Citrus Sinensis ID: 007041

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
MSMFGRDPWGGPLEINAADSATDDDRSRNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTIFSAVPPMFPTPPPPPAPWKP
cccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHcccccccccccccEEEEccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHcccccccccccccccEEcccccccHHHHHHHHHHHHHHHHcHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
ccccccccccccEEEccccccccccccccHHHHHHHHHHccccHHHHHHHccccHHHcccEEEccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcEcEcccccccccccccEcccccccccHHHcccccccEcccccccEEHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHcccHHcccccccccccccEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHcccccccccEcccccccccccccHHHHccccccEEcccccHHHHHHHccccccccccEccccccccccccccccHHHHEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
msmfgrdpwggpleinaadsatdddrsrnlqdfdraalsrpldetqqswllgptekkkkkyvdlgcIIVSRKIFVWTVGTLLVSALLAGFITLIVKtvprhhhsharpdnyTLALHKALMFFNaqrsgklpkhnnvswrgnsclkdgksasssiskdlvggfydagdaikfnfpqsftiTMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQvgagdtsggsttpndhycwmrpedidydrpvtecsscSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAkfynstsywdefiWGGAWLYYAtgnssylqlattpglgkhagVFWGILDNSVLSWDNKLAGAALLLSRLRlflspgypyeeMLRTFHNqtsitmcsylptfttwnrtrgliqlnhgnpqplqYVVNAAFLATLFSDYldaadtpgwycgpnffstdTLREFAKTQIDYIlgknprkmsyivgfgnhypkhvhhrgasipknkirynckggwklrdsskpnpntlvgalvagpdkhdgfrdvrtnynyteptlagNAGLVAALVALSgeksrttidkntifsavppmfptpppppapwkp
msmfgrdpwggpLEINAadsatdddrSRNLQDFDRAalsrpldetqqswllgptekkkkkyVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRsgklpkhnnvswrGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGdtsggsttpndhYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHvhhrgasipknkIRYNCKGGwklrdsskpnPNTLVGALvagpdkhdgfRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTIfsavppmfptpppppapwkp
MSMFGRDPWGGPLEINaadsatdddrsrNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSCSDlaaemaaslaaasIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKlagaalllsrlrlflsPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTlagnaglvaalvalSGEKSRTTIDKNTIFSAVppmfptpppppapwkp
*************************************************************VDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQ********************************LVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQV*************DHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLR********TLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGE*****I****I********************
******D*WGGPLE******************F***A******ETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGE*******************************
********WGGPLEINAAD********RNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTV********RPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCL*********ISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVG********TTPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSR************AAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTIFSAVPPMFPTP*********
**************************SRNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTIFSAVPPMF************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSMFGRDPWGGPLEINAADSATDDDRSRNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTIFSAVPPMFPTPPPPPAPWKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query620 2.2.26 [Sep-21-2011]
Q38890621 Endoglucanase 25 OS=Arabi yes no 0.970 0.969 0.801 0.0
P0C1U4619 Endoglucanase 9 OS=Oryza yes no 0.966 0.967 0.75 0.0
Q9STW8620 Endoglucanase 21 OS=Arabi no no 0.974 0.974 0.718 0.0
Q84R49620 Endoglucanase 10 OS=Oryza no no 0.987 0.987 0.720 0.0
Q7XUK4623 Endoglucanase 12 OS=Oryza no no 0.988 0.983 0.585 0.0
O04478623 Endoglucanase 7 OS=Arabid no no 0.977 0.972 0.547 0.0
Q8L7I0 626 Endoglucanase 19 OS=Arabi no no 0.761 0.753 0.404 2e-89
Q9SRX3501 Endoglucanase 1 OS=Arabid no no 0.735 0.910 0.430 3e-88
Q9FXI9515 Endoglucanase 2 OS=Arabid no no 0.732 0.881 0.413 4e-88
Q42059 620 Endoglucanase 6 OS=Arabid no no 0.758 0.758 0.401 8e-88
>sp|Q38890|GUN25_ARATH Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1 Back     alignment and function desciption
 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/605 (80%), Positives = 535/605 (88%), Gaps = 3/605 (0%)

Query: 3   MFGRDPWGGPLEINAADSATDDDRSRNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYV 62
           M+GRDPWGGPLEIN ADSATDDDRSRNL D DRAALSRPLDETQQSWLLGPTE+KKKKYV
Sbjct: 1   MYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSRPLDETQQSWLLGPTEQKKKKYV 60

Query: 63  DLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFF 122
           DLGCIIVSRKIFVWTVGTL+ +ALLAGFITLIVKTVPRHH     PDNYT+ALHKAL FF
Sbjct: 61  DLGCIIVSRKIFVWTVGTLVAAALLAGFITLIVKTVPRHHPKTPPPDNYTIALHKALKFF 120

Query: 123 NAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITML 182
           NAQ+SGKLPKHNNVSWRGNS L+DGK  + S  KDLVGG+YDAGDAIKFNFP ++ +TML
Sbjct: 121 NAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVGGYYDAGDAIKFNFPMAYAMTML 180

Query: 183 SWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTT 242
           SWSVIEYSAKYEAAGEL HVKE+IKWGTDYFLKTFN +ADSI  +V+QVG+G+T  G+T 
Sbjct: 181 SWSVIEYSAKYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTD 240

Query: 243 PNDHYCWMRPEDIDYDRPVTECS-SCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKT 301
           PNDHYCWMRPED+DY RPVT C+  CSDLAAEMAA+LA+ASIVFKDNK YS+KLVHGAK 
Sbjct: 241 PNDHYCWMRPEDMDYKRPVTTCNGGCSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKV 300

Query: 302 LFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKH 361
           ++QF R +R RYSAG+AE++KFYNS+ YWDEFIWGGAW+YYATGN +YL L T P + KH
Sbjct: 301 VYQFGRTRRGRYSAGTAESSKFYNSSMYWDEFIWGGAWMYYATGNVTYLNLITQPTMAKH 360

Query: 362 AGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPT 421
           AG FWG     V SWDNKLAGA LLLSRLRLFLSPGYPYEE+LRTFHNQTSI MCSYLP 
Sbjct: 361 AGAFWGGPYYGVFSWDNKLAGAQLLLSRLRLFLSPGYPYEEILRTFHNQTSIVMCSYLPI 420

Query: 422 FTTWNRTR-GLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLR 480
           F  +NRT  GLI+LNHG PQPLQY VNAAFLATL+SDYLDAADTPGWYCGPNF+ST  LR
Sbjct: 421 FNKFNRTNGGLIELNHGAPQPLQYSVNAAFLATLYSDYLDAADTPGWYCGPNFYSTSVLR 480

Query: 481 EFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKP 540
           +FA++QIDYILGKNPRKMSY+VGFG  YP+HVHHRGASIPKNK++YNCKGGWK RDS KP
Sbjct: 481 DFARSQIDYILGKNPRKMSYVVGFGTKYPRHVHHRGASIPKNKVKYNCKGGWKWRDSKKP 540

Query: 541 NPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRT-TIDKNT 599
           NPNT+ GA+VAGPDK DG+RDVR NYNYTEPTLAGNAGLVAALVALSGE+  T  IDKNT
Sbjct: 541 NPNTIEGAMVAGPDKRDGYRDVRMNYNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNT 600

Query: 600 IFSAV 604
           IFSAV
Sbjct: 601 IFSAV 605
Required for cellulose microfibrils formation. Involved in cell wall assembly during cell elongation and cell plate maturation in cytokinesis. Required for secondary cell wall formation in the developing xylem. May cycle through different intracellular compartments, including plasma membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 4
>sp|P0C1U4|GUN9_ORYSJ Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1 Back     alignment and function description
>sp|Q9STW8|GUN21_ARATH Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1 Back     alignment and function description
>sp|Q84R49|GUN10_ORYSJ Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1 Back     alignment and function description
>sp|Q7XUK4|GUN12_ORYSJ Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2 Back     alignment and function description
>sp|O04478|GUN7_ARATH Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1 Back     alignment and function description
>sp|Q8L7I0|GUN19_ARATH Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11050 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRX3|GUN1_ARATH Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXI9|GUN2_ARATH Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g19940 PE=2 SV=1 Back     alignment and function description
>sp|Q42059|GUN6_ARATH Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
50346662619 Cel9A [Populus tremula x Populus tremulo 0.969 0.970 0.870 0.0
255556721621 endo-1,4-beta-glucanase, putative [Ricin 0.972 0.971 0.867 0.0
24475521621 endo-1,4-beta-D-glucanase [Pyrus communi 0.970 0.969 0.863 0.0
33324614619 endo-1,4-beta-glucanase [Gossypium hirsu 0.969 0.970 0.867 0.0
42765931619 endo-1,4-beta-glucanase [Populus tremulo 0.969 0.970 0.864 0.0
345103989619 endo-1,4-beta-glucanase [Gossypium gossy 0.969 0.970 0.867 0.0
345103977619 endo-1,4-beta-glucanase [Gossypium hirsu 0.969 0.970 0.865 0.0
225469870618 PREDICTED: endoglucanase 25 [Vitis vinif 0.969 0.972 0.875 0.0
224112813619 hypothetical protein POPTRDRAFT_675657 [ 0.969 0.970 0.867 0.0
32454474619 endo-1,4-beta-glucanase [Gossypium hirsu 0.969 0.970 0.865 0.0
>gi|50346662|gb|AAT75041.1| Cel9A [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/604 (87%), Positives = 560/604 (92%), Gaps = 3/604 (0%)

Query: 3   MFGRDPWGGPLEINAADSATDDDRSRNLQDFDRAALSRPLDETQQSWLLGPTE-KKKKKY 61
           M+GRDPWGGPLEINAADSATDDDRSRNL D DRAALSRPLDETQQSWLLGP E KKKKKY
Sbjct: 1   MYGRDPWGGPLEINAADSATDDDRSRNLNDLDRAALSRPLDETQQSWLLGPAEQKKKKKY 60

Query: 62  VDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMF 121
           VDLGCIIVSRKIFVWTVG+++ + LL G ITLIVKTVPRHHHSHA  DNYTLALHKALMF
Sbjct: 61  VDLGCIIVSRKIFVWTVGSIVAAGLLVGLITLIVKTVPRHHHSHAPADNYTLALHKALMF 120

Query: 122 FNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITM 181
           FN QRSGKLPKHNNVSWRG+SCL DGK    S  KDLVGG+YDAGDAIKF+FP SF++TM
Sbjct: 121 FNGQRSGKLPKHNNVSWRGSSCLSDGKGKQVSFYKDLVGGYYDAGDAIKFHFPASFSMTM 180

Query: 182 LSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGST 241
           LSWSVIEYSAKYEAAGELNHVKE+IKWG DYFLKTFN SAD+I R+VAQVG+GDTSGGST
Sbjct: 181 LSWSVIEYSAKYEAAGELNHVKELIKWGADYFLKTFNSSADTIDRIVAQVGSGDTSGGST 240

Query: 242 TPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAASLAAASIVFKDNKAYSQKLVHGAKT 301
           TPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAA+LA+ASIVFKDNKAYSQKLVHGAKT
Sbjct: 241 TPNDHYCWMRPEDIDYDRPVTECSSCSDLAAEMAAALASASIVFKDNKAYSQKLVHGAKT 300

Query: 302 LFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKH 361
           LF+F+R QR RYSAGS+EAA FYNSTSYWDEFIWGGAWLYYATGN+SYLQLAT PGL KH
Sbjct: 301 LFKFARDQRGRYSAGSSEAAIFYNSTSYWDEFIWGGAWLYYATGNNSYLQLATMPGLAKH 360

Query: 362 AGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPT 421
           AG FWG  D  VLSWDNKLAGA LLLSRLRLFLSPGYPYEE+L TFHNQTSI MCSYLP 
Sbjct: 361 AGAFWGGPDYGVLSWDNKLAGAQLLLSRLRLFLSPGYPYEEILSTFHNQTSIIMCSYLPI 420

Query: 422 FTTWNRTR-GLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLR 480
           FT +NRT+ GLI+LNHG PQPLQYVVNAAFLATLFSDYL+AADTPGWYCGPNF+STD LR
Sbjct: 421 FTKFNRTKGGLIELNHGRPQPLQYVVNAAFLATLFSDYLEAADTPGWYCGPNFYSTDVLR 480

Query: 481 EFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKP 540
           +FAKTQIDYILGKNPRKMSYIVGFGNHYPKH+HHRGASIPKNKIRYNCKGGWK RD+SKP
Sbjct: 481 DFAKTQIDYILGKNPRKMSYIVGFGNHYPKHLHHRGASIPKNKIRYNCKGGWKWRDTSKP 540

Query: 541 NPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEKSRTTIDKNTI 600
           NPNTLVGA+VAGPD+HDGF DVRTNYNYTEPT+AGNAGLVAALVALSG+K+ T IDKNTI
Sbjct: 541 NPNTLVGAMVAGPDRHDGFHDVRTNYNYTEPTIAGNAGLVAALVALSGDKT-TGIDKNTI 599

Query: 601 FSAV 604
           FSAV
Sbjct: 600 FSAV 603

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556721|ref|XP_002519394.1| endo-1,4-beta-glucanase, putative [Ricinus communis] gi|223541461|gb|EEF43011.1| endo-1,4-beta-glucanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|24475521|dbj|BAC22690.1| endo-1,4-beta-D-glucanase [Pyrus communis] Back     alignment and taxonomy information
>gi|33324614|gb|AAQ08018.1| endo-1,4-beta-glucanase [Gossypium hirsutum] gi|324984021|gb|ADY68793.1| membrane-anchored endo-1,4-beta-glucanase [Gossypium raimondii] gi|324984025|gb|ADY68795.1| membrane-anchored endo-1,4-beta-glucanase [Gossypium hirsutum] gi|345103947|gb|AEN70795.1| endo-1,4-beta-glucanase [Gossypium thurberi] gi|345103949|gb|AEN70796.1| endo-1,4-beta-glucanase [Gossypium laxum] gi|345103957|gb|AEN70800.1| endo-1,4-beta-glucanase [Gossypium mustelinum] gi|345103983|gb|AEN70813.1| endo-1,4-beta-glucanase [Gossypium davidsonii] gi|345103985|gb|AEN70814.1| endo-1,4-beta-glucanase [Gossypium klotzschianum] gi|345103987|gb|AEN70815.1| endo-1,4-beta-glucanase [Gossypium aridum] gi|345103991|gb|AEN70817.1| endo-1,4-beta-glucanase [Gossypium lobatum] gi|345103993|gb|AEN70818.1| endo-1,4-beta-glucanase [Gossypium trilobum] Back     alignment and taxonomy information
>gi|42765931|gb|AAS45400.1| endo-1,4-beta-glucanase [Populus tremuloides] Back     alignment and taxonomy information
>gi|345103989|gb|AEN70816.1| endo-1,4-beta-glucanase [Gossypium gossypioides] Back     alignment and taxonomy information
>gi|345103977|gb|AEN70810.1| endo-1,4-beta-glucanase [Gossypium hirsutum subsp. latifolium] Back     alignment and taxonomy information
>gi|225469870|ref|XP_002269783.1| PREDICTED: endoglucanase 25 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112813|ref|XP_002332697.1| hypothetical protein POPTRDRAFT_675657 [Populus trichocarpa] gi|222832951|gb|EEE71428.1| hypothetical protein POPTRDRAFT_675657 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|32454474|gb|AAP83128.1| endo-1,4-beta-glucanase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
TAIR|locus:2157022621 GH9A1 "glycosyl hydrolase 9A1" 0.970 0.969 0.717 4.6e-247
TAIR|locus:2135997620 GH9A3 "glycosyl hydrolase 9A3" 0.969 0.969 0.639 1.2e-214
TAIR|locus:2034158623 KOR2 "KORRIGAN 2" [Arabidopsis 0.951 0.947 0.489 2e-159
TAIR|locus:2136073 626 GH9C3 "glycosyl hydrolase 9C3" 0.706 0.699 0.389 1.2e-79
TAIR|locus:2014205620 GH9C2 "glycosyl hydrolase 9C2" 0.706 0.706 0.391 2e-79
TAIR|locus:2059375525 GH9B8 "glycosyl hydrolase 9B8" 0.704 0.832 0.396 3e-78
TAIR|locus:2028441627 GH9C1 "glycosyl hydrolase 9C1" 0.704 0.696 0.371 5.1e-74
TAIR|locus:2042441490 GH9B10 "glycosyl hydrolase 9B1 0.412 0.522 0.387 2e-71
TAIR|locus:2035384515 GH9B5 "glycosyl hydrolase 9B5" 0.746 0.899 0.354 3.3e-70
TAIR|locus:2005599525 GH9B7 "glycosyl hydrolase 9B7" 0.653 0.771 0.383 6.3e-69
TAIR|locus:2157022 GH9A1 "glycosyl hydrolase 9A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2380 (842.9 bits), Expect = 4.6e-247, P = 4.6e-247
 Identities = 434/605 (71%), Positives = 482/605 (79%)

Query:     3 MFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYV 62
             M+GRDPWGGPLEIN            NL D DRAALSRPLDETQQSWLLGPTE+KKKKYV
Sbjct:     1 MYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSRPLDETQQSWLLGPTEQKKKKYV 60

Query:    63 DLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFF 122
             DLGCIIVSRKIFVWTVGTL+ +ALLAGFITLIVKTVPRHH     PDNYT+ALHKAL FF
Sbjct:    61 DLGCIIVSRKIFVWTVGTLVAAALLAGFITLIVKTVPRHHPKTPPPDNYTIALHKALKFF 120

Query:   123 NAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITML 182
             NAQ+SGKLPKHNNVSWRGNS L+DGK  + S  KDLVGG+YDAGDAIKFNFP ++ +TML
Sbjct:   121 NAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVGGYYDAGDAIKFNFPMAYAMTML 180

Query:   183 SWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTT 242
             SWSVIEYSAKYEAAGEL HVKE+IKWGTDYFLKTFN +ADSI  +V+QVG+G+T  G+T 
Sbjct:   181 SWSVIEYSAKYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTD 240

Query:   243 PNDHYCWMRPEDIDYDRPVTECSS-CSDXXXXXXXXXXXXXIVFKDNKAYSQKLVHGAKT 301
             PNDHYCWMRPED+DY RPVT C+  CSD             IVFKDNK YS+KLVHGAK 
Sbjct:   241 PNDHYCWMRPEDMDYKRPVTTCNGGCSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKV 300

Query:   302 LFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKH 361
             ++QF R +R RYSAG+AE++KFYNS+ YWDEFIWGGAW+YYATGN +YL L T P + KH
Sbjct:   301 VYQFGRTRRGRYSAGTAESSKFYNSSMYWDEFIWGGAWMYYATGNVTYLNLITQPTMAKH 360

Query:   362 AGVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHNQTSITMCSYLPT 421
             AG FWG     V SWDNK                PGYPYEE+LRTFHNQTSI MCSYLP 
Sbjct:   361 AGAFWGGPYYGVFSWDNKLAGAQLLLSRLRLFLSPGYPYEEILRTFHNQTSIVMCSYLPI 420

Query:   422 FTTWNRTRG-LIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLR 480
             F  +NRT G LI+LNHG PQPLQY VNAAFLATL+SDYLDAADTPGWYCGPNF+ST  LR
Sbjct:   421 FNKFNRTNGGLIELNHGAPQPLQYSVNAAFLATLYSDYLDAADTPGWYCGPNFYSTSVLR 480

Query:   481 EFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKP 540
             +FA++QIDYILGKNPRKMSY+VGFG  YP+HVHHRGASIPKNK++YNCKGGWK RDS KP
Sbjct:   481 DFARSQIDYILGKNPRKMSYVVGFGTKYPRHVHHRGASIPKNKVKYNCKGGWKWRDSKKP 540

Query:   541 NPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTXXXXXXXXXXXXXXSGEKSRT-TIDKNT 599
             NPNT+ GA+VAGPDK DG+RDVR NYNYTEPT              SGE+  T  IDKNT
Sbjct:   541 NPNTIEGAMVAGPDKRDGYRDVRMNYNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNT 600

Query:   600 IFSAV 604
             IFSAV
Sbjct:   601 IFSAV 605
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009504 "cell plate" evidence=IDA
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0030244 "cellulose biosynthetic process" evidence=RCA;IMP;TAS
GO:0005769 "early endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0042538 "hyperosmotic salinity response" evidence=IMP
GO:0043622 "cortical microtubule organization" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009734 "auxin mediated signaling pathway" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010193 "response to ozone" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016051 "carbohydrate biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0008810 "cellulase activity" evidence=ISS
TAIR|locus:2135997 GH9A3 "glycosyl hydrolase 9A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034158 KOR2 "KORRIGAN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136073 GH9C3 "glycosyl hydrolase 9C3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014205 GH9C2 "glycosyl hydrolase 9C2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059375 GH9B8 "glycosyl hydrolase 9B8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028441 GH9C1 "glycosyl hydrolase 9C1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042441 GH9B10 "glycosyl hydrolase 9B10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035384 GH9B5 "glycosyl hydrolase 9B5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005599 GH9B7 "glycosyl hydrolase 9B7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C1U4GUN9_ORYSJ3, ., 2, ., 1, ., 40.750.96610.9676yesno
Q9STW8GUN21_ARATH3, ., 2, ., 1, ., 40.71870.97410.9741nono
Q84R49GUN10_ORYSJ3, ., 2, ., 1, ., 40.72040.98700.9870nono
Q38890GUN25_ARATH3, ., 2, ., 1, ., 40.80160.97090.9694yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.40.994
3rd Layer3.2.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011357001
SubName- Full=Chromosome undetermined scaffold_301, whole genome shotgun sequence; (618 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
pfam00759437 pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil 1e-178
PLN02345469 PLN02345, PLN02345, endoglucanase 1e-151
PLN02266510 PLN02266, PLN02266, endoglucanase 1e-126
PLN02171629 PLN02171, PLN02171, endoglucanase 1e-125
PLN02340614 PLN02340, PLN02340, endoglucanase 1e-122
PLN02613498 PLN02613, PLN02613, endoglucanase 1e-119
PLN00119489 PLN00119, PLN00119, endoglucanase 1e-118
PLN02420525 PLN02420, PLN02420, endoglucanase 1e-117
PLN02909486 PLN02909, PLN02909, Endoglucanase 1e-115
PLN02175484 PLN02175, PLN02175, endoglucanase 1e-105
PLN02308492 PLN02308, PLN02308, endoglucanase 1e-99
PLN03009495 PLN03009, PLN03009, cellulase 7e-96
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9 Back     alignment and domain information 
 Score =  511 bits (1319), Expect = e-178
 Identities = 208/482 (43%), Positives = 266/482 (55%), Gaps = 52/482 (10%)

Query: 110 NYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAI 169
           NY  AL K+++FF AQRSGKLP    V+WRG+S L DG         DL GG+YDAGD +
Sbjct: 1   NYGDALQKSILFFEAQRSGKLPADQRVTWRGDSGLSDGAPYGV----DLTGGWYDAGDHV 56

Query: 170 KFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVA 229
           KF  P + T TML+WSV EY   YE+ G+L  + + I+W TDY LK              
Sbjct: 57  KFGVPMAITTTMLAWSVYEYGKAYESGGQLPDLLDEIRWATDYLLKAHTAPNVL----YV 112

Query: 230 QVGAGDTSGGSTTPNDHYCWMRPEDIDYDRP---VTECSSCSDLAAEMAASLAAASIVFK 286
           QVG G+         DH CW RPED+   RP   +   +  SD+AAE AA+LAAASIVFK
Sbjct: 113 QVGDGNV--------DHKCWGRPEDMPTARPVYKIDASNPGSDVAAETAAALAAASIVFK 164

Query: 287 D-NKAYSQKLVHGAKTLFQFSRQQRARYSAG-SAEAAKFYNSTSYWDEFIWGGAWLYYAT 344
           D +  Y+ KL+  AKTL+ F+ + R RYS      A  FYNS+ Y DE +W  AWLY AT
Sbjct: 165 DSDPTYAAKLLEHAKTLYAFADKYRGRYSDSLYTAAGGFYNSSGYADELLWAAAWLYRAT 224

Query: 345 GNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEML 404
           G+++YL  A + G    AG  +    N V SWDNK AGA LLL+++     PG       
Sbjct: 225 GDATYLNYAESNGASLGAGDQFD---NGVFSWDNKHAGAQLLLAKVT-LGLPGADV--AK 278

Query: 405 RTFHNQTSITMCSYLP-TFTTWNRT-RGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAA 462
           +++ +     +C +LP  +     T  GL+ L       LQYV NAAFLA  ++DYL   
Sbjct: 279 QSYKSAADRFLCYWLPGGYGQVQYTPGGLLYLYQWG--SLQYVTNAAFLALAYADYL--- 333

Query: 463 DTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKN 522
                    +F      R+FAK QIDYILG NP KMSY+VG+G + P+  HHRGAS    
Sbjct: 334 --------SDFTGASKYRDFAKKQIDYILGDNPLKMSYVVGYGENPPQRPHHRGAS---- 381

Query: 523 KIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAA 582
                  G      S  PNPN LVGALV GP+ +D + D R++Y+  E     NA LV A
Sbjct: 382 ------GGWSDSIPSPPPNPNVLVGALVGGPNSNDCYTDDRSDYSTNEVATNWNAPLVGA 435

Query: 583 LV 584
           L 
Sbjct: 436 LA 437

Length = 437
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase Back     alignment and domain information
>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase Back     alignment and domain information
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase Back     alignment and domain information
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase Back     alignment and domain information
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase Back     alignment and domain information
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase Back     alignment and domain information
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase Back     alignment and domain information
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase Back     alignment and domain information
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase Back     alignment and domain information
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase Back     alignment and domain information
>gnl|CDD|166650 PLN03009, PLN03009, cellulase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 620
PLN02266510 endoglucanase 100.0
PLN02171 629 endoglucanase 100.0
PLN02345469 endoglucanase 100.0
PLN00119489 endoglucanase 100.0
PLN02340614 endoglucanase 100.0
PLN02909486 Endoglucanase 100.0
PLN02175484 endoglucanase 100.0
PLN02308492 endoglucanase 100.0
PLN02420525 endoglucanase 100.0
PLN02613498 endoglucanase 100.0
PLN03009495 cellulase 100.0
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 100.0
COG1331667 Highly conserved protein containing a thioredoxin 96.68
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.58
KOG2787403 consensus Lanthionine synthetase C-like protein 1 94.9
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 93.86
cd0285086 Cellulase_N_term Cellulase N-terminus domain. Cell 93.84
PF0292791 CelD_N: N-terminal ig-like domain of cellulase; In 93.08
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 91.87
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 90.22
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 83.87
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 81.27
>PLN02266 endoglucanase Back     alignment and domain information 
Probab=100.00  E-value=7.1e-119  Score=984.82  Aligned_cols=478  Identities=42%  Similarity=0.747  Sum_probs=421.9

Q ss_pred             hhHHHhhhheeeee------eccCCCcC--CCCCchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007041           82 LVSALLAGFITLIV------KTVPRHHH--SHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSS  153 (620)
Q Consensus        82 ~~~~~~~~~~~~~~------~~~p~~~~--f~i~~~~Y~~~l~~sl~ff~~QRsG~lp~~~~~~Wr~~s~l~Dg~~~~~~  153 (620)
                      +..|+.+++.+++.      ..-|-||+  .+|++++|.++|+++|+||++||||++|+.++++||++|||.||.+.   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~aL~~sl~fy~~QRsG~lp~~~~~~Wr~ds~~~Dg~~~---   86 (510)
T PLN02266         10 LRLFIFLAFSLLLCNGFSSSSNNPFHHRHHPRLASHNYRDALTKSILFFEGQRSGKLPSSQRMTWRRDSGLSDGSAM---   86 (510)
T ss_pred             HHHHHHHHHHHHhcCCCccccCCcccccCCCCCCcchHHHHHHHHHHHHHHhcCcCCCcccCCCCcccCCCCCCCcC---
Confidence            34444445444432      22344444  36999999999999999999999999999999999999999998765   


Q ss_pred             CccccccccccCCCCcccccchHHHHHHHHHHHHHhHHHHhhcCChhHHHHHHHHHHHHHhhcccccccccCcEEEEecC
Q 007041          154 ISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGA  233 (620)
Q Consensus       154 ~~~Dl~GGWyDAGD~~Ky~~~~a~s~~~L~w~~~e~~~~~~~~~~~~dlldeikwg~D~Llkm~~~~~~~~g~~y~qVgd  233 (620)
                       ++||+|||||||||+||++|+|+++++|+|+++||++.|+  +++||||||||||+|||||||+++    +.||+|||+
T Consensus        87 -~~DlsGGwyDAGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~--~~~pd~Ldelkw~~D~llk~~~~~----~~vy~qVg~  159 (510)
T PLN02266         87 -HVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMK--SELQNAKDAIRWATDYLLKATAHP----DTIYVQVGD  159 (510)
T ss_pred             -cccCCCcceeCCCCceecchHHHHHHHHHHHHHhhhhccc--cccHHHHHHHHHHHHHHHHhccCC----CeEEEEeCC
Confidence             8999999999999999999999999999999999999985  799999999999999999999987    999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcceeecC---CccchHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHHHHcc
Q 007041          234 GDTSGGSTTPNDHYCWMRPEDIDYDRPVTECS---SCSDLAAEMAASLAAASIVFK-DNKAYSQKLVHGAKTLFQFSRQQ  309 (620)
Q Consensus       234 ~~~~~g~~~~~DH~~W~~Pe~~~~~R~v~~~~---~~sdla~~~AAAlAaAs~vfk-~d~~yA~~lL~~A~~~y~~a~~~  309 (620)
                      ++.        ||.+|.+||+++++|+++.++   ||++++|++|||||+|||||| +|++||++||++||++|+||+++
T Consensus       160 ~~~--------Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~  231 (510)
T PLN02266        160 ANK--------DHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKY  231 (510)
T ss_pred             CCC--------CcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            987        999999999999999999965   799999999999999999999 99999999999999999999999


Q ss_pred             cCCcCCCC-ccccCCCCC-CCcchhHHHHHHHHHHHhCChhhHHHhhcCCCCCCCccccCcCCCccccccchhHHHHHHH
Q 007041          310 RARYSAGS-AEAAKFYNS-TSYWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLL  387 (620)
Q Consensus       310 ~~~y~~~~-~~~~~~Y~s-~~~~DE~~wAAaeLy~aTG~~~Yl~~a~~~~~~~~~~~~~~~~~~~~~~Wd~~~~~a~~ll  387 (620)
                      |+.|.++. +...++|++ ++|.||++|||+|||+|||+++|+++++...     ..+......+.|+||+|..++++||
T Consensus       232 ~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~~-----~~~g~~~~~~~~~WD~k~~ga~vLL  306 (510)
T PLN02266        232 RGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVNG-----QILGADEFDNTFGWDNKHVGARILL  306 (510)
T ss_pred             CCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH-----hhccccccCCccCcchhHHHHHHHH
Confidence            99987653 334678887 8899999999999999999999999987642     1111111235799999999999999


Q ss_pred             HHHhhhcCCCCchHHHHHHHHHHHHHHHHhhcCCC--CccccCC-CceeecCCCCChHHHHHHHHHHHHHHhhhhhccCC
Q 007041          388 SRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTF--TTWNRTR-GLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADT  464 (620)
Q Consensus       388 a~l~~~~~pg~p~~~~~~~~~~~~~~~~~~y~~~~--~~~~~tp-Gl~~~~~~~wgs~~~a~n~afl~~l~ad~l~~~~~  464 (620)
                      +++....     .+..+..|++.++.++|++++..  ....+|| ||+|++.  ||++||++|++||+++|++++.+.. 
T Consensus       307 a~~~~~~-----~~~~~~~yk~~~d~~~~~~~~~~~~~~~~~TpGGL~~~~~--wg~lrYa~~~afla~vya~~l~~~~-  378 (510)
T PLN02266        307 SKAFLVQ-----KVQSLHEYKGHADNFICSVIPGAPFSSTQYTPGGLLFKMS--DSNMQYVTSTSFLLLTYAKYLTSAK-  378 (510)
T ss_pred             HHHHhhc-----chHHHHHHHHHHHHHHHhccCCCCCCccccCCCeeEEeCC--CCcHHHHHHHHHHHHHHHHHHHhcC-
Confidence            9974321     23457889999999999998753  3457899 9999986  5999999999999999999987654 


Q ss_pred             CCccCCCCcCChHHHHHHHHhccccccccCCCCCceEeecCCCCCCCCCCCCCCCCCc---ccccccCCCccccCCCCCC
Q 007041          465 PGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKN---KIRYNCKGGWKLRDSSKPN  541 (620)
Q Consensus       465 ~g~~c~~~~~~~~~y~~~A~~qidYiLG~NP~~~SyVvG~G~~~p~~pHHR~ss~p~~---~~~~~c~~G~~~~~~~~pn  541 (620)
                      ..+.||+......+|++||++|||||||+||+++|||||||.|+|++||||+||||..   +.+++|.+||+|.+++.||
T Consensus       379 ~~~~cg~~~~~~~~~~~fA~~QidYiLG~NP~~~SyvVG~G~~~P~~pHHR~as~p~~~~~~~~~~C~~g~~~~~~~~~n  458 (510)
T PLN02266        379 TVVNCGGTVVTPARLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSVAAHPAKIQCSQGFSIMNSQSPN  458 (510)
T ss_pred             CceecCCCccCHHHHHHHHHhhhceeccCCCCCCceEEecCCCCCccccccCCCCCCcccCccccCCCCCccccCCCCCC
Confidence            4789999888899999999999999999999999999999999999999999999853   4467999999999999999


Q ss_pred             CCCccceeecCCCCCCCcccccccccccccccccchHHHHHHHHhhcCC
Q 007041          542 PNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAALVALSGEK  590 (620)
Q Consensus       542 ~~~l~GaLVGGPn~~d~y~D~r~~y~~NEvaId~NA~lv~ala~l~~~~  590 (620)
                      ||+|.||||||||.+|.|.|+|.+|++|||||||||+||++||+|....
T Consensus       459 ~~vL~GAlVGGPd~~D~y~D~r~~y~~nEva~dyNA~~vgalA~l~~~y  507 (510)
T PLN02266        459 PNVLVGAVVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSY  507 (510)
T ss_pred             cceecceeecCCCCCCCCCccccccccCcceeecchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998643

>PLN02171 endoglucanase Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PLN02340 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>PLN02175 endoglucanase Back     alignment and domain information
>PLN02308 endoglucanase Back     alignment and domain information
>PLN02420 endoglucanase Back     alignment and domain information
>PLN02613 endoglucanase Back     alignment and domain information
>PLN03009 cellulase Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd02850 Cellulase_N_term Cellulase N-terminus domain Back     alignment and domain information
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
1ks8_A433 The Structure Of Endoglucanase From Termite, Nasuti 5e-59
1js4_A 605 EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Le 8e-53
4dod_A475 The Structure Of Cbescii Cela Gh9 Module Length = 4 6e-46
2xfg_A466 Reassembly And Co-Crystallization Of A Family 9 Pro 2e-45
1ga2_A 614 The Crystal Structure Of Endoglucanase 9g From Clos 3e-43
1k72_A 614 The X-ray Crystal Structure Of Cel9g Complexed With 3e-43
1ia6_A441 Crystal Structure Of The Cellulase Cel9m Of C. Cell 7e-33
2yik_A611 Catalytic Domain Of Clostridium Thermocellum Celt L 1e-24
2yik_A611 Catalytic Domain Of Clostridium Thermocellum Celt L 5e-10
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. Length = 433 Back     alignment and structure 
Iteration: 1

 Score =  225 bits (574), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 230/466 (49%), Gaps = 62/466 (13%)
Query: 110 NYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAI 169
           +Y   L  +L+F+ AQRSG+LP    V+WR +S L D         +DL GG++DAGD +
Sbjct: 4   DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALND----QGDQGQDLTGGYFDAGDFV 59
Query: 170 KFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVA 229
           KF FP ++T T+L+W +I++ A Y +AG L+  ++ +KW TDYF+K       S +    
Sbjct: 60  KFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT----SQNEFYG 115
Query: 230 QVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECSSC---SDXXXXXXXXXXXXXIVFK 286
           QVG GD         DH  W RPED+   RP  +  +    SD             IVF+
Sbjct: 116 QVGQGDA--------DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFR 167
Query: 287 D-NKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATG 345
           + +  YS  L+  A+ LF F+   R +YS    +A  FY S  Y DE +W  AWLY AT 
Sbjct: 168 NVDGTYSNNLLTHARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATN 227
Query: 346 NSSYLQLATTPGLGKHAGVF-WGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEML 404
           +++YL  A +  L    G+  WG      L+WD+K                    Y++ +
Sbjct: 228 DNTYLNTAES--LYDEFGLQNWG----GGLNWDSKVSGVQVLLAKLTNKQ----AYKDTV 277
Query: 405 RTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADT 464
           +++ N   I      P        +GL+ ++      L++  NAAF+       L+AA+ 
Sbjct: 278 QSYVNYL-INNQQKTP--------KGLLYIDMWG--TLRHAANAAFIM------LEAAEL 320
Query: 465 PGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKI 524
                     S  + R+FA+TQIDY LG   R  S++ GFG++ P   HHR +S P    
Sbjct: 321 G--------LSASSYRQFAQTQIDYALGDGGR--SFVCGFGSNPPTRPHHRSSSCPPAPA 370
Query: 525 RYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTE 570
              C   W   +S  PN + L GALV GPD++D + D R++Y + E
Sbjct: 371 --TCD--WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNE 412
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Length = 605 Back     alignment and structure
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module Length = 475 Back     alignment and structure
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules Length = 466 Back     alignment and structure
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium Cellulolyticum Complexed With Cellobiose Length = 614 Back     alignment and structure
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With Cellotriose Length = 614 Back     alignment and structure
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum Length = 441 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 1e-152
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 1e-151
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 1e-151
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 1e-151
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 1e-148
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 1e-145
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 1e-139
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 1e-125
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 1e-112
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 2e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Length = 614 Back     alignment and structure
 Score =  452 bits (1163), Expect = e-152
 Identities = 161/517 (31%), Positives = 230/517 (44%), Gaps = 62/517 (11%)

Query: 106 ARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDA 165
           A   NY  AL K++MF+  QRSG LP     +WR +S +KDG         DL GG+YDA
Sbjct: 1   AGTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVG----VDLTGGWYDA 56

Query: 166 GDAIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSIS 225
           GD +KFN P S+T  ML+WS+ E    Y+ +G+  ++ + IKW  DYF+K          
Sbjct: 57  GDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTP----G 112

Query: 226 RMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRP---VTECSSCSDLAAEMAASLAAAS 282
               QVG G          DH  W   E +  +RP   V      S + A  AASLA+A+
Sbjct: 113 VYYYQVGDGGK--------DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAA 164

Query: 283 IVFKD-NKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLY 341
           +VFK  +  Y++K +  AK LF  +   +A+  AG   A+ +Y+S+S++D+  W   WLY
Sbjct: 165 VVFKSSDPTYAEKCISHAKNLFDMA--DKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLY 222

Query: 342 YATGNSSYLQLATT--PGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYP 399
            AT +S+YL  A +  P  GK               WD+   GA LLL++L         
Sbjct: 223 LATNDSTYLDKAESYVPNWGKEQQTDIIAYKW-GQCWDDVHYGAELLLAKLTNKQLYKDS 281

Query: 400 YEEMLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYL 459
            E  L  +    + T  SY P    W    G           L++    AFLA +++++ 
Sbjct: 282 IEMNLDFWTTGVNGTRVSYTPKGLAWLFQWG----------SLRHATTQAFLAGVYAEWE 331

Query: 460 DAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASI 519
               +               ++F K+QIDY LG      S++VG+G + P+H HHR A  
Sbjct: 332 GCTPSK----------VSVYKDFLKSQIDYALGSTG--RSFVVGYGVNPPQHPHHRTAH- 378

Query: 520 PKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGL 579
                            S   + +T+ GALV GPD  DG+ D   NY   E     NAG 
Sbjct: 379 ---------GSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGF 429

Query: 580 VAALVALSGEKSRTTIDKNTIFSAVPPMFPTPPPPPA 616
             AL  +      +  D    F A+     T      
Sbjct: 430 TGALAKMY---KHSGGDPIPNFKAIEK--ITNDEVII 461
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Length = 433 Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Length = 611 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Length = 441 Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Length = 466 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Length = 537 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Length = 639 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Length = 609 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Length = 586 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 100.0
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 100.0
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 100.0
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 100.0
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 100.0
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 100.0
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 100.0
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 100.0
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 100.0
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 100.0
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 94.44
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 93.68
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 93.26
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 92.76
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 92.67
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 91.99
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 91.59
1nc5_A373 Hypothetical protein YTER; structural genomics, he 91.04
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 89.63
3k4z_A289 Glycoside hydrolase family 9; cellulase, CBHA, CBM 87.36
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 87.25
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 84.17
3pmm_A382 Putative cytoplasmic protein; structural genomics, 82.05
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
Probab=100.00  E-value=6.4e-111  Score=918.05  Aligned_cols=424  Identities=39%  Similarity=0.685  Sum_probs=384.3

Q ss_pred             hhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCcccccchHHHHHHHHHHHHH
Q 007041          109 DNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSVIE  188 (620)
Q Consensus       109 ~~Y~~~l~~sl~ff~~QRsG~lp~~~~~~Wr~~s~l~Dg~~~~~~~~~Dl~GGWyDAGD~~Ky~~~~a~s~~~L~w~~~e  188 (620)
                      .+|.++|+++|+||++||||++|.+++++||++||+.||.+.    ++||+|||||||||+||++|+++++++|+|+++|
T Consensus         3 ~~Y~~~l~~sl~ff~~QRsG~lp~~~~~~wr~ds~l~Dg~~~----~~Dl~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e   78 (433)
T 1ks8_A            3 YDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQ----GQDLTGGYFDAGDFVKFGFPMAYTATVLAWGLID   78 (433)
T ss_dssp             CCHHHHHHHHHHHHHHTBCBSCCTTCSCTTCCCBCTTCBCTT----CCBCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCcccCCCcCCcccccCCCcC----cccCCCceeECCCCCeeccchHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999998765    8999999999999999999999999999999999


Q ss_pred             hHHHHhhcCChhHHHHHHHHHHHHHhhcccccccccCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecC---
Q 007041          189 YSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECS---  265 (620)
Q Consensus       189 ~~~~~~~~~~~~dlldeikwg~D~Llkm~~~~~~~~g~~y~qVgd~~~~~g~~~~~DH~~W~~Pe~~~~~R~v~~~~---  265 (620)
                      |++.|++++++||||||||||+|||||||+++    |.||+|||++..        ||.||.+||+|+++|++|+++   
T Consensus        79 ~~~~~~~~~~~~d~ldeikwg~D~llk~~~~~----g~~y~qVgd~~~--------Dh~~w~~Pe~~~~~R~~y~~~~~~  146 (433)
T 1ks8_A           79 FEAGYSSAGALDDGRKAVKWATDYFIKAHTSQ----NEFYGQVGQGDA--------DHAFWGRPEDMTMARPAYKIDTSR  146 (433)
T ss_dssp             THHHHHHTTCHHHHHHHHHHHHHHHHHHCCBT----TBEEEEESCHHH--------HHTCCSCGGGCCSCCCEEEECSSS
T ss_pred             hHHhhhcCCchHHHHHHHHHHHHHHHHhccCC----CcEEEEeCCCCc--------CCcccCCHhhCCCCCceeeccCCC
Confidence            99999999999999999999999999999988    999999999866        999999999999999999876   


Q ss_pred             CccchHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHHHHcccCCcCCCCccccCCCCCCCcchhHHHHHHHHHHHh
Q 007041          266 SCSDLAAEMAASLAAASIVFK-DNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYAT  344 (620)
Q Consensus       266 ~~sdla~~~AAAlAaAs~vfk-~d~~yA~~lL~~A~~~y~~a~~~~~~y~~~~~~~~~~Y~s~~~~DE~~wAAaeLy~aT  344 (620)
                      |++++++++|||||+|||||| .|++||++||++||++|+||++||+.|.+..+...++|+|+++.||++|||+|||+||
T Consensus       147 pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~~~~y~~~~~~~~~~Y~ss~~~DE~~WAAa~Ly~aT  226 (433)
T 1ks8_A          147 PGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRAT  226 (433)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHSGGGGGTSCCCCTHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCCCCCCCCCcccHHHHHHHHHHHHh
Confidence            899999999999999999999 8999999999999999999999999998776666789999999999999999999999


Q ss_pred             CChhhHHHhhcCCCCCCCccccCcCCCccccccchhHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhhcCCCCc
Q 007041          345 GNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPTFTT  424 (620)
Q Consensus       345 G~~~Yl~~a~~~~~~~~~~~~~~~~~~~~~~Wd~~~~~a~~lla~l~~~~~pg~p~~~~~~~~~~~~~~~~~~y~~~~~~  424 (620)
                      |+++|++++++++     ..+........|+|++|..+++++|+++..           .+.|++.++..+|.++..   
T Consensus       227 gd~~Yl~~~~~~~-----~~~~~~~~~~~~~Wd~~~~g~~~lla~~~~-----------~~~~~~~~~~~~~~~~~~---  287 (433)
T 1ks8_A          227 NDNTYLNTAESLY-----DEFGLQNWGGGLNWDSKVSGVQVLLAKLTN-----------KQAYKDTVQSYVNYLINN---  287 (433)
T ss_dssp             CCHHHHHHHHHHH-----HHTTGGGSCCCCCSSCCHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHT---
T ss_pred             CCHHHHHHHHHHH-----HhcCcCcCcCCcCccchhhHHHHHHhhccC-----------hHHHHHHHHHHHHHHHhc---
Confidence            9999999998753     111111234579999999999999988631           246778888888877742   


Q ss_pred             cccCC-CceeecCCCCChHHHHHHHHHHHHHHhhhhhccCCCCccCCCCcCChHHHHHHHHhccccccccCCCCCceEee
Q 007041          425 WNRTR-GLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVG  503 (620)
Q Consensus       425 ~~~tp-Gl~~~~~~~wgs~~~a~n~afl~~l~ad~l~~~~~~g~~c~~~~~~~~~y~~~A~~qidYiLG~NP~~~SyVvG  503 (620)
                      ...|| |+++..  .||||+|++|++|++++++++.              +++++|+++|++|||||||+|  ++|||||
T Consensus       288 ~~~tp~Gl~~~~--~WGs~~~~~n~a~l~~~~~~~~--------------~~~~~y~~~A~~qldYiLG~n--~~SyvvG  349 (433)
T 1ks8_A          288 QQKTPKGLLYID--MWGTLRHAANAAFIMLEAAELG--------------LSASSYRQFAQTQIDYALGDG--GRSFVCG  349 (433)
T ss_dssp             SCBCTTSCBCCC--STTHHHHHHHHHHHHHHHHHTT--------------SSHHHHHHHHHHHHHHHHTTT--SSCCBTT
T ss_pred             CCcCCCCceeec--CCchhHHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHhHhhccCCC--CcceEec
Confidence            46789 998864  5799999999999999999841              478999999999999999998  6899999


Q ss_pred             cCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCCCCCCccceeecCCCCCCCcccccccccccccccccchHHHHHH
Q 007041          504 FGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTEPTLAGNAGLVAAL  583 (620)
Q Consensus       504 ~G~~~p~~pHHR~ss~p~~~~~~~c~~G~~~~~~~~pn~~~l~GaLVGGPn~~d~y~D~r~~y~~NEvaId~NA~lv~al  583 (620)
                      ||+|+|++||||+++||..  +..|..|  +.+++.|||++|+|+||||||..|+|.|+|.+|++|||||||||+||++|
T Consensus       350 ~G~~~p~~pHHR~s~~~~~--~~~c~~~--~~~~~~pn~~~l~GalvGGP~~~d~y~D~~~~y~~nEvai~~NA~~v~~l  425 (433)
T 1ks8_A          350 FGSNPPTRPHHRSSSCPPA--PATCDWN--TFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSAL  425 (433)
T ss_dssp             SSSSCCSCCSCHHHHCCCT--TSCCSHH--HHTCSSCCSSCCTTCBCCCCCTTSCCCCCTTCHHHHCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCCcchhhcCCCc--ccccccc--ccCCCCCCCCCCccceecCCCcccCcCcCccccccccccHHhHHHHHHHH
Confidence            9999999999999999864  4588544  58889999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 007041          584 VALSGE  589 (620)
Q Consensus       584 a~l~~~  589 (620)
                      |+|...
T Consensus       426 a~l~~~  431 (433)
T 1ks8_A          426 AALVAL  431 (433)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999864
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 620
d1tf4a1460 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E 1e-148
d1g87a1454 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E 1e-141
d1ks8a_433 a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu 1e-135
d1ia6a_431 a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos 1e-133
d1ut9a1511 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios 1e-100
d1clca1441 a.102.1.2 (A:135-575) CelD cellulase, C-terminal d 5e-98
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

 Score =  433 bits (1115), Expect = e-148
 Identities = 172/516 (33%), Positives = 234/516 (45%), Gaps = 66/516 (12%)

Query: 108 PDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGD 167
             NY  AL K++ F+ AQRSGKLP++N VSWRG+S L DG         DL GG+YDAGD
Sbjct: 3   AFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVG----LDLTGGWYDAGD 58

Query: 168 AIKFNFPQSFTITMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRM 227
            +KF FP +FT TML+W  IE    Y  +G++ ++K+ ++W  DYF+K         + +
Sbjct: 59  HVKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVL 114

Query: 228 VAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRP---VTECSSCSDLAAEMAASLAAASIV 284
             QVG GD         DH  W   E +  +RP   V      SD+AAE AA++AA+SIV
Sbjct: 115 YVQVGDGDA--------DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIV 166

Query: 285 FKD-NKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYA 343
           F D + AY+  LV  AK L+ F+   R  YS      A + + + Y DE +WG  WLY A
Sbjct: 167 FADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKA 226

Query: 344 TGNSSYLQLATT-PGLGKHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEE 402
           TG+ SYL  A                     ++WD+K  G  +LL++             
Sbjct: 227 TGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANR 286

Query: 403 MLRTFHNQTSITMCSYLPTFTTWNRTRGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAA 462
            L  +    +     Y P       T G           L+Y  N AF+A +++  +D  
Sbjct: 287 WLDYWTVGVNGQRVPYSPGGMAVLDTWG----------ALRYAANTAFVALVYAKVIDDP 336

Query: 463 DTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKN 522
                Y            +FA  QI+Y LG NPR  SY+VGFGN+ P++ HHR A     
Sbjct: 337 VRKQRY-----------HDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHG--- 382

Query: 523 KIRYNCKGGWKLRDSSKPNPNTLVGALVAGPD-KHDGFRDVRTNYNYTEPTLAGNAGLVA 581
                         S   N + L GALV GP   +D + D R +Y   E     NAG  +
Sbjct: 383 -------SWTDSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSS 435

Query: 582 ALVALSGEKSRTTIDKNTIFSAVPPMFPTPPPPPAP 617
           AL  L  E   T +                PP   P
Sbjct: 436 ALAMLVEEYGGTPL-------------ADFPPTEEP 458
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454 Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433 Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511 Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 100.0
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 100.0
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 100.0
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 100.0
d1ut9a298 Cellulose 1,4-beta-cellobiosidase CbhA, precatalyt 94.19
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 91.93
d1clca2100 CelD cellulase, N-terminal domain {Clostridium the 91.82
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 91.14
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 82.19
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 81.6
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

Probab=100.00  E-value=2.4e-103  Score=863.43  Aligned_cols=434  Identities=38%  Similarity=0.604  Sum_probs=372.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCcccccchHHHHHHHHHHH
Q 007041          107 RPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISKDLVGGFYDAGDAIKFNFPQSFTITMLSWSV  186 (620)
Q Consensus       107 ~~~~Y~~~l~~sl~ff~~QRsG~lp~~~~~~Wr~~s~l~Dg~~~~~~~~~Dl~GGWyDAGD~~Ky~~~~a~s~~~L~w~~  186 (620)
                      ++.+|+++|+++|+||++||||.+|+.++++||++||+.||.+.    ++||+|||||||||+||++|+++++++|+|++
T Consensus         2 ~~~~Y~~al~~sl~ff~~QRsG~~p~~~~~~wr~~s~~~Dg~~~----~~DvsGGWyDAGD~~KY~~~~a~~~~~L~~a~   77 (460)
T d1tf4a1           2 PAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADV----GLDLTGGWYDAGDHVKFGFPMAFTATMLAWGA   77 (460)
T ss_dssp             CSSCHHHHHHHHHHHHHHTBCBSCCTTCCCTTCCCBCTTTTGGG----TSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHccCcCCCcccCCCCCccccCCCcccC----cCCCCCCceeCCCcceecccHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999876    89999999999999999999999999999999


Q ss_pred             HHhHHHHhhcCChhHHHHHHHHHHHHHhhcccccccccCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecC-
Q 007041          187 IEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTECS-  265 (620)
Q Consensus       187 ~e~~~~~~~~~~~~dlldeikwg~D~Llkm~~~~~~~~g~~y~qVgd~~~~~g~~~~~DH~~W~~Pe~~~~~R~v~~~~-  265 (620)
                      ++|++.|++.|++||||||||||+|||+|||+++    |.||+|||++..        ||.+|++|+.++.+|+.+.+. 
T Consensus        78 ~~~~~~~~~~~~~pdlLdE~~wglD~llkmq~~~----g~~y~qvgdg~~--------dh~~w~~~~~~~~~~~~~~~~~  145 (460)
T d1tf4a1          78 IESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVLYVQVGDGDA--------DHKWWGPAEVMPMERPSFKVDP  145 (460)
T ss_dssp             HHCHHHHHHTTCHHHHHHHHHHHHHHHHHTCSBT----TBEEEEESCHHH--------HHHCCSCGGGCCSCCCEEEEBT
T ss_pred             HHChHhhhcCCCcHHHHHHHHHHHHHHHhcccCC----CeEEEEecCCCc--------cccccCCCcCCCCCCCcceecC
Confidence            9999999999999999999999999999999998    999999999865        999999999998888877653 


Q ss_pred             --CccchHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHHHHcccCCcCCCCccccCCCCCCCcchhHHHHHHHHHH
Q 007041          266 --SCSDLAAEMAASLAAASIVFK-DNKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYY  342 (620)
Q Consensus       266 --~~sdla~~~AAAlAaAs~vfk-~d~~yA~~lL~~A~~~y~~a~~~~~~y~~~~~~~~~~Y~s~~~~DE~~wAAaeLy~  342 (620)
                        +++++++++|||||+|||||+ .|++||++||++||++|+||++||+.|....+.+..+|.++++.||++|||+|||+
T Consensus       146 ~~~~t~~~~~~aAalA~as~v~~~~d~~~A~~~l~aA~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~De~~wAAaeLy~  225 (460)
T d1tf4a1         146 SCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYK  225 (460)
T ss_dssp             TBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSCCCGGGTSTTHHHHCCSSCSHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCcCCCccccchHHHHHHHHHHH
Confidence              788899999999999999999 99999999999999999999999999987665555567789999999999999999


Q ss_pred             HhCChhhHHHhhcCCCC-CCCccccCcCCCccccccchhHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 007041          343 ATGNSSYLQLATTPGLG-KHAGVFWGILDNSVLSWDNKLAGAALLLSRLRLFLSPGYPYEEMLRTFHNQTSITMCSYLPT  421 (620)
Q Consensus       343 aTG~~~Yl~~a~~~~~~-~~~~~~~~~~~~~~~~Wd~~~~~a~~lla~l~~~~~pg~p~~~~~~~~~~~~~~~~~~y~~~  421 (620)
                      +||+++|+++++..... ..............++|+++..+++++|++...           ...+++.++..++.++..
T Consensus       226 aTG~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~~-----------~~~~~~~~~~~~~~~~~~  294 (460)
T d1tf4a1         226 ATGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETG-----------KQKYIDDANRWLDYWTVG  294 (460)
T ss_dssp             HHCCHHHHHHHHHHGGGSCBCTTSSCBCCSSCCSSSCCHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHTTTC
T ss_pred             HhCCHHHHHHHHHHhhhcccccccccccccccccccchhHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHhhh
Confidence            99999999998864311 110111111223468999999888888876431           244556666666665543


Q ss_pred             CC--ccccCC-CceeecCCCCChHHHHHHHHHHHHHHhhhhhccCCCCccCCCCcCChHHHHHHHHhccccccccCCCCC
Q 007041          422 FT--TWNRTR-GLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKM  498 (620)
Q Consensus       422 ~~--~~~~tp-Gl~~~~~~~wgs~~~a~n~afl~~l~ad~l~~~~~~g~~c~~~~~~~~~y~~~A~~qidYiLG~NP~~~  498 (620)
                      ..  ....++ |+.+..  .||||++++|++|+++++++++..           .+++++|+++|++|||||||+||+++
T Consensus       295 ~~~~~~~~~~~~~~~~~--~WGsn~~~~n~a~~~~~a~~~~~~-----------~~~~~~y~~~A~~qldylLG~Np~~~  361 (460)
T d1tf4a1         295 VNGQRVPYSPGGMAVLD--TWGALRYAANTAFVALVYAKVIDD-----------PVRKQRYHDFAVRQINYALGDNPRNS  361 (460)
T ss_dssp             BTTBCCCBCTTSCBCCC--SSSHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHTCSTTCC
T ss_pred             cccccCCcCCCcceecC--CCchHHHHHHHHHHHHHHHHHhcc-----------cCCHHHHHHHHHHhhheecccCCCCc
Confidence            22  234456 665543  479999999999999999886421           24568999999999999999999999


Q ss_pred             ceEeecCCCCCCCCCCCCCCCCCcccccccCCCccccCCCCCCCCCccceeecCCC-CCCCcccccccccccccccccch
Q 007041          499 SYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPD-KHDGFRDVRTNYNYTEPTLAGNA  577 (620)
Q Consensus       499 SyVvG~G~~~p~~pHHR~ss~p~~~~~~~c~~G~~~~~~~~pn~~~l~GaLVGGPn-~~d~y~D~r~~y~~NEvaId~NA  577 (620)
                      |||||||+|+|++||||+++++..          .+...+.|||++|+|+|||||| +.+||+|++++|++|||||||||
T Consensus       362 SyVtG~G~~~p~~pHHR~s~~~~~----------~~~~~~~p~~~~l~G~lvGGPn~~~~~y~D~~~~y~~nEvai~~NA  431 (460)
T d1tf4a1         362 SYVVGFGNNPPRNPHHRTAHGSWT----------DSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNA  431 (460)
T ss_dssp             CSBTTSSSSCCSCCSCHHHHTCSS----------SCTTSSSSCSSCCTTCBCCCCSSTTCCCCCCTTCTTTTCCCGGGGH
T ss_pred             CCCccCCCCCCCCCcCccccCCCc----------cccCCCCCCCCCcceeEecCCCCCCCCcCcCcchhhhhhhHHHHHH
Confidence            999999999999999999887532          2345678899999999999999 58999999999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 007041          578 GLVAALVALSGEK  590 (620)
Q Consensus       578 ~lv~ala~l~~~~  590 (620)
                      +||++||+|++..
T Consensus       432 ~lv~~la~l~~~~  444 (460)
T d1tf4a1         432 GFSSALAMLVEEY  444 (460)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998875
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ut9a2 b.1.18.2 (A:208-305) Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1clca2 b.1.18.2 (A:35-134) CelD cellulase, N-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure