Citrus Sinensis ID: 007028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MMMSFDEMGFCGDMNFFSAPLGDADMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERLPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFENNSSGSNNNFSLMFESPFDLGSFDYKEDFQAAGVDTMPKHDSSVWF
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccc
cccHHHHccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHccEcccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHcccccccccccccccHHccccccHHHcccccccccccccccEEEcccccccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccEEEcccccccccccccHcccccccccccccccccc
mmmsfdemgfcgdmnffsaplgdadmavqpsepeatveddytdeemdVDELERRMWKDKMRLKRLkeqsrgkegidMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGfvygiipekgkpvtgasdnlREWWKDKvrfdrngpaaiakyqadnsvpgkneginaigptphtlqelQDTTLGSLLSALMqhcdppqrrfplekgvsppwwptgkeewwpqlglpkdqgappykkphdlkkawKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALArelypesctvlsssagsgslvindcneydvegaedepnfdvqeckpqnlissslGMERmrerlpnqqppyaikgevvsnfdfvrkrkpsndlsmkmdqhiytceylqcpysdprlgyrdrtsrdnhqltcpyksgasefggsdfhvnevkpvvfpqtfaqskpagptfnsvqpsfdisglgvpedGQKMISELMSIYdnniqgnrnvnpgnnavvtegqntlqpraqhqqeyyhgqgavmdgnlfegsnmhennhlmftreenqfdrfkimnspfennssgsnnnfslmfespfdlgsfdykedfqaagvdtmpkhdssvwf
MMMSFDEMGFCGDMNFFSAPLGDADMAVQPSepeatveddytdeemdvDELErrmwkdkmrlkrlkeqsrgkegidmakqrqsqeqarrKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAkyqadnsvpgknEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTVLSssagsgslvINDCNEYDVEGAedepnfdvqeckpqNLISSSLGMERMRERlpnqqppyaikgevvsnfdfvrkrkpsndlsmkMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFENNSSGSNNNFSLMFESPFDLGSFDYKEDFQAAGvdtmpkhdssvwf
MMMSFDEMGFCGDMNFFSAPLGDADMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTvlsssagsgslvINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERLPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMnspfennssgsnnnfsLMFESPFDLGSFDYKEDFQAAGVDTMPKHDSSVWF
********GFCGDMNFFS*******************************************************************************GILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKY*****************************TLGSLLSALMQHC********L*KGVSPPWWPTGKEEWWPQLGL************HDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDV*****************************************IKGEVVSNFDFV************MDQHIYTCEYLQCPYSDPRLGYR*********LTCPY******FGGSDFHVNEVKPVVFPQTF**********************************LMSIYD**********************************Y****AVM***L*************************************************FDLGSFDY*********************
***SFDEMGFCGDMNFFSAPLG*************************VDELERRMWKD*****************************************LKYMLKMMEVCKAQGFVYGIIPEKGKP****SDNLREWWKDKVRFDRNGPAAIAKYQ*********************LQELQDTTLGSLLSALMQHCDPPQRR*PL*KGVSPPWWPTGKEEWWPQLG************PHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCL***MTAKESATWLAIINQEEA***********************************************************************************************************************RDRTSRDNHQLTC**********************************************ISGLGVPEDGQKMISELMSIYDNNIQ*******************************************************************IMN*P*********NNFSLMFESPFDLGSFDYKEDF**************VWF
MMMSFDEMGFCGDMNFFSAPLGDADMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMRLKRL*****************************AQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERLPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFENNSSGSNNNFSLMFESPFDLGSFDYKEDFQAAGVDT**********
**********CGDM*************************DYTDEEMDVDELERRMWKDKMRLKRLKEQS***********************SRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPG*******IGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTV**************CNEYDVEGAE**************L*S***GM*RMRERLPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFENNSSGSNNNFSLMFESPFDLGSFDYKEDFQAAGVDTMPKHDS**WF
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MMMSFDEMGFCGDMNFFSAPLGDADMAVQPSEPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERLPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTSRDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFENNSSGSNNNFSLMFESPFDLGSFDYKEDFQAAGVDTMPKHDSSVWF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
O24606628 Protein ETHYLENE INSENSIT yes no 0.962 0.952 0.624 0.0
Q9SLH0584 ETHYLENE INSENSITIVE 3-li no no 0.904 0.962 0.595 0.0
O23116567 ETHYLENE INSENSITIVE 3-li no no 0.510 0.559 0.587 1e-107
O23115518 ETHYLENE INSENSITIVE 3-li no no 0.592 0.710 0.504 1e-100
Q9LX16471 Putative ETHYLENE INSENSI no no 0.434 0.573 0.577 5e-91
Q9FJQ5557 ETHYLENE INSENSITIVE 3-li no no 0.645 0.719 0.429 4e-90
>sp|O24606|EIN3_ARATH Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1 Back     alignment and function desciption
 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/649 (62%), Positives = 478/649 (73%), Gaps = 51/649 (7%)

Query: 3   MSFDEMGFCGDMNFFSA-PLGDADMAVQP-SEPEATVEDDYTDEEMDVDELERRMWKDKM 60
           M F+EMG CG+M+FFS+  LG+ D    P +EP++ VEDDYTD+E+DVDELERRMW+DKM
Sbjct: 1   MMFNEMGMCGNMDFFSSGSLGEVDFCPVPQAEPDSIVEDDYTDDEIDVDELERRMWRDKM 60

Query: 61  RLKRLKEQSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII 120
           RLKRLKEQ +GKEG+D AKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII
Sbjct: 61  RLKRLKEQDKGKEGVDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII 120

Query: 121 PEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQE 180
           PE GKPVTGASDNLREWWKDKVRFDRNGPAAI KYQA+N++PG +EG N IGPTPHTLQE
Sbjct: 121 PENGKPVTGASDNLREWWKDKVRFDRNGPAAITKYQAENNIPGIHEGNNPIGPTPHTLQE 180

Query: 181 LQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKP 240
           LQDTTLGSLLSALMQHCDPPQRRFPLEKGV PPWWP GKE+WWPQLGLPKDQG  PYKKP
Sbjct: 181 LQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGKEDWWPQLGLPKDQGPAPYKKP 240

Query: 241 HDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALAR 300
           HDLKKAWKVGVLTAVIKHM PDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEE+LAR
Sbjct: 241 HDLKKAWKVGVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLAR 300

Query: 301 ELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLI-SSSLGMERMR 359
           ELYPESC  LS S GS SL++NDC++YDVEG E E +++V+E KP+ ++ SS+ GM    
Sbjct: 301 ELYPESCPPLSLSGGSCSLLMNDCSQYDVEGFEKESHYEVEELKPEKVMNSSNFGMVAKM 360

Query: 360 ERLPNQQPPYAIKGEV-VSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRD 418
              P       +K EV   N +F+RKRKP+ DL+  MD+ ++TCE L C +S+   G+ D
Sbjct: 361 HDFP-------VKEEVPAGNSEFMRKRKPNRDLNTIMDRTVFTCENLGCAHSEISRGFLD 413

Query: 419 RTSRDNHQLTCPYKSGASEFGG--SDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDI 476
           R SRDNHQL CP++     +G   S FHVNEVKPVV    F Q +P     NSV    D+
Sbjct: 414 RNSRDNHQLACPHRDSRLPYGAAPSRFHVNEVKPVV---GFPQPRPV----NSVAQPIDL 466

Query: 477 SGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNT--LQPRAQHQQEYYHG 534
           +G+ VPEDGQKMISELMS+YD N+Q N+       ++V E Q+   LQP   + QE+   
Sbjct: 467 TGI-VPEDGQKMISELMSMYDRNVQSNQ------TSMVMENQSVSLLQPTVHNHQEHLQF 519

Query: 535 QGAVMDGNLFE--------GSNMHENNHLMFTREENQFDRFKIMNSPF-------ENNSS 579
            G +++G+ FE         +N   NN   F    N  + FK   +          NN++
Sbjct: 520 PGNMVEGSFFEDLNIPNRANNNNSSNNQTFFQGNNNNNNVFKFDTADHNNFEAAHNNNNN 579

Query: 580 GSNNNFSLMFES-PFDLGSFDYKEDFQAAGV----DTM--PKHDSSVWF 621
            S N F L+F+S PFD+ SFDY++D    GV    D M   + D S+WF
Sbjct: 580 SSGNRFQLVFDSTPFDMASFDYRDDMSMPGVVGTMDGMQQKQQDVSIWF 628
Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SLH0|EIL1_ARATH ETHYLENE INSENSITIVE 3-like 1 protein OS=Arabidopsis thaliana GN=EIL1 PE=1 SV=1 Back     alignment and function description
>sp|O23116|EIL3_ARATH ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1 Back     alignment and function description
>sp|O23115|EIL2_ARATH ETHYLENE INSENSITIVE 3-like 2 protein OS=Arabidopsis thaliana GN=EIL2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX16|EIL4_ARATH Putative ETHYLENE INSENSITIVE 3-like 4 protein OS=Arabidopsis thaliana GN=EIL4 PE=3 SV=1 Back     alignment and function description
>sp|Q9FJQ5|EIL5_ARATH ETHYLENE INSENSITIVE 3-like 5 protein OS=Arabidopsis thaliana GN=EIL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
255578664617 ETHYLENE-INSENSITIVE3 protein, putative 0.985 0.991 0.775 0.0
224131746617 ethylene-insensitive 3b [Populus trichoc 0.990 0.996 0.760 0.0
224102883631 ethylene-insensitive 3a [Populus trichoc 0.988 0.973 0.747 0.0
356549557621 PREDICTED: protein ETHYLENE INSENSITIVE 0.991 0.991 0.732 0.0
449452725622 PREDICTED: protein ETHYLENE INSENSITIVE 0.993 0.991 0.744 0.0
449529347632 PREDICTED: protein ETHYLENE INSENSITIVE 0.995 0.977 0.735 0.0
388890587635 ethylene-insensitive 3 [Cucumis sativus] 0.995 0.973 0.731 0.0
356554294610 PREDICTED: protein ETHYLENE INSENSITIVE 0.972 0.990 0.699 0.0
356575060624 PREDICTED: protein ETHYLENE INSENSITIVE 0.987 0.982 0.717 0.0
15425733693 EIN3-like protein [Cucumis melo] 0.966 0.865 0.747 0.0
>gi|255578664|ref|XP_002530192.1| ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis] gi|223530285|gb|EEF32182.1| ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/624 (77%), Positives = 547/624 (87%), Gaps = 12/624 (1%)

Query: 2   MMSFDEMGFCGDMNFFSAPLGDADMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMR 61
           MM FDE+GFCGDM+FFS+ LG+ D+A Q +E E TVEDDY+DEE+DVDELERRMW+DKMR
Sbjct: 1   MMMFDEIGFCGDMDFFSSSLGE-DVAAQQAEHEPTVEDDYSDEEIDVDELERRMWRDKMR 59

Query: 62  LKRLKEQSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIP 121
           LK+LKEQ++ KEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIP
Sbjct: 60  LKKLKEQNKSKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIP 119

Query: 122 EKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQEL 181
           EKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNS+PGKNEG N+IGPTPHTLQEL
Sbjct: 120 EKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSIPGKNEGCNSIGPTPHTLQEL 179

Query: 182 QDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPH 241
           QDTTLGSLLSALMQHCDPPQRRFPLEKGV PPWWP G EEWWPQLGLPKDQG PPYKKPH
Sbjct: 180 QDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGNEEWWPQLGLPKDQGPPPYKKPH 239

Query: 242 DLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE 301
           DLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE
Sbjct: 240 DLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE 299

Query: 302 LYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRER 361
           LYP+SC  L SSAGSGSL+I+DC+EYDVEG EDEPNFDVQECKP++L SS LGMERMRER
Sbjct: 300 LYPDSCPPL-SSAGSGSLIIHDCSEYDVEGIEDEPNFDVQECKPEHLNSSGLGMERMRER 358

Query: 362 LPNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRDRTS 421
           LP +QP Y IKGE++S  DF+RKRKPS+D++M +DQ +YTCE++QCPYS  RLG+ DRTS
Sbjct: 359 LPLRQPSYPIKGELISTVDFIRKRKPSSDINMMVDQKVYTCEFVQCPYSQLRLGFHDRTS 418

Query: 422 RDNHQLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGV 481
           RDNHQLTCPY+S + EFGGS+FHVNEVKPV+FPQ  AQ KPA    N+  P+FD+S  GV
Sbjct: 419 RDNHQLTCPYRSSSLEFGGSNFHVNEVKPVIFPQPCAQPKPAASMVNNAPPAFDLS--GV 476

Query: 482 PEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQE-YYHGQGAVMD 540
           PEDGQKMISELMSIYD N+QGN+N   GNN  VTEG N  QP+  HQQ+ Y+  Q  VMD
Sbjct: 477 PEDGQKMISELMSIYDTNVQGNKNS--GNNQ-VTEGHNLFQPKIHHQQDNYFRSQSNVMD 533

Query: 541 GNLFEGSNMHENNHLMFTREENQFDRFKIMNSPFE--NNSSGSNNNFSLMFESPFDLGSF 598
            N+FE SN+H NNH MF+++ +QFDRFK +NSPFE  N  + +N++F+LMF SPFDL SF
Sbjct: 534 ANIFEDSNIH-NNHQMFSQDGSQFDRFKALNSPFESSNQHNNNNSSFNLMFGSPFDLSSF 592

Query: 599 DYKEDFQAAGVDTMPK-HDSSVWF 621
           DYKED Q   ++++PK  D+++WF
Sbjct: 593 DYKEDLQGLAMESLPKQQDAAIWF 616

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131746|ref|XP_002328098.1| ethylene-insensitive 3b [Populus trichocarpa] gi|222837613|gb|EEE75978.1| ethylene-insensitive 3b [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102883|ref|XP_002312841.1| ethylene-insensitive 3a [Populus trichocarpa] gi|222849249|gb|EEE86796.1| ethylene-insensitive 3a [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549557|ref|XP_003543159.1| PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449452725|ref|XP_004144109.1| PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529347|ref|XP_004171661.1| PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388890587|gb|AFK80347.1| ethylene-insensitive 3 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554294|ref|XP_003545483.1| PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356575060|ref|XP_003555660.1| PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|15425733|dbj|BAB64344.1| EIN3-like protein [Cucumis melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2091906628 EIN3 "ETHYLENE-INSENSITIVE3" [ 0.966 0.955 0.605 4.7e-199
TAIR|locus:2059247584 EIL1 "ETHYLENE-INSENSITIVE3-li 0.772 0.821 0.675 1.2e-184
TAIR|locus:2027754567 EIL3 "ETHYLENE-INSENSITIVE3-li 0.510 0.559 0.584 2.3e-101
TAIR|locus:2178988518 EIL2 "ETHYLENE-INSENSITIVE3-li 0.431 0.517 0.591 2e-100
TAIR|locus:2184088471 AT5G10120 [Arabidopsis thalian 0.431 0.569 0.581 6.1e-95
TAIR|locus:2171815557 AT5G65100 [Arabidopsis thalian 0.681 0.759 0.421 3e-85
TAIR|locus:2091906 EIN3 "ETHYLENE-INSENSITIVE3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
 Identities = 392/647 (60%), Positives = 459/647 (70%)

Query:     3 MSFDEMGFCGDMNFFSA-PLGDADMAVQP-SEPEATVEDDYTDEEMDVDELERRMWKDKM 60
             M F+EMG CG+M+FFS+  LG+ D    P +EP++ VEDDYTD+E+DVDELERRMW+DKM
Sbjct:     1 MMFNEMGMCGNMDFFSSGSLGEVDFCPVPQAEPDSIVEDDYTDDEIDVDELERRMWRDKM 60

Query:    61 RLKRLKEQSRGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII 120
             RLKRLKEQ +GKEG+D AKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII
Sbjct:    61 RLKRLKEQDKGKEGVDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGII 120

Query:   121 PEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQE 180
             PE GKPVTGASDNLREWWKDKVRFDRNGPAAI KYQA+N++PG +EG N IGPTPHTLQE
Sbjct:   121 PENGKPVTGASDNLREWWKDKVRFDRNGPAAITKYQAENNIPGIHEGNNPIGPTPHTLQE 180

Query:   181 LQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKP 240
             LQDTTLGSLLSALMQHCDPPQRRFPLEKGV PPWWP GKE+WWPQLGLPKDQG  PYKKP
Sbjct:   181 LQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGKEDWWPQLGLPKDQGPAPYKKP 240

Query:   241 HDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALAR 300
             HDLKKAWKVGVLTAVIKHM PDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEE+LAR
Sbjct:   241 HDLKKAWKVGVLTAVIKHMFPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLAR 300

Query:   301 ELYPESCTXXXXXXXXXXXXINDCNEYDVEGAEDEPNFDVQECKPQNLISSS-LGMERMR 359
             ELYPESC             +NDC++YDVEG E E +++V+E KP+ +++SS  GM    
Sbjct:   301 ELYPESCPPLSLSGGSCSLLMNDCSQYDVEGFEKESHYEVEELKPEKVMNSSNFGMVAKM 360

Query:   360 ERLPNQQPPYAIKGEV-VSNFDFVRKRKPSNDLSMKMDQHIYTCEYLQCPYSDPRLGYRD 418
                P       +K EV   N +F+RKRKP+ DL+  MD+ ++TCE L C +S+   G+ D
Sbjct:   361 HDFP-------VKEEVPAGNSEFMRKRKPNRDLNTIMDRTVFTCENLGCAHSEISRGFLD 413

Query:   419 RTSRDNHQLTCPYKSGASEFGG--SDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDI 476
             R SRDNHQL CP++     +G   S FHVNEVKPVV    F Q +P     NSV    D+
Sbjct:   414 RNSRDNHQLACPHRDSRLPYGAAPSRFHVNEVKPVV---GFPQPRPV----NSVAQPIDL 466

Query:   477 SGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNTLQPRAQHQQEYYHGQG 536
             +G+ VPEDGQKMISELMS+YD N+Q N+      N  V+     LQP   + QE+    G
Sbjct:   467 TGI-VPEDGQKMISELMSMYDRNVQSNQTSMVMENQSVS----LLQPTVHNHQEHLQFPG 521

Query:   537 AVMDGNLFE--------GSNMHENNHLMFTREENQFDRFKI-------MXXXXXXXXXXX 581
              +++G+ FE         +N   NN   F    N  + FK                    
Sbjct:   522 NMVEGSFFEDLNIPNRANNNNSSNNQTFFQGNNNNNNVFKFDTADHNNFEAAHNNNNNSS 581

Query:   582 XXXXXLMFES-PFDLGSFDYKEDFQAAGV-DTMP-----KHDSSVWF 621
                  L+F+S PFD+ SFDY++D    GV  TM      + D S+WF
Sbjct:   582 GNRFQLVFDSTPFDMASFDYRDDMSMPGVVGTMDGMQQKQQDVSIWF 628
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS
GO:0009873 "ethylene mediated signaling pathway" evidence=IMP;RCA;TAS
GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0003677 "DNA binding" evidence=IPI
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IGI
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0000303 "response to superoxide" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009639 "response to red or far red light" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009751 "response to salicylic acid stimulus" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2059247 EIL1 "ETHYLENE-INSENSITIVE3-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027754 EIL3 "ETHYLENE-INSENSITIVE3-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178988 EIL2 "ETHYLENE-INSENSITIVE3-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184088 AT5G10120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171815 AT5G65100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O24606EIN3_ARATHNo assigned EC number0.62400.96290.9522yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
EIN3B
ethylene-insensitive 3b (617 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
PLN03109599 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 pr 1e-164
pfam04873332 pfam04873, EIN3, Ethylene insensitive 3 1e-111
>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein; Provisional Back     alignment and domain information 
 Score =  482 bits (1241), Expect = e-164
 Identities = 210/374 (56%), Positives = 268/374 (71%), Gaps = 16/374 (4%)

Query: 12  GDMNFFSAPLGDA-DMAVQPSEPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKE-QS 69
           G +   +A LGD+ D  V     +   E+D +DEE++ ++LERRMWKD+++LKR+KE Q 
Sbjct: 2   GHLAILAAELGDSSDFEVDGIRCDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQK 61

Query: 70  RGKEG-IDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVT 128
           + ++  ++ +K ++  +QARRKKMSRAQDGILKYMLK+MEVCKA+GFVYGIIPEKGKPV+
Sbjct: 62  KLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVS 121

Query: 129 GASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGS 188
           GASDN+R WWK+KV+FD+NGPAAIAKY+A+    G+ E       + H+LQ+LQD TLGS
Sbjct: 122 GASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGNN--SQHSLQDLQDATLGS 179

Query: 189 LLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWK 248
           LLS+LMQHCDPPQR++PLEKGV PPWWP+G E+WW +LGLPK Q +PPYKKPHDLKK WK
Sbjct: 180 LLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQ-SPPYKKPHDLKKMWK 238

Query: 249 VGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCT 308
           VGVLTAVIKHMSPD  KIR+ VRQSKCLQDKMTAKES  WL ++N+EE+L R+  P S  
Sbjct: 239 VGVLTAVIKHMSPDFDKIRRHVRQSKCLQDKMTAKESLIWLGVLNREESLIRQ--PSSDN 296

Query: 309 VLS--------SSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRE 360
             S                 I+  ++YDV+G ED P     +   +NL   +   ER R+
Sbjct: 297 GTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPGSVSSKDDRRNLQPVAQEPERARD 356

Query: 361 RLPNQQPPYAIKGE 374
             PNQ  P   K +
Sbjct: 357 DAPNQVVPDKEKTK 370

Length = 599
>gnl|CDD|218302 pfam04873, EIN3, Ethylene insensitive 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
PLN03109599 ETHYLENE-INSENSITIVE3-like3 protein; Provisional 100.0
PF04873354 EIN3: Ethylene insensitive 3; InterPro: IPR006957 100.0
PF11001126 DUF2841: Protein of unknown function (DUF2841); In 97.01
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-148  Score=1165.03  Aligned_cols=303  Identities=63%  Similarity=1.099  Sum_probs=284.3

Q ss_pred             CCCcCCCCCCCcccCCHHHHHHhhhhhhHHHHHHhhhhcCCcccc--hhhccccHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 007028           32 EPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGID--MAKQRQSQEQARRKKMSRAQDGILKYMLKMMEV  109 (621)
Q Consensus        32 ~~~~~~e~~~sdeei~~~eLe~rmwkD~~~lkrlke~~~~~~~~~--~~k~~~~~eq~rrKkMsRAQdgiLkyMlKmMEv  109 (621)
                      ..++++|+|+||||||+||||||||||||+||||||+++..+..+  ..|+++++||||||||+||||||||||||||||
T Consensus        23 ~c~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~  102 (599)
T PLN03109         23 RCDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEV  102 (599)
T ss_pred             ccCCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999998855444  668899999999999999999999999999999


Q ss_pred             HhhccceeeeccCCCccccCCCchhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCCCCCCcchhhhcchhhhhhH
Q 007028          110 CKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSL  189 (621)
Q Consensus       110 C~aqGFVYGIipekGkPvsGaSdnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsl  189 (621)
                      ||||||||||||||||||||||||||+|||||||||||||||||||++||++++.++....  +++|+|+||||||||||
T Consensus       103 c~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgsl  180 (599)
T PLN03109        103 CKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSL  180 (599)
T ss_pred             HhhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988765443  89999999999999999


Q ss_pred             HHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHH
Q 007028          190 LSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKL  269 (621)
Q Consensus       190 lSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLtAVIKHmsPd~~kir~l  269 (621)
                      ||||||||+|||||||||||+||||||||+|+||+++|+|++++ |||||||||||||||||||||||||||||+|||+|
T Consensus       181 lsalmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~  259 (599)
T PLN03109        181 LSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRH  259 (599)
T ss_pred             HHHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHH
Confidence            99999999999999999999999999999999999999999865 99999999999999999999999999999999999


Q ss_pred             HhhhcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCc------ccCCCCCCCCccccCCCCccccCCCCCCC
Q 007028          270 VRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCT------VLSSSAGSGSLVINDCNEYDVEGAEDEPN  337 (621)
Q Consensus       270 VrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~eYDVdg~~~~~~  337 (621)
                      ||||||||||||||||+||++||+|||+|+|+...++..      |.++.++....++|+++||||||+||...
T Consensus       260 vr~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~g  333 (599)
T PLN03109        260 VRQSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPG  333 (599)
T ss_pred             HHhchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCC
Confidence            999999999999999999999999999999998777642      44556677788899999999999998764

>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses Back     alignment and domain information
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
1wij_A140 Solution Structure Of The Dna-Binding Domain Of Eth 7e-55
>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene- Insensitive3-Like3 Length = 140 Back     alignment and structure 
Iteration: 1

 Score =  211 bits (538), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 113/130 (86%), Gaps = 1/130 (0%)
Query: 177 TLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPP 236
            LQ+LQD TLGSLLS+LMQHCDPPQR++PLEKG  PPWWPTG EEWW +LGLPK Q +PP
Sbjct: 11  VLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQ-SPP 69
Query: 237 YKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEE 296
           Y+KPHDLKK WKVGVLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA WLA++NQEE
Sbjct: 70  YRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEE 129
Query: 297 ALARELYPES 306
           +L ++  P S
Sbjct: 130 SLIQQSGPSS 139

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
1wij_A140 Ethylene-insensitive3-like 3 protein; DNA-binding 9e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1 Length = 140 Back     alignment and structure
 Score =  245 bits (625), Expect = 9e-79
 Identities = 100/140 (71%), Positives = 115/140 (82%), Gaps = 1/140 (0%)

Query: 167 GINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQL 226
           G +    +   LQ+LQD TLGSLLS+LMQHCDPPQR++PLEKG  PPWWPTG EEWW +L
Sbjct: 1   GSSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKL 60

Query: 227 GLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESA 286
           GLPK Q  PPY+KPHDLKK WKVGVLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA
Sbjct: 61  GLPKSQS-PPYRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESA 119

Query: 287 TWLAIINQEEALARELYPES 306
            WLA++NQEE+L ++  P S
Sbjct: 120 IWLAVLNQEESLIQQSGPSS 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
1wij_A140 Ethylene-insensitive3-like 3 protein; DNA-binding 100.0
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1 Back     alignment and structure
Probab=100.00  E-value=3.3e-81  Score=566.53  Aligned_cols=138  Identities=72%  Similarity=1.246  Sum_probs=126.5

Q ss_pred             CCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhh
Q 007028          168 INAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAW  247 (621)
Q Consensus       168 ~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKaw  247 (621)
                      +++.++++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|++++|+ |||||||||||||
T Consensus         2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw   80 (140)
T 1wij_A            2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW   80 (140)
T ss_dssp             ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred             CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence            566789999999999999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             hhhhhhhhhhccCcCHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007028          248 KVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPES  306 (621)
Q Consensus       248 KV~VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~~~~~~  306 (621)
                      ||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++|++||++
T Consensus        81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~  139 (140)
T 1wij_A           81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS  139 (140)
T ss_dssp             HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999875

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 621
d1wija_127 a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like 2e-83
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: DNA-binding domain of EIN3-like
family: DNA-binding domain of EIN3-like
domain: Ethylene insensitive 3 (EIN3)-like protein 3, EIL3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  255 bits (653), Expect = 2e-83
 Identities = 97/126 (76%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 176 HTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAP 235
             LQ+LQD TLGSLLS+LMQHCDPPQR++PLEKG  PPWWPTG EEWW +LGLPK Q  P
Sbjct: 3   FVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-P 61

Query: 236 PYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQE 295
           PY+KPHDLKK WKVGVLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA WLA++NQE
Sbjct: 62  PYRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQE 121

Query: 296 EALARE 301
           E+L ++
Sbjct: 122 ESLIQQ 127

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
d1wija_127 Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 100.0
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: DNA-binding domain of EIN3-like
family: DNA-binding domain of EIN3-like
domain: Ethylene insensitive 3 (EIN3)-like protein 3, EIL3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.7e-79  Score=542.42  Aligned_cols=127  Identities=76%  Similarity=1.352  Sum_probs=124.1

Q ss_pred             CcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhh
Q 007028          174 TPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLT  253 (621)
Q Consensus       174 ~~h~L~~LqDtTLgsllSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLt  253 (621)
                      +.|.|+||||||||||||||||||+|||||||||||+||||||||+|+||++||++++++ |||||||||||||||+|||
T Consensus         1 ~~~~L~~LqD~TLgsllsaLmqhC~PPQR~~Plekg~pPPWWPtG~E~WW~~lg~~~~~~-PPYkkPhdLkKawKv~vL~   79 (127)
T d1wija_           1 SQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMWKVGVLT   79 (127)
T ss_dssp             CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCChHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999999999999999998 7999999999999999999


Q ss_pred             hhhhccCcCHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 007028          254 AVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE  301 (621)
Q Consensus       254 AVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~  301 (621)
                      ||||||||||+|||+|||||||||||||||||+||++||+|||+|+|+
T Consensus        80 aVIKHmsPd~~kir~lVr~sk~lqdkmTakEs~~W~~vl~~Ee~l~~~  127 (127)
T d1wija_          80 AVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQ  127 (127)
T ss_dssp             HHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC
T ss_pred             HHHHHhCCcHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999999999999999999999998763