=44.6

Q ss_pred             CCeEEEEecCccceeeEEEcCCC---CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010           54 RSVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g---~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~  117 (621)
                      ...+|+||+|+||.|+++++..|   +++...+..+++-.  ....-..+++|+.+.++|.+.+++.
T Consensus        94 ~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~l~~gt~~eLFdfIA~~i~~fl~~~  158 (490)
T PLN02914         94 KGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQ--ELMFGTSEELFDFIASGLANFVAKE  158 (490)
T ss_pred             eeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            34799999999999999999655   24554444443211  1123467899999999999999764

>PTZ00288 glucokinase 1; Provisional

Probab=89.81  E-value=2.1  Score=46.57  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=44.4

Q ss_pred             CCCeEEEEecCccceeeEEEcC---CCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEE
Q 007010           53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVG  128 (621)
Q Consensus        53 ~~~~~lgIDiGTtsiKa~l~d~---~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~-~~~~~I~aIg  128 (621)
                      +-.|+||+|||+|++|..+++.   ++..+.....++++      --+|..+..+.+.+.+.++.+... +....-.+|+
T Consensus        24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~iA   97 (405)
T PTZ00288         24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV------TKTDIRELLEFFDEVLQKLKKNLSFIQRVAAGAIS   97 (405)
T ss_pred             cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc------ccccHHHHHHHHHHHHHHHHhcCccccCcCeEEEE
Confidence            4579999999999999999985   23344444444431      124667777777777777665321 1122334566


Q ss_pred             E
Q 007010          129 F  129 (621)
Q Consensus       129 i  129 (621)
                      |
T Consensus        98 v   98 (405)
T PTZ00288         98 V   98 (405)
T ss_pred             E
Confidence            6

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=89.46  E-value=1.6  Score=44.54  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHH-----HHhhCCceeeccC-CCchhHHHHHHH
Q 007010          491 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG  559 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~-----Advlg~pV~~~~~-~e~~alGAA~lA  559 (621)
                      ..+++..+..+.+.+..+.+. +.....|.++||.++|..+..-+     ..+...|+.++.. ...+++|||++|
T Consensus       196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA  271 (271)
T PF01869_consen  196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA  271 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence            378888888888777766543 32223399999999997666544     5556667766554 557799999987

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PRK13324 pantothenate kinase; Reviewed

Probab=89.17  E-value=1.2  Score=45.38  Aligned_cols=62  Identities=19%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +|.||+|-|++|.+++| +++++...+.++.      ......+++.    ..++.++++.+.+..+|.+|.+
T Consensus         2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~------~~~~t~de~~----~~l~~~~~~~~~~~~~i~~vii   63 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYATS------SVDSTSDQMG----VFLRQALRENSVDLGKIDGCGI   63 (258)
T ss_pred             EEEEEeCCCceEEEEEE-CCEEEEEEEEecC------ccccchHHHH----HHHHHHHHhcCCCccCCCeEEE
Confidence            68999999999999999 3456554444431      0122334444    4455555554555566777777

>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []

Probab=89.08  E-value=1.7  Score=46.62  Aligned_cols=80  Identities=20%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCE-EEEecCCCCCHHHHHHHHHhhCCc-eeecc--CCCchhHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCP-IILPR--ENESVLLGAAI  557 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~-I~~~GGga~s~~w~Qi~Advlg~p-V~~~~--~~e~~alGAA~  557 (621)
                      ...|++.-.+..+|-+...+...+-  ++.+  .++ |.++||.+-|-.+++.+.+..+.. |.++.  ..++.++|||+
T Consensus       134 ~~~dlAa~~Q~~~E~~v~~~~~~~~--~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~  209 (360)
T PF02543_consen  134 RHADLAASAQKVLEEIVLHLVRHLL--ERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL  209 (360)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHH--HHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence            4578888888999988876543322  2233  455 999999999999999999996654 77766  45688999999


Q ss_pred             HHHhhccc
Q 007010          558 LGAVAAKR  565 (621)
Q Consensus       558 lA~~a~G~  565 (621)
                      .+....+.
T Consensus       210 ~~~~~~~~  217 (360)
T PF02543_consen  210 YAWHELGG  217 (360)
T ss_dssp             HHHHHTT-
T ss_pred             HHHHHhcC
Confidence            99877665

The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.

>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=2  Score=45.24  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-CCceee
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIIL  544 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-g~pV~~  544 (621)
                      +++|..+   ...|-.+-   .+++.+.-....+++++++|||++|+++|+.+|..+ |.+|..
T Consensus       264 ~a~Dv~a---TL~eltA~---tIv~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~  321 (371)
T COG2377         264 NAEDVQA---TLVELTAA---TIVKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVAT  321 (371)
T ss_pred             CHHHHHH---HHHHHHHH---HHHHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeee
Confidence            4567543   67775554   444444433356789999999999999999999999 555543

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=88.31  E-value=1.1  Score=47.66  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC--CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          490 YLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       490 ~rAvlEgia~~~r~~l~~l~~~--g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      .+.++|-++-++++.++.+...  +.++++|+++||+++.+-+...++..||.||++..
T Consensus       256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~  314 (348)
T TIGR01175       256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN  314 (348)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence            4588888988888888876442  45789999999999999999999999999999864

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PLN02362 hexokinase

Probab=88.14  E-value=1.4  Score=49.08  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=42.3

Q ss_pred             CeEEEEecCccceeeEEEcCCCC---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~  118 (621)
                      ..||+||+|+||.|+++++..|+   .+...+..+++-  +....-..+++|+.+.++|.+.++..+
T Consensus        95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip--~~l~~~~~~eLFd~IA~~i~~fl~~~~  159 (509)
T PLN02362         95 GTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIP--QHLMNSTSEVLFDFIASSLKQFVEKEE  159 (509)
T ss_pred             eeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecC--hhhccCCHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999997653   222211223211  111234678999999999999997643

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=88.08  E-value=4.4  Score=42.99  Aligned_cols=165  Identities=14%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010          351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  430 (621)
Q Consensus       351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (621)
                      -+++++||...+..+..                 ++.|-..+++.-||..+-=|...+.            +...|+++-
T Consensus       158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~  208 (341)
T PF03630_consen  158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL  208 (341)
T ss_dssp             EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred             EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence            58889998755443222                 2334444556666666544444332            335677777


Q ss_pred             HHHHhhhhhcCCCCccCCCCCeEEccccCCCC--CCCCCCCCceeEEcCCCC-------CCHHHHHHHHHHHHHHHHHHH
Q 007010          431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT  501 (621)
Q Consensus       431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~Gl~~~-------~~~~~~~~~~rAvlEgia~~~  501 (621)
                      +++++=..         ..-+ +.+..+.|..  .+.-..+.-++-+|--..       .+++|+++   +++--|++++
T Consensus       209 ~la~~G~~---------~~vD-llV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~---sll~mv~~nI  275 (341)
T PF03630_consen  209 ELAKKGDN---------SNVD-LLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAK---SLLNMVSNNI  275 (341)
T ss_dssp             HHHHH--G---------GGTS-EEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHH---HHHHHHHHHH
T ss_pred             HHhcCCCc---------cccC-ceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHH---HHHHHHHHHH
Confidence            77654111         0112 3355555544  222345566665554332       25788665   9999999998


Q ss_pred             HHHHHHHHhCCCCcCEEEEecCCCC-CHHHHHHHH---Hhh---CCceeecc-CCCchhHHHHHH
Q 007010          502 RHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DII---GCPIILPR-ENESVLLGAAIL  558 (621)
Q Consensus       502 r~~l~~l~~~g~~~~~I~~~GGga~-s~~w~Qi~A---dvl---g~pV~~~~-~~e~~alGAA~l  558 (621)
                      -++.-...+. ..+++|+++|...+ ++..+..++   +-.   ++....++ +.-.+|+||.+.
T Consensus       276 g~la~l~A~~-~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~  339 (341)
T PF03630_consen  276 GQLAYLHAKI-HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK  339 (341)
T ss_dssp             HHHHHHHHHH-HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred             HHHHHHHHHH-cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence            8875443332 35789999999885 578888888   433   23334444 556889998764

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>TIGR01174 ftsA cell division protein FtsA

Probab=88.08  E-value=1  Score=48.44  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             EEEEecCccceeeEEEc--CCC--CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++||||||+++|+++..  .++  ++++....|..-. ..| .-.|++..-+++.++++++-++++....+ ..+++++.
T Consensus         2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi-~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g~   78 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI-KKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISGA   78 (371)
T ss_pred             EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEccc
Confidence            68999999999999976  344  4445444443211 344 34588888888888888776556654333 34666654

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PLN02405 hexokinase

Probab=88.02  E-value=1.6  Score=48.69  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             CeEEEEecCccceeeEEEcCCC---CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010           55 SVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g---~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~  117 (621)
                      ..|++||+|+||.|++++...|   ..+...+..+++-.  ..-.-..+++|+.+.++|.+.+++.
T Consensus        95 G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~~~~gt~~~LFdfIA~~i~~fl~~~  158 (497)
T PLN02405         95 GLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPP--HLMTGSSDALFDFIAAALAKFVATE  158 (497)
T ss_pred             eeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            4789999999999999999665   24444444444211  1223467889999999999999764

>PLN02596 hexokinase-like

Probab=87.98  E-value=1.5  Score=48.73  Aligned_cols=61  Identities=11%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCC---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~  117 (621)
                      ..||+||+|+||.|+++++..|+   +....+..+++-  .....-..+++|+.+.++|.+.+++.
T Consensus        96 G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip--~~l~~~t~~eLFd~IA~~i~~fl~~~  159 (490)
T PLN02596         96 GLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIP--SNVLNGTSQELFDYIALELAKFVAEH  159 (490)
T ss_pred             eEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCC--hHhhcCCHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999997664   233333333321  11123367889999999999999764

>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]

Probab=87.50  E-value=1.5  Score=48.50  Aligned_cols=80  Identities=15%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH-HHHHHhhCCceeecc--CCCchhHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAIL  558 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~-Qi~Advlg~pV~~~~--~~e~~alGAA~l  558 (621)
                      ...|++...++.+|.+...+.+.+..  +.|  ..+|..+||.+.|=.|+ +++...++..|.+..  ...+.|+|||+.
T Consensus       257 ~~~diAasaQ~~lE~l~l~~~~~~~~--~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~  332 (555)
T COG2192         257 RAADIAASAQAYLEELVLEMLRYLRE--ETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALA  332 (555)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH--HhC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHH
Confidence            45688888889999998866554432  222  67899999999999999 999999998998866  456779999999


Q ss_pred             HHhhccc
Q 007010          559 GAVAAKR  565 (621)
Q Consensus       559 A~~a~G~  565 (621)
                      +..-.+.
T Consensus       333 ~~~~~~~  339 (555)
T COG2192         333 VKRELGG  339 (555)
T ss_pred             HHHHhcC
Confidence            8876544

>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=87.33  E-value=1.3  Score=50.16  Aligned_cols=74  Identities=19%  Similarity=0.301  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec--cCCCchhHHHHHHHHhhccccC
Q 007010          490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP--RENESVLLGAAILGAVAAKRYS  567 (621)
Q Consensus       490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~--~~~e~~alGAA~lA~~a~G~~~  567 (621)
                      +|..+|-+.    ..+....-....+..|+++||.++-|...+++.|.|+-.-...  ...|+.|+|||+.|+.-.|...
T Consensus       314 f~~~~~~v~----~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~  389 (620)
T KOG0101|consen  314 FRSTLEPVE----KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS  389 (620)
T ss_pred             HHHHHHHHH----HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence            446666554    2333222223578899999999999999999999998633322  3578999999999998777543

>PLN02666 5-oxoprolinase

Probab=86.77  E-value=1  Score=55.63  Aligned_cols=86  Identities=10%  Similarity=0.053  Sum_probs=54.6

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHH-HHHHHHHHHHHHHH-----HHcCCCCCCEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSST-DIWHAICAAVDSAC-----SLANVDGEEVKGV  127 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~-~~~~~~~~~l~~~~-----~~~~~~~~~I~aI  127 (621)
                      +.|.||||+|+|-+-++++|.++.-+...+.+...       ..|+. -+.+.+..+++.++     ...++++++|..|
T Consensus         8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~stt-------p~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v   80 (1275)
T PLN02666          8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSVD-------PANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI   80 (1275)
T ss_pred             CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCCC-------CCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence            46899999999999999999766534444544310       13443 35555555555443     2224556678888


Q ss_pred             EEcCC-CceEEecCCCCcee
Q 007010          128 GFAAT-CSLVAVDADGSPVS  146 (621)
Q Consensus       128 gis~~-~~~v~vD~~G~pl~  146 (621)
                      ..+++ .+-.++.++|.++.
T Consensus        81 ~hGTT~atNAllerkGa~v~  100 (1275)
T PLN02666         81 RMGTTVATNALLERKGERIA  100 (1275)
T ss_pred             EEechHHHHHHHhccCCcEE
Confidence            88765 55566777776654

>PTZ00107 hexokinase; Provisional

Probab=86.70  E-value=3.1  Score=46.04  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=42.4

Q ss_pred             CeEEEEecCccceeeEEEcCCCC-EEEEEEeee--ccccCCC---c--cccCHHHHHHHHHHHHHHHHHHc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPI--QIWKEGD---C--IEQSSTDIWHAICAAVDSACSLA  117 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~-vv~~~~~~~--~~~~~~g---~--~eqd~~~~~~~~~~~l~~~~~~~  117 (621)
                      ..+|+||+|+||.|++++...|+ .....+..+  |...-.|   .  -+...+++|+.+.++|.+.+++.
T Consensus        74 G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~  144 (464)
T PTZ00107         74 GVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEEN  144 (464)
T ss_pred             ceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999997654 332333233  2111111   1  12267899999999999999764

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=86.69  E-value=2.7  Score=43.28  Aligned_cols=57  Identities=7%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      .+|||+|+|-+|.+..|.+++++......           ++.+++.+.    +++.....    ..+..|.+|+-
T Consensus         2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~~~-----------~~~~~~~~~----l~~~~~~~----~~~~~i~~TGg   58 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEPKGRRKFKTFET-----------TNIDKFIEW----LKNQIHRH----SRITTLCATGG   58 (279)
T ss_pred             eEEEEeCcceEEEEEEcCCCcEEEEEeec-----------ccHHHHHHH----HHHHHHhh----cCceEEEEECC
Confidence            58999999999999999999887543322           344444443    33332221    34677888875

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=86.62  E-value=1.8  Score=43.49  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=33.2

Q ss_pred             EEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHH
Q 007010           59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA  113 (621)
Q Consensus        59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~  113 (621)
                      ||||||+++|+++.+.+++.++....  +... ..| .-.|.+.....+..+++.+
T Consensus         1 g~dig~~~ik~v~~~~~~~~~~~~~~--~~~~~~~g-~I~d~~~~~~~l~~l~~~a   53 (239)
T TIGR02529         1 GVDLGTANIVIVVLDEDGQPVAGVMQ--FADVVRDG-IVVDFLGAVEIVRRLKDTL   53 (239)
T ss_pred             CCCcccceEEEEEEecCCCEEEEEec--ccccccCC-eEEEhHHHHHHHHHHHHHH
Confidence            79999999999999977765444433  3222 233 3457766666555555443

>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12

Probab=86.37  E-value=1.7  Score=44.70  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC--CCCCH-HHHHHHHHhhCCceeeccCCCchhHHHHHHHHh
Q 007010          490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAV  561 (621)
Q Consensus       490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG--ga~s~-~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~  561 (621)
                      ++++.|++++.+.-.+-.  +  .+..+|+++|.  ..+.+ .+...+.+.|+.+|.+... +.+|.|+|++|.-
T Consensus       242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d  311 (326)
T TIGR03281       242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED  311 (326)
T ss_pred             HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence            579999999877655432  1  23448999997  77888 9999999999999999875 7779999999853

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=86.34  E-value=0.58  Score=49.32  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             EEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHHH
Q 007010          517 TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL  558 (621)
Q Consensus       517 ~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~l  558 (621)
                      -|+++||+|.-+-+-+.+++-+++||.+.+.++ +.+.|+..+
T Consensus       276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~  318 (326)
T PF06723_consen  276 GIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL  318 (326)
T ss_dssp             -EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred             CEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence            499999999999999999999999999988665 557787654

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=86.32  E-value=3.9  Score=43.38  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             CeEEEEecCccceeeEEEcCC-C--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~-g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      ..++|||||++++|++.+... +  +++.....+.|... ..|. -.|++.+-    ++|++++++.+.... -..+++.
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~----~~l~~~~~~~~~~~k-~v~~alp   76 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVA----EALKELLSELGINTK-KAATAVP   76 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHH----HHHHHHHHHcCCCcc-eEEEEec
Confidence            468999999999999999843 3  44455555665322 3332 34665554    555555555554332 2456665


Q ss_pred             CC
Q 007010          131 AT  132 (621)
Q Consensus       131 ~~  132 (621)
                      +.
T Consensus        77 ~~   78 (348)
T TIGR01175        77 GS   78 (348)
T ss_pred             CC
Confidence            54

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=86.17  E-value=1.7  Score=45.06  Aligned_cols=59  Identities=14%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC
Q 007010          489 LYLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE  547 (621)
Q Consensus       489 ~~rAvlEgia~~~r~~l~~l~~~--g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~  547 (621)
                      ..+-+++.+.-.+++.++-+...  ...+++|+++||+++-.-+-+.+.+-++.|+.+.+.
T Consensus       260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP  320 (354)
T COG4972         260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP  320 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence            35688999999999999877543  358899999999999999999999999999999653

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=86.07  E-value=2.3  Score=41.03  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC-CCchhHHHHHHH
Q 007010          491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILG  559 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~alGAA~lA  559 (621)
                      +-++|=+|--.+.+++     +.+++.++++||.+.-+-.-.++-.-|+.+|+.|.. .-.+.||.|+-.
T Consensus       208 ~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg  272 (277)
T COG4820         208 KPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG  272 (277)
T ss_pred             hHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence            3666666655555554     456889999999999999999999999999999884 457888888654

>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.03  E-value=1.4  Score=50.96  Aligned_cols=76  Identities=25%  Similarity=0.267  Sum_probs=46.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (621)
                      .+.||||+|+|.+-++++|.++.++...+.++.           |+.......+.++.+.....  ..+|..|-++++ .
T Consensus         2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-----------P~~~~~~~~~~~~~~~~~~~--~~~i~~v~~gTT~a   68 (674)
T COG0145           2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-----------PDLPSGIVNAGIRLALELLE--GSEVDLVVHGTTLA   68 (674)
T ss_pred             ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-----------CCchhhHHHHHHHHHhhccc--cccccEEEEeccHH
Confidence            578999999999999999987767777666653           33333333334433332211  135666666655 4


Q ss_pred             ceEEecCCCC
Q 007010          134 SLVAVDADGS  143 (621)
Q Consensus       134 ~~v~vD~~G~  143 (621)
                      +-.++.+.|.
T Consensus        69 TNallerkG~   78 (674)
T COG0145          69 TNALLERKGL   78 (674)
T ss_pred             HHHHHhccCc
Confidence            4445555555

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.82  E-value=2.4  Score=42.19  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      ..++|||-|||.+|.+++|.++.+..+-.+          .|.  ...  +=.+.++++-..+++..++|.-|+++.
T Consensus         3 m~fVGiDHGTsgi~~ai~d~e~~~~Fklgr----------ae~--~~~--~ek~~L~~l~de~~i~l~eidlialtY   65 (332)
T COG4020           3 MMFVGIDHGTSGIKFAIYDGEKDPEFKLGR----------AEL--RKV--AEKSLLRELEDEARIALEEIDLIALTY   65 (332)
T ss_pred             eEEEeecCCCcceEEEEEcCCCCceEEech----------hhh--hhh--hHHHHHHHhhHhhCCccccceEEEEee
Confidence            368999999999999999987765432111          110  000  013445555555567778999999985

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=85.29  E-value=3.5  Score=43.72  Aligned_cols=78  Identities=13%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCC-Cccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~-g~~e-qd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (621)
                      .+||||--+..+-++++|.+|+++........ .... |-.. .....=.+.+..++++++++++....+|.+|++|...
T Consensus         2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GP   80 (345)
T PTZ00340          2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP   80 (345)
T ss_pred             eEEEEEccchhhEEEEEECCCcEEEEEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            58999999999999999977888876554332 1111 3222 2223335567778888888888888999999998765


Q ss_pred             c
Q 007010          134 S  134 (621)
Q Consensus       134 ~  134 (621)
                      |
T Consensus        81 G   81 (345)
T PTZ00340         81 G   81 (345)
T ss_pred             C
Confidence            5

>PRK13326 pantothenate kinase; Reviewed

Probab=85.18  E-value=2.7  Score=42.91  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHH
Q 007010          492 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG  559 (621)
Q Consensus       492 AvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA  559 (621)
                      .++-|.+..+..+++.+++. +. .-.|+++||.++      +++..+..+..+  .++-+..|-.++.
T Consensus       194 Gi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a~------~l~~~~~~~~~~--~~~LvL~GL~~i~  253 (262)
T PRK13326        194 GVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNSN------LILPLISVDFIF--NLYLTLEGIRILG  253 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCCCcEE--CcccHHHHHHHHH
Confidence            56666667777777777653 32 336999999654      667777777666  3566666766553

>PRK09604 UGMP family protein; Validated

Probab=85.14  E-value=2.3  Score=44.98  Aligned_cols=79  Identities=16%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeee-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~-~~~~-~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++||||-.+..+-++++|.+++++....... .... ..|.. +.....=-+.+...+++++++.+.++.+|.+|+++..
T Consensus         2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~G   81 (332)
T PRK09604          2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG   81 (332)
T ss_pred             eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence            5899999888889999987768887655332 1121 22221 1222333456677788888888888899999999765


Q ss_pred             Cc
Q 007010          133 CS  134 (621)
Q Consensus       133 ~~  134 (621)
                      +|
T Consensus        82 PG   83 (332)
T PRK09604         82 PG   83 (332)
T ss_pred             CC
Confidence            43

>PRK03011 butyrate kinase; Provisional

Probab=84.99  E-value=2.5  Score=45.25  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc-CC--CchhHHHH
Q 007010          491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-EN--ESVLLGAA  556 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~-~~--e~~alGAA  556 (621)
                      +.++|-.++.+...+-.+.. .+.+++.|+++||.+.++.+++.+-+-+.  .||.+.. ..  ++.++||+
T Consensus       271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~  342 (358)
T PRK03011        271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL  342 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence            47888888888877766654 33468999999999988888776666554  3665543 33  35566654

>PRK14878 UGMP family protein; Provisional

Probab=84.91  E-value=3.1  Score=43.92  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~e-qd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      ||||--+.-+-++++| +++++......+. ....|... .-...-.+.+...++++++++++++.+|.+|+++...+
T Consensus         1 l~iets~~~~s~al~~-~~~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG   76 (323)
T PRK14878          1 LGIESTAHTLGVGIVK-EDKVLANVRDTYV-PEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG   76 (323)
T ss_pred             CEEecCCcccEEEEEE-CCEEEEEEEEecc-cCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence            5899888888899998 4557766655431 11233322 12223344566788888888888889999999976543

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=84.11  E-value=6.3  Score=42.97  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE  547 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~  547 (621)
                      ++..+.++.+|-+|-+..-++.-++........+..|.++||+++-+-...+..++|++||++...
T Consensus       288 t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P  353 (418)
T COG0849         288 TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP  353 (418)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence            456677777787777766665444433221235678999999999999999999999999988554

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=83.59  E-value=2.2  Score=49.84  Aligned_cols=75  Identities=21%  Similarity=0.321  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC---Cceeecc----CCCchhHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLG  554 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg---~pV~~~~----~~e~~alG  554 (621)
                      .+.+++.   ++.+.++-.+.+.++.+.+. ..+++|.++||.++|..+++.+.+.++   ..|..+.    ...+.++|
T Consensus       630 ~~~~IAa---~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislG  705 (711)
T TIGR00143       630 DRSKIAH---IAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLG  705 (711)
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHH
Confidence            3455543   77777776666666555432 246789999999999999999998874   6776543    34566888


Q ss_pred             HHHHHH
Q 007010          555 AAILGA  560 (621)
Q Consensus       555 AA~lA~  560 (621)
                      .|++|+
T Consensus       706 Qa~~a~  711 (711)
T TIGR00143       706 QAVAAA  711 (711)
T ss_pred             HHHHhC
Confidence            887763

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=83.26  E-value=5.7  Score=41.72  Aligned_cols=70  Identities=16%  Similarity=0.168  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHH-HHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccCCCchhHHHHHHHHhhc
Q 007010          491 LATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAA  563 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~-l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~~e~~alGAA~lA~~a~  563 (621)
                      .+..|.+.-.+.+..+. ++.  ...+++.++||.+.|..+++++..+.   |..++.++. +-+.==+||+|..|.
T Consensus       239 ~sfQ~av~~~L~~kt~rAl~~--~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~-~lCtDNaaMIA~ag~  312 (342)
T COG0533         239 ASFQEAVFDMLVEKTERALKH--TGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL-ELCTDNAAMIAYAGL  312 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh-HhccchHHHHHHHHH
Confidence            36655555444443332 222  35678999999999999999999976   445766552 222223456665544

>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]

Probab=82.73  E-value=1.8  Score=43.94  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             CCCCeEEEEecCccceeeEEEcCCCCEEEEEEee
Q 007010           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP   85 (621)
Q Consensus        52 m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~   85 (621)
                      |+..+++.||=||||.|+-+++.+|+++.+.+-.
T Consensus         2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~   35 (306)
T COG3734           2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE   35 (306)
T ss_pred             CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence            5557899999999999999999999988765443

>PRK13320 pantothenate kinase; Reviewed

Probab=82.35  E-value=4.1  Score=41.12  Aligned_cols=58  Identities=19%  Similarity=0.191  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHH
Q 007010          492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL  558 (621)
Q Consensus       492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~l  558 (621)
                      .++-|.+..+..+++.+++.-.+ -.|+++||.++      ++++.+..++..  .++-...|-..+
T Consensus       182 G~~~~~~~~i~~~i~~~~~~~~~-~~vi~TGG~a~------~l~~~l~~~~~~--~p~Lvl~GL~~~  239 (244)
T PRK13320        182 GVVWGCVAEIEGLIEAYKSKLPE-LLVILTGGDAP------FLASRLKNTIFA--DEHAVLKGLNRI  239 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHH------HHHHhcCCccEE--CcchHHHHHHHH
Confidence            45555555555666666553212 47999999865      566667777655  355556665544

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=82.34  E-value=4.5  Score=42.92  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             EEecCccceeeEEEcCCCC---EEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           59 GVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        59 gIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      |||||+.++|++-++..++   +......++|.-. .+| .-.|++.+-++    |++++++.+.. .+-..+++.+.
T Consensus         1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~----L~~~~~~~~~~-~k~v~~aip~~   72 (340)
T PF11104_consen    1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEA----LKELLKENKIK-GKKVVLAIPGS   72 (340)
T ss_dssp             EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHH----HHHHHHHHT-----EEEEEE-GG
T ss_pred             CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHH----HHHHHHHcCCC-CCeEEEEeCCC
Confidence            8999999999999996543   4455666666322 222 23567666555    55555544442 33445777554

>PRK13331 pantothenate kinase; Reviewed

Probab=82.27  E-value=3.8  Score=41.49  Aligned_cols=59  Identities=14%  Similarity=0.165  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCc-------eeeccCCCchhHHHHHHH
Q 007010          492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCP-------IILPRENESVLLGAAILG  559 (621)
Q Consensus       492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~p-------V~~~~~~e~~alGAA~lA  559 (621)
                      .++-|.+..+..+++.+++.-. .-.|+++||.++      ++++.+..+       ..+  .++-+..|-..++
T Consensus       182 Gi~~g~~g~i~~~i~~~~~~~~-~~~vi~TGG~a~------~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i~  247 (251)
T PRK13331        182 GVIYTILAGLRDFIEDWLSLFP-DGKIVLTGGDGE------LLHNYLQDLDPELAQRLRV--DPNLIFWGIAAIR  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCCHH------HHHHHhhccccccccccEE--CcchHHHHHHHHH
Confidence            5666666667777776665321 346999999754      555555543       333  3566666766654

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=81.17  E-value=3.7  Score=43.19  Aligned_cols=76  Identities=20%  Similarity=0.324  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh----CCceeeccC----CCchhHHHHHHHH-
Q 007010          490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII----GCPIILPRE----NESVLLGAAILGA-  560 (621)
Q Consensus       490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl----g~pV~~~~~----~e~~alGAA~lA~-  560 (621)
                      +.|.+|+++-.+...+.   . -.+++.|+++|..++++.+..-+.+.|    +.+|.....    ...+|.|+|++|- 
T Consensus       240 ~ea~~E~i~k~V~~l~~---~-~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g  315 (343)
T PF07318_consen  240 WEAMIESIVKAVASLLA---S-VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG  315 (343)
T ss_pred             HHHHHHHHHHHHHHHhc---c-cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence            56889988866653332   2 236678999999999988876655555    556654432    2347999999984 


Q ss_pred             hhccccCCH
Q 007010          561 VAAKRYSSL  569 (621)
Q Consensus       561 ~a~G~~~s~  569 (621)
                      .+=|.|+.+
T Consensus       316 laGG~~~~l  324 (343)
T PF07318_consen  316 LAGGRYKEL  324 (343)
T ss_pred             hhcccHHHH
Confidence            444665544

The function of this family is unknown.

>TIGR00671 baf pantothenate kinase, type III

Probab=81.00  E-value=4.6  Score=40.77  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=22.1

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEEEeeec
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQ   87 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~   87 (621)
                      |.||+|-|++|.++|+. ++++...+.++.
T Consensus         2 L~iDiGNT~i~~g~~~~-~~~~~~~r~~t~   30 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSG-NKVYQFWRLATN   30 (243)
T ss_pred             EEEEECCCcEEEEEEEC-CEEEEEEEecCC
Confidence            68999999999999984 466665444443

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=80.99  E-value=5.8  Score=44.93  Aligned_cols=76  Identities=22%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++||||--+..+-++|++.+|+++......+. .+.+|.. +.....=.+.+..++++++++++++..+|.+|++|..
T Consensus         2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~g   78 (535)
T PRK09605          2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQG   78 (535)
T ss_pred             EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCC
Confidence            68999999999999999976788877654421 1122321 1112223455677888888888888899999999854

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=80.50  E-value=6.9  Score=41.53  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccC
Q 007010          489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE  547 (621)
Q Consensus       489 ~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~  547 (621)
                      +.+++.|.++-.+.+.++..-+. ..+++|.++||.|.|..+++.+.+.+   +.+++.++.
T Consensus       239 iaasfq~~v~~~L~~k~~~a~~~-~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~  299 (345)
T PTZ00340        239 LCFSLQETIFAMLVEVTERAMSH-CGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDE  299 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCCh
Confidence            34477777776655554433221 35678999999999999999999986   788888763

>COG3426 Butyrate kinase [Energy production and conversion]

Probab=80.28  E-value=7.8  Score=39.49  Aligned_cols=60  Identities=25%  Similarity=0.420  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc-CCCc
Q 007010          491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-ENES  550 (621)
Q Consensus       491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~-~~e~  550 (621)
                      +-++++.+|++..-+-.+.. ...+++.|+++||.|.+..++..+.+-+.  .||.+.. +.|-
T Consensus       272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~El  335 (358)
T COG3426         272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDEL  335 (358)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHH
Confidence            46788889988776665544 45689999999999999999999999865  6777644 4443

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=80.24  E-value=2.5  Score=44.44  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=42.0

Q ss_pred             EEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      |||=||+|...+.+|++|+++...+.|...      +..+|..+.+.+.+.            .++..|+..+-+|
T Consensus         1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~------v~~~p~~iv~~l~~~------------~~~dlIa~psGyG   58 (343)
T PF07318_consen    1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE------VAKNPSIIVEELEEF------------GDIDLIAGPSGYG   58 (343)
T ss_pred             CCCCCCCcEEEEEEccCCcEEEEeeccHHH------hhhCHHHHHHHHHhc------------cCCCEEEeCCcCC
Confidence            799999999999999889999888887753      456776654432222            3567788765444

The function of this family is unknown.

>PRK09604 UGMP family protein; Validated

Probab=80.18  E-value=7.7  Score=41.08  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccC----CCchhHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE----NESVLLGA  555 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~----~e~~alGA  555 (621)
                      +.++++   ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+   |.+|.+++.    +.+.++|+
T Consensus       227 ~~~iA~---s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~  302 (332)
T PRK09604        227 KADIAA---SFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAA  302 (332)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHH
Confidence            456554   66666666665665555432 34678999999999999999999998   888887653    33445555


Q ss_pred             HHHHHhhcc
Q 007010          556 AILGAVAAK  564 (621)
Q Consensus       556 A~lA~~a~G  564 (621)
                      |-+-..-.|
T Consensus       303 ag~~~~~~g  311 (332)
T PRK09604        303 AGYERLKAG  311 (332)
T ss_pred             HHHHHHHcC
Confidence            544333334

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	621
3gg4_A	554	The Crystal Structure Of Glycerol Kinase From Yersi		1e-141
3qdk_A	572	Structural Insight On Mechanism And Diverse Substra		7e-30
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		3e-14
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		2e-13
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		8e-12
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		3e-07
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		3e-07
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		3e-07
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		4e-07
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		9e-07
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		9e-07
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		9e-07
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		9e-07
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		1e-06
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		1e-06
3g25_A	501	1.9 Angstrom Crystal Structure Of Glycerol Kinase (		2e-06
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		1e-05
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		3e-04
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		3e-05
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		7e-04
3hz6_A	511	Crystal Structure Of Xylulokinase From Chromobacter		5e-05
3gbt_A	504	Crystal Structure Of Gluconate Kinase From Lactobac		7e-05
3ifr_A	508	The Crystal Structure Of Xylulose Kinase From Rhodo		2e-04

>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia Pseudotuberculosis Length = 554

Iteration: 1
 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/565 (45%), Positives = 358/565 (63%), Gaps = 25/565 (4%)
Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113
           S F+GVDVGTGSARAG+FD  G+ +G AS  I  +K + D +EQSS +IW A+C AV  A
Sbjct: 5   SYFIGVDVGTGSARAGVFDLQGRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDA 64
Query: 114 CSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
            + A+++  +VKG+GF ATCSLV +D +G+P++VS +G + +N+IVW DHRA+ QAE+IN
Sbjct: 65  VNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWXDHRAITQAERIN 124
Query: 174 SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
           +   PVL++ GG +SPE Q PKLLW+K++   +WS V    DL D+L++RAT D+TRSLC
Sbjct: 125 ATKHPVLEFVGGVISPEXQTPKLLWLKQHXPNTWSNVGHLFDLPDFLTWRATKDETRSLC 184
Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
           +TVCKWTYLGH                  WD  +++ +GL DL+D + AKIG +V   G 
Sbjct: 185 STVCKWTYLGHEDR---------------WDPSYFKLVGLADLLDNNAAKIGATVKPXGA 229
Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXXICHRMV 353
           PLG GL+  AA E GL+PGT V  S+IDAHAG +G++ +                  R+ 
Sbjct: 230 PLGHGLSQRAASEXGLIPGTAVSVSIIDAHAGTIGILGA------SGVTGENANFDRRIA 283
Query: 354 LVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVXXXX 413
           L+ GTST H A SR+  FI G+WGP++SA++P++WL EGGQSATGAL+D+II++H     
Sbjct: 284 LIGGTSTAHXAXSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343
Query: 414 XXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 473
                     +++E LN  L     E  +  +A LT DIH LP FHGNRSP A+P   GI
Sbjct: 344 LLEQAKNKGETIYEALNYILRQXAGEPEN--IAFLTNDIHXLPYFHGNRSPRANPNLTGI 401
Query: 474 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 533
           I G+ L ++ +  AL YLAT+Q +A GTRHI+E  N +G+ IDT  A GG  KNP+F+Q+
Sbjct: 402 ITGLKLSTTPEDXALRYLATIQALALGTRHIIETXNQNGYNIDTXXASGGGTKNPIFVQE 461
Query: 534 HADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 593
           HA+  GC  +LP E+E+               + SL EA  A +  G+ + P  + K+K 
Sbjct: 462 HANATGCAXLLPEESEAXLLGSAXXGTVAAGVFESLPEAXAAXSRIGKTVTPQTN-KIKA 520
Query: 594 YHDAKYLIFRELFEQQVSQRSIMAQ 618
           Y+D KY +F + +      +++  +
Sbjct: 521 YYDRKYRVFHQXYHDHXRYQALXQE 545

>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate Selection Strategy Of Ribulokinase Length = 572

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 213/506 (42%), Gaps = 66/506 (13%)
Query: 58  LGVDVGTGSARAGLFDES-GKLLGSASSP-----IQIWKEGDCIE-------QSSTDIWH 104
           +GVD GT S RA L D S G+ L    +P     I  +     I+       Q   D   
Sbjct: 8   IGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVE 67
Query: 105 AICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSV--SWNGDSRRNIIVWM 161
            +  +V +    + VD ++V G+G   T C+++ VD +G P+ +   +  +    + +W 
Sbjct: 68  VLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWK 127
Query: 162 DHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 217
            H A  +A  IN     R    L   GG +S E    K+  + +  ++ ++   ++++ +
Sbjct: 128 HHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEAT 187
Query: 218 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLI 277
           DW+  + TG   ++ CT   K  +           +G+   E     D   E +    L 
Sbjct: 188 DWIVSQMTGKIVKNSCTAGYKAIW--------HKREGYPSNEFFKALDPRLEHLTTTKL- 238
Query: 278 DGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXX 337
                   R    P      GL P  A+++GL PG  V    +DAHA    V  + P   
Sbjct: 239 --------RGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPG-- 288
Query: 338 XXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSAT 397
                        ++V+  GTS CHM +   +  + G+ G     ++P +   E GQSA 
Sbjct: 289 -------------KLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAV 335
Query: 398 GALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPD 457
           G +  + ++ H              V++  LL     S +    S  +A        L  
Sbjct: 336 GDIFAWFVK-HGVSAATFDEAQEKGVNVHALLEEK-ASQLRPGESGLLA--------LDW 385
Query: 458 FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT 517
           ++GNRS + D +  G++ G TL +  ++   +Y A ++  A+GTR IV+  +  G ++  
Sbjct: 386 WNGNRSILVDTELSGMLLGYTLQTKPEE---IYRALLEATAFGTRAIVDAFHGRGVEVHE 442
Query: 518 LLACGGL-AKNPLFLQQHADIIGCPI 542
           L ACGGL  KN L +Q  AD+    I
Sbjct: 443 LYACGGLPQKNHLLMQIFADVTNREI 468

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 193/513 (37%), Gaps = 98/513 (19%)
Query: 58  LGVDVGTGSARAGLFDESGKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD SG++  +      QI+     +E +   IW+ +   V  A + 
Sbjct: 5   LAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR 64
Query: 117 ANVDGEEVKGVGFAAT--CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
            N+  E++  VG       ++V     G PV          N IVW D R  K  +++  
Sbjct: 65  GNLTHEDIAAVGITNQRETAVVWDKTTGKPV---------YNAIVWQDTRTQKIVDELGG 115
Query: 175 RN--SPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATG 226
                      G  ++     PK+ W+ +N++      E   ++F   D   W+ +  TG
Sbjct: 116 DEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDT--WVLWNMTG 173
Query: 227 DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG--LGDLIDGHHAKI 284
                +  T           +   +     D++   W ++   ++G  L  L D     I
Sbjct: 174 GTEGGVHVT----------DVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPD-----I 218
Query: 285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXX 344
             S    GH           +  GLVPG P+   L D  A   G                
Sbjct: 219 RSSSEVYGH----------GRPRGLVPGVPIAGILGDQQAATFG-----QACFEVGQAKN 263
Query: 345 XXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 404
                + ++L  GT      +S+N L        +     P  +  EG  + TG+L+ ++
Sbjct: 264 TYGTGNFLLLNTGTEKV---MSKNGLLTTVC---YKIGDAPAVYALEGSIAVTGSLVQWL 317
Query: 405 IENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDI------HVLPDF 458
            +N               + +FE             ++P V  L   +      + +P F
Sbjct: 318 RDN---------------LGMFE-------------DAPDVEWLAGKVQDNGGAYFVPAF 349
Query: 459 HGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT 517
            G  +P   P ++G + G+T   +   +A    A ++  A+ +R +V+  NA  G  +  
Sbjct: 350 SGLFAPYWRPDARGALVGLTRYVNRNHIA---RAALEATAFQSREVVDAMNADSGVDLTE 406
Query: 518 LLACGGLAKNPLFLQQHADIIGCPIILPRENES 550
           L   GG+  N L +Q  AD +G  ++ P+  E+
Sbjct: 407 LRVDGGMVANELLMQFQADQLGVDVVRPKVAET 439

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 184/503 (36%), Gaps = 89/503 (17%)
Query: 58  LGVDVGTGSARAGLFDESGKL--LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           L +D GT SARA +FD    +  +G    P Q +     +E +  +IW A   A+  A  
Sbjct: 6   LSLDEGTTSARAIIFDRESNIHGIGQYEFP-QHYPRPGWVEHNPEEIWDAQLRAIKDAIQ 64
Query: 116 LANVDGEEVKGVGFAATCSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
            A ++  ++  +G         V D DG P+          N IVW   R  +  E+I  
Sbjct: 65  SARIEPNQIAAIGVTNQRETTLVWDKDGKPLY---------NAIVWQCRRTAEMVEEIKR 115
Query: 175 RNSPVLQYCGGAV-SPEMQPPKLLWVKENL------QESWSMVFRWMDLSDWLSYRATGD 227
               +++   G V        KL W+ +N+       E   ++F  +D   +L YR TG+
Sbjct: 116 EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDT--FLIYRLTGE 173
Query: 228 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287
                        Y   +     N      ++   WDDE  E   L D+ +    ++  S
Sbjct: 174 HVTD---------YSNASRTMLFN------IKKLDWDDELLE---LFDIPESVLPEVRES 215
Query: 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXX 347
               G+           KEL L    PV     D  A   G                   
Sbjct: 216 SEVYGY---------TKKEL-LGAEIPVSGDAGDQQAALFG------QAAFEAGMVKATY 259
Query: 348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 407
                +LV   +T  M +  + L     WG   +  V   +  EG    TGA + ++ + 
Sbjct: 260 GTGSFILV---NTDKMVLYSDNLLTTIAWGL--NGRVS--YALEGSIFVTGAAVQWLRDG 312
Query: 408 HVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
                         H S  E L   LES              E ++ +P F G  +P  D
Sbjct: 313 ---------IKIIKHASETEELATKLES-------------NEGVYFVPAFVGLGAPYWD 350
Query: 468 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 527
             ++GII G+T  +  + LA    AT++ IAY TR +V+       +I  L   GG   N
Sbjct: 351 QFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEMEKL-VQIKELRVDGGATAN 406
Query: 528 PLFLQQHADIIGCPIILPRENES 550
              +Q  ADI+   +I P   E+
Sbjct: 407 DFLMQFQADILNRKVIRPVVKET 429

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T D++ +P F G  +P  DP ++G + G+T  +S   LA    A ++G+A+  R +V   
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAM 391
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 550
               G ++  L A GG+A+N LFL+  AD++G P+ +P   E+
Sbjct: 392 EEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTET 434

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 549
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 549
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 549
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 549
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 410
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 411 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 470
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 471 DE-LKSMAEEGQMFTP 485

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 393
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 394 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 453
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 454 DE-LKSMAEEGQMFTP 468

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397
Query: 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 569
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457
Query: 570 IEAMKAMNAAGQVIHP 585
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472

>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           TE ++V+P F G  +P  D +++G I G+T  + ++       AT++ + Y TR + E  
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFI---RATLESLCYQTRDVXEAX 397
Query: 509 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 550
           +   G  + +L   GG  KN    Q  ADI+   +  P   E+
Sbjct: 398 SKDSGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVERPEIQET 440

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 56  VFLGVDVGTGSARAGLFDESGKLLG------SASSPIQIWKEGDCIEQSSTDIWHAICAA 109
           +++G+D+GT   +  L +E G+++       + S P  +W E     Q     W A   A
Sbjct: 1   MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE-----QDPEQWWQATDRA 55
Query: 110 VDSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 168
           + +     ++  ++VK +G A        +DA    +         R  I+W D R  ++
Sbjct: 56  MKALGDQHSL--QDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQE 104
Query: 169 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 227
              + +R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+
Sbjct: 105 CTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGE 163

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 450 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509
           E +  LP   G R+P  +P++KG+  G+T      +LA    A ++G+ Y     ++  +
Sbjct: 325 EPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVH 381
Query: 510 AHGHKIDTLLACGGLAKNPLFLQQHADIIG 539
           A G K  ++   GG A++  + Q  ADI G
Sbjct: 382 ACGIKPQSVTLIGGGARSEYWRQMLADISG 411

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +D GT S RA +FD + K+ G       Q + +   +E    +IW  + + V  A  
Sbjct: 28  ILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIE 87
Query: 116 LANVDGEEVKGVGFAATCSLVAV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
            + +   ++  +G       V V     G P+          N IVW D R     +K+ 
Sbjct: 88  KSGITANDIAAIGITNQRETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKLK 138
Query: 174 SR--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ 204
            +      ++  G  + P     KL W+  N++
Sbjct: 139 KKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVK 171

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 506
           +++++++P F G  +P  DP ++G I G T ++   + A    A ++ + Y TR ++E  
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFA---RAALEAVCYQTRDLLEAX 416
Query: 507 HCNAHGHKIDTLLAC-GGLAKNPLFLQQHADIIGCPIILP 545
           H +   +  DT+L   GG   +    Q+ +D++  P+  P
Sbjct: 417 HKDWRRNGNDTVLRVDGGXVASDWTXQRLSDLLDAPVDRP 456

>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium Violaceum Length = 511

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 44/280 (15%)
Query: 61  DVGTGSARAGLFDESGKLLGSASSPIQIWKEGDC-IEQSSTDIWHAICAAVDSACSLANV 119
           D+GT   +A L D  G L    S  ++ + +G+  +EQ + D W+     + S+   + V
Sbjct: 11  DIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGD-WYDAVQRIASSWWQSGV 69
Query: 120 DGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSP 178
           D   V  +  +    + + +D D  P+            +++ D R +K+AE+IN+R+  
Sbjct: 70  DARRVSAIVLSGQXQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGA 120
Query: 179 -----VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
                 L+    A S  + P  + W     Q    +    +   D++  R TG       
Sbjct: 121 DNLWSALENPXTAAS--ILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATDRT 178
Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
                  Y                       D+ W    L D   G    +   +  PG 
Sbjct: 179 NASTTGLYRPK--------------------DDAWHVELLADY--GFSLDLXPRLLEPGE 216
Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVME 331
            +G G++  AA++ G V GTPV   L DA A   GVGV++
Sbjct: 217 QVG-GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLD 255

>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASS--PIQIWKEGDCIEQSSTDIWHAICAAV 110
           S    +G DVGT + +  L+D +GK + S S   P+   K G   E+    I+ A+   +
Sbjct: 2   SLKYIIGXDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQA-EEDPKLIFDAVQEII 60
Query: 111 DSACSLANVDGEEVKGVGFAATC-SLVAVDADGSPVSVSWNGDSRRNIIVWMDH--RAVK 167
                   +DG+ +  + +++   SL+ + +D   ++         N I W D+  +++ 
Sbjct: 61  FDLTQ--KIDGK-IAAISWSSQXHSLIGLGSDDELLT---------NSITWADNCAKSIV 108
Query: 168 QAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG 226
           Q  K       + +  G    P     KLLW+K    E +S   +W+ + +++ +R TG
Sbjct: 109 QDAKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTG 167

>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 383 MVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNS 442
           +VP  +   G  +ATG+ L+++ +                    E  +  L+++  E   
Sbjct: 290 LVPGLYAPNGCXAATGSALNWLAKLLAPEAG-------------EAAHAQLDALAAE--- 333
Query: 443 PFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTR 502
             V A  + +  LP F G ++PI DP + G   G++L  +      L+ A ++ +A   R
Sbjct: 334 --VPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGH---LWRALLEAVALAFR 388
Query: 503 HIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXX 562
           H V   +  GH      A  G  ++ ++    AD++  P+ L   N              
Sbjct: 389 HHVAVLDDIGHAPQRFFASDGGTRSRVWXGIXADVLQRPVQL-LANPLGSAVGAAWVAAI 447
Query: 563 XKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELF 606
                   + + A+   G+ I P  DP   + +D  Y  F  L+
Sbjct: 448 GGGDDLGWDDVTALVRTGEKITP--DPAKAEVYDRLYRDFSALY 489

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	621
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	0.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	0.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	9e-92
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	2e-81
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	5e-80
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	5e-71
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	4e-68
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	3e-47
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	1e-42
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	3e-13
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	5e-05
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	3e-13
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	5e-05
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	4e-13
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	5e-05
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	5e-13
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	2e-05
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	1e-12
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	6e-05
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	2e-12
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	2e-05
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	2e-12
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	3e-05
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	4e-12
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	5e-05
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1z05_A	429	Transcriptional regulator, ROK family; structural	2e-05
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	4e-05
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	6e-05
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	2e-04
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	2e-04
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	5e-04
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	8e-04

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score =  659 bits (1702), Expect = 0.0
 Identities = 270/566 (47%), Positives = 394/566 (69%), Gaps = 25/566 (4%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113
           S F+GVDVGTGSARAG+FD  G+++G AS  I ++K + D +EQSS +IW A+C AV  A
Sbjct: 5   SYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64

Query: 114 CSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 173
            + A+++  +VKG+GF ATCSLV +D +G+P++VS +G + +N+IVWMDHRA+ QAE+IN
Sbjct: 65  VNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERIN 124

Query: 174 SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 233
           +   PVL++ GG +SPEMQ PKLLW+K+++  +WS V    DL D+L++RAT D+TRSLC
Sbjct: 125 ATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFLTWRATKDETRSLC 184

Query: 234 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293
           +TVCKWTYLGH                  WD  +++ +GL DL+D + AKIG +V   G 
Sbjct: 185 STVCKWTYLGHED---------------RWDPSYFKLVGLADLLDNNAAKIGATVKPMGA 229

Query: 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMV 353
           PLG GL+  AA E+GL+PGT V  S+IDAHAG +G++ +   +   A          R+ 
Sbjct: 230 PLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANF------DRRIA 283

Query: 354 LVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRS 413
           L+ GTST HMA+SR+  FI G+WGP++SA++P++WL EGGQSATGAL+D+II++H    +
Sbjct: 284 LIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343

Query: 414 LANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 473
           L  +A ++  +++E LN  L  M  E  +  +A LT DIH+LP FHGNRSP A+P   GI
Sbjct: 344 LLEQAKNKGETIYEALNYILRQMAGEPEN--IAFLTNDIHMLPYFHGNRSPRANPNLTGI 401

Query: 474 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 533
           I G+ L ++ + +AL YLAT+Q +A GTRHI+E  N +G+ IDT++A GG  KNP+F+Q+
Sbjct: 402 ITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQE 461

Query: 534 HADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 593
           HA+  GC ++LP E+E++LLG+A++G VAA  + SL EAM AM+  G+ + P  + K+K 
Sbjct: 462 HANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTN-KIKA 520

Query: 594 YHDAKYLIFRELFEQQVSQRSIMAQA 619
           Y+D KY +F +++   +  +++M + 
Sbjct: 521 YYDRKYRVFHQMYHDHMRYQALMQEG 546

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score =  291 bits (748), Expect = 9e-92
 Identities = 102/561 (18%), Positives = 190/561 (33%), Gaps = 87/561 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
            +G+D+GT S  A L      ++  AS P  +        E+     W    A +    +
Sbjct: 9   VIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKT 68

Query: 116 LANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
            A        G+       ++V +D  G+ +         R  I   D R   +  ++ +
Sbjct: 69  TAGESDWRPGGICVTGMLPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAELRA 119

Query: 175 RNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DT 229
                  L   G  V+ ++   KL W++ +    +  +       D+++   TG+   D 
Sbjct: 120 EVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINMLLTGERVVDR 179

Query: 230 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289
                                   GF D+ +   + +      +        + +  +  
Sbjct: 180 NWALEG------------------GFIDLASGTVEADLVALAHIPP------SAVPPAHP 215

Query: 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEEEA 347
                LG  +T  AA   GL  G PV     D  A     G+                  
Sbjct: 216 -THRVLG-AVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRP--------------- 258

Query: 348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 407
               ++L  G +   +  S      P ++      +VP  +   G  +ATG+ L+++ + 
Sbjct: 259 --GDVLLKFGGAGDIIVASATAKSDPRLY--LDYHLVPGLYAPNGCMAATGSALNWLAKL 314

Query: 408 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
                     A     +    L+              V A  + +  LP F G ++PI D
Sbjct: 315 L---------APEAGEAAHAQLDALAAE---------VPAGADGLVCLPYFLGEKTPIHD 356

Query: 468 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 527
           P + G   G++L  +      L+ A ++ +A   RH V   +  GH      A  G  ++
Sbjct: 357 PFASGTFTGLSLSHTR---GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRS 413

Query: 528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSK 587
            +++   AD++  P+ L        +GAA + A+         + + A+   G+ I P  
Sbjct: 414 RVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGDDLGW-DDVTALVRTGEKITP-- 470

Query: 588 DPKVKKYHDAKYLIFRELFEQ 608
           DP   + +D  Y  F  L+  
Sbjct: 471 DPAKAEVYDRLYRDFSALYAT 491

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score =  264 bits (677), Expect = 2e-81
 Identities = 106/573 (18%), Positives = 206/573 (35%), Gaps = 102/573 (17%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
               D+GT   +A L D  G L    S  ++ +      +EQ + D + A+      +  
Sbjct: 7   IATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIAS-SWW 65

Query: 116 LANVDGEEVKGVGF-AATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
            + VD   V  +       + + +D D  P+            +++ D R +K+AE+IN+
Sbjct: 66  QSGVDARRVSAIVLSGQMQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINA 116

Query: 175 RNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM-DLSDWLSYRATGD---D 228
           R+    +       ++     PKL++ + +  +++  +   +    D++  R TG    D
Sbjct: 117 RHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATD 176

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGDLIDGHHAK 283
             +  TT                  G    +   W  E   + G     +  L++     
Sbjct: 177 RTNASTT------------------GLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQ- 217

Query: 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAK 341
           +G            G++  AA++ G V GTPV   L DA A   GVGV++          
Sbjct: 218 VG------------GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDD--------- 256

Query: 342 ENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS--AMVPKFWLTEGGQSATGA 399
                       L  GT+     +++         G  +    ++    L        G 
Sbjct: 257 --------EDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGN 308

Query: 400 LLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH 459
           +L + +        + +R        F +    ++             + + +  +P  H
Sbjct: 309 ILQWALTL------VGHRPGEDCAEYFHMAAAEVQ----------GVTVPDGLLFVPYLH 352

Query: 460 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLL 519
             R P+  P  +G + G+T  ++    A + LA ++G A   R   E       K+  L 
Sbjct: 353 AERCPVELPAPRGALLGVTGATT---RAQILLAVLEGAALSLRWCAEL--LGMEKVGLLK 407

Query: 520 ACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGAVAAKRYSSLIEAMKA--- 575
             GG A++  +L+  AD +   +++  +     L G A L AV  +   S+ + ++    
Sbjct: 408 VVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADL 467

Query: 576 MNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608
              A  ++HP   P  +     K+  F++  E 
Sbjct: 468 REPASNILHP--QPCDEGRRRRKFERFKQCVET 498

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score =  260 bits (666), Expect = 5e-80
 Identities = 118/569 (20%), Positives = 204/569 (35%), Gaps = 94/569 (16%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACS 115
           ++G+D+GT   +  L +E G+++ + +  + + +      EQ     W A   A+ +   
Sbjct: 2   YIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL-- 59

Query: 116 LANVDGEEVKGVGF-AATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
                 ++VK +G          +DA    +         R  I+W D R  ++   + +
Sbjct: 60  GDQHSLQDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQECTLLEA 110

Query: 175 RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DTRS 231
           R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+   D   
Sbjct: 111 RVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSD 170

Query: 232 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291
              T                   + D+    W D   +   L         ++       
Sbjct: 171 AAGT------------------MWLDVAKRDWSDVMLQACDL------SRDQMPALYE-G 205

Query: 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEEEAIC 349
               G  L P  AK  G+    PV     D  AG  GVG++++                 
Sbjct: 206 SEITG-ALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDA----------------- 246

Query: 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 409
           ++ +L  GTS  + AVS   L  P      +   +P+ W       +  + LD+      
Sbjct: 247 NQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWA----- 301

Query: 410 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 469
               L   +          L    +               E +  LP   G R+P  +P+
Sbjct: 302 --AKLTGLSN------VPALIAAAQQ---------ADESAEPVWFLPYLSGERTPHNNPQ 344

Query: 470 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 529
           +KG+  G+T          L  A ++G+ Y     ++  +A G K  ++   GG A++  
Sbjct: 345 AKGVFFGLTHQHG---PNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEY 401

Query: 530 FLQQHADIIGCPIILPRENE-SVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 588
           + Q  ADI G  +      +    LGAA L  +AA    SLIE +  +    Q   P  D
Sbjct: 402 WRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQLPLE-QSHLP--D 458

Query: 589 PKVKKYHDAKYLIFRELFEQQVSQRSIMA 617
            +    +  +   FR L++Q      +MA
Sbjct: 459 AQRYAAYQPRRETFRRLYQQ---LLPLMA 484

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score =  237 bits (606), Expect = 5e-71
 Identities = 105/576 (18%), Positives = 193/576 (33%), Gaps = 113/576 (19%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVD 111
           S    +G+DVGT + +  L+D +GK + S S     I  +    E+    I+ A+   + 
Sbjct: 2   SLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIF 61

Query: 112 SACSLANVDGEEVKGVGF-AATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170
                      ++  + + +   SL+ + +D   +          N I W D+ A    +
Sbjct: 62  DLTQKI---DGKIAAISWSSQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQ 109

Query: 171 KINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG-- 226
              +R     + +  G  + P     KLLW+K    E +S   +W+ + +++ +R TG  
Sbjct: 110 DAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTGKL 169

Query: 227 --DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGDLIDG 279
             D T +  T                   G  +++   WD E  + +      L  +   
Sbjct: 170 VTDTTMAAGT-------------------GILNLKTLTWDQELLDILKIKKEQLPKIAQP 210

Query: 280 HHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESV 337
               I              +     K+LG+   T +  G S  D +   +GV        
Sbjct: 211 TKV-IF------------PIKTEYVKKLGIDSDTKIILGAS--DGYLSTIGVN------- 248

Query: 338 SEAKENEEEAICHRMVLVC-GTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSA 396
                    AI      +  GTS     +       P     F        +L  G  + 
Sbjct: 249 ---------AIDSDHCALNVGTSGAIRTIVDQPKIDPSA-SYFCYPADKTHYLLGGPVNN 298

Query: 397 TGALL----DYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 452
            G +       + +     +   + A +                          A + ++
Sbjct: 299 GGIVFNWARQTLFDADETPQDFLDVAQT------------------------APAGSRNL 334

Query: 453 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG 512
             LP   G R+PI D  ++G   G+T    + ++A    A ++GI +       +   + 
Sbjct: 335 IFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMAR---AVIEGIIFNLYDAASNLIKNT 391

Query: 513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEA 572
            K   + A GG  K+    Q  A+I   PI+  +E +S  L A  L   A      L   
Sbjct: 392 KKPVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQDL-SE 450

Query: 573 MKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608
           +     A +V  P  +PK    +   + ++ E+   
Sbjct: 451 IGQFAQADKVYFP--NPKEAATYQKLFPLYCEIRNA 484

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score =  229 bits (586), Expect = 4e-68
 Identities = 93/584 (15%), Positives = 168/584 (28%), Gaps = 101/584 (17%)

Query: 54  RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           R++  GVD  T S +  + D E+G+L+    +               +  W A   A + 
Sbjct: 4   RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTS-----VDPSYWWSAFQEAAEQ 58

Query: 113 ACSLANVDGEEVKGVGFAA-TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171
           A        ++V  +        +V +D  G+ +         R+ ++W D  +  QA  
Sbjct: 59  A-----GGLDDVSALAVGGQQHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAA 104

Query: 172 INSR------------------NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213
           +  +                      ++  G +        K+ WV EN  E+   +   
Sbjct: 105 LIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAI 164

Query: 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL 273
               DWLS+R  G    +                   +   + D  +  +  +    +  
Sbjct: 165 CLPHDWLSWRIAGYGPVAEGEDAHLEAL--FTDRSDASGTIYYDAASNEYRRDLIAMVLE 222

Query: 274 GDLIDGHHAKIGRSVAFP-----GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--G 326
                        ++  P                A     +  G  +     D      G
Sbjct: 223 AAEGAKAAQSHAEAIVLPTVLGPRDAAP-VKADPAIAGKNVEGGCLLAPGGGDNAMASLG 281

Query: 327 VGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVP 385
           +G+                      + +  GTS    A+S N  +   G    F  A   
Sbjct: 282 LGMAVGD------------------VSISLGTSGVAAAISENPTYDLTGAVSGF--ADCT 321

Query: 386 KFWLTEGG-QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPF 444
             +L      + +  L                 A          L    + +     +  
Sbjct: 322 GHYLPLACTINGSRIL----------------DAGRA------ALGVDYDELAKLAFASK 359

Query: 445 VAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHI 504
             A    I ++P F G R+P   P +     GMTL ++ +    L  A V+G+    R  
Sbjct: 360 PGA--NGITLVPYFDGERTP-NRPNATATFSGMTLANTTR--ENLARAFVEGLLCSQRDC 414

Query: 505 VEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 564
           +E   + G  I  +L  GG AK+         I+G  +  P  +E V +GAA   A    
Sbjct: 415 LELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLS 474

Query: 565 RYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608
             +    A +      +   P     V + +             
Sbjct: 475 GETEP-PAWQLTIDGVETGEP--TEAVYEAYAKARGEGHHHHHH 515

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score =  172 bits (437), Expect = 3e-47
 Identities = 76/582 (13%), Positives = 150/582 (25%), Gaps = 124/582 (21%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAV 110
           +    + VD+G  S R  L     +        I  +  G    Q+    W   ++ +A+
Sbjct: 2   TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNG-LHSQNGYVTWDVDSLESAI 60

Query: 111 DSACSLANVDGEEVKGVGFAA-TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 169
               +     G  +  +G        V +D  G  V            + + D R     
Sbjct: 61  RLGLNKVCAAGIAIDSIGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLM 111

Query: 170 EKINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG- 226
            +   +     + Q  G    P     +L  + E   E    +   + + D+ SYR TG 
Sbjct: 112 AQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGK 171

Query: 227 ------DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGD 275
                 + T +                         ++ +  WD+      G      G 
Sbjct: 172 MNWEYTNATTTQLV----------------------NINSDDWDESLLAWSGANKAWFGR 209

Query: 276 LIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPE 335
                          PG+ +G         E+ +V      +   D  +  +    +   
Sbjct: 210 PTH------------PGNVIGH-WICPQGNEIPVVAV---ASH--DTASAVIASPLNGSR 251

Query: 336 SVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPG--VWGPFWSAMVPKFWLTEGG 393
           +                 L  GT +     S+                      +     
Sbjct: 252 AAY---------------LSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKN 296

Query: 394 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453
                 L   + E  +                       L ++I                
Sbjct: 297 IMGLWLLQRVLQERQIND---------------------LPALIAA------TQALPACR 329

Query: 454 VLPD-----FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEH- 507
            + +     F       ++ ++        +  S+ +LA         +A     ++   
Sbjct: 330 FIINPNDDRFINPDEMCSEIQAACREMAQPIPESDAELAR---CIFDSLALLYADVLHEL 386

Query: 508 CNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G     L   GG  +N L  Q  AD  G  +I     E+  LG   +  +     +
Sbjct: 387 AQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAG-PVEASTLGNIGIQLMTLDELN 445

Query: 568 SLIEAMKAM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFE 607
           ++ +  + +   A      P+ D ++  Y  A     R+  E
Sbjct: 446 NVDDFRQVVSTTANLTTFTPNPDSEIAHY-VALIHSTRQTKE 486

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score =  159 bits (404), Expect = 1e-42
 Identities = 75/534 (14%), Positives = 139/534 (26%), Gaps = 91/534 (17%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           S    + +D+G   ++  L+D  G++L     P    +        + D    +      
Sbjct: 4   STGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDV--- 60

Query: 113 ACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 171
              L+      V  +        + A+  DG               + +           
Sbjct: 61  ---LSRYADHPVTTIVPVGHGAGIAALT-DGRLA---------FPPLDYEQSIPEAVMAD 107

Query: 172 INSRNSPVLQYCGGAVSPEM--QPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 229
             S+        G    P+      +L W+ +   +  +     +  + + ++  TG   
Sbjct: 108 YRSQR-DPFARTGSPALPDGLNIGSQLWWLDQLHPDVMANA-TLLPWAQYWAWFLTG--- 162

Query: 230 RSLCTTVCKWTYLG-HAHMQQMNEKGFRD-MEACGWDDEFWEEIGLGDLIDGHHAKIGRS 287
                 V + T LG H+ +    +  F    +  GW   F                    
Sbjct: 163 ----RAVSEVTSLGCHSDLWDPQDGDFSPMAKRLGWAARFAP------------------ 200

Query: 288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEA 347
           +   G  +G+ L PA A+  GL P   V   L D++A  +            A       
Sbjct: 201 IVRAGDTVGA-LLPAIAERTGLSPDVQVLAGLHDSNAALLA----ARGFAEIADNE---- 251

Query: 348 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 407
                  V  T T  +A+      +     P     +       G      +        
Sbjct: 252 -----ATVLSTGTWFIAMRLPATPVDTATLPEARDCLV-NVDVHGR--PVPSARFMGGRE 303

Query: 408 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 467
                 +  R          LL                  L     +LP       P   
Sbjct: 304 IETLIEIDTRRVDIKPDQPALLAAV------------PEVLRHGRMILPTLMRGFGPY-- 349

Query: 468 PKSKGIICGMTLDSSEKQ-LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK 526
           P  +        D  E++  A LY A           + +           +L  G  A+
Sbjct: 350 PHGRFAWINRPEDWFERRAAACLYAA----------LVADTALDLIGSTGRILVEGRFAE 399

Query: 527 NPLFLQQHADII-GCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 579
             +F++  A +   C +     +  V  GA  L     +    L+        +
Sbjct: 400 ADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRPQGELVRIEPLDTGS 453

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           TE ++V+P F G  +P  D +++G I G+T  + ++       AT++ + Y TR ++E  
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLESLCYQTRDVMEAM 397

Query: 509 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
           +   G  + +L   GG  KN   +Q  ADI+   +  P   E+  LGAA L  +A   + 
Sbjct: 398 SKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWE 457

Query: 568 SLIEAMKAMNAAGQVIHPSKDPK 590
           S  + +       +   P  D  
Sbjct: 458 SK-DDIAKNWKLEEKFDPKMDEG 479

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LF++ G++ G A     Q + +   +E  + +IW ++ A +    + 
Sbjct: 9   LSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE 68

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAE 170
            +V  +++ G+G      T             +V W+  + R   + IVW   +      
Sbjct: 69  NDVRADQIAGIGITNQRET-------------TVVWDKHTGRPIYHAIVWQSRQTQSICS 115

Query: 171 KI 172
           ++
Sbjct: 116 EL 117

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score = 71.0 bits (175), Expect = 3e-13
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
             +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++  
Sbjct: 340 DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTM 396

Query: 509 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G  I  L   GG AKN L +Q  ADI+   +      E+  LGAA L  +A   + 
Sbjct: 397 KKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWK 456

Query: 568 SLIEAMKAMNAAGQVIHPSKDPK 590
            L + +K+M   GQ+  P    +
Sbjct: 457 DL-DELKSMAEEGQMFTPEMPAE 478

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 20/122 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           + +D GT S+RA +FD +GK +GS+     Q + +   +E ++ +IW+++ + +  A   
Sbjct: 8   MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 67

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAE 170
           + +  E + G+G      T             +V W+  + +   N IVW   ++   A+
Sbjct: 68  SGIRPEAIAGIGITNQRET-------------TVVWDKTTGQPIANAIVWQSRQSSPIAD 114

Query: 171 KI 172
           ++
Sbjct: 115 QL 116

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 70.6 bits (174), Expect = 5e-13
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
            E ++ +P F G  +P  D  ++GII G+T  +  + LA    AT++ IAY TR +V+  
Sbjct: 332 NEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---ATLEAIAYLTRDVVDEM 388

Query: 509 NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSS 568
                +I  L   GG   N   +Q  ADI+   +I P   E+  LGAA L  +A   ++ 
Sbjct: 389 EK-LVQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWAD 447

Query: 569 LIEAMKAMNAAGQVIHPSKDPK 590
               +  +  A ++  P  D K
Sbjct: 448 T-REIAELWKAERIFEPKMDEK 468

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT SARA +FD    + G       Q +     +E +  +IW A   A+  A   
Sbjct: 6   LSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQS 65

Query: 117 ANVDGEEVKGVGFA----ATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 172
           A ++  ++  +G       T   +  D DG P+          N IVW   R  +  E+I
Sbjct: 66  ARIEPNQIAAIGVTNQRETT---LVWDKDGKPL---------YNAIVWQCRRTAEMVEEI 113

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           +++++++P F G  +P  DP ++G I GMT ++   + A    A ++ + Y TR ++E  
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFAR---AALEAVCYQTRDLLEAM 416

Query: 509 NA---HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 565
           +           L   GG+  +   +Q+ +D++  P+  P   E+  LG A L    A  
Sbjct: 417 HKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGV 476

Query: 566 YSSLIEAMKAMNAAGQVIHPSKDPK 590
           + +  EA     A  +   P  D  
Sbjct: 477 WPNQ-EAFAKSWARDRRFEPHMDEA 500

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S RA +FD + K+ G       Q + +   +E    +IW  + + V  A   
Sbjct: 29  LAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK 88

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAE 170
           + +   ++  +G      T              V W+ ++ +   N IVW D R     +
Sbjct: 89  SGITANDIAAIGITNQRET-------------VVVWDRETGKPIHNAIVWQDRRTAAFCD 135

Query: 171 KI 172
           K+
Sbjct: 136 KL 137

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
               + +P F G  +P   P ++G + G+T   +   +A    A ++  A+ +R +V+  
Sbjct: 340 NGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIAR---AALEATAFQSREVVDAM 396

Query: 509 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
           NA  G  +  L   GG+  N L +Q  AD +G  ++ P+  E+  LGAA    +A   + 
Sbjct: 397 NADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWK 456

Query: 568 SLIEAMKAMNAAGQVIHPSKDPK 590
              + +    A  +   PS +  
Sbjct: 457 GE-QDVIDNWAEDKRWSPSMESG 478

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 20/114 (17%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD SG++  +      QI+     +E +   IW+ +   V  A + 
Sbjct: 5   LAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR 64

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHR 164
            N+  E++  VG      T             +V W+  + +   N IVW D R
Sbjct: 65  GNLTHEDIAAVGITNQRET-------------AVVWDKTTGKPVYNAIVWQDTR 105

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 506
           T  +  +P F G  +P     ++  I GMT ++    +     A ++GIA+    IV+  
Sbjct: 343 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAFQLNEIVDSL 399

Query: 507 HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY 566
             +     +  L   GG+ KN  F+Q ++DII   I + +  E   LGAA+L  +  K +
Sbjct: 400 TSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIW 459

Query: 567 SSLIEAMKAMNAAGQVIHPSKDPK 590
            SL      +  +  V H   D K
Sbjct: 460 DSLDSVKSLLRRSDAVFHSKMDDK 483

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 34/161 (21%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QI-----WKEGDCIEQSSTDIWHAICAAVD 111
           L +D  T S +   +DE   ++ S +    Q      W E D IE     I   +   ++
Sbjct: 7   LSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIE-----IMTNLYNLMN 61

Query: 112 SACSL--ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWN---GDSRRNIIVWMDH 163
               +         +K +G      T              + W+   G    N IVW+D 
Sbjct: 62  EGIKVLKDKYTSVIIKCIGITNQRET-------------VIIWDRITGKPLYNAIVWLDT 108

Query: 164 RAVKQAEKINSR--NSPVLQYCGGAVSPEMQPPKLLWVKEN 202
           R  +   + +++  N+ + +  G   +      K+LW+ +N
Sbjct: 109 RVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQN 149

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 508
           T D++ +P F G  +P  DP ++G + G+T  +S   LA    A ++G+A+  R +V   
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAM 391

Query: 509 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 567
               G ++  L A GG+A+N LFL+  AD++G P+ +P   E+  LGAA++  V A   S
Sbjct: 392 EEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGALS 451

Query: 568 SLIEAMKAMNAAGQVIHPSKDP 589
              E +       +   P+   
Sbjct: 452 P--EDVAGRFREAERFLPTMPE 471

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LF   G+ +  A     Q++ +   +E    +IW     A       
Sbjct: 5   LALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR 64

Query: 117 ANVDGEEVKGVGFA---ATCSLVAVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAE 170
           A  +  EV  +G      T             ++ W+  + +   N IVW D R     E
Sbjct: 65  AGAEAGEVLALGITNQRET-------------TLLWDRKTGKPLHNAIVWQDRRTTPLCE 111

Query: 171 KI 172
            +
Sbjct: 112 AL 113

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Length = 326

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
            +G+D+G  + +  +    G +    S    I ++G         I  +I  ++     L
Sbjct: 8   IIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGK-------HIVPSIIESIRHRIDL 60

Query: 117 ANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWN 150
            N+  E+  G+G        +VD +   V  ++N
Sbjct: 61  YNMKKEDFVGIGMGTPG---SVDIEKGTVVGAYN 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 57/505 (11%), Positives = 137/505 (27%), Gaps = 142/505 (28%)

Query: 119 VDGEEVKGVGFAATCSLVA-VDADGSPVSVSWNGDSRRNIIVWM-------DHRAVKQAE 170
           +DG  V G G   T  +   V                   I W+           ++  +
Sbjct: 155 IDG--VLGSG--KTW-VALDVCLSYKVQCKMDFK------IFWLNLKNCNSPETVLEMLQ 203

Query: 171 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWS--------MVFRWMDLSDWLSY 222
           K+  +  P   +   +        ++  ++  L+            +V    ++ +  ++
Sbjct: 204 KLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAW 259

Query: 223 RATGDDTRSLCTTVCKW--TYLGHAHMQQ----MNEKGFRDMEACGWDDEF--WEEIGLG 274
            A     + L TT  K    +L  A         +       E          + +    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQ 316

Query: 275 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID--AHAGGVGVMES 332
           DL                +P    +   + ++         G +  D   H     +   
Sbjct: 317 DL---------PREVLTTNPRRLSIIAESIRD---------GLATWDNWKHVNCDKLTTI 358

Query: 333 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVPKFWLTE 391
           +  S++  +  E                  ++V      IP  +    W  ++       
Sbjct: 359 IESSLNVLEPAEYRK-MFDR----------LSVFPPSAHIPTILLSLIWFDVIKSD---- 403

Query: 392 GGQSATGALLDYIIENHVASRSLANR-AASRHVSLFELLNGTLESMIHERNSPFV-AALT 449
                       ++ N +   SL  +      +S+  +    LE  +   N   +  ++ 
Sbjct: 404 ----------VMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIV 450

Query: 450 EDIHVLPDFHGNRSPIADPKSKGIIC---G---MTLDSSEK--QLALLYL---------- 491
           +  ++   F  +   +  P          G     ++  E+     +++L          
Sbjct: 451 DHYNIPKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 492 -------------ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA-DI 537
                         T+Q + +   +I ++   +   ++ +L          FL +   ++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---------FLPKIEENL 559

Query: 538 IGCP------IILPRENESVLLGAA 556
           I         I L  E+E++   A 
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 69/295 (23%)

Query: 334 PESVSEAKENEEEAICHRMVLV-----CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFW 388
            +   + ++   E    + VL+      G +   + V  +      +   F       FW
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DF-----KIFW 186

Query: 389 LTEGGQSATGALLDYIIEN--HVASRSLANRA-ASRHVSL-FELLNGTLESMIHERNSPF 444
           L     ++   +L+ +++   +    +  +R+  S ++ L    +   L  ++  +  P+
Sbjct: 187 LNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PY 243

Query: 445 VAAL-----TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAY 499
              L      ++      F        +   K ++   T            +      A 
Sbjct: 244 ENCLLVLLNVQNAKAWNAF--------NLSCKILL--TTRFKQ--------VTDFLSAAT 285

Query: 500 GTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVL-LGAAI 557
            T   ++H +      +            L        + C    LPRE  +      +I
Sbjct: 286 TTHISLDHHSMTLTPDEVK---------SLL----LKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 558 LGAVAAK--------RYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 604
           +              ++ +  +    + ++  V+ P+ + + K +      +F  
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYR-KMFDR--LSVFPP 383

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Length = 429

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            FL + +G G     L +  G++L      I    + D + +        +   ++    
Sbjct: 109 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLAR--------LLFEIEEFFQ 160

Query: 116 LANVDGEEVKGVGFAA 131
                 + V  +    
Sbjct: 161 TYAAQLDRVTSIAITL 176

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Length = 343

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117
           L VD+G  + R  +    G+++   +             ++  +  + I      A + A
Sbjct: 33  LAVDLGGTNLRVAIVSMKGEIVKKYTQF---------NPKTYEERINLILQMCVEAAAEA 83

Query: 118 NVDGEEVKGVGFAA 131
                 + GVG + 
Sbjct: 84  VKLNCRILGVGIST 97

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Length = 406

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            +L + +  G     L D S KL+   S  + +  +   +++        I + +D    
Sbjct: 86  HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR--------IISHIDQFFI 137

Query: 116 LANVDGEEVKGVGFAA 131
                 E +  +    
Sbjct: 138 RHQKKLERLTSIAITL 153

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Length = 380

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 50  PARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAA 109
            + + +  LG++V      A L D S  +L   + P+         +    +  + +   
Sbjct: 82  ISPNCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRI 134

Query: 110 VDSACSLANVDGEEVKGVGFAA 131
           +D A  +    G ++  +  AA
Sbjct: 135 IDRAKDMMEKLGSKLSALTVAA 156

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Length = 321

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           + LG+DVG  S + GL    G++  +       W  G            ++   + +   
Sbjct: 20  MILGIDVGGTSVKFGLVTPEGEIQNATRFMTADWVNGI-------GFVESMKLEIGNFLK 72

Query: 116 LANVDGEEVKGVGFAA 131
                   VKGVG   
Sbjct: 73  ----QYPIVKGVGIGW 84

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Length = 321

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSAC 114
            + +GVD+G     AG+ DE G++L +         EG         I  AICAAV  A 
Sbjct: 2   GLTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEG---------IVDAICAAVAGA- 51

Query: 115 SLANVDGEEVKGVGFAA 131
                +G +V+ VG  A
Sbjct: 52  ----SEGHDVEAVGIGA 64

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Length = 305

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           MA  T  P  S    +GVD G    R  L    G  L  A            + Q     
Sbjct: 1   MARQTMNP--SIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG------ASALSQGIAKS 52

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCS 134
           W A+ + +++A   A +              S
Sbjct: 53  WQAVLSTLEAAFQQAGLPAAPASACAIGLGLS 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	621
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	100.0
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	100.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	100.0
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	100.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	100.0
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	100.0
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	100.0
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	100.0
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	100.0
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	100.0
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	100.0
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	100.0
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	100.0
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	100.0
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	100.0
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	100.0
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	100.0
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	100.0
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	100.0
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	99.64
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	98.57
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	98.3
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	98.21
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	98.2
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	98.11
1z05_A	429	Transcriptional regulator, ROK family; structural	98.09
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	98.03
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	98.02
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	97.99
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	97.92
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	97.87
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	97.84
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	97.67
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	97.42
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	97.41
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	97.4
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	97.36
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.25
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	97.2
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.08
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	97.03
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	96.98
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	96.98
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	96.98
2ap1_A	327	Putative regulator protein; zinc binding protein,	96.97
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	96.91
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	96.9
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	96.9
3mcp_A	366	Glucokinase; structural genomics, joint center for	96.88
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	96.83
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	96.65
3djc_A	266	Type III pantothenate kinase; structural genomics,	96.56
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	96.46
3lm2_A	226	Putative kinase; structural genomics, joint center	96.31
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	96.27
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	96.26
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	96.25
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	96.17
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	96.12
1cza_N	917	Hexokinase type I; structurally homologous domains	96.06
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	95.92
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	95.87
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	95.49
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	95.45
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	95.41
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	95.25
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	95.0
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	94.91
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	94.83
1cza_N	917	Hexokinase type I; structurally homologous domains	94.66
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	93.69
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	93.67
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	93.37
3qbx_A	371	Anhydro-N-acetylmuramic acid kinase; acetate and s	93.37
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	93.12
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	92.66
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	92.45
3cqy_A	370	Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1	91.64
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	91.62
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	91.61
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	91.23
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	91.04
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	90.33
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	90.31
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	89.68
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	89.1
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	87.38
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	87.02
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	86.77
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	86.37
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	85.27
2f9w_A	271	Pantothenate kinase; COAA, transferase; HET: PAU;	85.14
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	85.1
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	81.42
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	80.97

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=100.00  E-value=4.8e-97  Score=830.99  Aligned_cols=539  Identities=49%  Similarity=0.868  Sum_probs=465.5

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      |+|+||||+|||++|++++|.+|+++++.+.+++.+. .+||+||||++||+++++++++++++.++++.+|.+||||+|
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   83 (554)
T 3l0q_A            4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDAT   83 (554)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhHEEEEEEcCC
Confidence            4799999999999999999999999999999998655 899999999999999999999999988777789999999999


Q ss_pred             CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcc
Q 007010          133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR  212 (621)
Q Consensus       133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  212 (621)
                      +++|+||++|+||......++.+|+|+|+|+|+.++++++++..++++++||+++++.++++||+|+++|+||+|+++.+
T Consensus        84 ~~~v~~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~  163 (554)
T 3l0q_A           84 CSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGH  163 (554)
T ss_dssp             SCEEEEETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEE
T ss_pred             CceEEECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhce
Confidence            99999999999995333344557999999999999999998876789999999999999999999999999999999999


Q ss_pred             eecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCC
Q 007010          213 WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG  292 (621)
Q Consensus       213 ~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g  292 (621)
                      |++++|||.|+|||+...+++|.++.               ..||+++++||+++|+.+||++.+...+..+++++++++
T Consensus       164 ~~~~~dyl~~~LTG~~~~s~as~t~~---------------~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~i~~~~  228 (554)
T 3l0q_A          164 LFDLPDFLTWRATKDETRSLCSTVCK---------------WTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMG  228 (554)
T ss_dssp             EEEHHHHHHHHHHSCCCEEHHHHHHH---------------SCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCSCEECTT
T ss_pred             EEcHHHHHHHHHhCCccccccchhhc---------------cccccccCCCCHHHHHHcCCccccchhHHhCCCcccCCc
Confidence            99999999999999986555443211               137889999999999999998632000002333588999


Q ss_pred             CccC-CCccHHHHHHcCCCCCCcEEEechhhhhhhccccccc-CccchhhhhhhhhhccceEEEEecccceecceeCccc
Q 007010          293 HPLG-SGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESV-PESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKL  370 (621)
Q Consensus       293 ~~~G-~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~-~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~  370 (621)
                      +++| + |++++|+++||++||||++|++|++|+++|+.|.. +||..       ....+++.+++|||++++.+++++.
T Consensus       229 ~~~G~~-lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~-------~~~~~~~~~~~GTs~~~~~~~~~~~  300 (554)
T 3l0q_A          229 APLGHG-LSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGEN-------ANFDRRIALIGGTSTAHMAMSRSAH  300 (554)
T ss_dssp             CBCTTS-SCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTSCC-------CCTTTEEEEECSSSEEEEEEESSCC
T ss_pred             CeeCcc-cCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCCcc-------ccccceEEEEecchheeeeecCCcc
Confidence            9999 8 99999999999999999999999999999863444 44300       0001278899999999999999888


Q ss_pred             ccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCC
Q 007010          371 FIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTE  450 (621)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~  450 (621)
                      .+++.|.+++++..|+.|+++++++++|.+++||++.+...+++.+.++..+.+.|++|+++++++++.  .|..+.+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~  378 (554)
T 3l0q_A          301 FISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGE--PENIAFLTN  378 (554)
T ss_dssp             CCTTSEEEEETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--GGGGGGGGT
T ss_pred             ccCCcceeecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCC--CCccccccC
Confidence            777777666666678999999999999999999999875433344455556788999999988876432  110012379


Q ss_pred             CeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHH
Q 007010          451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF  530 (621)
Q Consensus       451 gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w  530 (621)
                      |++|+|||.|||+|+||+++||+|+|++.+|++.|++|+|||++|||||++|++++.|++.|.++++|+++||++||++|
T Consensus       379 gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~  458 (554)
T 3l0q_A          379 DIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIF  458 (554)
T ss_dssp             TCCEECCTTCBCSSSCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHH
T ss_pred             ceEEcccccCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHH
Confidence            99999999999999999999999999999999999988899999999999999999999888899999999999999999


Q ss_pred             HHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007010          531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV  610 (621)
Q Consensus       531 ~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~  610 (621)
                      +||+|||+|+||+++...|++|+|||++|++++|.|+|++++++++++..++|+|+ |+++++.|+++|++|+++|++++
T Consensus       459 ~Qi~ADv~g~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~-~~~~~~~Y~~~y~~y~~l~~~~~  537 (554)
T 3l0q_A          459 VQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQ-TNKIKAYYDRKYRVFHQMYHDHM  537 (554)
T ss_dssp             HHHHHHHHCCEEEEESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCeEEecCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888998888999994 47899999999999999999999


Q ss_pred             HHHHHHHH
Q 007010          611 SQRSIMAQ  618 (621)
Q Consensus       611 ~~~~~~~~  618 (621)
                      +++++|++
T Consensus       538 ~~~~~~~~  545 (554)
T 3l0q_A          538 RYQALMQE  545 (554)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhc
Confidence            99999986

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=100.00  E-value=1.6e-94  Score=801.22  Aligned_cols=486  Identities=20%  Similarity=0.314  Sum_probs=433.5

Q ss_pred             CCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        52 m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      |+|+|+||||+|||++|++++|.+|+++.+.+.+++.+. .+||+||||++||+++++++++++++.+   .+|++||||
T Consensus         1 M~m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~---~~I~~Igis   77 (504)
T 3ll3_A            1 MSLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKIAAISWS   77 (504)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS---SEEEEEEEE
T ss_pred             CCCCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC---CCeEEEEEE
Confidence            667899999999999999999999999999999998654 8999999999999999999999988754   689999999


Q ss_pred             CC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhH
Q 007010          131 AT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW  207 (621)
Q Consensus       131 ~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  207 (621)
                      +| +++|+||++|+||         +|+|+|+|+|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|
T Consensus        78 ~q~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~  148 (504)
T 3ll3_A           78 SQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVF  148 (504)
T ss_dssp             ECSSCBEEECTTSCBS---------SCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHH
T ss_pred             CCCCcEEEECCCCCCc---------ccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHH
Confidence            98 9999999999999         8999999999999999998875  6799999999999999999999999999999


Q ss_pred             HhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcc
Q 007010          208 SMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS  287 (621)
Q Consensus       208 ~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~  287 (621)
                      +++.+|++++|||.|+|||+.. ++.|              .+|+|++||+++++||+++|+.+||++.+   ||    +
T Consensus       149 ~~~~~~~~~~dyl~~~LTG~~~-~d~s--------------~As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~  206 (504)
T 3ll3_A          149 SQAQKWIGIKEYIIFRLTGKLV-TDTT--------------MAAGTGILNLKTLTWDQELLDILKIKKEQ---LP----K  206 (504)
T ss_dssp             HHCCEEECHHHHHHHHHHSCCE-EEHH--------------HHTTTTCBCTTTSSBCHHHHHHHTCCGGG---SC----E
T ss_pred             HHHhheeCHHHHHHHHHhCCcc-cchh--------------HhhcccCeeCCCCCcCHHHHHHcCCCHHH---CC----C
Confidence            9999999999999999999875 3333              36688999999999999999999999754   47    6


Q ss_pred             cccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeC
Q 007010          288 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR  367 (621)
Q Consensus       288 v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~  367 (621)
                      ++++++++|+ |++++|+++||++||||++|++|++|+++|+ |..+|              |++++++|||+++.+.++
T Consensus       207 i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~  270 (504)
T 3ll3_A          207 IAQPTKVIFP-IKTEYVKKLGIDSDTKIILGASDGYLSTIGV-NAIDS--------------DHCALNVGTSGAIRTIVD  270 (504)
T ss_dssp             EECTTCEECC-CCHHHHHHHTCCTTCEEEEEEEHHHHHHHTT-TCCST--------------TEEEEEESSSEEEEEEES
T ss_pred             eeCCcceeec-cCHHHHHhcCCCcCCCEEEEccHHHHHHHhC-CCCCC--------------CcEEEEechhhhheeeCC
Confidence            8899999997 9999999999999999999999999999998 66655              589999999999999999


Q ss_pred             cccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccC
Q 007010          368 NKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAA  447 (621)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~  447 (621)
                      ++..++.... +++...++.|+++++++++|.+++|+++.++..+           ..++++.+++++         +|+
T Consensus       271 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~-----------~~~~~~~~~a~~---------~~~  329 (504)
T 3ll3_A          271 QPKIDPSASY-FCYPADKTHYLLGGPVNNGGIVFNWARQTLFDAD-----------ETPQDFLDVAQT---------APA  329 (504)
T ss_dssp             SCCCCTTCCS-EEEEEETTEEEEEEEESCSHHHHHHHHHHHTCTT-----------CCHHHHHHHHHT---------SCT
T ss_pred             CcccCCCCce-EEEEeCCCeEEEEeehhhHHHHHHHHHHHhccch-----------hHHHHHHHHHhc---------CCC
Confidence            8876653321 3333346789999999999999999999875321           112222223433         246


Q ss_pred             CCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCC
Q 007010          448 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN  527 (621)
Q Consensus       448 g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s  527 (621)
                      +++|++|+|||+|+|+|+||+++||+|+|++..|++.|+   +||++||+||.+|++++.|++.+.++++|+++||++||
T Consensus       330 g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s  406 (504)
T 3ll3_A          330 GSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKS  406 (504)
T ss_dssp             TGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCS
T ss_pred             CCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcC
Confidence            899999999999999999999999999999999999985   56999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007010          528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE  607 (621)
Q Consensus       528 ~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~  607 (621)
                      ++|+||+||++|+||+++...|++|+|||++|++++|.|+|+++ ++++++..++|+|  +++.++.|+++|++|+++|+
T Consensus       407 ~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~-~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~  483 (504)
T 3ll3_A          407 DFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQDLSE-IGQFAQADKVYFP--NPKEAATYQKLFPLYCEIRN  483 (504)
T ss_dssp             HHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSCCSGGG-GGGTSCEEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCeEEecCCCCchhHHHHHHHHHHcCccCCHHH-HHHhcCCCeEEcc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987 5677778889999  99999999999999999999


Q ss_pred             HHHHHHH
Q 007010          608 QQVSQRS  614 (621)
Q Consensus       608 ~~~~~~~  614 (621)
                      +++++.+
T Consensus       484 ~l~~~~~  490 (504)
T 3ll3_A          484 ALAASYG  490 (504)
T ss_dssp             HHGGGSG
T ss_pred             HHHHHHH
Confidence            9987543

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=100.00  E-value=4.5e-94  Score=798.43  Aligned_cols=489  Identities=20%  Similarity=0.268  Sum_probs=437.3

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+|||++|++++|.+|+++.+.+.+++... .+||+||||++||+++++++++++++.++++.+|.+|||++|
T Consensus         6 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~   85 (508)
T 3ifr_A            6 GRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGM   85 (508)
T ss_dssp             -CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEEC
T ss_pred             CCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEECC
Confidence            4799999999999999999999999999999998654 899999999999999999999999887777789999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                       +++|+||++|+|+         +|+|+|+|+|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|++
T Consensus        86 ~~~~v~~D~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  156 (508)
T 3ifr_A           86 LPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGA  156 (508)
T ss_dssp             SSCBEEECTTSCBC---------SCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHT
T ss_pred             CCcEEEECCCCCCc---------ccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHH
Confidence             9999999999999         8999999999999999998875  578999999999999999999999999999999


Q ss_pred             hcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccc
Q 007010          210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  289 (621)
Q Consensus       210 ~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~  289 (621)
                      +.+|++++|||.|+|||+.. ++.|+              +|+|++||+++++||+++|+.+|||..+   ||    +++
T Consensus       157 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~i~  214 (508)
T 3ifr_A          157 IATVCGSYDYINMLLTGERV-VDRNW--------------ALEGGFIDLASGTVEADLVALAHIPPSA---VP----PAH  214 (508)
T ss_dssp             CSEEECHHHHHHHHHHCCCC-EEHHH--------------HHHHTCEETTTTEECHHHHHTTTSCGGG---SC----CEE
T ss_pred             HhhhcCchHHHHHHhcCCcc-ccHhH--------------hhcccCccCccCCCCHHHHHHcCCCHHH---CC----CCc
Confidence            99999999999999999874 34433              5678899999999999999999999754   47    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcc
Q 007010          290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  369 (621)
Q Consensus       290 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~  369 (621)
                      ++++++|+ |++++|+++||++|+||++|++|++|+++|+ |..+|              |++++++|||+++.+.++++
T Consensus       215 ~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~  278 (508)
T 3ifr_A          215 PTHRVLGA-VTAEAAALTGLPTGLPVYGGAADHIASALAA-GITRP--------------GDVLLKFGGAGDIIVASATA  278 (508)
T ss_dssp             CTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCST--------------TEEEEEESSSEEEEECBSCC
T ss_pred             CCCCeeec-cCHHHHHHhCCCCCCeEEEECchHHHHHHhC-CCCCC--------------CcEEEEechhhhheeeCCCc
Confidence            99999997 9999999999999999999999999999999 66655              58999999999999999988


Q ss_pred             cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCC-HHHHHHHHHHhhhhhcCCCCccCC
Q 007010          370 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS-LFELLNGTLESMIHERNSPFVAAL  448 (621)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~p~~~~g  448 (621)
                      ..++.. ..+ ++..++.|+++++++++|.+++|+++.+..          .+.+ .|++|++++++.         |++
T Consensus       279 ~~~~~~-~~~-~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~~~~l~~~a~~~---------~~~  337 (508)
T 3ifr_A          279 KSDPRL-YLD-YHLVPGLYAPNGCMAATGSALNWLAKLLAP----------EAGEAAHAQLDALAAEV---------PAG  337 (508)
T ss_dssp             CCBTTB-BCC-BCSSTTCBCCEEEESSSHHHHHHHHHHHST----------TCTTHHHHHHHHHHHTS---------CTT
T ss_pred             ccCCCc-cee-eeecCCceEEechhhhhHHHHHHHHHHHhh----------cCCCCCHHHHHHHHhcC---------CCC
Confidence            776663 223 445688999999999999999999998731          0121 588888877653         368


Q ss_pred             CCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCH
Q 007010          449 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP  528 (621)
Q Consensus       449 ~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~  528 (621)
                      ++|++|+|||.|||+|+||+++||+|+|++..|++.|+   +||++||+||.+|++++.|++.|.++++|+++||++||+
T Consensus       338 ~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~  414 (508)
T 3ifr_A          338 ADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHL---WRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSR  414 (508)
T ss_dssp             GGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGGCH
T ss_pred             CCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcccCH
Confidence            99999999999999999999999999999999999985   569999999999999999998888999999999999999


Q ss_pred             HHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007010          529 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ  608 (621)
Q Consensus       529 ~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~  608 (621)
                      +|+||+||++|+||+++...|++|+|||++|++++|.|+|++++. ++++..++|+|  +++.++.|+++|++|+++|++
T Consensus       415 ~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~  491 (508)
T 3ifr_A          415 VWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGDDLGWDDVT-ALVRTGEKITP--DPAKAEVYDRLYRDFSALYAT  491 (508)
T ss_dssp             HHHHHHHHHHTSCEEEEECCSTHHHHHHHHHHHHTCSSCCGGGGG-GGSEEEEEECC--CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEecCCCCchHHHHHHHHHHHhCCCCCHHHHH-hhcCCCeEECc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998864 57778899999  999999999999999999999


Q ss_pred             HHHHHHHH
Q 007010          609 QVSQRSIM  616 (621)
Q Consensus       609 ~~~~~~~~  616 (621)
                      ++++.+-+
T Consensus       492 ~~~~~~~~  499 (508)
T 3ifr_A          492 LHPFFHRS  499 (508)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHHh
Confidence            99865433

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=100.00  E-value=8.7e-94  Score=796.68  Aligned_cols=486  Identities=21%  Similarity=0.293  Sum_probs=434.2

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      |+|+||||+|||++|++++|.+|+++.+.+.+++.+. .+||+||||++||+++++++++++ +.+.++.+|.+|||++|
T Consensus         4 m~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~~~I~~Igis~q   82 (511)
T 3hz6_A            4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSGQ   82 (511)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCGGGEEEEEEEEC
T ss_pred             ccEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCChhHeEEEEEecc
Confidence            5799999999999999999999999999999998665 899999999999999999999998 76667789999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                       +++|+||++|+||         +|+|+|+|+|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|++
T Consensus        83 ~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  153 (511)
T 3hz6_A           83 MQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGR  153 (511)
T ss_dssp             CSCBEEECTTSCBS---------SCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTT
T ss_pred             cccEEEECCCcCCC---------cCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHH
Confidence             9999999999999         8999999999999999998764  679999999999999999999999999999999


Q ss_pred             hcceec-chhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCccc
Q 007010          210 VFRWMD-LSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV  288 (621)
Q Consensus       210 ~~~~l~-~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v  288 (621)
                      +.+|++ ++|||.|+|||+.. ++.|+              +|+|++||+++++||+++|+.+||++.+   ||    ++
T Consensus       154 ~~~~l~~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~i  211 (511)
T 3hz6_A          154 LRHVVLGAKDYVVLRLTGRHA-TDRTN--------------ASTTGLYRPKDDAWHVELLADYGFSLDL---MP----RL  211 (511)
T ss_dssp             CCEEECSHHHHHHHHHHSCCE-ECHHH--------------HHHTTCEETTTTEECHHHHHHTTCCGGG---SC----EE
T ss_pred             HHHHhcCcHHHHHHHHhCCce-eeHhH--------------hhcccceeCCCCCcCHHHHHHhCCCHHH---CC----CC
Confidence            999999 99999999999874 34433              5688999999999999999999999754   47    68


Q ss_pred             ccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeC-
Q 007010          289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-  367 (621)
Q Consensus       289 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~-  367 (621)
                      +++++++|+ |++++|+++||++|+||++|++|++|+++|+ |..++              |++++++|||+++.+.++ 
T Consensus       212 ~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~  275 (511)
T 3hz6_A          212 LEPGEQVGG-VSALAARQTGFVSGTPVLCGLGDAGAATLGV-GVLDD--------------EDAYLHLGTTGWLARLTQT  275 (511)
T ss_dssp             CCTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEEEEEEC
T ss_pred             cCCCCcccc-cCHHHHHhhCCCCCCeEEEECchHHHHHHhC-CCCCC--------------CcEEEEecchhhheeecCC
Confidence            899999997 9999999999999999999999999999999 66655              589999999999999988 


Q ss_pred             ccccc-CCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCcc
Q 007010          368 NKLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  446 (621)
Q Consensus       368 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  446 (621)
                      ++..+ +......+++..++.|...++++++|.+++|+++.+...          ....|++|++++++.         |
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~~~l~~~a~~~---------~  336 (511)
T 3hz6_A          276 DPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHR----------PGEDCAEYFHMAAAE---------V  336 (511)
T ss_dssp             CCCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHHHHHGGGGTCC----------TTSCSHHHHHHHHHH---------H
T ss_pred             eecccCCCCceEEEEEecCCceEEEeehhhHHHHHHHHHHHhccc----------ccccHHHHHHHHHhC---------C
Confidence            88766 543222233456788766699999999999999987510          012578888888765         3


Q ss_pred             CC---CCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC
Q 007010          447 AL---TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG  523 (621)
Q Consensus       447 ~g---~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG  523 (621)
                      ++   ++|++|+|||+|+|+|+||+++||+|+|++..|++.|+   +||++||+||.+|++++.|++ |. +++|+++||
T Consensus       337 ~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GG  411 (511)
T 3hz6_A          337 QGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGG  411 (511)
T ss_dssp             TTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESG
T ss_pred             CCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCc
Confidence            57   89999999999999999999999999999999999995   569999999999999999998 88 999999999


Q ss_pred             CCCCHHHHHHHHHhhCCce-eeccCCCchhHHHHHHHHhhccccCCHHHHHHHh---hcCCcEEcCCCChhhHHHHHHHH
Q 007010          524 LAKNPLFLQQHADIIGCPI-ILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM---NAAGQVIHPSKDPKVKKYHDAKY  599 (621)
Q Consensus       524 ga~s~~w~Qi~Advlg~pV-~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~---~~~~~~~~P~~~~~~~~~y~~~y  599 (621)
                      ++||++|+||+||++|+|| +++...|++|+|||++|++++|.|+|++++++++   ++..++|+|  +++.++.|+++|
T Consensus       412 ga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~~~~~~~~~~~~~~~P--~~~~~~~y~~~y  489 (511)
T 3hz6_A          412 GARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHP--QPCDEGRRRRKF  489 (511)
T ss_dssp             GGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHHHTTSCSCHHHHHHHHHTC---CCCBCC--CCCCHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHHHhCCcCCHHHHHHHhhccCCCCeEECc--CHHHHHHHHHHH
Confidence            9999999999999999999 9989999999999999999999999998888888   888899999  999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 007010          600 LIFRELFEQQVSQR  613 (621)
Q Consensus       600 ~~y~~l~~~~~~~~  613 (621)
                      ++|+++|++++++.
T Consensus       490 ~~~~~~~~~l~~~~  503 (511)
T 3hz6_A          490 ERFKQCVETLGRLD  503 (511)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999988754

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.7e-89  Score=757.24  Aligned_cols=479  Identities=19%  Similarity=0.315  Sum_probs=413.3

Q ss_pred             CCCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~-~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +|+++|+||||+|||++|++++|.+|+++.+.+.+++.. +.+||+||||++||+++++++++++++.++++.+|.+|||
T Consensus        22 ~MM~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igi  101 (520)
T 4e1j_A           22 SMMGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGI  101 (520)
T ss_dssp             CCCSCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred             HHhhCeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEE
Confidence            466689999999999999999999999999999999865 4899999999999999999999999887777789999999


Q ss_pred             cCC-CceEEec-CCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcch
Q 007010          130 AAT-CSLVAVD-ADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQE  205 (621)
Q Consensus       130 s~~-~~~v~vD-~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe  205 (621)
                      ++| +++|+|| ++|+|+         +|+|+|+|.|+.++++++++..  +.++++||+++++.++++||+|+++|+||
T Consensus       102 s~~g~~~v~~D~~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe  172 (520)
T 4e1j_A          102 TNQRETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKG  172 (520)
T ss_dssp             EECSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTT
T ss_pred             eCCcceEEEEECCCCeEC---------ccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChH
Confidence            998 9999999 589999         8999999999999999998875  57999999999999999999999999999


Q ss_pred             hHHhhcc----eecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCcccccc
Q 007010          206 SWSMVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH  280 (621)
Q Consensus       206 ~~~~~~~----~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~  280 (621)
                      +|+|+++    |++++|||.|+|||+. ..++.|+              +|+|++||+++++||+++|+.+||++.+   
T Consensus       173 ~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---  235 (520)
T 4e1j_A          173 AQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATN--------------ASRTLLYNIAENAWDDELTEVLRVPKEM---  235 (520)
T ss_dssp             HHHHHHTTCEEEEEHHHHHHHHHTTTCCCEEEHHH--------------HTTSSSEETTTTEECHHHHHHHTCCGGG---
T ss_pred             HHHHHhcCCeEecCHHHHHHHHhcCCCeeeecHHH--------------hhhhcccccccCCCCHHHHHHcCCCHHH---
Confidence            9999985    6789999999999973 2344443              5688999999999999999999999754   


Q ss_pred             ccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccc
Q 007010          281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST  360 (621)
Q Consensus       281 lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~  360 (621)
                      ||    +++++++++|. ++++     ||++|+||++|++|++|+++|+ |..+|              |++++++|||+
T Consensus       236 LP----~i~~~~~~~G~-~~~~-----~l~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~  290 (520)
T 4e1j_A          236 LP----EVKDCAADFGV-TDPS-----LFGAAIPILGVAGDQQAATIGQ-ACFKP--------------GMLKSTYGTGC  290 (520)
T ss_dssp             SC----EEECSBSCCCB-CCHH-----HHTSCCBEEEECCHHHHHHHHT-TCCST--------------TCEEEEESSSE
T ss_pred             CC----ceecCCCceee-eChh-----hCCCCCeEEEECCcHHHHHHhC-CCCCC--------------CcEEEEecCch
Confidence            47    68899999997 8864     5678999999999999999999 66655              58999999999


Q ss_pred             eeccee-CcccccC-Ccccccccccc-CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhh
Q 007010          361 CHMAVS-RNKLFIP-GVWGPFWSAMV-PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMI  437 (621)
Q Consensus       361 ~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  437 (621)
                      ++.+.+ +++..++ +.+..+++... ++.|.++++++++|.+++|+++.+...            ..|+++++++++. 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~~-  357 (520)
T 4e1j_A          291 FALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVI------------KAAPDTGSLAESA-  357 (520)
T ss_dssp             EEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTTCCC-----------------CHHHHHTS-
T ss_pred             heEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHHHHHHHHcCCc------------ccHHHHHHHHhcC-
Confidence            877766 5555443 33322322221 247999999999999999999987421            2466777776542 


Q ss_pred             hhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 007010          438 HERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH----GH  513 (621)
Q Consensus       438 ~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~----g~  513 (621)
                               ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++||+||.+|++++.|++.    | 
T Consensus       358 ---------~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~~~~~g-  424 (520)
T 4e1j_A          358 ---------DPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEF---ARAALEAVCYQTRDLLEAMHKDWRRNG-  424 (520)
T ss_dssp             ---------CTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             ---------CCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence                     3689999999999999999999999999999999999985   5699999999999999999875    6 


Q ss_pred             CcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHH
Q 007010          514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK  593 (621)
Q Consensus       514 ~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~  593 (621)
                      ++++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++. ++.+..++|+|  +++.++
T Consensus       425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~  501 (520)
T 4e1j_A          425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFA-KSWARDRRFEP--HMDEAT  501 (520)
T ss_dssp             --CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCCCHHHHHHHHHHHHHHTSSCCHHHHH-HTCCEEEEECC--CSCHHH
T ss_pred             CcceEEEeCccccCHHHHHHHHHHhCCeEEecCCCccHHHHHHHHHHHHcCCcCCHHHHH-hhcCCCeEECC--CCCHHH
Confidence            889999999999999999999999999999999999999999999999999999999864 66677889999  888776


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007010          594 YHDAKYLIFRELFEQQV  610 (621)
Q Consensus       594 ~y~~~y~~y~~l~~~~~  610 (621)
                       |+++|++|+++|++.+
T Consensus       502 -~~~~y~~~~~~~~~~~  517 (520)
T 4e1j_A          502 -RKVKLKGWRSAVKRTL  517 (520)
T ss_dssp             -HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHh
Confidence             7999999999998764

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=100.00  E-value=3.9e-88  Score=750.79  Aligned_cols=479  Identities=19%  Similarity=0.341  Sum_probs=418.9

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+|||++|++++|.+|+++.+.+.+++.+. .+||+||||++||+++++++++++++.++++.+|.+|||++|
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   83 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQ   83 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeCC
Confidence            4799999999999999999999999999999998654 899999999999999999999999888777789999999998


Q ss_pred             -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                       +++|+||++ |+|+         +|+|+|+|+|+.++++++++..  +.++++||+++++.++++||+|+++|+||+|+
T Consensus        84 ~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  154 (506)
T 3h3n_X           84 RETTVVWDKTTGQPI---------ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQE  154 (506)
T ss_dssp             SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHH
T ss_pred             cccEEEEeCCCCeEC---------CCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHH
Confidence             999999998 9999         8999999999999999998875  67999999999999999999999999999999


Q ss_pred             hhcc----eecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       209 ~~~~----~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      ++++    |++++|||.|+|||+. ..++.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP-  216 (506)
T 3h3n_X          155 KADNGELLFGTIDSWLVWKLTDGQVHVTDYSN--------------ASRTMLYNIHKLEWDQEILDLLNIPSSM---LP-  216 (506)
T ss_dssp             HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------------HHTTTSEETTTTEECHHHHHHTTCCGGG---CC-
T ss_pred             HHhcCCeEEecHHHHHHHHhcCCceeeeEHHH--------------hhhhhCeecCCCCcCHHHHHHcCcCHHH---CC-
Confidence            9986    7889999999999952 2244443              5688999999999999999999999754   47 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. +++++  .+|  +||||++|++|++|+++|+ |..+|              |++.+++|||+++.
T Consensus       217 ---~i~~~~~~~G~-~~~~~--~lg--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  273 (506)
T 3h3n_X          217 ---EVKSNSEVYGH-TRSYR--FYG--SEVPIAGMAGDQQAALFGQ-MAFEK--------------GMIKNTYGTGAFIV  273 (506)
T ss_dssp             ---EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---ceecCCCccee-eChHH--hcC--CCCeEEEECCcHHHHHHhC-CCCCC--------------CcEEEEecchheee
Confidence               68899999997 99876  466  7999999999999999998 66655              58999999999876


Q ss_pred             ceeC-cccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 007010          364 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  439 (621)
Q Consensus       364 ~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  439 (621)
                      +.+. ++...+ +.+..++ +..++  .|.++++++++|.+++|+++.+..            ...|+++++++++.   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~---  337 (506)
T 3h3n_X          274 MNTGEEPQLSDNDLLTTIG-YGINGKVYYALEGSIFVAGSAIQWLRDGLRM------------IETSPQSEELAAKA---  337 (506)
T ss_dssp             EEEETCCCSCCTTSEEEEE-EEETTEEEEEEEEEECCSSHHHHHHHHTSCC------------CSSTTHHHHHHTTC---
T ss_pred             eecCCccccCCCceEEEee-eecCCCCEEEEecchhhHHHHHHHHHHHcCC------------CCcHHHHHHHHhcC---
Confidence            6554 444333 3332232 23344  699999999999999999998742            12466777766542   


Q ss_pred             cCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007010          440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  518 (621)
Q Consensus       440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I  518 (621)
                         |   + .+|++|+|||+|+|+|+||+++||+|+|++..|++.|+   +||++|||||.+|++++.|++ .|.++++|
T Consensus       338 ---~---~-~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~~g~~~~~i  407 (506)
T 3h3n_X          338 ---K---G-DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDF---VRATLQAVAYQSKDVIDTMKKDSGIDIPLL  407 (506)
T ss_dssp             ---C---S-CSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCCCEE
T ss_pred             ---C---C-CCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence               2   3 48999999999999999999999999999999999986   569999999999999999987 58899999


Q ss_pred             EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHH
Q 007010          519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  598 (621)
Q Consensus       519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~  598 (621)
                      +++||+++|++|+||+||++|+||+++...|++|+|||++|++++|.|+|++|+ .++.+..++|+|  +++.+ .|+++
T Consensus       408 ~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~  483 (506)
T 3h3n_X          408 KVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTP--EMPAE-ERDNL  483 (506)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHHTTSSCSHHHH-HTTCCCCCEECC--CSCHH-HHHHH
T ss_pred             EEecccccCHHHHHHHHHHhCCeEEecCCCcchhHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CCCHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999999985 567778899999  77665 58999


Q ss_pred             HHHHHHHHHHHHHH
Q 007010          599 YLIFRELFEQQVSQ  612 (621)
Q Consensus       599 y~~y~~l~~~~~~~  612 (621)
                      |++|+++|++++.|
T Consensus       484 y~~~~~~~~~~~~~  497 (506)
T 3h3n_X          484 YEGWKQAVAATQTF  497 (506)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998874

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=100.00  E-value=2.5e-88  Score=749.36  Aligned_cols=478  Identities=25%  Similarity=0.358  Sum_probs=416.0

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (621)
                      |+||||+|||++|++++|.+|+++...+.+++.+. .+||+||||++||+++++++++++++.+  ..+|.+|||++| +
T Consensus         1 ~~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~--~~~i~~Igis~~~~   78 (484)
T 2itm_A            1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS--LQDVKALGIAGQMH   78 (484)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC--CTTCCEEEEEECSS
T ss_pred             CEEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC--ccceEEEEEcCCcC
Confidence            47999999999999999999999999999998665 8999999999999999999999987742  568999999998 9


Q ss_pred             ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcce
Q 007010          134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  213 (621)
Q Consensus       134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  213 (621)
                      ++|+||++|+|+         +|+|.|+|.|+.++++++++....++++||+++++.++++||+|+++|+||+|+++++|
T Consensus        79 ~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~  149 (484)
T 2itm_A           79 GATLLDAQQRVL---------RPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV  149 (484)
T ss_dssp             CBEEECTTCCBC---------SCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEE
T ss_pred             cEEEECCCcCCC---------cccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhhe
Confidence            999999999999         89999999999999999987655677889999999999999999999999999999999


Q ss_pred             ecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007010          214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  293 (621)
Q Consensus       214 l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~  293 (621)
                      +.++|||.|+|||+.. ++.|+              +|+|++||+++++||+++|+.+||+..+   ||    +++++++
T Consensus       150 l~~~d~l~~~LTG~~~-td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lp----~i~~~~~  207 (484)
T 2itm_A          150 LLPKDYLRLRMTGEFA-SDMSD--------------AAGTMWLDVAKRDWSDVMLQACDLSRDQ---MP----ALYEGSE  207 (484)
T ss_dssp             ECHHHHHHHHHHSCCE-EEHHH--------------HHTTTCEETTTTEECHHHHHTTTCCGGG---SC----EEECTTS
T ss_pred             eCcHHHHHHHHhCCce-eeHHH--------------hhccccccCCCCCcCHHHHHHcCCCHHH---CC----CccCCcc
Confidence            9999999999999864 33432              5688999999999999999999999754   46    6889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccC
Q 007010          294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  373 (621)
Q Consensus       294 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~  373 (621)
                      ++|+ +++++|+++||+ |+||++|+||++|+++|+ |..++              +++++++|||+++..+++.+..++
T Consensus       208 ~~G~-~~~~~a~~~Gl~-g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~  270 (484)
T 2itm_A          208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP  270 (484)
T ss_dssp             EEEE-CCHHHHHHHTSC-CCEEECCEEHHHHHHHHH-TCCST--------------TCEEEEESSSEEEEEECSSCCCCC
T ss_pred             eeec-cCHHHHHHhCCC-CCeEEEEchHHHHHHHhC-CCCCC--------------CcEEEEccchheeEEecCCCccCc
Confidence            9997 999999999999 999999999999999998 66655              579999999999988888776554


Q ss_pred             Cc-cccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCe
Q 007010          374 GV-WGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI  452 (621)
Q Consensus       374 ~~-~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl  452 (621)
                      .. ...+ ++..++.|+++++++++|.+++|+++.+.             ...|+++++++++.         |++++|+
T Consensus       271 ~~~~~~~-~~~~~g~~~~~~~~~~~G~~~~W~~~~~~-------------~~~~~~~~~~a~~~---------~~~~~gl  327 (484)
T 2itm_A          271 ESAVHSF-CHALPQRWHLMSVMLSAASCLDWAAKLTG-------------LSNVPALIAAAQQA---------DESAEPV  327 (484)
T ss_dssp             SSSCEEE-ECSSTTCEEEEEEECCHHHHHHHHHHHTT-------------CCSHHHHHHHGGGC---------CTTSCCC
T ss_pred             ccceEEe-ecccCCeeeeeehhhhHHHHHHHHHHhcC-------------cccHHHHHHHHhcC---------CCCCCCe
Confidence            22 1122 34467899999999999999999998763             12366666655432         3689999


Q ss_pred             EEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHH
Q 007010          453 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ  532 (621)
Q Consensus       453 ~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Q  532 (621)
                      +|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++||++|++|++++.|++.|.++++|+++||+++|++|+|
T Consensus       328 ~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Q  404 (484)
T 2itm_A          328 WFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQ  404 (484)
T ss_dssp             EEEEEEC--------CCEEEEEEEEETTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHH
T ss_pred             EEeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHH
Confidence            9999999999999999999999999999999985   5699999999999999999888888899999999999999999


Q ss_pred             HHHHhhCCceeeccCCCc-hhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007010          533 QHADIIGCPIILPRENES-VLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVS  611 (621)
Q Consensus       533 i~Advlg~pV~~~~~~e~-~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~  611 (621)
                      |+||++|+||+++...|. +|+|||++|++++|.|+|++|+.+.+ ...++|+|  +++.++.|+++|++|+++|+++++
T Consensus       405 i~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~~~~~~~~~~~~-~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~~~~  481 (484)
T 2itm_A          405 MLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQL-PLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLP  481 (484)
T ss_dssp             HHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCTTSCHHHHSCCC-CEEEEECC--CHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCCcCCHHHHHHhc-CCCeEECC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998885 89999999999999999999875443 45678999  999999999999999999998765


Q ss_pred             H
Q 007010          612 Q  612 (621)
Q Consensus       612 ~  612 (621)
                      +
T Consensus       482 ~  482 (484)
T 2itm_A          482 L  482 (484)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=100.00  E-value=7.4e-88  Score=748.03  Aligned_cols=479  Identities=19%  Similarity=0.323  Sum_probs=418.3

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+|||++|++++|.+|+++.+.+.+++... .+||+||||++||+++++++++++++.+.++.+|.+|||++|
T Consensus         5 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   84 (501)
T 3g25_A            5 EKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAGIGITNQ   84 (501)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEEC
T ss_pred             ccEEEEEEeCccceEEEEEcCCCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEECC
Confidence            4699999999999999999999999999999998654 899999999999999999999999987777789999999998


Q ss_pred             -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                       +++++||++ |+|+         +|+|+|+|+|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|+
T Consensus        85 ~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~  155 (501)
T 3g25_A           85 RETTVVWDKHTGRPI---------YHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGARE  155 (501)
T ss_dssp             SSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred             cCcEEEEECCCCeEC---------CCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHH
Confidence             999999999 9999         8999999999999999998875  67999999999999999999999999999999


Q ss_pred             hhcc----eecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       209 ~~~~----~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      ++++    |++++|||.|+|||.. ..++.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       156 ~~~~~~~l~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP-  217 (501)
T 3g25_A          156 KAENGDLLFGTIDTWLVWKLSGKAAHITDYSN--------------ASRTLMFNIHDLEWDDELLELLTVPKNM---LP-  217 (501)
T ss_dssp             HHHTTCEEEEEHHHHHHHHHTTTSCCEEEHHH--------------HTTSSSEETTTTEECHHHHHHHTCCGGG---CC-
T ss_pred             HHhcCCeEEecHHHHHHHHhcCCCeeeeeHHH--------------hhcccCeeCCCCCCCHHHHHHhCcCHHH---CC-
Confidence            9987    7889999999999942 2234443              5688999999999999999999999754   47 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. ++++.  .+|  +|+||++|++|++|+++|+ |..+|              |++++++|||+++.
T Consensus       218 ---~i~~~~~~~G~-~~~~~--~~g--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  274 (501)
T 3g25_A          218 ---EVKASSEVYGK-TIDYH--FYG--QEVPIAGVAGDQQAALFGQ-ACFER--------------GDVKNTYGTGGFML  274 (501)
T ss_dssp             ---EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---ceecCCCceec-cchHH--hCC--CCCeEEEECccHHHHHHhC-CCCCC--------------CcEEEEccchhhee
Confidence               68889999997 98763  445  7999999999999999998 66655              58999999999877


Q ss_pred             ceeC-cccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 007010          364 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  439 (621)
Q Consensus       364 ~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  439 (621)
                      +.+. ++...+ +.+..++ +..++  .|.++++++++|.+++|+++.+..            ...|+++++++++.   
T Consensus       275 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~---  338 (501)
T 3g25_A          275 MNTGDKAVKSESGLLTTIA-YGIDGKVNYALEGSIFVSGSAIQWLRDGLRM------------INSAPQSESYATRV---  338 (501)
T ss_dssp             EECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSTHHHHHHHHTSCC------------CSSGGGHHHHHTTS---
T ss_pred             eecCCccccCCCCeEEEee-EecCCccEEEEecccccHHHHHHHHHHHcCC------------CCcHHHHHHHHhhC---
Confidence            6664 444433 3333232 33344  799999999999999999998742            12466777766542   


Q ss_pred             cCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007010          440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  518 (621)
Q Consensus       440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I  518 (621)
                         |   + .+|++|+|||.|+|+|+||+++||+|+|++..|++.|+   +||++||+||.+|++++.|++ .|.++++|
T Consensus       339 ---~---~-~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~~~l~~~~g~~~~~i  408 (501)
T 3g25_A          339 ---D---S-TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHF---IRATLESLCYQTRDVMEAMSKDSGIDVQSL  408 (501)
T ss_dssp             ---S---C-CTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHSSCCCSEE
T ss_pred             ---C---C-CCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence               2   3 58999999999999999999999999999999999996   559999999999999999987 68899999


Q ss_pred             EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHH
Q 007010          519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  598 (621)
Q Consensus       519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~  598 (621)
                      +++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++ +++++..++|+|  +++.+ .|+++
T Consensus       409 ~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~  484 (501)
T 3g25_A          409 RVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKDDI-AKNWKLEEKFDP--KMDEG-EREKL  484 (501)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCTHHH-HHHCCEEEEECC--CCCHH-HHHHH
T ss_pred             EEecchhcCHHHHHHHHHHhCCceEecCCCcchHHHHHHHHHHHhCccCCHHHH-HHhccCCeEECC--CCCHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999999985 567777899999  77765 59999


Q ss_pred             HHHHHHHHHHHHHH
Q 007010          599 YLIFRELFEQQVSQ  612 (621)
Q Consensus       599 y~~y~~l~~~~~~~  612 (621)
                      |++|+++|++.+.|
T Consensus       485 y~~~~~~~~~~~~~  498 (501)
T 3g25_A          485 YRGWKKAVEATQVF  498 (501)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988765

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=100.00  E-value=1.8e-87  Score=744.54  Aligned_cols=484  Identities=22%  Similarity=0.329  Sum_probs=426.3

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      |+|+||||+|||++|++++|.+|+++.+.+.+++... .+||.||||++||+++++++++++++.++++.+|.+||||+|
T Consensus         2 ~~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~   81 (497)
T 2zf5_O            2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQ   81 (497)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CcEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecC
Confidence            4689999999999999999999999999999998654 899999999999999999999999887777788999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC-hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhh
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN-SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV  210 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~-~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  210 (621)
                       +++|+||++|+|+         +|+|.|+|.|+.++++++.+.. ++++++||.++++.++++||+|+++|+||+|+++
T Consensus        82 ~~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~  152 (497)
T 2zf5_O           82 RETTLVWDKDGKPL---------YNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKA  152 (497)
T ss_dssp             SSCEEEECTTCCBS---------SCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHH
T ss_pred             CCcEEEECCCCCCc---------ccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHH
Confidence             9999999999999         8999999999999999987653 5689999999999999999999999999999999


Q ss_pred             cc----eecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCc
Q 007010          211 FR----WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR  286 (621)
Q Consensus       211 ~~----~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~  286 (621)
                      ++    |++++|||.|+|||+.. ++.|              ++|+|++||+++++||+++|+.+||+..+   ||    
T Consensus       153 ~~~~~~~~~~~d~l~~~LTG~~~-td~s--------------~As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----  210 (497)
T 2zf5_O          153 EKGEVMFGTVDTFLIYRLTGEHV-TDYS--------------NASRTMLFNIKKLDWDDELLELFDIPESV---LP----  210 (497)
T ss_dssp             HTTCCEEEEHHHHHHHHHHSCCE-EEHH--------------HHTTSSSEETTTTEECHHHHHHTTCCGGG---CC----
T ss_pred             hcCCCEEEcHHHHHHHHHhCCee-eeHH--------------HhhhhcCccCCCCCcCHHHHHHcCcCHHH---CC----
Confidence            88    89999999999999764 3343              25688999999999999999999999754   46    


Q ss_pred             ccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceeccee
Q 007010          287 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS  366 (621)
Q Consensus       287 ~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~  366 (621)
                      +++++++++|. ++++   .+|  +|+||++|++|++|+++|+ |..+|              +++++++|||+++.+.+
T Consensus       211 ~i~~~~~~~G~-~~~~---~~g--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~  269 (497)
T 2zf5_O          211 EVRESSEVYGY-TKKE---LLG--AEIPVSGDAGDQQAALFGQ-AAFEA--------------GMVKATYGTGSFILVNT  269 (497)
T ss_dssp             EEECSEEEEEE-CCHH---HHS--SCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEEEEE
T ss_pred             CcCCCCCeeee-cCHH---HcC--CCCeEEEEccHHHHHHHhC-CCCCC--------------CcEEEEcchhheeeEEC
Confidence            68889999997 9987   588  8999999999999999998 66655              57999999999998888


Q ss_pred             CcccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC
Q 007010          367 RNKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP  443 (621)
Q Consensus       367 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p  443 (621)
                      +++..++ +.+..++ +..++  .|+++++++++|.+++|+++.+..            ...|+++++++++.       
T Consensus       270 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~w~~~~~~~------------~~~~~~l~~~a~~~-------  329 (497)
T 2zf5_O          270 DKMVLYSDNLLTTIA-WGLNGRVSYALEGSIFVTGAAVQWLRDGIKI------------IKHASETEELATKL-------  329 (497)
T ss_dssp             ETCCCCCTTSEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHHTSCC------------CSCGGGHHHHHTTS-------
T ss_pred             CCCccCCCCcEEEEE-EEcCCCCEEEEechhhhHHHHHHHHHHHhCC------------CCcHHHHHHHHhhC-------
Confidence            8876544 3322232 33343  799999999999999999997642            12356676655432       


Q ss_pred             CccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC
Q 007010          444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG  523 (621)
Q Consensus       444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG  523 (621)
                         ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||.+|++++.|++.+ ++++|+++||
T Consensus       330 ---~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG  402 (497)
T 2zf5_O          330 ---ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEMEKLV-QIKELRVDGG  402 (497)
T ss_dssp             ---SSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESG
T ss_pred             ---CCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCc
Confidence               25889999999999999999999999999999999999964   5999999999999999998877 8899999999


Q ss_pred             CCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHH
Q 007010          524 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR  603 (621)
Q Consensus       524 ga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~  603 (621)
                      +++|++|+||+||++|+||+++...|++|+|||++|++++|.|++++++ .++....++|+|  +++. +.|+++|++|+
T Consensus       403 ~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~g~~~~~~~~-~~~~~~~~~~~P--~~~~-~~y~~~y~~~~  478 (497)
T 2zf5_O          403 ATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREI-AELWKAERIFEP--KMDE-KTRERLYKGWK  478 (497)
T ss_dssp             GGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSSCCHHHH-HTTCCEEEEECC--CCCH-HHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhcCCeEEEcCCCcchHHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CccH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 466666789999  8887 89999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 007010          604 ELFEQQVSQRSIMAQAL  620 (621)
Q Consensus       604 ~l~~~~~~~~~~~~~~~  620 (621)
                      ++|++++.|+++|+.++
T Consensus       479 ~~~~~~~~~~~~~~~~~  495 (497)
T 2zf5_O          479 EAVKRAMGWAKVVDSAK  495 (497)
T ss_dssp             HHHHTTTTGGGTCCCC-
T ss_pred             HHHHHHHhHhhhhhhhc
Confidence            99999999988887765

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=100.00  E-value=8e-88  Score=751.66  Aligned_cols=478  Identities=19%  Similarity=0.309  Sum_probs=411.1

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+||||+|++|||.+|+++++.+.+++.+. .+||+||||++||+++++++++++++.++++.+|++||||+|
T Consensus         3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis~q   82 (526)
T 3ezw_A            3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ   82 (526)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEeCC
Confidence            4799999999999999999999999999999998765 999999999999999999999999999888999999999998


Q ss_pred             -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010          133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  208 (621)
Q Consensus       133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  208 (621)
                       +++|+||++ |+||         +|+|+|+|+|+.++++++.+..  +.++++||+++++.++++||+|+++|+|++|+
T Consensus        83 ~~~~v~~D~~~G~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~  153 (526)
T 3ezw_A           83 RETTIVWEKETGKPI---------YNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRE  153 (526)
T ss_dssp             SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred             CCCEEEEECCCCeEc---------ccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHH
Confidence             999999985 9999         8999999999999999998875  56899999999999999999999999999999


Q ss_pred             hhcc----eecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          209 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       209 ~~~~----~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      ++++    +..+++||.|+|||.. ..++.|              .+|+|++||+++++||+++++.+||+..+   || 
T Consensus       154 ~~~~~~~~~~~i~~~L~~~Lt~g~~~~td~s--------------~As~t~l~d~~~~~w~~~ll~~~gi~~~~---LP-  215 (526)
T 3ezw_A          154 RARRGELLFGTVDTWLIWKMTQGRVHVTDYT--------------NASRTMLFNIHTLDWDDKMLEVLDIPREM---LP-  215 (526)
T ss_dssp             HHHTTCEEEECHHHHHHHHHTTTSCCEEEHH--------------HHTTSSSEETTTTEECHHHHHHHTCCGGG---CC-
T ss_pred             HHHHhhhhccchhHHHhhhhcCCCceEEEch--------------hhccccCcCccccCcCHHHHHHcCCCHHH---CC-
Confidence            9987    5667889999999753 234444              36788999999999999999999999864   47 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. ++++++    +..|+||++|++|++|+++|+ |..++              |++.+++|||+++.
T Consensus       216 ---~i~~~~~~~G~-~~~~~~----~~~gipV~~g~gD~~aa~~G~-g~~~~--------------g~~~~s~GTs~~~~  272 (526)
T 3ezw_A          216 ---EVRRSSEVYGQ-TNIDGK----GGTRIPISGIAGDQQAALFGQ-LCVKE--------------GMAKNTYGTGCFML  272 (526)
T ss_dssp             ---EEECSEEEEEE-ECTTCT----TSCCEEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---CccccccccCc-cchhhh----cCCCCcEEEEcchHHHHhhhc-ccccc--------------ceeEEEeccCeeEe
Confidence               68889999997 887654    445789999999999999998 66665              58999999999988


Q ss_pred             ceeCcccccCC--cccc-ccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 007010          364 AVSRNKLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER  440 (621)
Q Consensus       364 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  440 (621)
                      +.++++...+.  .... .+....++.|.++++++++|.+++||++.+.....           . .+. +.++..    
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~-----------~-~~~-~~~~~~----  335 (526)
T 3ezw_A          273 MNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLIND-----------A-YDS-EYFATK----  335 (526)
T ss_dssp             EECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCCCS-----------S-SCH-HHHHTT----
T ss_pred             cccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHHHHHHHhccccc-----------h-hHH-HHHHhc----
Confidence            88877655442  2211 11223345799999999999999999998753210           0 011 112221    


Q ss_pred             CCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEE
Q 007010          441 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLL  519 (621)
Q Consensus       441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~  519 (621)
                           +++++|++|+|||+|+|+|+||+++||+|+||+..|++.|+   +||++|||||.+|++++.|++ .|.++++|+
T Consensus       336 -----~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i---~RAvlEgia~~~r~~le~l~~~~g~~~~~i~  407 (526)
T 3ezw_A          336 -----VQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHI---IRATLESIAYQTRDVLEAMQADSGIRLHALR  407 (526)
T ss_dssp             -----SSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred             -----cCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence                 25899999999999999999999999999999999999995   569999999999999999986 689999999


Q ss_pred             EecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHH
Q 007010          520 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKY  599 (621)
Q Consensus       520 ~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y  599 (621)
                      ++||++||++|+||+|||||+||+++...|++|+|||++|++|+|.|+|++|+. +.....++|+|  +++.++ |+++|
T Consensus       408 v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~alGAA~lA~~a~G~~~~~~e~~-~~~~~~~~~~P--~~~~~~-~~~~y  483 (526)
T 3ezw_A          408 VDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQ-EKAVIEREFRP--GIETTE-RNYRY  483 (526)
T ss_dssp             EESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCGGGST-TCCCEEEEECC--CSCHHH-HHHHH
T ss_pred             EECchhhCHHHHHHHHHHHCCEEEeCCCCchHHHHHHHHHHHHhCCCCCHHHHH-HhcCCCeEEcC--CCCHHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999998864 44456789999  888776 55789


Q ss_pred             HHHHHHHHHHH
Q 007010          600 LIFRELFEQQV  610 (621)
Q Consensus       600 ~~y~~l~~~~~  610 (621)
                      +.|++++++-+
T Consensus       484 ~~w~~av~r~~  494 (526)
T 3ezw_A          484 AGWKKAVKRAM  494 (526)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=100.00  E-value=1.4e-86  Score=743.19  Aligned_cols=478  Identities=15%  Similarity=0.099  Sum_probs=412.7

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-----CCCc-------cccCHHH-HHHHHHHHHHHHHHHcCCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----EGDC-------IEQSSTD-IWHAICAAVDSACSLANVD  120 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-----~~g~-------~eqd~~~-~~~~~~~~l~~~~~~~~~~  120 (621)
                      |+|+||||+|||++|++|||.+|+++++.+.+|+.+.     .+||       .||||++ ||+++..++ +.+.+.+++
T Consensus         9 ~~~~lgID~GTts~Ka~l~d~~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~-~~l~~~~~~   87 (538)
T 4bc3_A            9 RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIIL-EKMKASGFD   87 (538)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHH-HHHHHTTCC
T ss_pred             CCEEEEEEEcCcCEEEEEECCCCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHH-HHHHHcCCC
Confidence            3699999999999999999999999999999986432     2555       5788975 555555554 555666777


Q ss_pred             CCCEEEEEEcCC-CceEEecCCCC--------------------ceeecCCCCCCcceeEEcCcchHHHHHHHHccC---
Q 007010          121 GEEVKGVGFAAT-CSLVAVDADGS--------------------PVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---  176 (621)
Q Consensus       121 ~~~I~aIgis~~-~~~v~vD~~G~--------------------pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~---  176 (621)
                      +.+|++||||+| +++|+||++|+                    |+         +|+|+|+|+|+.++++++++..   
T Consensus        88 ~~~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~  158 (538)
T 4bc3_A           88 FSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSI---------SDCPVWMDSSTTAQCRQLEAAVGGA  158 (538)
T ss_dssp             GGGEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSC---------SEEECTTCCCCHHHHHHHHHHHTSH
T ss_pred             hHHeEEEEecccceeEEEECCCccccccccccccchhhhccccccc---------cCCcccccCcHHHHHHHHHHhhCcH
Confidence            889999999998 99999999964                    77         8999999999999999998762   


Q ss_pred             hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccc
Q 007010          177 SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFR  256 (621)
Q Consensus       177 ~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~  256 (621)
                      ++++++||+++++.++++||+|+++|+||+|+++++|++++|||.|+|||+...++.|+              +|+|++|
T Consensus       159 ~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG~~~~td~s~--------------As~t~l~  224 (538)
T 4bc3_A          159 QALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSD--------------GSGMNLL  224 (538)
T ss_dssp             HHHHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHTSCCCCBHHH--------------HTTSSCE
T ss_pred             HHHHHHHCCCCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhCCCcccccch--------------hhccccc
Confidence            57899999999999999999999999999999999999999999999999875345543              5688999


Q ss_pred             cCCCCCCCHHHHHHcCCC-ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCc
Q 007010          257 DMEACGWDDEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPE  335 (621)
Q Consensus       257 D~~~~~Ws~~ll~~~gi~-~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~  335 (621)
                      |+++++||+++|+.+|++ ..   .||    +++++++++|+ |++++|+++||++||||++|++|++|+++|+ + .+|
T Consensus       225 d~~~~~W~~~ll~~~gi~~~~---~LP----~i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-~-~~~  294 (538)
T 4bc3_A          225 QIQDKVWSQACLGACAPHLEE---KLS----PPVPSCSVVGA-ISSYYVQRYGFPPGCKVVAFTGDNPASLAGM-R-LEE  294 (538)
T ss_dssp             ETTTTEECHHHHHHHCTTHHH---HHC----CCBCSSCEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-T-CCT
T ss_pred             ccccCCCCHHHHHHhCccHHH---HCC----Ccccccccccc-cCHHHHHHhCCCCCCeEEEecccHHhhhhcc-c-cCC
Confidence            999999999999999998 53   346    68899999997 9999999999999999999999999999998 6 444


Q ss_pred             cchhhhhhhhhhccceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHH
Q 007010          336 SVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA  415 (621)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~  415 (621)
                                    |++++++|||+++.+.++++..++... .+++...++.|+.+++++++|.+++|+++.+.      
T Consensus       295 --------------g~~~~s~GTs~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~------  353 (538)
T 4bc3_A          295 --------------GDIAVSLGTSDTLFLWLQEPMPALEGH-IFCNPVDSQHYMALLCFKNGSLMREKIRNESV------  353 (538)
T ss_dssp             --------------TCEEEEESSSEEEEEEESSCCCCSSSE-EEEETTEEEEEEEEEEESSSHHHHHHHHHHHS------
T ss_pred             --------------CcEEEEeccchheEEecCCCCCCCCcc-eEEeecCCCCEEEeehhhccchHHHHHHHHhc------
Confidence                          589999999999999998877665432 23332334569999999999999999998763      


Q ss_pred             HHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEE------cCCCCCCHHHHHHH
Q 007010          416 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC------GMTLDSSEKQLALL  489 (621)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~------Gl~~~~~~~~~~~~  489 (621)
                             ...|++|++++++.         |++++|++|+|||.|||+|+    ++|.|.      |++. |++.|+   
T Consensus       354 -------~~~~~~l~~~a~~~---------~~g~~gl~~lp~~~Ger~P~----~~G~~~~~~~~~g~~~-~~~~~l---  409 (538)
T 4bc3_A          354 -------SRSWSDFSKALQST---------EMGNGGNLGFYFDVMEITPE----IIGRHRFNTENHKVAA-FPGDVE---  409 (538)
T ss_dssp             -------TTCHHHHHHHHHTS---------CTTGGGCEEEEESSCCSSSC----CCEEEEECTTSCEESC-CCHHHH---
T ss_pred             -------CCCHHHHHHHHhcC---------CCCCCCeEEeecCCCCcCCC----CCceeeeccccccccC-CCHHHH---
Confidence                   23588898888763         36899999999999999996    456664      2332 677774   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccc--cC
Q 007010          490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YS  567 (621)
Q Consensus       490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~--~~  567 (621)
                      +||++|||||.+|++++.|++.+.++++|+++||+++|++|+||+|||+|+||+++...|++|+|||++|++++|.  |+
T Consensus       410 ~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~  489 (538)
T 4bc3_A          410 VRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDV  489 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTTHHHHHHHHHHHHHHHTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCCchHHHHHHHHHHHhCcccCC
Confidence            6699999999999999999877778899999999999999999999999999999999999999999999999998  89


Q ss_pred             CHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007010          568 SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ  612 (621)
Q Consensus       568 s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~  612 (621)
                      |++|+.+.+.+..++|+|  ++++++.|+++|++|+++|+++...
T Consensus       490 ~~~ea~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~~~~~~  532 (538)
T 4bc3_A          490 PFSEVVKLAPNPRLAATP--SPGASQVYEALLPQYAKLEQRILSQ  532 (538)
T ss_dssp             CHHHHHTTSCCCEEEECC--CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhcCCCeeECC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988778778889999  9999999999999999999998765

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=100.00  E-value=3.6e-86  Score=735.12  Aligned_cols=476  Identities=18%  Similarity=0.282  Sum_probs=419.0

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLA--NVDGEEVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~--~~~~~~I~aIgis  130 (621)
                      |+|+||||+|||++|++++|.+|+++.+.+.+++... .+||.||||++||+++++++++++++.  +++..+|.+|||+
T Consensus         3 m~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis   82 (503)
T 2w40_A            3 MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGIT   82 (503)
T ss_dssp             CEEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             ccEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEEc
Confidence            3689999999999999999999999999999998654 899999999999999999999998875  5556789999999


Q ss_pred             CC-CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchh
Q 007010          131 AT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES  206 (621)
Q Consensus       131 ~~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~  206 (621)
                      +| +++++||++ |+|+         +|+|.|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+||+
T Consensus        83 ~~~~~~~~~D~~~G~~l---------~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~  153 (503)
T 2w40_A           83 NQRETVIIWDRITGKPL---------YNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEI  153 (503)
T ss_dssp             ECSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHH
T ss_pred             CCcceEEEEECCCCcCC---------ccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHH
Confidence            98 999999998 9999         8999999999999999998764  578999999999999999999999999999


Q ss_pred             HHhhcc----eecchhHHhhhhccc-cccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCC-cccccc
Q 007010          207 WSMVFR----WMDLSDWLSYRATGD-DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLG-DLIDGH  280 (621)
Q Consensus       207 ~~~~~~----~l~~~dyl~~~LTG~-~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~-~~~~~~  280 (621)
                      |+++++    |++++|||.|+|||+ .. ++.|+              +|+|++||+++++||+++|+.+||+ +.+   
T Consensus       154 ~~~~~~~~~~~~~~~d~l~~~LTG~~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~~---  215 (503)
T 2w40_A          154 KQKIDDGTAVIGNINTWLIFNLTKGNCY-TDVTN--------------ASRTLLMDINTLQWDEKMCKIFNITNMSV---  215 (503)
T ss_dssp             HHHHHTTCEEEEEHHHHHHHHHHTSCCE-EEHHH--------------HTTTTCBCTTTCSBCHHHHHHTTCCCGGG---
T ss_pred             HHHHhcCCeEEECHHHHHHHHHcCCCcc-ccHHH--------------hhhhcCccCCCCccCHHHHHHcCCChHHH---
Confidence            999998    999999999999995 43 34443              5688999999999999999999999 754   


Q ss_pred             ccccCcccccCCCccCCCccHHHHHHcCCCC--CCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecc
Q 007010          281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVP--GTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGT  358 (621)
Q Consensus       281 lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~--g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GT  358 (621)
                      ||    +++++++++|. ++++   .+|  +  |+||++|++|++|+++|+ |..+|              +++++++||
T Consensus       216 lP----~i~~~~~~~G~-~~~~---~~g--~~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GT  270 (503)
T 2w40_A          216 LP----EIKSNCSNFGL-VKSE---HVP--DYLNIPITGCIGDQQSACIGQ-AIFDE--------------GEAKCTYGT  270 (503)
T ss_dssp             SC----EEECSEEEEEE-CCCT---TSG--GGTTCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESS
T ss_pred             CC----CccCCcCceee-ccHH---HcC--CCCCceEEEECchHHHHHHhC-CCCCC--------------CcEEEEech
Confidence            46    68889999997 9876   577  7  999999999999999998 66655              589999999


Q ss_pred             cceecceeC-cccccC-CccccccccccCC----eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHH
Q 007010          359 STCHMAVSR-NKLFIP-GVWGPFWSAMVPK----FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGT  432 (621)
Q Consensus       359 s~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (621)
                      |+++...++ ++..++ +.+..+ ++..++    .|+++++++++|.+++||++ ++..            ..|++|+++
T Consensus       271 s~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~  336 (503)
T 2w40_A          271 GVFLLINTGEKVVYSTCGLITTI-CYKFNDNDKPKYALEGSIGTAGSGVSWLLK-NKLI------------DDPSEASDI  336 (503)
T ss_dssp             SEEEEEECTTSCCCCSSSCEEEE-EECCSTTSCCEEEEEEEESCSHHHHHHHHH-TTSS------------SCGGGHHHH
T ss_pred             hheeeeecCCccccCCCCceeEE-EeecCCCCCceEEEechhhhhHhHHHHHHH-hCCc------------CCHHHHHHH
Confidence            999988886 465544 232223 233444    89999999999999999999 7421            236677777


Q ss_pred             HHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Q 007010          433 LESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-H  511 (621)
Q Consensus       433 ~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~  511 (621)
                      +++.          ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|+   +||++||+||++|++++.|++ .
T Consensus       337 a~~~----------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~  403 (503)
T 2w40_A          337 MEKC----------ENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHI---VRALLEGIAFQLNEIVDSLTSDM  403 (503)
T ss_dssp             HHHC----------CSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhC----------CCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence            7653          2589999999999999999999999999999999999996   559999999999999999976 5


Q ss_pred             CCCc-CEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChh
Q 007010          512 GHKI-DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPK  590 (621)
Q Consensus       512 g~~~-~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~  590 (621)
                      |.++ ++|+++||+++|++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++.+.+.+..++|+|  +++
T Consensus       404 g~~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e~~alGaA~la~~~~G~~~~~~~~~~~~~~~~~~~~P--~~~  481 (503)
T 2w40_A          404 GIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHS--KMD  481 (503)
T ss_dssp             TCSCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTCSSCHHHHHHHHTCEEEEECC--CSC
T ss_pred             CCCccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCcchHHHHHHHHHHHhCccCCHHHHHHhccCCCcEEcc--CCC
Confidence            7788 8999999999999999999999999999999999999999999999999999999987776777789999  888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 007010          591 VKKYHDAKYLIFRELFEQQVS  611 (621)
Q Consensus       591 ~~~~y~~~y~~y~~l~~~~~~  611 (621)
                      . +.|+++|++|+++|++.+.
T Consensus       482 ~-~~y~~~y~~~~~~~~~~~~  501 (503)
T 2w40_A          482 D-KKRKKKTSEWNKAVERTLI  501 (503)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHC
T ss_pred             H-HHHHHHHHHHHHHHHHHhh
Confidence            8 9999999999999987653

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=100.00  E-value=9.4e-86  Score=731.67  Aligned_cols=478  Identities=20%  Similarity=0.330  Sum_probs=419.7

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (621)
                      +|+||||+|||++|++++|.+|+++.+.+.+++... .+||.||||++||+++++++++++++.++++.+|.+|||++| 
T Consensus         2 ~~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~g   81 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQR   81 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECS
T ss_pred             CEEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEeCCC
Confidence            489999999999999999999999999999998654 899999999999999999999999887766678999999998 


Q ss_pred             CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                      +++|+||++ |+|+         +|+|.|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+||+|++
T Consensus        82 ~~~v~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  152 (504)
T 2d4w_A           82 ETAVVWDKTTGKPV---------YNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREK  152 (504)
T ss_dssp             SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHH
T ss_pred             CeEEEEECCCCCCc---------cccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHH
Confidence            999999998 9999         8999999999999999998743  578999999999999999999999999999999


Q ss_pred             hcc----eecchhHHhhhhcc--c---cccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCcccccc
Q 007010          210 VFR----WMDLSDWLSYRATG--D---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH  280 (621)
Q Consensus       210 ~~~----~l~~~dyl~~~LTG--~---~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~  280 (621)
                      +++    |++++|||.|+|||  +   .. ++.|+              +|+|++||+++++||+++|+.+||++.+   
T Consensus       153 ~~~~~~~~~~~~d~l~~~LTG~~~~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---  214 (504)
T 2d4w_A          153 AEKGDLLFGNTDTWVLWNMTGGTEGGVHV-TDVTN--------------ASRTMLMDLDTLSWREDIAADMGIPLSM---  214 (504)
T ss_dssp             HHHTCEEEECHHHHHHHHHTTTTTTCCCE-EEHHH--------------HTTTTCEETTTTEECHHHHHHTTCCGGG---
T ss_pred             HhcCCeEEecHHHHHHHHhcCCCcCCcee-eehhh--------------hhhhcCccCCCCccCHHHHHHhCCCHHH---
Confidence            998    99999999999999  4   33 34443              5688999999999999999999999754   


Q ss_pred             ccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccc
Q 007010          281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST  360 (621)
Q Consensus       281 lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~  360 (621)
                      ||    +++++++++|. ++++  +.+|  + +||++|++|++|+++|+ |..++              +++++++|||+
T Consensus       215 lP----~i~~~~~~~G~-~~~~--~~~G--~-~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~  269 (504)
T 2d4w_A          215 LP----DIRSSSEVYGH-GRPR--GLVP--G-VPIAGILGDQQAATFGQ-ACFEV--------------GQAKNTYGTGN  269 (504)
T ss_dssp             SC----EEECSEEEEEE-CCTT--SSST--T-CEEEEEEEHHHHHHHHT-TCCST--------------TEEEEEESSSE
T ss_pred             CC----CccCCccceec-cchH--HhCC--C-CeEEEECCcHHHHHhhC-CCCCC--------------CcEEEEcchhh
Confidence            46    68899999997 9875  3577  6 99999999999999998 66655              58999999999


Q ss_pred             eecceeC-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHh
Q 007010          361 CHMAVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES  435 (621)
Q Consensus       361 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  435 (621)
                      ++.+.++ ++..++ +.+..+ ++..++   .|+++++++++|.+++|+++.+...            ..|++|++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~~a~~  336 (504)
T 2d4w_A          270 FLLLNTGTEKVMSKNGLLTTV-CYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMF------------EDAPDVEWLAGK  336 (504)
T ss_dssp             EEEEECTTSCCCCSSSCEEEE-EECCTTSCCEEEEEEEESCSHHHHHHHHHTTCTT------------TTCSCTHHHHTT
T ss_pred             eeeeecCCccccCCCCcEEEE-EEEcCCCCceEEEcchhhhHHHHHHHHHHHhCCC------------CCHHHHHHHHhh
Confidence            9988885 465554 333223 233445   8999999999999999999976421            235566666654


Q ss_pred             hhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 007010          436 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK  514 (621)
Q Consensus       436 ~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~  514 (621)
                      .          ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|+   +||++||+||.+|++++.|++ .|.+
T Consensus       337 ~----------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~  403 (504)
T 2d4w_A          337 V----------QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHI---ARAALEATAFQSREVVDAMNADSGVD  403 (504)
T ss_dssp             S----------SSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             C----------CCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2          2588999999999999999999999999999999999996   459999999999999999976 5788


Q ss_pred             cCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHH
Q 007010          515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY  594 (621)
Q Consensus       515 ~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~  594 (621)
                      +++|+++||+++|++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++. ++....++|+|  +++. +.
T Consensus       404 ~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~-~~  479 (504)
T 2d4w_A          404 LTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVI-DNWAEDKRWSP--SMES-GE  479 (504)
T ss_dssp             CCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSSCSHHHHH-HHCCEEEEECC--CSCH-HH
T ss_pred             cceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcchHHHHHHHHHhhcCccCCHHHHH-hhcCCCeEEcc--CCCH-HH
Confidence            89999999999999999999999999999999999999999999999999999999974 66667789999  8887 89


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007010          595 HDAKYLIFRELFEQQVSQRS  614 (621)
Q Consensus       595 y~~~y~~y~~l~~~~~~~~~  614 (621)
                      |+++|++|+++|++++.|.+
T Consensus       480 y~~~y~~~~~~~~~~~~~~~  499 (504)
T 2d4w_A          480 RERLYRNWKKAVTKTMEWVD  499 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccch
Confidence            99999999999999998743

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=100.00  E-value=3.7e-85  Score=725.59  Aligned_cols=474  Identities=24%  Similarity=0.356  Sum_probs=415.9

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~-~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (621)
                      +|+||||+|||++|++++|.+|+++.+.+.+++.. +.+||.||||++||+++++++++++++.++++.+|.+|||++| 
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~~   81 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQR   81 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEECS
T ss_pred             cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCC
Confidence            58999999999999999999999999999999865 4899999999999999999999999887766778999999998 


Q ss_pred             CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                      +++++||++ |+|+         +|+|.|+|.|+.++++++.+..  +.++++||.++++.++++||+|+++|+||+|++
T Consensus        82 ~~~~~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  152 (495)
T 2dpn_A           82 ETTLLWDRKTGKPL---------HNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKAR  152 (495)
T ss_dssp             SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHH
T ss_pred             ccEEEEECCCCcCC---------ccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHH
Confidence            999999998 9999         8999999999999999998764  578999999999999999999999999999999


Q ss_pred             hcc----eecchhHHhhhhcc--ccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       210 ~~~----~l~~~dyl~~~LTG--~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      +++    |++++|||.|+|||  +.. ++.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       153 ~~~~~~~~~~~~d~l~~~LTG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP-  213 (495)
T 2dpn_A          153 AEGGGVAFGTVDTWLIWNLTGGKVHA-TDPTN--------------ASRTLLFNLHTLAWDPELLEALGIPAAL---LP-  213 (495)
T ss_dssp             HHHTCEEEECHHHHHHHHHTTTSCCE-ECHHH--------------HTTSSSEETTTTEECHHHHHHTTCCSTT---CC-
T ss_pred             HhcCCcEEECHHHHHHHHhcCCCeEE-EehHH--------------hHhhcCccCccCCcCHHHHHHcCCCHHH---CC-
Confidence            988    99999999999999  443 34443              5688999999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  363 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~  363 (621)
                         +++++++++|. ++++   .+|  +|+||++|++|++|+++|+ |..+|              +++++++|||+++.
T Consensus       214 ---~i~~~~~~~G~-~~~~---~~G--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  269 (495)
T 2dpn_A          214 ---EVRPSDGDFGE-TLPE---LLG--APVPIRGVLGDQQAALFGQ-AALGG--------------GEGKCTYGTGAFLL  269 (495)
T ss_dssp             ---EECCTTSCCCB-CCHH---HHS--SCCBEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---CccCCCCeeEe-ccHH---HcC--CCCeEEEECcHHHHHHHhC-CCCCC--------------CcEEEEccHhhhhh
Confidence               68889999997 9987   588  8999999999999999998 66655              58999999999998


Q ss_pred             ceeC-cccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 007010          364 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  439 (621)
Q Consensus       364 ~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  439 (621)
                      +.++ ++..++ +.+..++ +..++  .|.++++++++|.+++|+++ ++..            +.|+++++++++.   
T Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~w~~~-~~~~------------~~~~~l~~~a~~~---  332 (495)
T 2dpn_A          270 LNTGKRPVLSEKGLLATVA-WSLGGRATYALEGSLFVAGAAVGWLKE-VGLI------------RESAEVEALAASV---  332 (495)
T ss_dssp             EECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHH-TTSS------------SSTTTHHHHHHTC---
T ss_pred             hhcCCccccCCCCceEEEE-EEcCCCCEEEEechHHhHHHHHHHHHH-cCCc------------cCHHHHHHHHhhC---
Confidence            8885 455444 2222222 33344  79999999999999999999 6421            2356777766542   


Q ss_pred             cCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007010          440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  518 (621)
Q Consensus       440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I  518 (621)
                             ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||.+|++++.|++ .|.++++|
T Consensus       333 -------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~~---rAvlEgia~~~~~~~~~l~~~~g~~~~~i  402 (495)
T 2dpn_A          333 -------EDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLA---RAALEGVAFQVRDVVLAMEEEAGVRLKVL  402 (495)
T ss_dssp             -------SCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHTTTSCCCCCE
T ss_pred             -------CCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence                   25889999999999999999999999999999999999964   59999999999999999987 47788999


Q ss_pred             EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHH
Q 007010          519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  598 (621)
Q Consensus       519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~  598 (621)
                      +++||+++|++|+||+||++|+||+++...|++|+|||++|++++|.| |++++. ++....++|+|  +++. +.|+++
T Consensus       403 ~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~-~~~~~~-~~~~~~~~~~P--~~~~-~~y~~~  477 (495)
T 2dpn_A          403 KADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGAL-SPEDVA-GRFREAERFLP--TMPE-GRREAL  477 (495)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSC-CHHHHH-HHCCEEEEECC--CSCH-HHHHHH
T ss_pred             EEecccccCHHHHHHHHHHhCCeeEecCCcccHHHHHHHHHHhhcCcC-CHHHHH-HhcCCCeEEcc--CCCH-HHHHHH
Confidence            999999999999999999999999999999999999999999999999 999874 66667789999  8887 899999


Q ss_pred             HHHHHHHHHHHHHH
Q 007010          599 YLIFRELFEQQVSQ  612 (621)
Q Consensus       599 y~~y~~l~~~~~~~  612 (621)
                      |++|+++|++++.|
T Consensus       478 ~~~~~~~~~~~~~~  491 (495)
T 2dpn_A          478 YRRWREAVERAKGW  491 (495)
T ss_dssp             HHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999988765

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=100.00  E-value=3e-83  Score=711.42  Aligned_cols=456  Identities=20%  Similarity=0.240  Sum_probs=398.1

Q ss_pred             CCeEEEEecCccceeeEEEc-CCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      ++|+||||+|||++|++++| .+|+++.+.+.+++     ++.||||++||++++++++++    +. ..+|.+|||++|
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~~G~i~~~~~~~~~-----g~~e~d~~~~~~~i~~~l~~~----~~-~~~I~~Igis~q   73 (515)
T 3i8b_A            4 RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHP-----NGTSVDPSYWWSAFQEAAEQA----GG-LDDVSALAVGGQ   73 (515)
T ss_dssp             SCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----SSSEECTHHHHHHHHHHHHHT----TC-STTEEEEEEEEC
T ss_pred             CcEEEEEEeccccEEEEEEECCCCeEEEEEEEeCC-----CCceECHHHHHHHHHHHHHhc----CC-ccCceEEEEeCC
Confidence            46999999999999999999 89999999988874     789999999999988888654    33 578999999998


Q ss_pred             -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC------------------hhHHhhhCCCCCCCChH
Q 007010          133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN------------------SPVLQYCGGAVSPEMQP  193 (621)
Q Consensus       133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~------------------~~~~~~tG~~~~~~~~~  193 (621)
                       +++|+||++|+|+         +|+|+|+|+|+.++++++++..                  ++++++||+++++.+++
T Consensus        74 ~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~  144 (515)
T 3i8b_A           74 QHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTL  144 (515)
T ss_dssp             SSCBEEECTTSCBC---------SCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHH
T ss_pred             cceEEEECCCCCCc---------CCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHH
Confidence             9999999999999         8999999999999999998752                  57899999999999999


Q ss_pred             HHHHHHHHhcchhHHhhcceecchhHHhhhhcccc------------ccccccccccccccccchhhcccccccccCCCC
Q 007010          194 PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD------------TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEAC  261 (621)
Q Consensus       194 ~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~------------~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~  261 (621)
                      +||+|+++|+||+|+++.+|++++|||.|+|||+.            ..++.|              ++|+|++||++++
T Consensus       145 ~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~~~td~s--------------~As~t~l~d~~~~  210 (515)
T 3i8b_A          145 TKVAWVAENEPENVKKIAAICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRS--------------DASGTIYYDAASN  210 (515)
T ss_dssp             HHHHHHHHHCHHHHTTCSEEECHHHHHHHHHTTCCCCCTTSCCCGGGCEEEHH--------------HHTTSSSEETTTT
T ss_pred             HHHHHHHHcChHHHHHHheecCHHHHHHHHhcCCCcccccccccccceeecHH--------------HhhcccCeeCCcC
Confidence            99999999999999999999999999999999982            123333              3678899999999


Q ss_pred             CCCHHHHHHc-CCC-----------ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhccc
Q 007010          262 GWDDEFWEEI-GLG-----------DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV  329 (621)
Q Consensus       262 ~Ws~~ll~~~-gi~-----------~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~  329 (621)
                      +|++++|+.+ ||+           ..   .||    +++++++++|. |++++|+++||++||||++|++|++|+++|+
T Consensus       211 ~W~~~ll~~~~gi~~~~~~~~~~~~~~---~LP----~i~~~~~~~G~-v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~  282 (515)
T 3i8b_A          211 EYRRDLIAMVLEAAEGAKAAQSHAEAI---VLP----TVLGPRDAAPV-KADPAIAGKNVEGGCLLAPGGGDNAMASLGL  282 (515)
T ss_dssp             EECHHHHHHHHHHHHCHHHHHHHHHHS---BCC----EEECTTCCCSS-CCCTTTTTTTSTTCCEECCCEEHHHHHHHHT
T ss_pred             ccCHHHHHhhcCCCcccccccccchHH---HCC----CCcCCcCcccC-cCHHHHHHhCCCCCCeEEEECchHHHHHhhC
Confidence            9999999998 998           43   346    68899999997 9999999999999999999999999999998


Q ss_pred             ccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccCC-ccccccccccCCeeEEcccccchhHHHHHHHHhh
Q 007010          330 MESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPG-VWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH  408 (621)
Q Consensus       330 ~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~  408 (621)
                       | .++              +++++++|||+++..+++++..++. .+..++ +. ++.|+.+++++++|.+++|+++.+
T Consensus       283 -g-~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~gg~~l~w~~~~~  344 (515)
T 3i8b_A          283 -G-MAV--------------GDVSISLGTSGVAAAISENPTYDLTGAVSGFA-DC-TGHYLPLACTINGSRILDAGRAAL  344 (515)
T ss_dssp             -T-CCT--------------TEEEEEESSSEEEEECBSSCCCCTTSCSEEEE-CS-SSSEEEEEEESCSTHHHHHHHHHH
T ss_pred             -C-CCC--------------CcEEEEechhhhhhcccCccccCCCCcEEeee-cC-CCCEEEeeecccHHHHHHHHHHHh
Confidence             6 655              5899999999999988888877653 333332 22 778999999999999999999875


Q ss_pred             hhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCC-CHHHHH
Q 007010          409 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS-SEKQLA  487 (621)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~-~~~~~~  487 (621)
                      .             . .|++|+++++++         |++++|++|+|||.|+|+|+| +++||+|+|++..| ++.|+ 
T Consensus       345 ~-------------~-~~~~l~~~a~~~---------~~g~~gl~~lP~~~Ger~P~~-~~arg~~~Gl~~~~~~~~~l-  399 (515)
T 3i8b_A          345 G-------------V-DYDELAKLAFAS---------KPGANGITLVPYFDGERTPNR-PNATATFSGMTLANTTRENL-  399 (515)
T ss_dssp             T-------------C-CHHHHHHHHHHS---------CTTGGGCEEECCTTCBTTTTB-TTCCCEEESCCTTTCSHHHH-
T ss_pred             C-------------C-CHHHHHHHHHhC---------CCCCCCeEEecCCCCCcCCCC-cCcceEEecCCCCCCCHHHH-
Confidence            3             2 378888887763         368899999999999999976 99999999999999 99985 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccC
Q 007010          488 LLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS  567 (621)
Q Consensus       488 ~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~  567 (621)
                        +||++||+||.+|++++.|++.|.++++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.+.
T Consensus       400 --~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~  477 (515)
T 3i8b_A          400 --ARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLSGET  477 (515)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCHHHHHHHHHHhCCceEecCCcccHHHHHHHHHHHHcCCCC
Confidence              569999999999999999999888999999999999999999999999999999999999999999999999999988


Q ss_pred             CHHHHHHHhh-cCCcEEcCCCChhhHHHHHHHH
Q 007010          568 SLIEAMKAMN-AAGQVIHPSKDPKVKKYHDAKY  599 (621)
Q Consensus       568 s~~ea~~~~~-~~~~~~~P~~~~~~~~~y~~~y  599 (621)
                      ++++    +. ....+|+|.++++.++.|++.|
T Consensus       478 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  506 (515)
T 3i8b_A          478 EPPA----WQLTIDGVETGEPTEAVYEAYAKAR  506 (515)
T ss_dssp             SCCC----CCCCEEEEECCCCCHHHHHHHHHHH
T ss_pred             ChhH----hhhhccccCCCCccHHHHHHHHHHh
Confidence            7653    32 2356788866666666655554

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.8e-76  Score=649.02  Aligned_cols=452  Identities=14%  Similarity=0.141  Sum_probs=360.7

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (621)
                      |+|+||||+|||++|++++|.+|+++.+.+.+++.++.+||+||||++||+++++++++++ +     .+|.+||||+| 
T Consensus         5 m~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~-----~~I~aIgis~~~   78 (482)
T 3h6e_A            5 TGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D-----HPVTTIVPVGHG   78 (482)
T ss_dssp             ---CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T-----SCCCEEEEEECS
T ss_pred             hceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h-----cCCCEEEEecCc
Confidence            5799999999999999999999999999999998766899999999999999999999886 2     57999999998 


Q ss_pred             CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCC--ChHHHHHHHHHhcchhHHhh
Q 007010          133 CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPE--MQPPKLLWVKENLQESWSMV  210 (621)
Q Consensus       133 ~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~--~~~~kl~Wl~~~~pe~~~~~  210 (621)
                      +++|+|| +|+||         +|+|+|+|+|+.++++++.+... .+++||+++++.  ++++||+|+++|+||+|+|+
T Consensus        79 ~~~v~~D-~G~pl---------~~ai~w~D~R~~~~~~~l~~~~~-~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~  147 (482)
T 3h6e_A           79 AGIAALT-DGRLA---------FPPLDYEQSIPEAVMADYRSQRD-PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANA  147 (482)
T ss_dssp             SCEEEEE-TTEEC---------SCCBCTTSCCCHHHHHHHHTTCC-CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSC
T ss_pred             CCEEEEC-CCCEe---------ccccccCCcccHHHHHHHHhhCh-HHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcC
Confidence            9999999 99999         89999999999999999987653 389999999997  89999999999999999999


Q ss_pred             cceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCccccc
Q 007010          211 FRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF  290 (621)
Q Consensus       211 ~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~  290 (621)
                      + |++++|||.|+|||+.. ++.|+             .+|+|++||+++++|+ ++|+.+||+ .+   ||    ++++
T Consensus       148 ~-~l~~~dyl~~~LTG~~~-td~s~-------------~As~t~l~d~~~~~W~-~ll~~~gi~-~~---LP----~v~~  203 (482)
T 3h6e_A          148 T-LLPWAQYWAWFLTGRAV-SEVTS-------------LGCHSDLWDPQDGDFS-PMAKRLGWA-AR---FA----PIVR  203 (482)
T ss_dssp             E-EEEHHHHHHHHTTSCCC-EEHHH-------------HTTTCSSEETTTTEEC-HHHHHTTCG-GG---BC----CEEC
T ss_pred             E-EEccHHHHHHHHhCCee-eecch-------------hhhccCCccCCcCcHH-HHHHHcCCH-Hh---CC----CCcC
Confidence            9 99999999999999875 33332             1457889999999999 599999998 43   47    6889


Q ss_pred             CCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcc---cccccCccchhhhhhhhhhccceEEEEecccceecceeC
Q 007010          291 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG---VMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR  367 (621)
Q Consensus       291 ~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg---~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~  367 (621)
                      +++++|+ |++++|+++||++|+||++|++|++|+++|   + |..++|             ..+++++|||.+++...+
T Consensus       204 ~~~~~G~-l~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~~g~-g~~~~g-------------~~~~~s~GT~~~~~~~~~  268 (482)
T 3h6e_A          204 AGDTVGA-LLPAIAERTGLSPDVQVLAGLHDSNAALLAARGF-AEIADN-------------EATVLSTGTWFIAMRLPA  268 (482)
T ss_dssp             TTSEEEE-CCHHHHHHHTCCTTCEEECCEEHHHHHHHHHTTS-TTTTTS-------------SEEEEECSSSEEEEEECS
T ss_pred             CCceeee-eCHHHHHHhCCCCCCEEEEeCcHHHHHHhhhhcc-CCcCCC-------------CEEEEECCceeEEEEecC
Confidence            9999997 999999999999999999999999999999   7 655553             236889999987655555


Q ss_pred             ---c-ccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC
Q 007010          368 ---N-KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP  443 (621)
Q Consensus       368 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p  443 (621)
                         + +..++.. ..++. .....|.+++...++|.+++|+++......++          .++..+.+++..       
T Consensus       269 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~----------~~~~~~~~a~~~-------  329 (482)
T 3h6e_A          269 TPVDTATLPEAR-DCLVN-VDVHGRPVPSARFMGGREIETLIEIDTRRVDI----------KPDQPALLAAVP-------  329 (482)
T ss_dssp             SCCCGGGCCGGG-TEEEE-ECTTSCEEEEEEECHHHHHHHHHCSGGGCTTC----------GGGHHHHHHTHH-------
T ss_pred             ccCCccccchhh-ceeec-cccccccccchhhhhHHHHHHHHHhccccccc----------ccchhhHHHhcc-------
Confidence               3 3233311 11111 11234667777889999999997543210000          011112222221       


Q ss_pred             CccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCcCEEEEe
Q 007010          444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQG--IAYGTRHIVEHCNAHGHKIDTLLAC  521 (621)
Q Consensus       444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEg--ia~~~r~~l~~l~~~g~~~~~I~~~  521 (621)
                        +++++|++|+|||+|+|+|+||+  ||+|+|++.    .|   ++||++|+  +||++|++++.|++.    ++|+++
T Consensus       330 --~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~---l~RA~lE~~Gia~~~r~~l~~~~~~----~~i~~~  394 (482)
T 3h6e_A          330 --EVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DW---FERRAAACLYAALVADTALDLIGST----GRILVE  394 (482)
T ss_dssp             --HHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SH---HHHHHHHHHHHHHHHHHHHHHTTCC----SEEEEE
T ss_pred             --ccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HH---HHHHHHHHHhHHHHHHHHHHHhcCC----CeEEEe
Confidence              24789999999999999999987  999999998    45   56799995  999999999998753    789999


Q ss_pred             cCCCCCHHHHHHHHHh-hCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHH
Q 007010          522 GGLAKNPLFLQQHADI-IGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYL  600 (621)
Q Consensus       522 GGga~s~~w~Qi~Adv-lg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~  600 (621)
                      ||++||++|+||+||| ||+||+++...|++++|||++|+++.-.            .....+.|..+..-+..+++.++
T Consensus       395 GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~lA~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~  462 (482)
T 3h6e_A          395 GRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRP------------QGELVRIEPLDTGSWADLDTYRN  462 (482)
T ss_dssp             SGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHHHHCTTCCC------------SSCEEECCCCCC----CHHHHHH
T ss_pred             CCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHHHhCccccc------------ccccCcccccccccchHHHHHHH
Confidence            9999999999999999 9999999999999999999999987321            12456667444112234555566


Q ss_pred             HHHHHHH
Q 007010          601 IFRELFE  607 (621)
Q Consensus       601 ~y~~l~~  607 (621)
                      +|++..+
T Consensus       463 ~w~~~~~  469 (482)
T 3h6e_A          463 RWQAEVE  469 (482)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            6665543

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=100.00  E-value=5.4e-75  Score=643.77  Aligned_cols=463  Identities=16%  Similarity=0.161  Sum_probs=372.9

Q ss_pred             CCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeec----c-ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 007010           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ----I-WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG  126 (621)
Q Consensus        52 m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~----~-~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~a  126 (621)
                      |.|+++||||+|||++|++++|.+|+++...+.++.    . .+.+|+.|||+++||+++.++++++...    ..+|.+
T Consensus         1 m~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~----~~~i~~   76 (489)
T 2uyt_A            1 MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA----GIAIDS   76 (489)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT----TCCCCE
T ss_pred             CCcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC----CCCceE
Confidence            667899999999999999999999998877766553    1 2378999999999999999999988652    357999


Q ss_pred             EEEcCC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhc
Q 007010          127 VGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENL  203 (621)
Q Consensus       127 Igis~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~  203 (621)
                      ||||+| +++++||++|+|+         +|+|.|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+
T Consensus        77 Igis~q~~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~  147 (489)
T 2uyt_A           77 IGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQ  147 (489)
T ss_dssp             EEEEECSSCEEEECTTSCEE---------SCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHC
T ss_pred             EEEecCcccEEEECCCCCCc---------cCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcC
Confidence            999998 9999999999999         8899999999999999998653  578999999999999999999999999


Q ss_pred             chhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010          204 QESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  283 (621)
Q Consensus       204 pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~  283 (621)
                      ||+|++++++++++|||.|+|||+... +.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       148 P~~~~~~~~~l~~~dyl~~~LTG~~~~-d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP-  208 (489)
T 2uyt_A          148 PELIPHIAHALLMPDYFSYRLTGKMNW-EYTN--------------ATTTQLVNINSDDWDESLLAWSGANKAW---FG-  208 (489)
T ss_dssp             GGGGGGCCEEEEHHHHHHHHHHSCCCC-BHHH--------------HGGGTCEETTTTEECHHHHHHHTCCGGG---SC-
T ss_pred             chHHHHhhhccCcHHHHHHHHhCCccc-eehh--------------hhhhcccccCcCccCHHHHHHcCCCHHH---CC-
Confidence            999999999999999999999998752 4433              5688999999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEE-echhhhhhhcccccccCccchhhhhhhhhhccceEEEEeccccee
Q 007010          284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCH  362 (621)
Q Consensus       284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~  362 (621)
                         +++++++++|+ ++++    .|  +|+||++ |++|++|+++|+ |...+              +++++++|||+++
T Consensus       209 ---~i~~~~~~~G~-~~~~----~~--~g~pV~~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~  263 (489)
T 2uyt_A          209 ---RPTHPGNVIGH-WICP----QG--NEIPVVAVASHDTASAVIAS-PLNGS--------------RAAYLSSGTWSLM  263 (489)
T ss_dssp             ---CCBCTTCEEEE-EECT----TC--CEEEEECCCCBHHHHHHHHS-CCCST--------------TEEEEEESSSEEE
T ss_pred             ---CccCCCcceee-eecc----cC--CCCcEEEECchHHHHHHhcC-CCCCC--------------CcEEEEEchHhhc
Confidence               68889999996 7532    23  7899997 889999999998 65544              5899999999998


Q ss_pred             cceeCcccccCC-ccc-cccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhc
Q 007010          363 MAVSRNKLFIPG-VWG-PFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER  440 (621)
Q Consensus       363 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  440 (621)
                      ...++++..++. ... .++++..++.|..++.+..     .|+++.+...         .+.+.|+++.+.+ +     
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~W~~~~~~~~---------~~~~~~~~l~~~a-~-----  323 (489)
T 2uyt_A          264 GFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMG-----LWLLQRVLQE---------RQINDLPALIAAT-Q-----  323 (489)
T ss_dssp             EEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEECT-----THHHHHHHHH---------TTCCCHHHHHHHH-T-----
T ss_pred             ccccCCCccCHHHHhhcceeecCCCCeEEEehhHhH-----HHHHHHhhcc---------cchhhHHHHHHHh-c-----
Confidence            888887655431 221 2333455788988877652     5998876421         0123455554432 2     


Q ss_pred             CCCCccCCCCCeEEccccCCCCCCCCCCC-----CceeEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 007010          441 NSPFVAALTEDIHVLPDFHGNRSPIADPK-----SKGIICGM--TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HG  512 (621)
Q Consensus       441 ~~p~~~~g~~gl~flP~l~Ger~P~~d~~-----arg~f~Gl--~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g  512 (621)
                       .   +|++++ +|+|    ++.|+|+|.     .+|.|.|+  +..|++.|+   +||++||+||.+|++++.|++ .|
T Consensus       324 -~---~~~~~~-l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~l---~RAvlEgia~~~r~~~~~l~~~~g  391 (489)
T 2uyt_A          324 -A---LPACRF-IINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAEL---ARCIFDSLALLYADVLHELAQLRG  391 (489)
T ss_dssp             -T---SCSSSS-CCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -c---CCCcCe-eECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence             1   246654 4788    577888887     48889888  478888885   569999999999999999987 57


Q ss_pred             CCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhcccc---CCHHHHHHHhhcCCcEEcCCCCh
Q 007010          513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY---SSLIEAMKAMNAAGQVIHPSKDP  589 (621)
Q Consensus       513 ~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~---~s~~ea~~~~~~~~~~~~P~~~~  589 (621)
                      .++++|+++||++||++|+||+||++|+||+++. .|++++|||++|+.+.+..   ++++++++.+.. .++|+|  |+
T Consensus       392 ~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~e~~alGaa~~A~~a~~~~~~~~~~~~~~~~~~~-~~~~~P--~~  467 (489)
T 2uyt_A          392 EDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTLDELNNVDDFRQVVSTTAN-LTTFTP--NP  467 (489)
T ss_dssp             CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC-TTHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHSC-CEEECC--CT
T ss_pred             CCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC-ccHhHHHHHHHHHHHcCccccHHHHHHHHHhhCC-CeEECC--Cc
Confidence            8899999999999999999999999999999876 7999999977777766544   445555555544 589999  99


Q ss_pred             hhH-HHHHHHHHHHHHHHH
Q 007010          590 KVK-KYHDAKYLIFRELFE  607 (621)
Q Consensus       590 ~~~-~~y~~~y~~y~~l~~  607 (621)
                      +++ +.|+++|++|++|.+
T Consensus       468 ~~~~~~Y~~~~~~y~~~~~  486 (489)
T 2uyt_A          468 DSEIAHYVALIHSTRQTKE  486 (489)
T ss_dssp             TSHHHHHHHHTTC------
T ss_pred             chHHHHHHHHHHHhhchhh
Confidence            999 999999999998764

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=99.64  E-value=1.2e-15  Score=155.08  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=96.6

Q ss_pred             cccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCce
Q 007010          393 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKG  472 (621)
Q Consensus       393 ~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg  472 (621)
                      +...+|..++|+.+.+.             .+ ++++++++.+.            .     .|+..|+|++.   .+++
T Consensus       127 ca~GtG~~le~~a~~lg-------------~~-~~el~~la~~~------------~-----~p~~~~~~c~v---fa~s  172 (270)
T 1hux_A          127 CAAGTGRFLDVMANILE-------------VK-VSDLAELGAKS------------T-----KRVAISSTCTV---FAES  172 (270)
T ss_dssp             CCTTSHHHHHHHHHHHT-------------CC-TTTHHHHHTTC------------C-----SCCCCCCCSHH---HHHH
T ss_pred             cchhhHHHHHHHHHHhC-------------CC-HHHHHHHHhhC------------C-----CCCCcccccch---hHhH
Confidence            33345789999988653             22 45666655331            1     46667888763   3567


Q ss_pred             eEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-c
Q 007010          473 IICGMT-LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-S  550 (621)
Q Consensus       473 ~f~Gl~-~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~  550 (621)
                      .++++. ..++++|++   |+++|+|++.+..+   ++..+. .++|+++||+++|+.|+|+++|++|+||.++...+ .
T Consensus       173 ~v~~l~~~g~~~~di~---~av~e~Va~~i~~~---~~~~~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~  245 (270)
T 1hux_A          173 EVISQLSKGTDKIDII---AGIHRSVASRVIGL---ANRVGI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYN  245 (270)
T ss_dssp             HHHHHHHTTCCHHHHH---HHHHHHHHHHHHHH---HHTTCC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGH
T ss_pred             HHHHHhhCCCCHHHHH---HHHHHHHHHHHHHH---HhcCCC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchH
Confidence            777775 777888865   59999999997444   444333 47899999999999999999999999999988777 5


Q ss_pred             hhHHHHHHHHhh
Q 007010          551 VLLGAAILGAVA  562 (621)
Q Consensus       551 ~alGAA~lA~~a  562 (621)
                      +|+|||++|...
T Consensus       246 ~AlGAAl~A~~~  257 (270)
T 1hux_A          246 GALGAALYAYKK  257 (270)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHh
Confidence            999999999764

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=98.57  E-value=6.3e-06  Score=82.91  Aligned_cols=72  Identities=14%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL  558 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~l  558 (621)
                      +.++..+++.+++.++-.++..++   +.+ .++.|+++||+++++.+.+++.+.|+.||.++. ..+++|+|||+.
T Consensus       199 ~~~~~~~~~~~~~~i~~~i~~~l~---~~~-~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~  271 (272)
T 3h1q_A          199 HREIMRVVRPVIEKMALIVKEVIK---NYD-QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALF  271 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---TSC-SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhc
Confidence            455555666788877755555443   222 377899999999999999999999999999866 456889999975

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=98.30  E-value=1.6e-06  Score=89.82  Aligned_cols=91  Identities=20%  Similarity=0.359  Sum_probs=71.7

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      +|+||||+|+|++|++++|.+|+++...+.+++       .+++++++++.+.+.+++++++.+.+..+|.+|||+. .+
T Consensus         6 ~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~-pG   77 (326)
T 2qm1_A            6 KKIIGIDLGGTTIKFAILTTDGVVQQKWSIETN-------ILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGT-PG   77 (326)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------CTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC-------CCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEec-cc
Confidence            699999999999999999999999998877765       2357889999999999999988766667899999843 33


Q ss_pred             eEEecCC-CCceeecCCCCCCcceeEEcCc
Q 007010          135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDH  163 (621)
Q Consensus       135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~  163 (621)
                        ++|.+ |..+.        .|.+.|.+.
T Consensus        78 --~vd~~~g~v~~--------~~~l~w~~~   97 (326)
T 2qm1_A           78 --SVDIEKGTVVG--------AYNLNWTTV   97 (326)
T ss_dssp             --EEETTTTEEEC--------BGGGTBCSC
T ss_pred             --ceeCCCCEEEe--------cCCCCccCC
Confidence              45654 65542        344567654

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=98.21  E-value=3.1e-06  Score=88.44  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCC-CEEEEEE
Q 007010           51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGE-EVKGVGF  129 (621)
Q Consensus        51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~-~I~aIgi  129 (621)
                      .||++|+||||+|+|++|++++|.+|+++.+.+.+..     .+.+++++++++.+.+++++++++.+.... +|.+|||
T Consensus         2 ~~M~~~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi   76 (347)
T 2ch5_A            2 QFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLST-----NHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGL   76 (347)
T ss_dssp             CSSSCEEEEEEECTTCEEEEEEETTSCEEEEEEECCC-----CHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEE
T ss_pred             cccceEEEEEEcCccceEEEEEeCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEE
Confidence            3444599999999999999999999999987766321     123468999999999999999987766555 7888888

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=98.20  E-value=4.5e-06  Score=85.74  Aligned_cols=73  Identities=21%  Similarity=0.359  Sum_probs=56.9

Q ss_pred             CCCC--CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCE--EE
Q 007010           51 ARSR--SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV--KG  126 (621)
Q Consensus        51 ~m~~--~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I--~a  126 (621)
                      +|+|  +|+||||+|+|++|++++|.+|+++.+.+.+..     . ..++++++++.+.+++++++++.+.++.+|  .+
T Consensus         5 ~m~~~~~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~-----~-~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~   78 (305)
T 1zc6_A            5 TMNPSIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGGAS-----A-LSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACA   78 (305)
T ss_dssp             ---CCCCEEEEEEECSSCEEEEEEETTCCEEEEEEESCC-----C-GGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEE
T ss_pred             hhcccCCEEEEEEcCccceEEEEEcCCCCEEEEEeCCCC-----C-cccCHHHHHHHHHHHHHHHHHhcCCChhhhccce
Confidence            5654  599999999999999999999999987765321     0 236899999999999999998877666676  56


Q ss_pred             EEE
Q 007010          127 VGF  129 (621)
Q Consensus       127 Igi  129 (621)
                      |||
T Consensus        79 igi   81 (305)
T 1zc6_A           79 IGL   81 (305)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            666

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=98.11  E-value=4.9e-06  Score=86.14  Aligned_cols=89  Identities=29%  Similarity=0.448  Sum_probs=68.0

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (621)
                      |+|+||||+|+|++|++++|.+|+++.+.+.++         +++++++++.+.+.++++.++     .+|.+|||+. .
T Consensus         1 M~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-----~~i~gigi~~-p   65 (321)
T 3vgl_A            1 MGLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT---------PPTAEGIVDAICAAVAGASEG-----HDVEAVGIGA-A   65 (321)
T ss_dssp             -CEEEEEEECSSEEEEEEECTTCCBCCCEEEEC---------CSSHHHHHHHHHHHHHHHHTT-----CCEEEEEEEE-S
T ss_pred             CcEEEEEEECCCEEEEEEECCCCCEEEEEEeeC---------CCCHHHHHHHHHHHHHHHHhh-----cCceEEEEec-c
Confidence            369999999999999999999999998777665         257999999999999988753     4789999843 3


Q ss_pred             ceEEecCC-CCceeecCCCCCCcceeEEcCcchHH
Q 007010          134 SLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVK  167 (621)
Q Consensus       134 ~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~  167 (621)
                      +  ++|.+ |....        .|.+.|.+-.-.+
T Consensus        66 G--~vd~~~g~v~~--------~~~l~w~~~~l~~   90 (321)
T 3vgl_A           66 G--YVDDKRATVLF--------APNIDWRHEPLKD   90 (321)
T ss_dssp             S--EECTTSSCEEE--------CSSSCCEEECHHH
T ss_pred             c--cEeCCCCEEEe--------CCCCCCcCCCHHH
Confidence            4  56765 55553        4566787655433

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.09  E-value=1.1e-05  Score=87.10  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++        .++++++++.+.+.+++++++.+.+..+|.+|||+. .+
T Consensus       108 ~~~lGIDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG  178 (429)
T 1z05_A          108 WQFLSMRLGRGYLTIALHELGGEVLIDTKIDIH--------EIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PG  178 (429)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSCEEEEEEEECC--------CCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SS
T ss_pred             CEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC--------CCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEec-cC
Confidence            589999999999999999999999998877764        357999999999999999988776667899999843 33


Q ss_pred             eEEecCC-CCceeecCCCCCCcceeEEcCcc
Q 007010          135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDHR  164 (621)
Q Consensus       135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~R  164 (621)
                        ++|.+ |..+.        .|.+.|.+-.
T Consensus       179 --~vd~~~g~v~~--------~~~l~w~~~~  199 (429)
T 1z05_A          179 --LVNSEQGIVLQ--------MPHYNVKNLA  199 (429)
T ss_dssp             --EEETTTTEEEE--------CSSSBCSSBC
T ss_pred             --cEeCCCCeEee--------cCCCCCCCCC
Confidence              56764 66653        3556687654

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=98.03  E-value=8.6e-06  Score=87.14  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++        +++++++++.+.+++++++++.+.+..+|.+|||+. .+
T Consensus        85 ~~~lgiDiG~t~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG  155 (406)
T 1z6r_A           85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELA--------LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-PG  155 (406)
T ss_dssp             CEEEEEEEETTEEEEEEEETTCCEEEEEEEECC--------SSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-SS
T ss_pred             cEEEEEEEcCCEEEEEEEcCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEe-ec
Confidence            589999999999999999999999988777663        467888999999999999987666667899999843 33


Q ss_pred             eEEecCC-CCce
Q 007010          135 LVAVDAD-GSPV  145 (621)
Q Consensus       135 ~v~vD~~-G~pl  145 (621)
                        ++|.+ |..+
T Consensus       156 --~vd~~~g~v~  165 (406)
T 1z6r_A          156 --IIDTENGIVH  165 (406)
T ss_dssp             --EEETTTTEEE
T ss_pred             --CEeCCCCEEe
Confidence              45665 6555

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.02  E-value=8.6e-06  Score=86.37  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=70.5

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|+|++|++++|.+|+++...+.+++       .+++++++++.+.+.+++++++.+.+..+|.+|||+. .+
T Consensus        87 ~~~lGIDiGgt~i~~~l~d~~G~vl~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG  158 (380)
T 2hoe_A           87 AYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA-PG  158 (380)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SS
T ss_pred             CeEEEEEECCCEEEEEEECCCCCEEEEEEEccC-------CCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEe-ec
Confidence            589999999999999999999999998877765       2458999999999999999887655557788888843 33


Q ss_pred             eEEecC-CCCceeecCCCCCCcceeEEcCc
Q 007010          135 LVAVDA-DGSPVSVSWNGDSRRNIIVWMDH  163 (621)
Q Consensus       135 ~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~  163 (621)
                        ++|. +|..+.        .|.+.|.+-
T Consensus       159 --~vd~~~g~v~~--------~~~l~w~~~  178 (380)
T 2hoe_A          159 --PIDTERGIIID--------PRNFPLSQI  178 (380)
T ss_dssp             --CEETTTTEECC--------CSSCTTBTS
T ss_pred             --cEECCCCEEec--------cCCCCCcCC
Confidence              3565 466552        345567654

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=97.99  E-value=1.7e-05  Score=82.79  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++         ++++++++.+.+.+++++++.+....+|.+|||+. .+
T Consensus        30 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~-pG   99 (343)
T 2yhw_A           30 LSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNP---------KTYEERINLILQMCVEAAAEAVKLNCRILGVGIST-GG   99 (343)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSCEEEEEEEECC---------SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEECCCCcEEEEEEEcCC---------CCHHHHHHHHHHHHHHHHHhcccccCceEEEEEec-cc
Confidence            589999999999999999999999988766553         47889999999999998876443446798998843 33


Q ss_pred             eEEecCC-CCce
Q 007010          135 LVAVDAD-GSPV  145 (621)
Q Consensus       135 ~v~vD~~-G~pl  145 (621)
                        ++|.+ |..+
T Consensus       100 --~vd~~~g~v~  109 (343)
T 2yhw_A          100 --RVNPREGIVL  109 (343)
T ss_dssp             --EEETTTTEEE
T ss_pred             --CEeCCCCEEE
Confidence              45654 6554

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=97.92  E-value=8.9e-06  Score=83.15  Aligned_cols=98  Identities=24%  Similarity=0.271  Sum_probs=67.0

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C-
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C-  133 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~-  133 (621)
                      |+||||+|+|++|++++|.+|+++.+.+.+++     .+.+++++++++.+.+.+++++++.    -...+||+.+. . 
T Consensus         3 ~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~----~~~igi~~~G~~~~   73 (299)
T 2e2o_A            3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPG-----NYHNVGLTRAIENIKEAVKIAAKGE----ADVVGMGVAGLDSK   73 (299)
T ss_dssp             CEEEEEECSSCEEEEEECTTSCEEEEEEESCC-----CHHHHCHHHHHHHHHHHHHHHHTSC----CSEEEEEETTCCSH
T ss_pred             EEEEEEeCCCcEEEEEEcCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHhcC----CCEEEEEcCCCCch
Confidence            89999999999999999999999988776654     2235789999999999999987642    12344555443 1 


Q ss_pred             -ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHH
Q 007010          134 -SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE  170 (621)
Q Consensus       134 -~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~  170 (621)
                       +.+.+.+.-+.+        ..|++.++|.++....+
T Consensus        74 ~~~~~l~~~l~~~--------~~pv~v~ND~~aaa~~e  103 (299)
T 2e2o_A           74 FDWENFTPLASLI--------APKVIIQHDGVIALFAE  103 (299)
T ss_dssp             HHHHHHHHHHTTS--------SSEEEEEEHHHHHHHHH
T ss_pred             hHHHHHHHHHHhC--------CCCEEEeCcHHHHHhhc
Confidence             122222111102        15888899988776543

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=97.87  E-value=2e-05  Score=81.58  Aligned_cols=91  Identities=19%  Similarity=0.166  Sum_probs=68.1

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (621)
                      ..|+||||+|+|++|++++|.+|+++...+.+++       ...+++++++.+.+.++++++.    ..+|.+|||+. .
T Consensus        18 ~~~~lgidiggt~i~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~----~~~i~gigi~~-p   85 (321)
T 3r8e_A           18 QGMILGIDVGGTSVKFGLVTPEGEIQNATRFMTA-------DWVNGIGFVESMKLEIGNFLKQ----YPIVKGVGIGW-P   85 (321)
T ss_dssp             -CCEEEEECCSSEEEEEEECTTCCEEEEEEEEHH-------HHHTTTCHHHHHHHHHHHHHHH----CTTCCEEEEEE-S
T ss_pred             CcEEEEEEECCCEEEEEEEcCCCcEEEEEEEeCC-------CCCCHHHHHHHHHHHHHHHHhc----cCCeeEEEEEe-c
Confidence            3689999999999999999999999998887775       2357788999999999888762    35788888843 3


Q ss_pred             ceEEecC-CCCceeecCCCCCCcceeE-EcCcchH
Q 007010          134 SLVAVDA-DGSPVSVSWNGDSRRNIIV-WMDHRAV  166 (621)
Q Consensus       134 ~~v~vD~-~G~pl~~~~~~~~~~p~i~-W~D~Ra~  166 (621)
                      +  ++|. +|..+.        .|.+. |.+-.-.
T Consensus        86 G--~vd~~~g~v~~--------~~~l~~w~~~~l~  110 (321)
T 3r8e_A           86 G--LVSLDRTKVIL--------LPNIPSVVNVPIV  110 (321)
T ss_dssp             S--EECTTSCCEEE--------BTTBCCCCSCCHH
T ss_pred             c--cEECCCCEEEe--------CCCCccccCCCHH
Confidence            4  5674 477663        34554 8775433

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=97.84  E-value=7.7e-05  Score=77.32  Aligned_cols=75  Identities=19%  Similarity=0.237  Sum_probs=59.8

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      |+||||+|+|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.++++.++.+    .+.+|||+. .+ 
T Consensus        25 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~----~~~gigi~~-pG-   90 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNEKLERVATERVPTP--------TDDYPLLLETIAGLVAKYDQEFA----CEGKIGLGL-PG-   90 (327)
T ss_dssp             CEEEEEECSSEEEEEEECTTCCEEEEEEEECC--------TTCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE-SE-
T ss_pred             EEEEEEECCCEEEEEEEeCCCcEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhcC----CccEEEEEe-ec-
Confidence            79999999999999999999999998887765        34889999999999999887643    366777732 34 


Q ss_pred             EEecC-CCCce
Q 007010          136 VAVDA-DGSPV  145 (621)
Q Consensus       136 v~vD~-~G~pl  145 (621)
                       ++|. +|...
T Consensus        91 -~vd~~~g~v~  100 (327)
T 4db3_A           91 -MEDADDATVL  100 (327)
T ss_dssp             -EECTTTCCEE
T ss_pred             -cEeCCCCEEE
Confidence             5675 47655

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=97.67  E-value=2.4e-05  Score=80.57  Aligned_cols=86  Identities=20%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++        +.+++++++.+.+.+++++++.+   .+|.+|||+. .+
T Consensus         7 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~---~~i~gigi~~-pG   74 (310)
T 3htv_A            7 NVVAGVDMGATHIRFCLRTAEGETLHCEKKRTA--------EVIAPGLVSGIGEMIDEQLRRFN---ARCHGLVMGF-PA   74 (310)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSCEEEEEEEEHH--------HHHTTCHHHHHHHHHHHHHHHHT---EEEEEEEEEE-SS
T ss_pred             CEEEEEEeCCCEEEEEEECCCCCEEEEEEecCc--------cccHHHHHHHHHHHHHHHHHhcC---CCeeEEEEec-cc
Confidence            489999999999999999999999998777664        23356688888888888776543   3588888843 34


Q ss_pred             eEEecCC-CCceeecCCCCCCcceeEEcC
Q 007010          135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMD  162 (621)
Q Consensus       135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D  162 (621)
                        ++|.+ |..+.        .|.+.|.+
T Consensus        75 --~vd~~~g~v~~--------~~~l~~~~   93 (310)
T 3htv_A           75 --LVSKDKRTIIS--------TPNLPLTA   93 (310)
T ss_dssp             --CBCTTSSCBCS--------CCSSSCCH
T ss_pred             --cEeCCCCEEEe--------CCCCCCcc
Confidence              45765 66553        45566765

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=97.41  E-value=0.00031  Score=71.71  Aligned_cols=71  Identities=17%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      |+||||+|+|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.+    ++    ..+|.+|||+. .+ 
T Consensus         5 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~~----~~----~~~i~gigi~~-pG-   66 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLPHGEIILTKSAEIS--------GSDGDQILAEMKVFL----AE----NTDVTGIAVSA-PG-   66 (297)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEEEECS--------TTCHHHHHHHHHHHH----HT----CTTCCEEEEEE-SS-
T ss_pred             EEEEEEeCCCeEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHH----hh----cCCeeEEEEec-Cc-
Confidence            79999999999999999999999998877764        235666666555443    32    24688888843 34 


Q ss_pred             EEecCC-CCce
Q 007010          136 VAVDAD-GSPV  145 (621)
Q Consensus       136 v~vD~~-G~pl  145 (621)
                       ++|.+ |..+
T Consensus        67 -~vd~~~g~v~   76 (297)
T 4htl_A           67 -YVNPKTGLIT   76 (297)
T ss_dssp             -EECTTTCEEE
T ss_pred             -ceeCCCCEEE
Confidence             56754 7665

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=97.40  E-value=0.00058  Score=68.46  Aligned_cols=79  Identities=20%  Similarity=0.354  Sum_probs=52.2

Q ss_pred             CeEEEEecCccceeeEEEcCC-CCEEEE-EEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           55 SVFLGVDVGTGSARAGLFDES-GKLLGS-ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~-g~vv~~-~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      .|+||||+|+|++|++++|.+ |+++.. .+.+++       ...+++++++.+.+.+++++++... ...+.+|||+ .
T Consensus        12 ~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~igi~-~   82 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------QPATPESVAEAVALVVAELSARPEA-PAAGSPVGVT-F   82 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEEEE-E
T ss_pred             CEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCC-------ccCCHHHHHHHHHHHHHHHHHhccc-cCccceEEEE-c
Confidence            479999999999999999976 777743 233433       1347889999999999988764321 1223344442 1


Q ss_pred             CceEEecCCCCce
Q 007010          133 CSLVAVDADGSPV  145 (621)
Q Consensus       133 ~~~v~vD~~G~pl  145 (621)
                      .|.|  | +|..+
T Consensus        83 pG~v--~-~g~v~   92 (267)
T 1woq_A           83 PGII--Q-HGVVH   92 (267)
T ss_dssp             SSCE--E-TTEEC
T ss_pred             cceE--c-CCEEE
Confidence            5543  5 56654

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=97.36  E-value=0.00016  Score=74.08  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=54.9

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      |+||||+|+|++|++++|.++ ++...+.+++        ..+++++++.+.+.+++++++.   ..+|.+|||+. .+ 
T Consensus         2 ~~lgiDiGgt~i~~~l~d~~~-~l~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~~-pG-   67 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDGKR-LLSKVVVPTP--------KEGGERVAEALAEAAERAEREA---GVRGEAIGLGT-PG-   67 (302)
T ss_dssp             CEEEEEECSSEEEEEEECSSS-BSCCEEEECC--------SSCHHHHHHHHHHHHHHHHHHH---TCCCSSEEEEE-SS-
T ss_pred             EEEEEEEcCCEEEEEEEeCCC-cEEEEEEcCC--------CCChHHHHHHHHHHHHHHHhhc---cCCceEEEEEe-cc-
Confidence            799999999999999999884 5566566654        3455889999999999988764   35677777732 34 


Q ss_pred             EEecCC-CCce
Q 007010          136 VAVDAD-GSPV  145 (621)
Q Consensus       136 v~vD~~-G~pl  145 (621)
                       ++|.+ |...
T Consensus        68 -~vd~~~g~v~   77 (302)
T 3vov_A           68 -PLDFRRGVIR   77 (302)
T ss_dssp             -CEETTTTEEC
T ss_pred             -cEeCCCCEEE
Confidence             45655 5443

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.25  E-value=0.00064  Score=68.38  Aligned_cols=72  Identities=21%  Similarity=0.242  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC-CCchhHHHHHHHHh
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILGAV  561 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~alGAA~lA~~  561 (621)
                      ++|++   +++++.++-.+....   .+. ..+++|+++||.++|+.+++.+++.+|+++.++.. .+.+|+|||++|..
T Consensus       182 ~~di~---a~~~~~v~~~l~~~~---~~~-~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~  254 (276)
T 4ehu_A          182 IEDIV---AGIHTSVAKRVSSLV---KRI-GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFD  254 (276)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHH---HHH-CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHHHHH---Hhc-ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHH
Confidence            45655   488888775544332   222 24578999999999999999999999999999874 56789999999864

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=97.20  E-value=0.0031  Score=65.55  Aligned_cols=75  Identities=21%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecC-CCCCHHHHHHHHHhhC------CceeeccCC-Cc
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG-LAKNPLFLQQHADIIG------CPIILPREN-ES  550 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l-~~~g~~~~~I~~~GG-ga~s~~w~Qi~Advlg------~pV~~~~~~-e~  550 (621)
                      ...++|+++   +++.+|+..+..+.-.. ++.+  +++|+++|| .++|+..+++++..++      +++..++.+ -.
T Consensus       275 ~~~~eDIa~---gll~sVa~~I~~lA~l~A~~~~--i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~  349 (360)
T 2i7n_A          275 SISKEDLAR---ATLVTITNNIGSIARMCALNEN--IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF  349 (360)
T ss_dssp             TCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHT--CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCH
T ss_pred             CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHcC--CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHH
Confidence            446888765   99999999877764322 2234  347999999 9999999999999985      688877654 48


Q ss_pred             hhHHHHHHH
Q 007010          551 VLLGAAILG  559 (621)
Q Consensus       551 ~alGAA~lA  559 (621)
                      +|+|||+.+
T Consensus       350 GAlGAaL~~  358 (360)
T 2i7n_A          350 GAVGALLEL  358 (360)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            899999875

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.08  E-value=0.0008  Score=67.65  Aligned_cols=64  Identities=13%  Similarity=0.246  Sum_probs=47.6

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (621)
                      |+||||+|||++|++++|++++++.....+.      |..   ++    ...+.+++++++++....++..+++++.
T Consensus         2 ~~lGID~GsT~tk~av~d~~~~il~~~~~~~------g~~---~e----~a~~vl~~~~~~a~~~~~~~~~~a~t~~   65 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKNGEDIVASETISS------GTG---TT----GPSRVLEKLYGKTGLAREDIKKVVVTGY   65 (276)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEEESC------CTT---SS----HHHHHHHHHHHHHCCCGGGEEEEEEEST
T ss_pred             eEEEEEcCccEEEEEEEECCCeEEEEEEecC------CCC---HH----HHHHHHHHHHHHCCCcchhccccccCch
Confidence            7999999999999999999999987654433      111   11    1234577777777777788999998765

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=97.03  E-value=0.00078  Score=75.71  Aligned_cols=85  Identities=20%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      ++.++..+++.+++.+.-.+++.++...-....++.|+++||++++|.+.+++.+.||.++.... ..++.|+|||+.|+
T Consensus       301 tr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~  380 (605)
T 4b9q_A          301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             EHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHH
Confidence            57777777888888887777776664321123578999999999999999999999999987654 56788999999998


Q ss_pred             hhcccc
Q 007010          561 VAAKRY  566 (621)
Q Consensus       561 ~a~G~~  566 (621)
                      .-.|..
T Consensus       381 ~l~~~~  386 (605)
T 4b9q_A          381 VLTGDV  386 (605)
T ss_dssp             HHHTSS
T ss_pred             HhcCCC
Confidence            766643

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=96.98  E-value=0.001  Score=67.61  Aligned_cols=65  Identities=22%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      ++||||+|+|++|++++| +|+++.+.+.+...     ....+++++++.+.++++++..   .+..+|.+|+|
T Consensus         1 ~~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~~-----~~~~~~~~~~~~i~~~i~~~~~---~~~~~i~~igi   65 (291)
T 1zbs_A            1 MILIGDSGSTKTDWCIAK-EGKSLGRFQTSGIN-----PFQQDRNEIDTALRSEVLPAIG---QKASSIRAVYF   65 (291)
T ss_dssp             CEEEEEECSSEEEEEEEE-TTEEEEEEEEECCC-----TTTSCHHHHHHHHTTTTHHHHT---TSTTTCCEEEE
T ss_pred             CEEEEEeCccceEEEEEe-CCeEEEEEECCCCC-----cccCCHHHHHHHHHHHHHHHhC---CCcccccEEEE
Confidence            479999999999999999 99999887664310     1134788888888888876542   23456777777

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=96.98  E-value=0.0016  Score=65.71  Aligned_cols=53  Identities=21%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHH
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS  115 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~  115 (621)
                      |+||||+|.|++|++++|.+|+++.+.+.+++       ...+++++++.+.+.++++++
T Consensus         2 ~~lgidiggt~~~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~   54 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP-------ASQTPEALRDALSALVSPLQA   54 (289)
T ss_dssp             CEEEEEECSSEEEEEEECTTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHTTTGG
T ss_pred             eEEEEEeCCCEEEEEEECCCCCEEEEEEecCC-------CCCCHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999988877764       123588888888888876654

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=96.97  E-value=0.002  Score=66.38  Aligned_cols=76  Identities=21%  Similarity=0.367  Sum_probs=56.1

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .++||||+|.|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.++++..+.+    .+.+|||+. .+
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~----~i~~igi~~-pG   90 (327)
T 2ap1_A           24 AMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTP--------HTSYSAFLDAVCELVEEADQRFG----VKGSVGIGI-PG   90 (327)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC--------CSCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE-SS
T ss_pred             ceEEEEEECCCEEEEEEEeCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhcC----CccEEEEEe-ee
Confidence            589999999999999999999999988777664        12678888999999988876532    366666622 33


Q ss_pred             eEEecCC-CCce
Q 007010          135 LVAVDAD-GSPV  145 (621)
Q Consensus       135 ~v~vD~~-G~pl  145 (621)
                        ++|.+ |..+
T Consensus        91 --~vd~~~g~v~  100 (327)
T 2ap1_A           91 --MPETEDGTLY  100 (327)
T ss_dssp             --BSCCTTSCCB
T ss_pred             --eEECCCCEEE
Confidence              34554 5444

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=96.91  E-value=0.0015  Score=69.47  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-CCceeecc-CCCchhHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR-ENESVLLGAAILG  559 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~alGAA~lA  559 (621)
                      ++.++..+++.+++.+.-.+++.++........++.|+++||++++|.+.+++.+.| +.+|.... ..++.|+|||+.|
T Consensus       319 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a  398 (404)
T 3i33_A          319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  398 (404)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHH
Confidence            566777667777777776666666654222236789999999999999999999999 88887764 5678899999999


Q ss_pred             Hhhcc
Q 007010          560 AVAAK  564 (621)
Q Consensus       560 ~~a~G  564 (621)
                      +.-.|
T Consensus       399 ~~l~~  403 (404)
T 3i33_A          399 AILIG  403 (404)
T ss_dssp             HHHC-
T ss_pred             HHhcC
Confidence            86443

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=96.90  E-value=0.0023  Score=69.13  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCE---EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC--EEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE--VKGVG  128 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~v---v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~--I~aIg  128 (621)
                      ...+||||+|+|++|++++|.+|++   +...+.++|..    ...-+++++++.+.+++++.+++.+....+  +.||+
T Consensus        60 ~G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip~~----~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~lGi~  135 (457)
T 2yhx_A           60 AGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAM----STTAIPSDLWGNXAXSNAAFSSXEFSSXAGSVPLGFT  135 (457)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTT----TSCSCTHHHHHHHHHHHHHHHHHHTSSCSSCEEEEEE
T ss_pred             cceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcCCc----cCCCCHHHHHHHHHHHHHHHHhhcccccccccceeeE
Confidence            3578999999999999999999988   44444444311    012267999999999999998764322222  44555


Q ss_pred             Ec
Q 007010          129 FA  130 (621)
Q Consensus       129 is  130 (621)
                      ++
T Consensus       136 fs  137 (457)
T 2yhx_A          136 FX  137 (457)
T ss_dssp             CC
T ss_pred             EE
Confidence            53

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=96.90  E-value=0.0015  Score=69.62  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceee---------ccCCCchh
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL---------PRENESVL  552 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~---------~~~~e~~a  552 (621)
                      ++.++..+++.+++.+.-.+++.++........++.|+++||++++|.+.+++.+.|+.++.+         .+..++.|
T Consensus       312 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava  391 (409)
T 4gni_A          312 NRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQA  391 (409)
T ss_dssp             EHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHH
Confidence            567777677777777766666555543211235789999999999999999999999988533         34678899


Q ss_pred             HHHHHHHHhh
Q 007010          553 LGAAILGAVA  562 (621)
Q Consensus       553 lGAA~lA~~a  562 (621)
                      +|||+.|+.-
T Consensus       392 ~GAa~~~~~~  401 (409)
T 4gni_A          392 RGAALQASLI  401 (409)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9999998753

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=96.88  E-value=0.00054  Score=71.97  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=53.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEE-EeeeccccCCCccccCHHHHHHHHHH---HHHHHHHHcCCCCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWKEGDCIEQSSTDIWHAICA---AVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~-~~~~~~~~~~g~~eqd~~~~~~~~~~---~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      .|+||||+|.|++|++++| +|+++.+. +.+++       .. +++++++.+.+   .++++++      .+|.+|||+
T Consensus         9 ~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~-------~~-~~~~~l~~i~~~~~~i~~~~~------~~i~gIGIa   73 (366)
T 3mcp_A            9 RIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPAC-------AD-CLDKCLGNLVEGFKAIQAGLP------EAPVAISFA   73 (366)
T ss_dssp             CEEEEEECSSSEEEEEEEE-TTEECSCCEEEECC-------TT-CHHHHHHHHHHHHHHHHTTCS------SCCCEEEEE
T ss_pred             CEEEEEEECcceEEEEEEE-CCEEEEEEEEEECC-------CC-CHHHHHHHHHHHHHHHHHHhh------cCCeEEEEE
Confidence            6899999999999999999 99998876 66654       12 88888888887   4444321      578899984


Q ss_pred             CCCceEEecCC-CCce
Q 007010          131 ATCSLVAVDAD-GSPV  145 (621)
Q Consensus       131 ~~~~~v~vD~~-G~pl  145 (621)
                      . .|  ++|.+ |..+
T Consensus        74 v-PG--~Vd~~~G~i~   86 (366)
T 3mcp_A           74 F-PG--PADYQAGIIG   86 (366)
T ss_dssp             C-CS--SEETTTTEEC
T ss_pred             e-cc--eEeCCCCEEE
Confidence            3 34  35654 6655

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=96.83  E-value=0.009  Score=60.30  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CCCCHHHHHHHHHh---hCCceeeccCCC-chhHH
Q 007010          480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADI---IGCPIILPRENE-SVLLG  554 (621)
Q Consensus       480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG-ga~s~~w~Qi~Adv---lg~pV~~~~~~e-~~alG  554 (621)
                      ...++|+++   +++.+|+..+..+.....+ ..++++|+++|| .+.|+.+++.+.+.   ++.++.+++.++ .+|+|
T Consensus       206 g~~~eDIaa---sl~~sV~~~I~~la~~~a~-~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG  281 (287)
T 2ews_A          206 DFTPSNKLA---AVIGVVGEVVTTMAITVAR-EFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG  281 (287)
T ss_dssp             CCCHHHHHH---HHHHHHHHHHHHHHHHHHH-HTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred             CCCHHHHHH---HHHHHHHHHHHHHHHHHHH-hCCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence            457889765   9999998777665443222 134558999999 89999999999998   589999887554 67999


Q ss_pred             HHHHH
Q 007010          555 AAILG  559 (621)
Q Consensus       555 AA~lA  559 (621)
                      ||+.|
T Consensus       282 AaL~~  286 (287)
T 2ews_A          282 ALYLE  286 (287)
T ss_dssp             HHHTC
T ss_pred             HHHhC
Confidence            99864

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=96.65  E-value=0.0023  Score=67.36  Aligned_cols=80  Identities=21%  Similarity=0.276  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      +++++..+++..++.+.-.+++.++...-....++.|+++||+++.|.+.+.+.+.|+.+|.... ..++.|+|||+.|+
T Consensus       301 t~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~  380 (383)
T 1dkg_D          301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (383)
T ss_dssp             EHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTT
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHH
Confidence            56676666667777665544444433211123578999999999999999999999999987655 56788999999875


Q ss_pred             h
Q 007010          561 V  561 (621)
Q Consensus       561 ~  561 (621)
                      .
T Consensus       381 ~  381 (383)
T 1dkg_D          381 V  381 (383)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=96.56  E-value=0.0035  Score=62.65  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=45.2

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      ++|+||+|.|++|.++||. ++++...+.+++        ....+++.    ..++.+++..+.+..+|.+|+|
T Consensus         3 MlL~IDIGNT~iK~gl~d~-~~l~~~~r~~T~--------~~t~de~~----~~l~~ll~~~~~~~~~I~~iiI   63 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDG-DEIKLRFRHTSK--------VSTSDELG----IFLKSVLRENNCSPETIRKIAI   63 (266)
T ss_dssp             CEEEEEECSSEEEEEEEET-TEEEEEEEEECS--------CCCHHHHH----HHHHHHHHTTTCCGGGCCEEEE
T ss_pred             eEEEEEECCCeEEEEEEEC-CEEEEEEEecCC--------CCCHHHHH----HHHHHHHHHcCCChhhceEEEE
Confidence            5899999999999999995 688877777664        24456654    3455666665556677999988

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=96.46  E-value=0.00064  Score=69.07  Aligned_cols=63  Identities=16%  Similarity=0.102  Sum_probs=32.9

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      |+||||+|+|++|++++| +|+++.+.+.+....     ...+++++++.+.+++++++.     ..+|.+|+|
T Consensus         1 ~~lgiDiGGT~i~~~l~d-~g~il~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~-----~~~i~~igi   63 (291)
T 1zxo_A            1 MILIADSGSTKTDWCVVL-NGAVIKRLGTKGINP-----FFQSEEEIQQKLTASLLPQLP-----EGKFNAVYF   63 (291)
T ss_dssp             ---CEECCTTCEEEEEEC-SSSEEEEEEECCCCT-----TTSCSTTTTTTTTC------------------CEE
T ss_pred             CEEEEEeccccEEEEEEc-CCeEEEEEECCCCCc-----ccCCHHHHHHHHHHHHHHhcC-----cccccEEEE
Confidence            479999999999999999 999998876543211     112344455555555555432     235666776

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=96.31  E-value=0.0018  Score=63.32  Aligned_cols=65  Identities=9%  Similarity=0.056  Sum_probs=41.1

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .++||||+|+|++|  ++|.+|++  ..+.+++       ...+++++.+.+.+.+    ++     .++.+|||+. .+
T Consensus         6 ~~~lgiDIGGT~i~--~~d~~g~~--~~~~~t~-------~~~~~~~~~~~i~~~i----~~-----~~i~gigi~~-pG   64 (226)
T 3lm2_A            6 QTVLAIDIGGSHVK--IGLSTDGE--ERKVESG-------KTMTGPEMVAAVTAMA----KD-----MTYDVIAMGY-PG   64 (226)
T ss_dssp             CCEEEEEECSSEEE--EEETTTCC--EEEEECC-------TTCCHHHHHHHHHHHT----TT-----CCCSEEEEEE-SS
T ss_pred             CEEEEEEECCCEEE--EEECCCCE--EEEEECC-------CCCCHHHHHHHHHHHH----Hh-----CCCCEEEEEE-Ee
Confidence            58999999999999  57888886  2344443       2356777766655544    32     1567777732 34


Q ss_pred             eEEecCCC
Q 007010          135 LVAVDADG  142 (621)
Q Consensus       135 ~v~vD~~G  142 (621)
                        ++|.++
T Consensus        65 --~Vd~~~   70 (226)
T 3lm2_A           65 --PVVHNK   70 (226)
T ss_dssp             --CEETTE
T ss_pred             --EEECCe
Confidence              346544

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=96.27  E-value=0.0023  Score=67.58  Aligned_cols=68  Identities=7%  Similarity=0.063  Sum_probs=44.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHH---HHHHHHHHHHcCCCCCCEEEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAI---CAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~---~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +++||||+|+|++|++++|.+ +++.+.+.+++....     .+++++.+.+   .+.+.+++++.+....+|.+| +
T Consensus         2 ~~vlgidiGgt~ik~al~d~~-~il~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i   72 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDEL-----GRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-V   72 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHH-----HTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-E
T ss_pred             CeEEEEECCccceeEEEEecc-hheeeeecccCcccc-----cchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-E
Confidence            589999999999999999976 888887777642100     0112223333   666667766555444567777 5

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=96.26  E-value=0.0056  Score=61.89  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=48.6

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++||||+|.|++|++++|.+|+++.+.+.+++         .+++++.+.+.+.+++         .+|.+|||+. .+ 
T Consensus         5 ~~lgidiggt~i~~~l~d~~g~il~~~~~~~~---------~~~~~~~~~i~~~i~~---------~~i~gigi~~-pG-   64 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTPDGKILDKTSISTP---------ENLEDLLAWLDQRLSE---------QDYSGIAMSV-PG-   64 (292)
T ss_dssp             CEEEEEEETTEEEEEEECTTCCEEEEEEECCC---------SSHHHHHHHHHHHHTT---------SCCSEEEEEE-SS-
T ss_pred             EEEEEEECCCEEEEEEECCCCCEEEEEEEeCC---------CCHHHHHHHHHHHHHh---------CCCcEEEEEe-cC-
Confidence            58999999999999999999999987766542         3567776665555533         3577777732 44 


Q ss_pred             EEecCC-CCce
Q 007010          136 VAVDAD-GSPV  145 (621)
Q Consensus       136 v~vD~~-G~pl  145 (621)
                       ++|.+ |..+
T Consensus        65 -~vd~~~g~v~   74 (292)
T 2gup_A           65 -AVNQETGVID   74 (292)
T ss_dssp             -EECTTTCBEE
T ss_pred             -cccCCCCEEE
Confidence             45654 5444

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=96.25  E-value=0.013  Score=63.25  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             CeEEEEecCccceeeEEEcCCC-CE---EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDESG-KL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g-~v---v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      ..+||||+|+|++|+++++.+| +-   +...+.++|..    ....+.+++++.+.+++.+.+++.+..... ..||++
T Consensus        68 G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~~----~~~~~~~~lfd~Ia~~i~~~l~~~~~~~~~-~~lG~t  142 (451)
T 1bdg_A           68 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAE----KMSGSGTELFKYIAETLADFLENNGMKDKK-FDLGFT  142 (451)
T ss_dssp             EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTT----TTTSBHHHHHHHHHHHHHHHHHHTTCCSSC-EEEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCCc----ccCCCHHHHHHHHHHHHHHHHHhcCCCccc-cceEEE
Confidence            4789999999999999999888 51   11223333311    123467999999999999999876543333 556663

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=96.17  E-value=0.0031  Score=66.36  Aligned_cols=76  Identities=21%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             CCeEEEEecCccceeeEEEcC----CCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDE----SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~----~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +.|+||||+|+|++|++++|.    +|+++...+. ++.        .+++++.+.+.+.++++....   +.+|.+|||
T Consensus        28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~~--------~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi   95 (373)
T 2q2r_A           28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MKR--------KDITEIIEFFNEIIELMPASV---MKRVKAGVI   95 (373)
T ss_dssp             SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CTT--------CBGGGHHHHHHHHHHHSCHHH---HTTEEEEEE
T ss_pred             CCeEEEEEEccccEEEEEEecccCCCccEEEEeee-cCC--------CCHHHHHHHHHHHHHHHhhcc---cccccEEEE
Confidence            569999999999999999998    8988876541 220        356777777777776654321   246888877


Q ss_pred             cCCCceEEecCCCCce
Q 007010          130 AATCSLVAVDADGSPV  145 (621)
Q Consensus       130 s~~~~~v~vD~~G~pl  145 (621)
                      +. .|  ++|. |...
T Consensus        96 ~~-pG--~vd~-g~v~  107 (373)
T 2q2r_A           96 NV-PG--PVTG-GAVG  107 (373)
T ss_dssp             EE-SS--CEET-TTEE
T ss_pred             Ee-ec--cccC-CEEe
Confidence            32 33  3455 5544

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=96.12  E-value=0.0071  Score=66.39  Aligned_cols=83  Identities=22%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      +++++..++...++.+.-.+++.++...-....++.|+++||+++.|.+.+.+.+.|+.++.... ..++.|+|||+.|+
T Consensus       270 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          270 TRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGG  349 (509)
T ss_dssp             EHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHH
Confidence            56676666667777666555555554321113578999999999999999999999998876544 56788999999998


Q ss_pred             hhcc
Q 007010          561 VAAK  564 (621)
Q Consensus       561 ~a~G  564 (621)
                      .-.|
T Consensus       350 ~l~~  353 (509)
T 2v7y_A          350 VIAG  353 (509)
T ss_dssp             HHHT
T ss_pred             HhcC
Confidence            6544

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=96.06  E-value=0.01  Score=69.62  Aligned_cols=73  Identities=12%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             CeEEEEecCccceeeEEEcCCCC----E-EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK----L-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVG  128 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~----v-v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~-I~aIg  128 (621)
                      ..+||||+|+|++|++++|.+|+    + +...+.++|..    ..+.+.+++++.+.+++.+++++.+...+. ..||+
T Consensus        78 G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~~----~~~~~~~~lf~~Ia~~i~~~l~~~~~~~~~~~lGi~  153 (917)
T 1cza_N           78 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPEN----IVHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVGFT  153 (917)
T ss_dssp             EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCHH----HHSSBHHHHHHHHHHHHHHHHHHHTCTTSCCCEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCcc----cccCCHHHHHHHHHHHHHHHHHhcCCCCCcccEEEE
Confidence            47899999999999999998876    4 45555555421    012367899999999999998765432222 46777


Q ss_pred             EcC
Q 007010          129 FAA  131 (621)
Q Consensus       129 is~  131 (621)
                      ++.
T Consensus       154 fs~  156 (917)
T 1cza_N          154 FSF  156 (917)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            754

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=95.92  E-value=0.0083  Score=68.09  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      ++.++..++..+++.+.-.++..++...-....++.|+++||+++.|.+.+++.+.||.++.... ..++.|+|||+.|+
T Consensus       302 tr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~  381 (675)
T 3d2f_A          302 SREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICA  381 (675)
T ss_dssp             EHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHH
Confidence            56777666666776666555555554321112578999999999999999999999999886644 67888999999998


Q ss_pred             hhccc
Q 007010          561 VAAKR  565 (621)
Q Consensus       561 ~a~G~  565 (621)
                      .-.|.
T Consensus       382 ~ls~~  386 (675)
T 3d2f_A          382 IHSPT  386 (675)
T ss_dssp             HTCSS
T ss_pred             HhCCC
Confidence            75553

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=95.87  E-value=0.0085  Score=61.87  Aligned_cols=34  Identities=32%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             CCCeEEEEecCccceeeEEEc-CCCCEEEEEEeee
Q 007010           53 SRSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPI   86 (621)
Q Consensus        53 ~~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~   86 (621)
                      +|.|+||||+|.|++|++++| .+|+++...+.++
T Consensus        12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~   46 (332)
T 1sz2_A           12 STKYALVGDVGGTNARLALCDIASGEISQAKTYSG   46 (332)
T ss_dssp             --CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG
T ss_pred             CCCEEEEEEechhheEEEEEECCCCcEEEEEEecC
Confidence            357999999999999999999 5899887655544

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=95.49  E-value=0.027  Score=62.60  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             CeEEEEecCccceeeEEEc-CCCCEEEEEEeeecccc-CCC------cccc---CHHHH----HHHHHHHHHHHHHHcCC
Q 007010           55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIEQ---SSTDI----WHAICAAVDSACSLANV  119 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~-~~g------~~eq---d~~~~----~~~~~~~l~~~~~~~~~  119 (621)
                      .|-|+||||||.+.+.++| .+|+++++.+.-.+... ..+      ++.+   ..+++    .+.+.+.+.+++++.++
T Consensus       206 ~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~i  285 (631)
T 3zyy_X          206 VFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHGV  285 (631)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5889999999999999999 68999999888766432 111      2211   12333    44444555555566689


Q ss_pred             CCCCEEEEEEcC
Q 007010          120 DGEEVKGVGFAA  131 (621)
Q Consensus       120 ~~~~I~aIgis~  131 (621)
                      ++++|..|.|++
T Consensus       286 ~~~~I~~~~v~G  297 (631)
T 3zyy_X          286 EKKEIMAAVVAG  297 (631)
T ss_dssp             CGGGEEEEEEEE
T ss_pred             CHHHeeEEEEEc
Confidence            999999999976

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=95.45  E-value=0.019  Score=56.83  Aligned_cols=59  Identities=20%  Similarity=0.365  Sum_probs=42.5

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      .+|+||+|.|++|.++|| +++++...+.+++       ..+..+++...+.+.++.       ...+|.+|.|
T Consensus         4 M~L~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~l~~l~~~-------~~~~i~~i~I   62 (249)
T 3bex_A            4 MYLLVDVGNTHSVFSITE-DGKTFRRWRLSTG-------VFQTEDELFSHLHPLLGD-------AMREIKGIGV   62 (249)
T ss_dssp             EEEEEEECSSEEEEEEES-SSSSCEEEEEECC-------TTCCHHHHHHHHHHHHGG-------GGGGEEEEEE
T ss_pred             eEEEEEECCCeEEEEEEE-CCEEEEEEEecCC-------CCCCHHHHHHHHHHHHhh-------ccccCCEEEE
Confidence            579999999999999998 5677777666664       235567777665555433       2356888888

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=95.41  E-value=0.018  Score=63.76  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-Cceeec-cCCCchhHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILP-RENESVLLGAAILG  559 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~~-~~~e~~alGAA~lA  559 (621)
                      ++.++..+...+++.+.-.+++.++...-....++.|+++||+++.|.+.+++.+.|+ .++... +..++.|+|||+.|
T Consensus       298 tr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a  377 (554)
T 1yuw_A          298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  377 (554)
T ss_dssp             EHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHH
Confidence            4556555555566655544444444321011357899999999999999999999996 777654 46678899999999


Q ss_pred             Hhhcc
Q 007010          560 AVAAK  564 (621)
Q Consensus       560 ~~a~G  564 (621)
                      +.-.|
T Consensus       378 ~~l~~  382 (554)
T 1yuw_A          378 AILSG  382 (554)
T ss_dssp             HHTTS
T ss_pred             HHhcC
Confidence            86555

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=95.25  E-value=0.044  Score=59.31  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=46.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCCE-EEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDG-EEVKGVGF  129 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~v-v~~~~~~~~~~~~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~-~~I~aIgi  129 (621)
                      ..+|+||+|+|++|+++++.+|+- ....+..+++   |... .-+.+++++.+.+++.+.+++..... .+...+|+
T Consensus        80 G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~I---p~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~l~lGf  154 (485)
T 3o8m_A           80 GDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRL---PDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGF  154 (485)
T ss_dssp             EEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEEC---CTTGGGSBHHHHHHHHHHHHHHHHHHHCTTCCSSCEEEEE
T ss_pred             eEEEEEEecCCeEEEEEEEECCCCceEEEEEEEec---CchhccCCHHHHHHHHHHHHHHHHHHhcccccccccceEE
Confidence            479999999999999999977651 1111222221   1112 22478999999999999998754321 34445665

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=95.00  E-value=0.019  Score=59.30  Aligned_cols=76  Identities=16%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C-c-CEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH----K-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLG  554 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~----~-~-~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alG  554 (621)
                      +++++..+++..++.+.-.+++.++   +.+.    . + +.|+++||+++.|.+.+.+.+.|+.||.+.. ..+++++|
T Consensus       242 ~~~~~~~~~~~~~~~i~~~i~~~l~---~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~G  318 (344)
T 1jce_A          242 KGGEVREALRSVVVAIVESVRTTLE---KTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKG  318 (344)
T ss_dssp             EHHHHHHHTHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHH
Confidence            4566666666666666655554444   3221    1 2 5799999999999999999999999998875 56788999


Q ss_pred             HHHHHH
Q 007010          555 AAILGA  560 (621)
Q Consensus       555 AA~lA~  560 (621)
                      ||++|.
T Consensus       319 aa~~a~  324 (344)
T 1jce_A          319 AGMVLD  324 (344)
T ss_dssp             HHHGGG
T ss_pred             HHHHHh
Confidence            998875

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=94.91  E-value=0.0071  Score=67.83  Aligned_cols=83  Identities=20%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      ++.++..++..+++.+.-.+++.++...-....++.|+++||+++.|.+.+++.+.||.++.... ..++.|+|||+.|+
T Consensus       301 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~  380 (605)
T 2kho_A          301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             EHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHT
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHH
Confidence            45555443334444443333333332211123678999999999999999999999998876544 56788999999997


Q ss_pred             hhcc
Q 007010          561 VAAK  564 (621)
Q Consensus       561 ~a~G  564 (621)
                      .-.|
T Consensus       381 ~l~~  384 (605)
T 2kho_A          381 VLTG  384 (605)
T ss_dssp             TTTT
T ss_pred             HhcC
Confidence            6544

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=94.83  E-value=0.051  Score=54.27  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +|.||+|.|++|.++|| +++++...+.+++       .....+++...    ++++++..+.+..+|.+|.+
T Consensus         2 lL~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~----l~~ll~~~~~~~~~i~~iiI   62 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFE-EGELRQHWRMETD-------RHKTEDEYGML----VKQLLEHEGLSFEDVKGIIV   62 (268)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEECC-------TTCCHHHHHHH----HHHHHHHTTCCGGGCCEEEE
T ss_pred             EEEEEECcCcEEEEEEE-CCEEEEEEEecCC-------CcCCHHHHHHH----HHHHHHHcCCCcccCcEEEE
Confidence            68999999999999998 5677777666654       23456666654    44555555555567888888

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=94.66  E-value=0.068  Score=62.71  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=50.7

Q ss_pred             CCeEEEEecCccceeeEEEcCC-CC--EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDES-GK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~-g~--vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      ...+||||+|+|++|+++++.+ |+  ++...+..+.+-..  ...-+.+++|+.+.+++.+.++..+...+.+ .||++
T Consensus       525 ~G~~lalDlGGTn~Rv~~V~l~~g~~~~~~~~~~~~~ip~~--~~~~~~~~lfd~Ia~~i~~~l~~~~~~~~~l-~lG~t  601 (917)
T 1cza_N          525 NGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIE--IMQGTGEELFDHIVSCISDFLDYMGIKGPRM-PLGFT  601 (917)
T ss_dssp             CEEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCHH--HHTSBHHHHHHHHHHHHHHHHHHHTCCSSCC-EEEEE
T ss_pred             ceEEEEEEECCCcEEEEEEEeCCCcceeEEeeeeEEecCcc--cccCCHHHHHHHHHHHHHHHHHHcCCCccce-eEEEE
Confidence            3578999999999999999975 64  66544444331110  0123568999999999999998755444444 56664

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=93.69  E-value=0.14  Score=53.46  Aligned_cols=64  Identities=11%  Similarity=0.006  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      ++++.++.+..++.++-.+++.++.+.. . ...++.|+++||+++.+.+.+++++.|+.||.+..
T Consensus       273 ~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~  338 (377)
T 2ych_A          273 PGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN  338 (377)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence            3445556678889898888888886532 2 34789999999999999999999999999998863

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=93.67  E-value=0.055  Score=57.74  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNA------HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  546 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~------~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~  546 (621)
                      ++.++.++.++.+|-+.-.+++.++...-      ....++.|+++||+|+-|.+.+++++.||+||++..
T Consensus       290 s~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~  360 (419)
T 4a2a_A          290 TAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC  360 (419)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence            46777878889999998888888876642      123567899999999999999999999999998754

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=93.37  E-value=0.21  Score=51.38  Aligned_cols=82  Identities=17%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc----CCCchhHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG  554 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~alG  554 (621)
                      .+++++.   ++.+.++-.+.+.++.+.+. ...++|.++||.+.|..+++.+.+.+   |.+|.+++    ...+.++|
T Consensus       216 ~~~diAa---~fq~~l~~~l~~~~~~~~~~-~~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG  291 (330)
T 2ivn_A          216 RVEDLAY---SFQETAFAALVEVTERAVAH-TEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIA  291 (330)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHH
Confidence            3566654   77777776666665554331 23578999999999999999999887   78887765    34566889


Q ss_pred             HHHHHHhhccccC
Q 007010          555 AAILGAVAAKRYS  567 (621)
Q Consensus       555 AA~lA~~a~G~~~  567 (621)
                      +|....+..|...
T Consensus       292 ~a~~~~~~~~~~~  304 (330)
T 2ivn_A          292 YTGLRMYKAGISF  304 (330)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHhcCCCC
Confidence            8876655555443

>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*

Probab=93.37  E-value=0.25  Score=51.18  Aligned_cols=76  Identities=14%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-CceeeccCC----C-chhHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPREN----E-SVLLGA  555 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~~~~~----e-~~alGA  555 (621)
                      +++|..+   -+.|-.|-.+.+.++.+.   .++++|+++|||++|+.+++.++..+. .+|...+..    + --|+.-
T Consensus       257 s~~Dv~A---TLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aF  330 (371)
T 3qbx_A          257 PAADIQA---TLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAF  330 (371)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHH
Confidence            5677653   667766666666555442   356899999999999999999999984 777765431    1 225566


Q ss_pred             HHHHHhhc
Q 007010          556 AILGAVAA  563 (621)
Q Consensus       556 A~lA~~a~  563 (621)
                      |++|...+
T Consensus       331 A~LA~~~l  338 (371)
T 3qbx_A          331 AWLAHRFL  338 (371)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67766553

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=93.12  E-value=0.35  Score=51.46  Aligned_cols=76  Identities=7%  Similarity=0.059  Sum_probs=52.4

Q ss_pred             CeEEEEecCccceeeEEEcC--CC-CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFDE--SG-KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~--~g-~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      ++++||||||+++|+++...  +| ++++....|..-. ..| .-.|.+..-+++.++++++=+.++..-.+=..+++++
T Consensus         8 ~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv-~~G-~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g   85 (419)
T 4a2a_A            8 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGL-DEG-EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS   85 (419)
T ss_dssp             CEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSE-ETT-EESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECC
T ss_pred             CEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCe-eCC-EEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcC
Confidence            68999999999999999973  23 6777766653211 333 3458888888888888887655665444414577766


Q ss_pred             C
Q 007010          132 T  132 (621)
Q Consensus       132 ~  132 (621)
                      .
T Consensus        86 ~   86 (419)
T 4a2a_A           86 V   86 (419)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=92.66  E-value=0.28  Score=51.06  Aligned_cols=71  Identities=13%  Similarity=0.045  Sum_probs=43.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCC--EEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK--LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~--vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      +.++|||+||+++|++++. +|+  +......++|... ..|. -.|++.+.+++.+++++    .+....+ ..+++++
T Consensus        13 ~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~~~~g~-i~d~~~~~~~ik~~~~~----~~~~~~~-v~~~i~~   85 (377)
T 2ych_A           13 VEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGLLMEGM-VAEPAALAQEIKELLLE----ARTRKRY-VVTALSN   85 (377)
T ss_dssp             CCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTSEETTE-ESCHHHHHHHHHHHHHH----HTCCCCE-EEEEECG
T ss_pred             CceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCcccCCC-cCCHHHHHHHHHHHHHH----cCCCcce-EEEEecC
Confidence            4689999999999999996 555  5445555555322 3332 35787777666655554    4443333 3466654


Q ss_pred             C
Q 007010          132 T  132 (621)
Q Consensus       132 ~  132 (621)
                      .
T Consensus        86 ~   86 (377)
T 2ych_A           86 L   86 (377)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=92.45  E-value=0.42  Score=49.16  Aligned_cols=82  Identities=15%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc----CCCchhHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLGA  555 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~alGA  555 (621)
                      +.+++.   ++.+.++-.+.+.+....+. ..+++|.++||.+.|..+++.+.+.+   |.+|.+++    .+.+.++|.
T Consensus       222 ~~diAa---sfq~~l~~~l~~~~~~a~~~-~g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~  297 (334)
T 3eno_A          222 IEDISY---SIQETAFAMLVEVLERALYV-SGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQ  297 (334)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHH-HTCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHH
Confidence            456654   66777766666655544331 23578999999999999999999988   88888765    356778899


Q ss_pred             HHHHHhhccccCC
Q 007010          556 AILGAVAAKRYSS  568 (621)
Q Consensus       556 A~lA~~a~G~~~s  568 (621)
                      |....+-.|...+
T Consensus       298 a~~~~~~~g~~~~  310 (334)
T 3eno_A          298 AALLMYKSGVRMS  310 (334)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHHHHcCCCCC
Confidence            8777666666544

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}

Probab=91.64  E-value=0.45  Score=49.32  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=53.4

Q ss_pred             CCCCeEEEEecCcc--ceeeEEEcCCCC---EEEEEEeeeccc------c--CCCcccc-----CHHHHHHHHHHHHHHH
Q 007010           52 RSRSVFLGVDVGTG--SARAGLFDESGK---LLGSASSPIQIW------K--EGDCIEQ-----SSTDIWHAICAAVDSA  113 (621)
Q Consensus        52 m~~~~~lgIDiGTt--siKa~l~d~~g~---vv~~~~~~~~~~------~--~~g~~eq-----d~~~~~~~~~~~l~~~  113 (621)
                      |+..++||+=.|||  +|-+++++-+|+   ++.....||+..      .  .++..+.     =-.++=+...++++++
T Consensus         2 ~~~~~~iGlMSGTSlDGiD~alv~~~~~~~~~~~~~~~pyp~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~   81 (370)
T 3cqy_A            2 MNKAYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNL   81 (370)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecccchhhHeEEEEEEeCCeEEEEeeeeecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55568999999997  789999997654   777888888621      1  1111110     0112334455777788


Q ss_pred             HHHcCCCCCCEEEEEE
Q 007010          114 CSLANVDGEEVKGVGF  129 (621)
Q Consensus       114 ~~~~~~~~~~I~aIgi  129 (621)
                      +++.++++++|.+||.
T Consensus        82 l~~~~~~~~~i~~IGs   97 (370)
T 3cqy_A           82 LAKTKIAKDEIIAIGS   97 (370)
T ss_dssp             HHHHCCCGGGEEEEEE
T ss_pred             HHHcCCCcccccEEEe
Confidence            8888888899999999

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=91.62  E-value=0.57  Score=52.40  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-CCceeecc----CCCchhHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR----ENESVLLGA  555 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-g~pV~~~~----~~e~~alGA  555 (621)
                      ..+++++.   ++.++++-.+.+..+.+.+. ..+++|.++||.+.|..+++.+...+ |.+|..+.    ...+.++|-
T Consensus       570 ~~~~dIAa---sFh~ala~~L~~~~~ra~~~-~g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQ  645 (657)
T 3ttc_A          570 APVNQRAW---AFHDALAQGFAALMREQATM-RGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQ  645 (657)
T ss_dssp             CCHHHHHH---HHHHHHHHHHHHHHHHHHHT-TTCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHH
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHH
Confidence            35667654   88888887777776665442 34679999999999999999999998 88887643    456678999


Q ss_pred             HHHHHh
Q 007010          556 AILGAV  561 (621)
Q Consensus       556 A~lA~~  561 (621)
                      |++|+.
T Consensus       646 A~~a~~  651 (657)
T 3ttc_A          646 GVIAAA  651 (657)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998853

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=91.61  E-value=0.57  Score=48.04  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=50.3

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~e-qd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      ++||||.++..+++++++. |+++.....++. ....|... .....=.+.+..++++++++++++..+|.+|+++
T Consensus         2 ~iLgIdts~~~~~val~~~-g~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~   75 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSE-DKVLANVFDTLT-TEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFS   75 (330)
T ss_dssp             CEEEEECSSSEEEEEEECS-SCEEEEEEEECC-CTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE
T ss_pred             EEEEEEccCCCeEEEEEEC-CEEEEEEEEEee-cccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEE
Confidence            5899999999999999974 588866555432 11223221 1122234456678888888888888999999884

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=91.23  E-value=0.48  Score=54.07  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc----CCCchhHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG  554 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~alG  554 (621)
                      .+++++.   ++.++++-.+.+....+.+. ..++.|.++||.+.|..+++.+...+   |.+|..+.    ...+.++|
T Consensus       665 ~~~dIAa---sFq~ala~~L~~~~~~a~~~-~g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialG  740 (761)
T 3vth_A          665 EKSYISA---KFHNTVVNFTYDLANLIRKE-TGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLG  740 (761)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-HCCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHH
Confidence            3455543   66677766666655544331 23578999999999999999999887   78887755    44566899


Q ss_pred             HHHHHHhh
Q 007010          555 AAILGAVA  562 (621)
Q Consensus       555 AA~lA~~a  562 (621)
                      .|++|...
T Consensus       741 QA~~a~~~  748 (761)
T 3vth_A          741 QAVIANKI  748 (761)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988643

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=91.04  E-value=0.37  Score=49.58  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=54.5

Q ss_pred             CCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQ-SSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        52 m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eq-d~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      |.+.++||||-.+..+-++|++ +++++......+.. ...|.... ....=.+.+..++++++++++++..+|.+|+++
T Consensus         3 ~~~M~iLgIdts~~~~svAl~~-~~~i~~~~~~~~~~-~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~   80 (334)
T 3eno_A            3 MDPMIVLGLEGTAHTISCGIID-ESRILAMESSMYRP-KTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS   80 (334)
T ss_dssp             CCCCEEEEEECSSSEEEEEEEE-SSCCCEEEEEECCC-SSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             ccCceEEEEECCCcCeEEEEEE-CCEEEEEEEEeecc-ccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            4345799999999999999998 55787765443321 12233211 112233456778888888888889999999996


Q ss_pred             CCCc
Q 007010          131 ATCS  134 (621)
Q Consensus       131 ~~~~  134 (621)
                      ..++
T Consensus        81 ~gPG   84 (334)
T 3eno_A           81 MGPG   84 (334)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            5443

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=90.33  E-value=0.44  Score=48.49  Aligned_cols=69  Identities=10%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCC---ceeecc-CCCchhHHHHHHH
Q 007010          485 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPR-ENESVLLGAAILG  559 (621)
Q Consensus       485 ~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~---pV~~~~-~~e~~alGAA~lA  559 (621)
                      .+...+++.++.++-.   +.+.+++. ..++.|+++||+|+  ++.+.+.+.++.   ++.++. ..++.|+|+++++
T Consensus       247 ~~~~~i~~~~~~~~~~---i~~~i~~~-~~~~~vvl~GGga~--ll~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~  319 (320)
T 2zgy_A          247 IVTEAMNEALRKLEQR---VLNTLNEF-SGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG  319 (320)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHTTC-CCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHhh-cCCCeEEEECChHH--HHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence            3333444555555433   33334433 35789999999987  488999999998   576655 4668899999865

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=90.31  E-value=0.52  Score=53.93  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc----CCCchhHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG  554 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~alG  554 (621)
                      .+.+++.   ++.+.++-.+.+.+..+.+. ..+++|.++||.+.|..+++.+.+.+   |..|.++.    ...+.|+|
T Consensus       677 ~~~dIAa---sfQ~al~~~L~~~~~~a~~~-tg~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALG  752 (772)
T 4g9i_A          677 SPADIAY---SAHLALARAFAHTAVERARE-FGVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVG  752 (772)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHT-TTCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHH
Confidence            4556554   56666655555555544432 34678999999999999999998875   56776643    45567999


Q ss_pred             HHHHHHhhcccc
Q 007010          555 AAILGAVAAKRY  566 (621)
Q Consensus       555 AA~lA~~a~G~~  566 (621)
                      .|++|+..+.-|
T Consensus       753 QA~iA~~~L~~~  764 (772)
T 4g9i_A          753 QAFLGGLYLEGY  764 (772)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcc
Confidence            999998876544

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=89.68  E-value=0.86  Score=48.53  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=41.9

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeee--ccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI--QIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~--~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~  118 (621)
                      ..||+||+|+|+.|+++++..|. +...+..+  |.....    -..+++|+.+.++|.+.+++.+
T Consensus        59 G~~LAlDlGGTn~RV~~V~l~g~-~~~~~~~~~ip~~~~~----g~~~~LFd~Ia~~i~~fl~~~~  119 (445)
T 3hm8_A           59 GDFLALDLGGTNFRVLLVRVTTG-VQITSEIYSIPETVAQ----GSGQQLFDHIVDCIVDFQQKQG  119 (445)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSS-EEEEEEEECCCHHHHT----SBHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEecCCeEEEEEEEECCc-eEEEEEEeccCccccC----CCHHHHHHHHHHHHHHHHHHhC
Confidence            47899999999999999997766 33223223  211111    1468899999999999887644

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=89.10  E-value=0.33  Score=49.48  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeecc
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQI   88 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~   88 (621)
                      +||+|||+-++|+++++.+|++ ...+.+.|+
T Consensus         2 iiG~DIGGAn~K~a~~~~~g~~-~~~~~~~Pl   32 (334)
T 3cet_A            2 ILGIDIGGANTKITELHENGEF-KVHHLYFPM   32 (334)
T ss_dssp             EEEEEEC--CEEEEEECSTTCC-EEEEC----
T ss_pred             eeEEEecccceeeeeecCCCce-EEEEEecCC
Confidence            7999999999999999989988 666676674

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=87.38  E-value=0.91  Score=48.69  Aligned_cols=62  Identities=15%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             CeEEEEecCccceeeEEEcCCCC-----EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010           55 SVFLGVDVGTGSARAGLFDESGK-----LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~-----vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~  118 (621)
                      ..||+||+|+||.|+++++..|.     .+...+..+++-.  ..-.-..+++|+.+.++|.+.+++.+
T Consensus        77 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~~~Ip~--~l~~gt~~eLFd~IA~~i~~fl~~~~  143 (470)
T 3f9m_A           77 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPE--DAMTGTAEMLFDYISECISDFLDKHQ  143 (470)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEECCH--HHHSSBHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEEecCceEEEEEEEECCCCCCcceEEEEEEeecCCh--HhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            46899999999999999996443     3433333443211  01122578999999999999998754

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=87.02  E-value=1.8  Score=47.49  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        51 ~m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      .|++.++||||-.+..+-++|++.+++++........ ...+|.+...+ ..=.+.+...+++++++  +...+|.+|++
T Consensus         2 ~m~~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~-~~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id~ia~   78 (540)
T 3en9_A            2 AMDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYK-PPKQGINPREAADHHAETFPKLIKEAFEV--VDKNEIDLIAF   78 (540)
T ss_dssp             -CCSCEEEEEECSSSEEEEEEEETTSCEEEEEEEECC-CCCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCCEEEE
T ss_pred             CcccceEEEEEcCccceEEEEEECCCeEEEEEEEeec-CCCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCcEEEE
Confidence            3444589999999999999999987788887765432 11233332222 33355666777777776  56778999998


Q ss_pred             cC
Q 007010          130 AA  131 (621)
Q Consensus       130 s~  131 (621)
                      |.
T Consensus        79 ~~   80 (540)
T 3en9_A           79 SQ   80 (540)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=86.77  E-value=0.85  Score=45.77  Aligned_cols=26  Identities=12%  Similarity=0.050  Sum_probs=21.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGS   81 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~   81 (621)
                      .+.+|||+|+|.+|+++++ +++++..
T Consensus        20 ~~~iGIDiGsTt~K~V~~~-~~~i~~~   45 (287)
T 2ews_A           20 HMKVGIDAGGTLIKIVQEQ-DNQRTFK   45 (287)
T ss_dssp             -CEEEEEECSSEEEEEEEC-SSCEEEE
T ss_pred             CeEEEEEEChhhEEEEEEc-CCEEEEE
Confidence            3789999999999999994 6777755

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=86.37  E-value=1.4  Score=48.38  Aligned_cols=79  Identities=20%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeecc--CCCchhHHHHHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAAILG  559 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~--~~e~~alGAA~lA  559 (621)
                      ..+++.   ++.+.++-.+.+.+..+.+. ..+++|.++||.+.|..+++.+....+. .|.++.  ...+.++|+|+.+
T Consensus       280 ~~dIAa---sfQ~~l~~~L~~~~~~a~~~-tg~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~a  355 (576)
T 3ven_A          280 YRDLAA---TAQAALERAVFGLADSVLAR-TGERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAAV  355 (576)
T ss_dssp             GHHHHH---HHHHHHHHHHHHHHHHHHHH-HTCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHHH
Confidence            567665   55555554444544443321 2467999999999999999998887765 665543  4567789999998


Q ss_pred             Hhhccc
Q 007010          560 AVAAKR  565 (621)
Q Consensus       560 ~~a~G~  565 (621)
                      ..-.|.
T Consensus       356 ~~~~g~  361 (576)
T 3ven_A          356 AVELGD  361 (576)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            766554

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=85.27  E-value=0.75  Score=46.90  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPI   86 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~   86 (621)
                      .++|+||-||||+|+-++|.+|+++.+.+.+-
T Consensus         7 ~~~IavDWGTSnlRa~l~~~~g~vl~~~~~~~   38 (330)
T 3t69_A            7 GYYAAVDWGTSSFRLWIIGEDGAVLAERRSAE   38 (330)
T ss_dssp             -CEEEEEECSSCEEEEEECTTSCEEEEEEESC
T ss_pred             CCEEEEEecchheehheecCCCCchhhhcCCc
Confidence            57899999999999999999999999876654

>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*

Probab=85.14  E-value=1.7  Score=43.15  Aligned_cols=31  Identities=13%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEee
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSP   85 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~   85 (621)
                      ...|.||+|-|++|..+||.+++++...+..
T Consensus        23 ~M~L~IDiGNT~ik~g~~~~~~~~~~~~r~~   53 (271)
T 2f9w_A           23 SMILELDCGNSLIKWRVIEGAARSVAGGLAE   53 (271)
T ss_dssp             CEEEEEEECSSCEEEEEEETTTEEEEEEEES
T ss_pred             CcEEEEEeCCCeeEEEEEeCCCEEEEEEEec
Confidence            4689999999999999998656676655543

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=81.42  E-value=2.2  Score=43.35  Aligned_cols=71  Identities=18%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             eEEEEecCccceeeEEEcC-CCC--EEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHH---HHHHcCCCCCCEEE
Q 007010           56 VFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDS---ACSLANVDGEEVKG  126 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~-~g~--vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~---~~~~~~~~~~~I~a  126 (621)
                      .+.+||+||.++|..+++. ++.  ++...+.+..+-.   ..|  ..+++.+ +..++++++   .++..+  ..+|.+
T Consensus        13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g--~ls~eai-~r~~~~L~~f~~~~~~~~--v~~i~~   87 (315)
T 1t6c_A           13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETG--RLQEDRI-EETIQVLKEYKKLIDEFK--VERVKA   87 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHS--SCCHHHH-HHHHHHHHHHHHHHHHTT--CSEEEE
T ss_pred             EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccC--CcCHHHH-HHHHHHHHHHHHHHHHCC--CCeEEE
Confidence            5788999999999999994 442  3444444433221   112  2233333 333344443   334433  356777


Q ss_pred             EEEcC
Q 007010          127 VGFAA  131 (621)
Q Consensus       127 Igis~  131 (621)
                      ++-++
T Consensus        88 vATsA   92 (315)
T 1t6c_A           88 VATEA   92 (315)
T ss_dssp             EECHH
T ss_pred             EEcHH
Confidence            76533

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=80.97  E-value=2.5  Score=46.00  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             eeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C--CCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeec
Q 007010          472 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH---G--HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILP  545 (621)
Q Consensus       472 g~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~---g--~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~  545 (621)
                      ..+..+...+.-+. .++.|--+.-..|-. ..++.+...   +  +.+..|+++||+|+-+-..++..++|+. +|++-
T Consensus       505 ~~L~~I~~R~~vEE-lelVR~~ak~~vfv~-n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiG  582 (607)
T 1nbw_A          505 GELVPIDNASPLEK-IRLVRRQAKEKVFVT-NCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAG  582 (607)
T ss_dssp             TEEEEECCSSCHHH-HHHHHHHHHHHHHHH-HHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEE
T ss_pred             cceeeeCCCcchHH-HHHHHHHHhhhhhhH-HHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence            56667754444555 445555443333322 234544332   2  2458899999999999999999999999 88763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	621
d2p3ra1	252	c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co	1e-28
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	6e-28
d1r59o2	235	c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus	4e-16
d1zc6a1	114	c.55.1.5 (A:8-121) Probable N-acetylglucosamine ki	3e-09
d2ch5a2	117	c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAG	2e-05
d2hoea3	128	c.55.1.10 (A:72-199) N-acetylglucosamine kinase {T	4e-05
d1huxa_	259	c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp	0.001
d1z05a3	128	c.55.1.10 (A:81-208) Transcriptional regulator VC2	0.004

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score =  110 bits (276), Expect = 6e-28
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 41/282 (14%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            + +D GT S+RA +FD +GK +GS+     Q + +   +E ++ +IW+++ + +  A  
Sbjct: 3   VMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFI 62

Query: 116 LANVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 174
            + +  E + G+G      + V  D           G    N IVW   ++   A+++  
Sbjct: 63  ESGIRPEAIAGIGITNQRETTVVWDKT--------TGQPIANAIVWQSRQSSPIADQLKV 114

Query: 175 RNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGDD 228
                 + +  G  +       K+ W+ +N++ +          +  +  WL ++ T   
Sbjct: 115 DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQ 174

Query: 229 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288
                 +    T                ++    WD E  + + +        + +   V
Sbjct: 175 VHVTDYSNASRT-------------MLYNIHKLEWDQEILDLLNI-------PSSMLPEV 214

Query: 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM 330
                  G                 P+     D  A   G M
Sbjct: 215 KSNSEVYGH-----TRSYHFYGSEVPIAGMAGDQQAALFGQM 251

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 76.1 bits (186), Expect = 4e-16
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511
           ++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++     
Sbjct: 87  VYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTMKKD 143

Query: 512 -GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 570
            G  I  L   GG AKN L +Q  ADI+   +      E+  LGAA L  +A   +  L 
Sbjct: 144 SGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL- 202

Query: 571 EAMKAMNAAGQVIHPSKDPKV-----KKYHDA 597
           + +K+M   GQ+  P    +      + +  A
Sbjct: 203 DELKSMAEEGQMFTPEMPAEERDNLYEGWKQA 234

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 8/113 (7%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           S    +GVD G    R  L    G  L  A            + Q     W A+ + +++
Sbjct: 2   SIRYLIGVDGGGTGTRIRLHASDGTPLAMA------EGGASALSQGIAKSWQAVLSTLEA 55

Query: 113 ACSLANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRA 165
           A   A +              S V                    + +  D   
Sbjct: 56  AFQQAGLPAAPASACAIGLGLSGVHNRQWA--GEFESQAPGFARLSLATDGYT 106

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSAC 114
           +++ GV+ G   +   L  E GK+L  A          +     +      I   V+ A 
Sbjct: 3   AIYGGVEGGGTRSEVLLVSEDGKILAEADGL-----STNHWLIGTDKCVERINEMVNRAK 57

Query: 115 SLANVD-GEEVKGVGFAAT 132
             A VD    ++ +G + +
Sbjct: 58  RKAGVDPLVPLRSLGLSLS 76

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
            LG++V      A L D S  +L                +    +  + +   +D A  +
Sbjct: 6   VLGIEVTRDEIAACLIDASMNIL-------AHEAHPLPSQSDREETLNVMYRIIDRAKDM 58

Query: 117 ANVDGEEVKGVGFAATCSLVAVDADGSPVSVSWN 150
               G ++  +  AA      +D +   +    N
Sbjct: 59  MEKLGSKLSALTVAAPG---PIDTERGIIIDPRN 89

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 497 IAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGA 555
                  ++   N     +  ++  GG+A+N        + +G  I        +  LGA
Sbjct: 191 HRSVASRVIGLANRV-GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGA 249

Query: 556 AILGAVAAKR 565
           A+     A +
Sbjct: 250 ALYAYKKAAK 259

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 8/77 (10%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           FL + +G G     L +  G++L           + D  E    D+   +   ++     
Sbjct: 6   FLSMRLGRGYLTIALHELGGEVLID--------TKIDIHEIDQDDVLARLLFEIEEFFQT 57

Query: 117 ANVDGEEVKGVGFAATC 133
                + V  +      
Sbjct: 58  YAAQLDRVTSIAITLPG 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	621
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.28
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	98.52
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	98.47
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	98.46
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	98.26
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	98.21
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	98.07
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	97.95
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	97.75
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	97.7
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	97.49
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	97.16
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.11
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	96.95
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	96.82
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	96.64
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	96.48
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.43
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	95.15
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	95.11
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	95.01
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	94.9
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	94.77
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	94.7
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	93.55
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	93.44
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	93.07
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	92.9
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	92.35
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	91.77
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	90.39
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	90.22
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	86.5
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	86.47
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	85.11
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	84.67
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	82.07
d2e1za1	189	Propionate kinase {Salmonella typhimurium [TaxId:	81.38

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=1.2e-46  Score=378.57  Aligned_cols=240  Identities=18%  Similarity=0.356  Sum_probs=211.0

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (621)
                      +|+||||+|||++|+++||.+|+++++.+.+++... ++|++||||++||+++++++++++++.+.++.+|++|+||+| 
T Consensus         1 nyvlgiDiGTtsvKa~l~D~~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~~~~~~~~i~aI~is~~~   80 (252)
T d1r59o1           1 NYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQR   80 (252)
T ss_dssp             CEEEEEBCCSSBCBCCEECSSSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTTTTCCTTSEEEEEECCCS
T ss_pred             CEEEEEEecccceeeeEEeCCCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhhhhhcccccceEEEeCCc
Confidence            599999999999999999999999999999998665 899999999999999999999999888888899999999998 


Q ss_pred             CceEEecC-CCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010          133 CSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  209 (621)
Q Consensus       133 ~~~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  209 (621)
                      +++|++|+ +|+|+         +|+|+|+|+|+.+++++++...  +.++++||.++++.++++||+|+++|+||+|++
T Consensus        81 ~~~v~~D~~~G~~l---------~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  151 (252)
T d1r59o1          81 ETTVVWDKTTGQPI---------ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEK  151 (252)
T ss_dssp             SCCCCBCSSSCCCS---------SCCBCTTCCSSCHHHHHHHHHTCHHHHTTTTCCCSSTTSHHHHSHHHHSSSSSSSTT
T ss_pred             ceEEEEECCCCCCc---------ccccccCccchHHHHHHHHhcCCHHHHHHHHCCCCCccchHHHHHHHHHhhhHHHHH
Confidence            99999996 59999         8999999999999999998765  678899999999999999999999999999999


Q ss_pred             hcc----eecchhHHhhhhccccc-cccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCcccccccccc
Q 007010          210 VFR----WMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI  284 (621)
Q Consensus       210 ~~~----~l~~~dyl~~~LTG~~~-~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i  284 (621)
                      +.+    +..+++||.|+|||... .++.+.              ++.|++||+++++|++++++.+||++.+   ||  
T Consensus       152 ~~~~~~~~~~~~~~l~~~Ltg~~~~~~d~s~--------------as~t~~~d~~~~~w~~~l~~~~gi~~~~---LP--  212 (252)
T d1r59o1         152 ADNGELLFGTIDSWLVWKLTDGQVHVTDYSN--------------ASRTMLYNIHKLEWDQEILDLLNIPSSM---LP--  212 (252)
T ss_dssp             TTTTCCBCCCHHHHHHHTSSSSCCCEECHHH--------------HTTSSSBCTTTSSBCHHHHTTTTCCSSS---SC--
T ss_pred             HHhccccccchHHHHHHHhcCCCcccccccc--------------hhhccccCcccccchHHHHHHhCCCHHH---CC--
Confidence            876    77889999999998542 233332              5678899999999999999999999754   47  


Q ss_pred             CcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhccc
Q 007010          285 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV  329 (621)
Q Consensus       285 ~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~  329 (621)
                        +++++++++|. +++    .+|++.|+||++|+||++||++|.
T Consensus       213 --~l~~~g~~~G~-v~~----~~~l~~g~pV~~g~gD~~aa~iG~  250 (252)
T d1r59o1         213 --EVKSNSEVYGH-TRS----YHFYGSEVPIAGMAGDQQAALFGQ  250 (252)
T ss_dssp             --EECCSSSCCBC-CSS-----------SCEEEECCTTTSHHHHT
T ss_pred             --CcccCCCceEE-eCh----hhcCCCCCeEEEEhHHHHHHHHhC
Confidence              68899999997 875    467889999999999999999996

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=1e-41  Score=337.80  Aligned_cols=225  Identities=22%  Similarity=0.342  Sum_probs=184.6

Q ss_pred             ceEEEEecccceeccee-CcccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCH
Q 007010          350 HRMVLVCGTSTCHMAVS-RNKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSL  425 (621)
Q Consensus       350 ~~~~~~~GTs~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~  425 (621)
                      |++.++.||++.+++.+ .++..++ +.+..++ +..++  .|++++.++++|.+++|+++.+...+.            
T Consensus         4 G~~k~T~GTg~~v~~~tg~~~~~~~~gll~t~~-~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~------------   70 (235)
T d1r59o2           4 GMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIG-YGINGKVYYALEGSIFVAGSAIQWLRDGLRMIET------------   70 (235)
T ss_dssp             TCBCCEESSSEECEEECTTSCCCCSSSCEEEEC-CCSSSCCCEEEECCCSCSSHHHHHTTTTSCSSSS------------
T ss_pred             CCeEeccccceEEEEecCCccccCCCCcEEEEE-EEeCCccEEEeHHHHHHHHHHHHHHHhhhhcccc------------
Confidence            57888999998877766 3444444 3333333 33344  599999999999999999998753211            


Q ss_pred             HHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007010          426 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIV  505 (621)
Q Consensus       426 ~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l  505 (621)
                       +.+...++.         .++++++++|+|||.|+|+|+||+++||+|+||+.+|++.|++   ||++|||||++|+++
T Consensus        71 -~~~~~~~~~---------~~~~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~~~~~l~---rAvlEgiaf~~~~~~  137 (235)
T d1r59o2          71 -SPQSEELAA---------KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVI  137 (235)
T ss_dssp             -GGGGTTTTS---------SSSSCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTCCHHHHH---HHHHHHHHHHHHHHH
T ss_pred             -hhhhccccc---------ccCCCCcceeeehhhhccccccCCCcceeEeecccCCCHHHHH---HHHHHHHHHHHHHHH
Confidence             111111111         2368999999999999999999999999999999999999965   599999999999999


Q ss_pred             HHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEc
Q 007010          506 EHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIH  584 (621)
Q Consensus       506 ~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~  584 (621)
                      |.|++ .+.++++|+++||+++|++|+||+|||+|+||+++...|++++|||++|++++|.|+|++++ .++.+..++|+
T Consensus       138 e~~~~~~g~~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e~~alGaA~la~~~~G~~~~~~~~-~~~~~~~~~~~  216 (235)
T d1r59o2         138 DTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFT  216 (235)
T ss_dssp             HHHHHHHCCCCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCCCTTTHHHHHHHHHHHTSSSSSTTS-GGGCCEEEEEC
T ss_pred             HHHHHhcCCCCcEEEecCcchhCHHHHhhhhhccceeeeeccccchHHHHHHHHHHHHcCCCCCHHHH-HhccCCCcEEc
Confidence            99987 58899999999999999999999999999999999999999999999999999999999874 66777788999


Q ss_pred             CCCChhhHHHHHHHHHHHHH
Q 007010          585 PSKDPKVKKYHDAKYLIFRE  604 (621)
Q Consensus       585 P~~~~~~~~~y~~~y~~y~~  604 (621)
                      |  +.+.+ .|+++|++|++
T Consensus       217 P--~~~~~-~~~~~Y~~wkk  233 (235)
T d1r59o2         217 P--EMPAE-ERDNLYEGWKQ  233 (235)
T ss_dssp             C--CSTTS-SHHHHHTTTTT
T ss_pred             C--CCCHH-HHHHHHHHHHh
Confidence            9  55543 48999999876

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.28  E-value=4.9e-12  Score=108.96  Aligned_cols=100  Identities=17%  Similarity=0.259  Sum_probs=78.1

Q ss_pred             CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCE----EEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV----KGVGF  129 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I----~aIgi  129 (621)
                      |+|+||||+|+|++|++|+|++|+++.+.+.+      +++.+++++++|+.+.+++++++++.+....++    .++++
T Consensus         3 m~y~lGID~GGT~tk~~l~d~~G~il~~~~~~------~~~~~~~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~~~~g~   76 (114)
T d1zc6a1           3 IRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG------ASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGL   76 (114)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTCCEEEEEEES------CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEE
T ss_pred             ccEEEEEEcCcceEEEEEEcCCCCEEEEEEcc------CCCcccCHHHHHHHHHHHHHHHHHHcCCChhhhceeEEEEEe
Confidence            57999999999999999999999999876543      345689999999999999999999988777665    44566


Q ss_pred             cCC---CceEEecCCCCceeecCCCCCCcceeEEcCcchHHH
Q 007010          130 AAT---CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ  168 (621)
Q Consensus       130 s~~---~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~  168 (621)
                      ++.   .....+.+...|+         .|+++++|.+++..
T Consensus        77 aG~~~~~~~~~l~~~~~~~---------~~v~v~nDa~~A~~  109 (114)
T d1zc6a1          77 SGVHNRQWAGEFESQAPGF---------ARLSLATDGYTTLL  109 (114)
T ss_dssp             SCCCTTSHHHHHHHTCCCC---------SEEEEECHHHHHHH
T ss_pred             cCCCcHHHHHHHHHhCCCC---------CeEEEECHHHHHHH
Confidence            553   2233344455555         68999999987654

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.52  E-value=1.3e-07  Score=80.67  Aligned_cols=74  Identities=22%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCceE
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (621)
                      |||||+|+|++|++++|.+|+++.+.+.+++        +.+++.+.+.+.++++++..+.+    .+.+|||+. .+  
T Consensus         2 yiGiDiGgT~i~~~l~d~~g~i~~~~~~~t~--------~~~~~~~~~~i~~~i~~~~~~~~----~~~~igi~~-pG--   66 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTP--------HTSYSAFLDAVCELVEEADQRFG----VKGSVGIGI-PG--   66 (117)
T ss_dssp             EEEEEECSSEEEEEEEETTCCEEEEEEEECC--------CSCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE-SS--
T ss_pred             EEEEEECcceEEEEEEeCCCCEEEEEEEeec--------ccCHHHHHHHHHHHHHHHHhhcC----cceeEEEec-CC--
Confidence            6999999999999999999999999888775        45788999999999998887653    344566522 33  


Q ss_pred             EecCC-CCce
Q 007010          137 AVDAD-GSPV  145 (621)
Q Consensus       137 ~vD~~-G~pl  145 (621)
                      ++|.+ |..+
T Consensus        67 ~vd~~~g~i~   76 (117)
T d2ap1a2          67 MPETEDGTLY   76 (117)
T ss_dssp             BSCCTTSCCB
T ss_pred             ccccccceee
Confidence            34655 5443

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.6e-07  Score=81.40  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      .|+||||+|.++++++++|.+|+++.+.+.+++       ...+++.+.+.+.+.++++++..+....+|.+|||+. .|
T Consensus         4 ~~~igidig~~~i~~~l~d~~G~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~-pG   75 (128)
T d2hoea3           4 AYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA-PG   75 (128)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SS
T ss_pred             EEEEEEEECCCEEEEEEEcCCCCEEEEEEEecc-------cCCCHHHHHHHHHHHHHHHHHHhccccCceEEEecce-ee
Confidence            599999999999999999999999999888876       3468889999999999988877666678899999943 33


Q ss_pred             eEEecCC-CCceeecCCCCCCcceeEEcCcc
Q 007010          135 LVAVDAD-GSPVSVSWNGDSRRNIIVWMDHR  164 (621)
Q Consensus       135 ~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~R  164 (621)
                      .  +|.+ |..+.        .|.+.|.|-.
T Consensus        76 ~--vd~~~g~i~~--------~~~l~w~~~~   96 (128)
T d2hoea3          76 P--IDTERGIIID--------PRNFPLSQIP   96 (128)
T ss_dssp             C--EETTTTEECC--------CSSCTTBTSC
T ss_pred             e--EcCCCCEEEe--------eccccccCCc
Confidence            2  4665 55543        3445576644

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=98.46  E-value=5.2e-07  Score=78.02  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=70.6

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++||||||.++++++++|.+|+++.+.+.+++        +.++++..+.+.+.+++++++.+.+..+|.+|||+. ++ 
T Consensus         5 ~~lgi~ig~~~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi~~-pG-   74 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIH--------EIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PG-   74 (128)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEEECC--------CCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SS-
T ss_pred             EEEEEEECCCEEEEEEEcCCCCEEEEEEeccc--------cCCHHHHHHHHHHHHHHHHHHcccccccceEEEeee-ee-
Confidence            68999999999999999999999998887775        457788999999999999998887778899999942 33 


Q ss_pred             EEecCCCCceeecCCCCCCcceeEEcCcc
Q 007010          136 VAVDADGSPVSVSWNGDSRRNIIVWMDHR  164 (621)
Q Consensus       136 v~vD~~G~pl~~~~~~~~~~p~i~W~D~R  164 (621)
                       ++|.+...+..       .|.+.|.+--
T Consensus        75 -~vd~~~~~~~~-------~~~~~~~~~~   95 (128)
T d1z05a3          75 -LVNSEQGIVLQ-------MPHYNVKNLA   95 (128)
T ss_dssp             -EEETTTTEEEE-------CSSSBCSSBC
T ss_pred             -eeeccceeeec-------cccCCCCCcc
Confidence             45665333221       3444566643

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.5e-06  Score=75.12  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (621)
                      -++||||+|.++++++++|.+|+++.+.+.+++        ..+++++.+.+.+.+++++++.+.+..+|.+|||+. +|
T Consensus         4 ~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~--------~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~~-pG   74 (129)
T d1z6ra2           4 WHYLSLRISRGEIFLALRDLSSKLVVEESQELA--------LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-PG   74 (129)
T ss_dssp             CEEEEEEEETTEEEEEEEETTCCEEEEEEEECC--------SSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-SS
T ss_pred             eEEEEEEECCCEEEEEEEcCCCCEEEEEEeecc--------ccchhHHHHHHHHHHHHHHHhcCcccccceeEEEee-ee
Confidence            379999999999999999999999999888875        456677888889999999988777778999999943 33


Q ss_pred             eEEecCC-CCce
Q 007010          135 LVAVDAD-GSPV  145 (621)
Q Consensus       135 ~v~vD~~-G~pl  145 (621)
                        ++|.+ |...
T Consensus        75 --~v~~~~~~~~   84 (129)
T d1z6ra2          75 --IIDTENGIVH   84 (129)
T ss_dssp             --EEETTTTEEE
T ss_pred             --eeeeccccee
Confidence              34555 4433

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.2e-06  Score=73.12  Aligned_cols=70  Identities=23%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDG-EEVKGVGF  129 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~-~~I~aIgi  129 (621)
                      ++|||||-|+|++|++|+|++|+++.+.+.+-.     .......+++++.+.+++++++++.+.+. .+|.+|++
T Consensus         3 ~~~~GIDgGGTkT~~~l~d~~G~~l~~~~~g~~-----N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i~~   73 (117)
T d2ch5a2           3 AIYGGVEGGGTRSEVLLVSEDGKILAEADGLST-----NHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGL   73 (117)
T ss_dssp             CEEEEEEECTTCEEEEEEETTSCEEEEEEECCC-----CHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEE
T ss_pred             cEEEEEEcChhhEEEEEECCCCCEEEEEEcCCC-----CcchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEEEE
Confidence            699999999999999999999999987765432     12346778899999999999998876543 36666655

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2e-06  Score=73.35  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++||||||+|++|++++|.+|+++.+.+.+++       ..++++.+.+.+.+.++++.       .++.+|||+. .+ 
T Consensus         2 ~~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~-------~~~~~igI~~-pG-   65 (119)
T d2aa4a1           2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP-------ASQTPEALRDALSALVSPLQ-------AHAQRVAIAS-TG-   65 (119)
T ss_dssp             CEEEEEECSSEEEEEEECTTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHTTTG-------GGCSEEEEEE-SS-
T ss_pred             eEEEEEeCcCEEEEEEEcCCCCEEEeEEEecc-------ccCcHHHHHHHHHHHHHHhh-------ccCceEEEEe-ee-
Confidence            47999999999999999999999999888876       35677777766655554432       3456677732 34 


Q ss_pred             EEecCC
Q 007010          136 VAVDAD  141 (621)
Q Consensus       136 v~vD~~  141 (621)
                       ++|.+
T Consensus        66 -~v~~~   70 (119)
T d2aa4a1          66 -IIRDG   70 (119)
T ss_dssp             -EEETT
T ss_pred             -eEcCC
Confidence             34555

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.95  E-value=9.6e-06  Score=68.55  Aligned_cols=69  Identities=20%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (621)
                      ++++||+|+|++|++++|.+|+++.+.+.+++         .+.+++.    +.+.+.+++     .++.+|||+. .| 
T Consensus         2 ~i~~iDiGgT~i~~~l~d~~g~i~~~~~~~t~---------~~~~~~~----~~i~~~~~~-----~~i~gIGi~~-pG-   61 (114)
T d2gupa1           2 TIATIDIGGTGIKFASLTPDGKILDKTSISTP---------ENLEDLL----AWLDQRLSE-----QDYSGIAMSV-PG-   61 (114)
T ss_dssp             CEEEEEEETTEEEEEEECTTCCEEEEEEECCC---------SSHHHHH----HHHHHHHTT-----SCCSEEEEEE-SS-
T ss_pred             eEEEEEeCcccEEEEEEcCCCCEEEEEEEccc---------ccHHHHH----HHHHHHhhh-----cccceEEEec-cc-
Confidence            47899999999999999999999988777654         2334444    344444432     4678888832 33 


Q ss_pred             EEecCC-CCce
Q 007010          136 VAVDAD-GSPV  145 (621)
Q Consensus       136 v~vD~~-G~pl  145 (621)
                       ++|.+ |...
T Consensus        62 -~vd~~~g~i~   71 (114)
T d2gupa1          62 -AVNQETGVID   71 (114)
T ss_dssp             -EECTTTCBEE
T ss_pred             -cccCCccEEE
Confidence             46766 6554

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=3.1e-05  Score=65.62  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeec
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ   87 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~   87 (621)
                      +++|||+|+|++|++++|.+|+++.+.+.|++
T Consensus         1 l~~giDiGgT~i~~~l~d~~g~i~~~~~~~t~   32 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGREDGTIIDRIEFPTK   32 (118)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEEEECC
T ss_pred             CEEEEEeccCEEEEEEEcCCCCEEEEEEecCC
Confidence            37999999999999999999999988777653

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=97.70  E-value=3.5e-05  Score=66.09  Aligned_cols=68  Identities=22%  Similarity=0.389  Sum_probs=49.1

Q ss_pred             CeEEEEecCccceeeEEEcCC-CCEEEE-EEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDES-GKLLGS-ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~-g~vv~~-~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      .++||||+|.|++|++++|.+ |+++.+ .+.+++       ...+++.+.+.+.+.++++.++.. ...++.+|||+
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~-------~~~~~~~~~~~i~~~~~~l~~~~~-~~~~~~gIGi~   71 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------QPATPESVAEAVALVVAELSARPE-APAAGSPVGVT   71 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHTSTT-CCCTTCCEEEE
T ss_pred             CCEEEEEECcceEEEEEEECCCCEEEEEEeecccc-------cCCCHHHHHHHHHHHHHHHHhccc-cccccceeeec
Confidence            468999999999999999965 555543 345544       245688899999999988765533 33456677773

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.49  E-value=5.7e-05  Score=72.20  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC-CCchhHHHHHHHHh
Q 007010          492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILGAV  561 (621)
Q Consensus       492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~alGAA~lA~~  561 (621)
                      ..++.+.-   .++..+... ..++.|++.||.++|+.+.+.+.+.++.+|.++.. +++.++|||++|..
T Consensus       189 ~~~~~~~~---~~~~~~~~~-~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~  255 (259)
T d1huxa_         189 GIHRSVAS---RVIGLANRV-GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK  255 (259)
T ss_dssp             HHHHHHHH---HHHHHHHTT-CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHhc-cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence            44444433   333334332 35678999999999999999999999999999884 55779999999974

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.16  E-value=0.00028  Score=65.28  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHH
Q 007010          481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAA  556 (621)
Q Consensus       481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA  556 (621)
                      -+|+++..+.+-+++.+.-.+.   +.|++.+   ..++.|.++||++++|.+.+++.+.|+.++.+.. ..++.|.|||
T Consensus       115 itr~~~~~~~~~~~~~~~~~i~---~~l~~a~~~~~~Id~v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa  191 (198)
T d1dkgd2         115 VTRAKLESLVEDLVNRSIELLK---VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAA  191 (198)
T ss_dssp             EEHHHHHHHSHHHHHHHHHHHH---HHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHH
T ss_pred             EcHHHHHHHHHHHHHHHHHHHH---HHHHHhCCChhHCcEEEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHHHHHHH
Confidence            3677766544444444433233   3344443   3578999999999999999999999998876544 5678899999


Q ss_pred             HHHHh
Q 007010          557 ILGAV  561 (621)
Q Consensus       557 ~lA~~  561 (621)
                      +.|+.
T Consensus       192 ~~aa~  196 (198)
T d1dkgd2         192 VQGGV  196 (198)
T ss_dssp             HHTTT
T ss_pred             HHHHh
Confidence            98764

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.11  E-value=0.00036  Score=64.12  Aligned_cols=80  Identities=16%  Similarity=0.250  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-Cceeec-cCCCchhHHHHHHH
Q 007010          482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILP-RENESVLLGAAILG  559 (621)
Q Consensus       482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~~-~~~e~~alGAA~lA  559 (621)
                      +++++..+.+-.++.+.-.+++.++.......+++.|.++||+++.|.+.+.+.+.++ .++... +..++.|.|||+.|
T Consensus       110 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~a  189 (193)
T d1bupa2         110 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  189 (193)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHH
Confidence            4666655455555555444444444332112357899999999999999999999995 677654 45678899999998


Q ss_pred             Hh
Q 007010          560 AV  561 (621)
Q Consensus       560 ~~  561 (621)
                      +.
T Consensus       190 a~  191 (193)
T d1bupa2         190 AI  191 (193)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00061  Score=56.43  Aligned_cols=27  Identities=30%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGS   81 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~   81 (621)
                      +|+|++|||+|++|++++|.++..+..
T Consensus         2 ~~~L~~DIGGTn~r~alv~~~~~~l~~   28 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDIASGEISQ   28 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEE
T ss_pred             cEEEEEEECchhEEEEEEEcCCCeEEE
Confidence            699999999999999999987664443

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00047  Score=67.97  Aligned_cols=58  Identities=22%  Similarity=0.114  Sum_probs=37.8

Q ss_pred             CeEEEEecCccceeeEEEcCCCCEEEEEEe-eeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDESGKLLGSASS-PIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~-~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      ||+|+||||+|++|++++|.++..+...+. +.+          +.+.    +.+.+++++++.+   .++.+|||
T Consensus         1 ~y~L~~DIGGT~ir~glvd~~~~~i~~~~~~~~~----------~~~~----~~~~i~~~~~~~~---~~~~~igI   59 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDIASGEISQAKTYSGL----------DYPS----LEAVIRVYLEEHK---VEVKDGCI   59 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG----------GCSC----HHHHHHHHHHHSC---CCCCEEEE
T ss_pred             CEEEEEEEChhheeeEEEECCCCEEEEEEEeCCC----------CHhH----HHHHHHHHHHhcC---CCcceEEE
Confidence            699999999999999999977655544333 322          1122    3345666666654   35666666

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0072  Score=55.97  Aligned_cols=146  Identities=16%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             CeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCC
Q 007010          386 KFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI  465 (621)
Q Consensus       386 ~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~  465 (621)
                      +.|-..|++..+|.+++=+.+.+.            |.+.++++++++++=.+. .+        . +-+|...|....+
T Consensus        47 ~~~~~iggT~~gGgtf~gla~lLl------------g~~~~~eI~klA~~G~~~-~~--------d-l~~~di~~~~~s~  104 (212)
T d2i7na2          47 DNYKRVTGTSLGGGTFLGLCCLLT------------GCETFEEALEMAAKGDST-NV--------D-KLVKDIYGGDYER  104 (212)
T ss_dssp             TEEEEEEEESCSHHHHHHHHHHHH------------CCCSHHHHHHHHHHCCGG-GT--------S-EEHHHHHSSCBGG
T ss_pred             CceEEecCCcccHHHHHHHHHHhc------------CCCCHHHHHHHHhcCCcc-cc--------C-ccCCCcCCCCCCc
Confidence            345555666677777765555442            456678888877652110 01        1 3344444322111


Q ss_pred             --CCCCCceeEEcC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH-HHHHH
Q 007010          466 --ADPKSKGIICGM------TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHAD  536 (621)
Q Consensus       466 --~d~~arg~f~Gl------~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~-Qi~Ad  536 (621)
                        -......+.+|-      ..+.+++|+++   ++++.++..+-+......+. ..+++|+++||.+.|..++ ++++.
T Consensus       105 sgL~t~~~a~~fgk~~~~~~~~~~~~~Diaa---S~q~~v~~~l~~~a~~aa~~-~~~k~iv~~Ggv~aN~~lr~~l~~~  180 (212)
T d2i7na2         105 FGLQGSAVASSFGNMMSKEKRDSISKEDLAR---ATLVTITNNIGSIARMCALN-ENIDRVVFVGNFLRINMVSMKLLAY  180 (212)
T ss_dssp             GTBCTTSEEETTTTTTSHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHH-HTCCCEEEESGGGCSSSHHHHHHHH
T ss_pred             ccCCHHHHHHHhhhhhhccccccCCHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCEEEEECcHhhCHHHHHHHHHH
Confidence              233444444442      13345778765   99999988887765544331 2467999999987665444 44443


Q ss_pred             h---h---CCceeeccC-CCchhHHHHH
Q 007010          537 I---I---GCPIILPRE-NESVLLGAAI  557 (621)
Q Consensus       537 v---l---g~pV~~~~~-~e~~alGAA~  557 (621)
                      +   +   +..+..++. .-++|+||++
T Consensus       181 ~~~~~~~~~i~~~Fp~~~~y~galGA~l  208 (212)
T d2i7na2         181 AMDFWSKGQLKALFLEHEGYFGAVGALL  208 (212)
T ss_dssp             HHHHHTTTSCCEEEETTTTCHHHHHHHH
T ss_pred             HHHHHhhCCceEEecCChhhhHHHHHHH
Confidence            3   2   678777775 4478999765

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0005  Score=62.64  Aligned_cols=76  Identities=14%  Similarity=0.046  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHH
Q 007010          484 KQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILG  559 (621)
Q Consensus       484 ~~~~~~~rAvlEgia~~~r~~l~~l~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA  559 (621)
                      ..+..+....++-+...+...++......   ...+.|+++||+|+-|...+++++.||+||.+.. ..++.|+|||+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~  183 (196)
T d1jcea2         104 GEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVL  183 (196)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHH
Confidence            33333344555555444444444322111   1235699999999999999999999999999875 5678899998853

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.43  E-value=0.003  Score=59.53  Aligned_cols=48  Identities=13%  Similarity=0.342  Sum_probs=37.3

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHH
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS  112 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~  112 (621)
                      |+||||+|+|++|++++|++|+++.+...+++         .++++..+.+.+.+++
T Consensus         3 ~~lGIDiGGT~~k~~vvd~~g~il~~~~~~t~---------~~~~~~~~~i~~~l~~   50 (259)
T d1huxa_           3 YTLGIDVGSTASKCIILKDGKEIVAKSLVAVG---------TGTSGPARSISEVLEN   50 (259)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEEECC---------SSCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCcceEEEEEEcCCCcEEEEEEecCC---------CCHHHHHHHHHHHHHH
Confidence            89999999999999999999999988777664         3445555555555544

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=95.15  E-value=0.061  Score=49.10  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CCeEEEEecCccceeeEEEcCCC--CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g--~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      +.-+|+||+|+|+.|+++++.+|  +.....+..+++-  ......+.+++|+.+.++|.+.+++.+..... .-+|+|
T Consensus        65 ~G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~ip--~~~~~~~~~~lFd~iA~~i~~fl~~~~~~~~~-l~lGfT  140 (208)
T d1bdga1          65 TGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIP--AEKMSGSGTELFKYIAETLADFLENNGMKDKK-FDLGFT  140 (208)
T ss_dssp             CEEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCC--TTTTTSBHHHHHHHHHHHHHHHHHHTTCCSSC-EEEEEE
T ss_pred             cceEEEEEecCceEEEEEEEecCCCcceEEEEEEeeCC--HHHccCCHHHHHHHHHHHHHHHHHhcCCCCCc-cccEEE
Confidence            35799999999999999999654  3222222223211  11123467899999999999999876543333 346664

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.11  E-value=0.0054  Score=57.78  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCC-CCHHHHHHHHHhh---CCceeeccC-CCchhHHHHH
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADII---GCPIILPRE-NESVLLGAAI  557 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga-~s~~w~Qi~Advl---g~pV~~~~~-~e~~alGAA~  557 (621)
                      .++.+.   +++|.++..+...+..+... ..+++|++.||+. .++.+.+.+.+.+   +..+..++. ..+.++|||+
T Consensus       189 ~~~~a~---~~~~~~~~~l~~~~~~~~~~-~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~  264 (267)
T d2ewsa1         189 PSNKLA---AVIGVVGEVVTTMAITVARE-FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALY  264 (267)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHH-TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHH
T ss_pred             hhhhHH---HHHHHHHHHHHHHHHHHHhh-cCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHH
Confidence            455543   77787777776665555432 3567899898865 6899999999886   566667664 4477999998


Q ss_pred             HH
Q 007010          558 LG  559 (621)
Q Consensus       558 lA  559 (621)
                      +|
T Consensus       265 L~  266 (267)
T d2ewsa1         265 LE  266 (267)
T ss_dssp             TC
T ss_pred             hc
Confidence            75

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.017  Score=52.35  Aligned_cols=62  Identities=19%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C--CCcCEEEEecCCCCCHHHHHHHHHhhCCceee
Q 007010          483 EKQLALLYLATVQGIAYGTRHIVEHCNAH----G--HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL  544 (621)
Q Consensus       483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~----g--~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~  544 (621)
                      +..+..++++.++-++-.++..++.+...    +  ..+..|+++||+|+-+-+.++++++||+||++
T Consensus        92 ~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri  159 (191)
T d1e4ft2          92 AKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRT  159 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHHHHHHHHHCCCeEE
Confidence            55677778888888887777777766431    1  12446999999999999999999999999975

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.90  E-value=0.051  Score=49.05  Aligned_cols=76  Identities=7%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             CeEEEEecCccceeeEEEc-CCC--CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFD-ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d-~~g--~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      .|+.+||+||+++|++++. .++  ++++....+..- -..|. -.|.+..-+++.++++++-++++..-.+..-+++++
T Consensus         2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~G-i~~G~-I~d~~~~~~~I~~~I~~aE~~a~~~i~~~v~v~~~~   79 (193)
T d1e4ft1           2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG-LDEGE-IKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS   79 (193)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCS-EETTE-ESCHHHHHHHHHHHHHHHHHHHTSCCCSCEEEEECC
T ss_pred             cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecCC-ccCCe-EEeHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEcC
Confidence            4899999999999999886 344  456665555321 13443 359999999999999999888776543334467765


Q ss_pred             C
Q 007010          132 T  132 (621)
Q Consensus       132 ~  132 (621)
                      .
T Consensus        80 ~   80 (193)
T d1e4ft1          80 V   80 (193)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.017  Score=52.83  Aligned_cols=74  Identities=16%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             CCeEEEEecCccceeeEEEcCC--CC-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010           54 RSVFLGVDVGTGSARAGLFDES--GK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~--g~-vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (621)
                      ...+|+||+|+|+.|+++++..  ++ .+...+..+++-.  ....-..+++++.+.++|.+.++..+..... .-+|+|
T Consensus        60 ~G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~ip~--~~~~~~~~eLFd~iA~~i~~fl~~~~~~~~~-~~lGfT  136 (205)
T d1czan3          60 NGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPI--EIMQGTGEELFDHIVSCISDFLDYMGIKGPR-MPLGFT  136 (205)
T ss_dssp             CEEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCH--HHHTSBHHHHHHHHHHHHHHHHHHHTCCSSC-CEEEEE
T ss_pred             cceEEEEEecCceEEEEEEEecCCCCceEEEEeeeecCCH--HHhcCCHHHHHHHHHHHHHHHHHhcCCCCCc-ccceEE
Confidence            4579999999999999998853  22 3333333333110  0112256889999999999999876543322 336664

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=94.70  E-value=0.041  Score=50.28  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=48.1

Q ss_pred             CeEEEEecCccceeeEEEcCCC-CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEc
Q 007010           55 SVFLGVDVGTGSARAGLFDESG-KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFA  130 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~g-~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis  130 (621)
                      .-+|+||+|+|+.|+++++.+| +.....+..+.+. ..-....+.+++|+.+.++|.+.+++... ...+..-+|+|
T Consensus        63 G~flalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip-~~~~~~~~~~~lFd~iA~~i~~f~~e~~~~~~~~~l~lGfT  139 (207)
T d1ig8a1          63 GDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLP-DAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFT  139 (207)
T ss_dssp             EEEEEEEECSSEEEEEEEEEESSSCEEEEEEEEECC-TTGGGCSCTHHHHHHHHHHHHHHHHHHCTTCCCSCEEEEEE
T ss_pred             ceEEEEEecCceEEEEEEEEcCCCceEEeeeeeeCC-HHHhcCCcHHHHHHHHHHHHHHHHHHhcccccCCcceeEEE
Confidence            4689999999999999999654 3333333333211 11112346788999999999999876432 22344456664

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.034  Score=50.86  Aligned_cols=64  Identities=11%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             CCeEEEEecCccceeeEEEcCCC--C-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 007010           54 RSVFLGVDVGTGSARAGLFDESG--K-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV  119 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d~~g--~-vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~  119 (621)
                      ...+|+||+|+|+.|++++..+|  . .+...+..+++-.  .......+++++.+.++|.+.+++.+.
T Consensus        62 ~G~flalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~ip~--~~~~~~~~~lFd~IA~~i~~fl~~~~~  128 (207)
T d1czan1          62 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPE--NIVHGSGSQLFDHVAECLGDFMEKRKI  128 (207)
T ss_dssp             CEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCH--HHHSSBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cceEEEEecCCceEEEEEEEeCCCCCccEEEEEEeecCCH--HHhcCCHHHHHHHHHHHHHHHHHhcCc
Confidence            35789999999999999998533  2 3333333333110  112335688999999999999876543

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.12  Score=46.94  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=46.6

Q ss_pred             CeEEEEecCccceeeEEEcCC-C---C-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           55 SVFLGVDVGTGSARAGLFDES-G---K-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~~-g---~-vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      .-+|+||+|+|+.|+++++.. +   + .+...+..+++ + ........+++|+.+.++|.+.+++.... .+-.-+|+
T Consensus        59 G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i-p-~~~~~~t~~~LFd~iA~~i~~fl~~~~~~-~~~lplGf  135 (205)
T d1v4sa1          59 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI-P-EDAMTGTAEMLFDYISECISDFLDKHQMK-HKKLPLGF  135 (205)
T ss_dssp             EEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC-C-STTTSSBHHHHHHHHHHHHHHHHHTTTCT-TCCCEEEE
T ss_pred             ceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC-C-hhhccCCHHHHHHHHHHHHHHHHHhhCCC-CCccccEE
Confidence            578999999999999999952 2   2 22222333332 1 11223467889999999999999865432 22233555


Q ss_pred             c
Q 007010          130 A  130 (621)
Q Consensus       130 s  130 (621)
                      |
T Consensus       136 T  136 (205)
T d1v4sa1         136 T  136 (205)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=93.07  E-value=0.087  Score=42.68  Aligned_cols=64  Identities=22%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      +|++|-|+|.+++++.| +|+++...+..-     -....++.+++.+.+.+.+.+.+..   ...+|..|.+
T Consensus         2 ilivDgGgTKT~~vl~d-~g~~i~~~~t~g-----~Np~~~~~~~~~~~l~~~~~~~l~~---~~~~i~~i~~   65 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSG-----INPFQQDRNEIDTALRSEVLPAIGQ---KASSIRAVYF   65 (107)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEEC-----CCTTTSCHHHHHHHHTTTTHHHHTT---STTTCCEEEE
T ss_pred             EEEEEeccccEEEEEEC-CCCeEEEEecCC-----cCcccCCHHHHHHHHHHHHHHHHhc---cccCCcEEEE
Confidence            68899999999999888 688877654321     0113466777777776655544432   3567777755

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.90  E-value=0.16  Score=43.68  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=28.0

Q ss_pred             CCCeEEEEecC-ccceeeEEEcCCCCEEEEEEe
Q 007010           53 SRSVFLGVDVG-TGSARAGLFDESGKLLGSASS   84 (621)
Q Consensus        53 ~~~~~lgIDiG-TtsiKa~l~d~~g~vv~~~~~   84 (621)
                      ..+.+||||=| .|.+|.+++|++|+++.....
T Consensus         3 ~~~~vlg~DPg~r~gck~AvlD~~G~vld~~vi   35 (149)
T d3bzka5           3 GPRATLGLDPGLRTGVKVAVVDATGKLLDTATV   35 (149)
T ss_dssp             CSCCEEEEECCSTTCEEEEEECTTSCEEEEEEE
T ss_pred             CCceEEEECCCcccccEEEEECCCCCEEEEEEE
Confidence            34689999999 899999999999999986554

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.35  E-value=0.16  Score=46.91  Aligned_cols=25  Identities=12%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             EEEecCccceeeEEEcCCCCEEEEE
Q 007010           58 LGVDVGTGSARAGLFDESGKLLGSA   82 (621)
Q Consensus        58 lgIDiGTtsiKa~l~d~~g~vv~~~   82 (621)
                      ||||+|+|++|++++|++|+++.+.
T Consensus         3 iGIDiGGT~ik~~lvd~~g~i~~~~   27 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQDNQRTFKTE   27 (267)
T ss_dssp             EEEEECSSEEEEEEECSSCEEEEEE
T ss_pred             EEEEEChhhEEEEEEeCCCcEEEEE
Confidence            8999999999999999999988653

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=91.77  E-value=0.18  Score=44.46  Aligned_cols=70  Identities=7%  Similarity=0.034  Sum_probs=43.8

Q ss_pred             eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc--CC-CccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK--EG-DCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~--~~-g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      -+|.|..|+||+|..|||.+ +.+.+.........  .. ...+|     .+...+++.+.+++.+++..+|.+||--.
T Consensus         3 kILViN~GSSSlK~alf~~~-~~~~~~~i~~~~~e~~~~~~i~d~-----~~~~~~~i~~~L~~~~~~~~~i~avghRv   75 (172)
T d1saza1           3 RILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDELGRFQKILDQ-----LEFREKIARQFVEETGYSLSSFSAFVSRG   75 (172)
T ss_dssp             EEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHHHTCSSGGGG-----HHHHHHHHHHHHHTTTCCGGGCSEEEEEC
T ss_pred             EEEEEcCChHhheEEEEeCC-CceeEEEEEEccccccccCcccch-----HHHHHHHHHHHHHHcCCChhcCeEEEECc
Confidence            47999999999999999854 45555555433111  11 11111     23334556666666677778899998743

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.39  E-value=0.3  Score=45.27  Aligned_cols=70  Identities=13%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CeEEEEecCccceeeEEEcC-CC--CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d~-~g--~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      +.+.||||||+++++++... ++  +++.....+..-. + | .-.|.+.    +.+++++++++++....+|..|-+..
T Consensus         1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi-K-G-~I~ni~~----~~~aI~~av~~A~~~~~~i~~i~in~   73 (239)
T d1nbwa2           1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM-K-G-TRDNIAG----TLAALEQALAKTPWSMSDVSRIYLNE   73 (239)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS-T-T-SGGGHHH----HHHHHHHHHTTSSCCGGGEEEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC-c-c-eEECHHH----HHHHHHHHHHHhccccccceEEEecC
Confidence            46899999999999999973 22  5667766665422 3 4 3446554    45667777777777777888887754

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=90.22  E-value=0.25  Score=40.25  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (621)
                      .|.||||-|++|.++|+ +++++...+.++.       ....++++...+...+    ..   ....+..+.+++
T Consensus         2 ~L~IDIGNT~ik~~l~~-~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~---~~~~i~~~~~ss   61 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITE-DGKTFRRWRLSTG-------VFQTEDELFSHLHPLL----GD---AMREIKGIGVAS   61 (118)
T ss_dssp             EEEEEECSSEEEEEEES-SSSSCEEEEEECC-------TTCCHHHHHHHHHHHH----GG---GGGGEEEEEEEE
T ss_pred             EEEEEECCCeEEEEEEE-CCEEEEEEEEccC-------ccccHHHHHHHHHHHH----hh---hhcccccceeec
Confidence            68899999999999997 5567766666654       2345666654433332    21   234677777744

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.56  Score=38.74  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=40.6

Q ss_pred             EEEEecCccceeeEEEcC-CCC--EEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEE
Q 007010           57 FLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVGF  129 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~-~g~--vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~~-~~~~~I~aIgi  129 (621)
                      |-+||+|+.++|..+++. ++.  ++...+.++.+-.   ..|.  .++ +-.+.+.++|++..+... ....++.++|-
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~--l~~-~~i~~~~~~l~~f~~~~~~~~v~~i~~vaT   78 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNM--LSE-EAMTRGLNCLSLFAERLQGFSPASVCIVGT   78 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCC--BCH-HHHHHHHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccCC--cCH-HHHHHHHHHHHHHHHHHHhcCcceehhhHH
Confidence            568999999999999994 443  4444444444322   2232  222 233444555555544321 23457777776


Q ss_pred             cC
Q 007010          130 AA  131 (621)
Q Consensus       130 s~  131 (621)
                      ++
T Consensus        79 sA   80 (124)
T d1u6za2          79 HT   80 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=86.47  E-value=1.8  Score=38.35  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=45.0

Q ss_pred             CCeEEEEecCccceeeEEEc--CCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010           54 RSVFLGVDVGTGSARAGLFD--ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (621)
Q Consensus        54 ~~~~lgIDiGTtsiKa~l~d--~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (621)
                      |+|+.|||||-+++-++|-+  .+|++-...+--.++..-.| -.++.    ..+..+|+.++++.+...++|.-|-+
T Consensus         1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~TTGiKG-T~~Ni----~Gv~~aL~~al~k~g~~~~d~~lIri   73 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKG-TLRNV----FGIQEALALVARGAGIAVSDISLIRI   73 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTT-STTHH----HHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred             CceEEEEecCcchhhhheeeecCCCcEEEEeccccccccccc-cHHHH----HHHHHHHHHHHHHcCCCHHHhheeee
Confidence            57999999999999999987  35554433333222222112 12333    45566677777777777777776666

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.75  Score=39.66  Aligned_cols=68  Identities=15%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-------CCceeecc-CCCchhHHHHHHHH
Q 007010          492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-------GCPIILPR-ENESVLLGAAILGA  560 (621)
Q Consensus       492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-------g~pV~~~~-~~e~~alGAA~lA~  560 (621)
                      .+++-.+..+...+-.+... ..++.|++.|+.+..+.+.+.+-..+       ..+|.... ..+++++|||++|.
T Consensus        93 ~i~~~~~~~la~~l~~l~~~-ldP~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2          93 QLIHRSARTLARLIADIKAT-TDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQ  168 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhe-ECCCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcHHHHHHHHHHC
Confidence            45555555555544443321 36788998888776655554443332       23455544 35677999999985

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=1.8  Score=36.58  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             CCcCEEEEecCCCCCHHHHHHHHHhhCC---ceeeccCCC-chhHHHHHHH
Q 007010          513 HKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENE-SVLLGAAILG  559 (621)
Q Consensus       513 ~~~~~I~~~GGga~s~~w~Qi~Advlg~---pV~~~~~~e-~~alGAA~lA  559 (621)
                      .+++.|+++||||+  ++...+...++.   .+.++++++ +.|.|..+++
T Consensus       114 ~~~~~iil~GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g  162 (163)
T d2zgya2         114 SGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG  162 (163)
T ss_dssp             CCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred             cccceEEEECchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence            46788999999984  778888888875   366666554 6688877654

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.07  E-value=1.1  Score=37.07  Aligned_cols=70  Identities=17%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             EEEEecCccceeeEEEcCC-CC--EEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHH---HHHcCCCCCCEEEE
Q 007010           57 FLGVDVGTGSARAGLFDES-GK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSA---CSLANVDGEEVKGV  127 (621)
Q Consensus        57 ~lgIDiGTtsiKa~l~d~~-g~--vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~---~~~~~~~~~~I~aI  127 (621)
                      +-.||+|+.++|..+++.+ ++  ++...+.+..+-.   ..|.  .+++. .+.+.+++++.   +++.+  ..++.++
T Consensus         5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g~--ls~~~-i~~~~~~l~~f~~~~~~~~--v~~~~~v   79 (126)
T d1t6ca1           5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGR--LQEDR-IEETIQVLKEYKKLIDEFK--VERVKAV   79 (126)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSS--CCHHH-HHHHHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccCC--CCHHH-HHHHHHHHHHHHHHHHhcC--ccceEEe
Confidence            6789999999999999954 33  3344444443211   1122  22222 23333444433   34433  4677777


Q ss_pred             EEcC
Q 007010          128 GFAA  131 (621)
Q Consensus       128 gis~  131 (621)
                      |-++
T Consensus        80 aTsA   83 (126)
T d1t6ca1          80 ATEA   83 (126)
T ss_dssp             ECHH
T ss_pred             hhHH
Confidence            7644

>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.38  E-value=1.7  Score=38.45  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             CeEEEEecCccceeeEEEc-CCCCEEEEEEee
Q 007010           55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSP   85 (621)
Q Consensus        55 ~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~   85 (621)
                      +.+|.|..|+||+|..||| .+.+++.+....
T Consensus         2 plILviN~GSSSlK~~lf~~~~~~~l~~g~~e   33 (189)
T d2e1za1           2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIAD   33 (189)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CEEEEEcCCchhheEEEEeCCCCcEEEEeeee
Confidence            5789999999999999999 466777665543