Citrus Sinensis ID: 007056

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

MAATAAFFTNRQPTFILSPPKTKVNASQLFFHCNNSKPFFKTTISCSLQKPPPSLYPRITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLPAKDSVERTSVSA

cccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccEEEEccccHHcHHHHHHHHHHcccccEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHccccEEccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEcccccHHccccHHHHHHHHEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEEEEEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc

ccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHccccccccccccEEHHHHHHcHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEcHcccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccHHHEHHHHHHHHHHcccccccccEEEcccHHHHcccccccccEccccEEEEEcHHHccEEcccccEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEEEEEEEEccccccEEEEEEEcccccEEEEcccccccHHHHHHHHHHHHccccEEEEEEEEEEccccccEEEEEEEEEEcccEEEEcccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc

maataafftnrqptfilsppktkvnasqlffhcnnskpffkttiscslqkpppslypritasrpeyipnripdpnyvrVFDTTlrdgeqspgatltskEKLDIARQLAKLGVDIIeagfpaaskedFEAVRTIAKEVGnavdaesgyvpvicglsrcneRDIKTAWEAVKYakrprihtfiatsgihmehKLRKTKQQVVEIARSMVKFARslgcddvefspedagrsdRKFLYEILGEVIKVGattlnipdtvgitmptEFGKLIADIkantpgieNVVISTHcqndlglstANTIAGACAGARQVEVTINGigeragnaSLEEVVMAFKCRgehilgglytgiNTRHIVMASKMVEEytglhvqphkaivganafahesgihqdgmlkhkgtyeiispediglersseaGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDangeehvacstgtgpvdsayKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEksqlsthastgetvqrtfsgtgagMDIVVSSVKAYIGALNKMlgfkdqlpakdsvertsvsa

maataafftnrqptfilspPKTKVNASQLFFHCNNSKPFFKTTISCSLQKPPPSLYPRITAsrpeyipnripdpNYVRVFDTTLrdgeqspgatltskeklDIARQLAKLGVDIIEAGfpaaskedfEAVRTIAKEvgnavdaesgyvPVICGLSRCNERDIKTAWEavkyakrprIHTFiatsgihmehklRKTKQQVVEIARSMVKFarslgcddvefspedagrsdRKFLYEILGEVIkvgattlnipdtvgITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACStgtgpvdsAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKsqlsthastgetvqrtfsgtgaGMDIVVSSVKAYIGALNKMlgfkdqlpakdsvertsvsa

******FFTNRQPTFILSPPKTKVNASQLFFHCNNSKPFFKTTISCSLQ******YPRIT****EYIPNRIPDPNYVRVFDTTL****************LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS*******DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRG****************RTFSGTGAGMDIVVSSVKAYIGALNKMLGFK****************

**************************************************************************NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNK*********************

MAATAAFFTNRQPTFILSPPKTKVNASQLFFHCNNSKPFFKTTISCSLQKPPPSLYPRITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHME*********VVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEK************VQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLPA***********

*************TFILSPPKTKVNASQLFFHCNN****************************PEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQLP************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		620	2.2.26 [Sep-21-2011]
Q9C550		631	2-isopropylmalate synthas	yes	no	0.908	0.892	0.827	0.0
Q9LPR4		631	2-isopropylmalate synthas	no	no	0.975	0.958	0.788	0.0
O04973		589	2-isopropylmalate synthas	N/A	no	0.901	0.949	0.737	0.0
O04974		612	2-isopropylmalate synthas	N/A	no	0.953	0.965	0.715	0.0
Q39891		565	Probable 2-isopropylmalat	no	no	0.895	0.982	0.683	0.0
Q9FG67		506	Methylthioalkylmalate syn	no	no	0.7	0.857	0.632	1e-167
Q9FN52		503	Methylthioalkylmalate syn	no	no	0.714	0.880	0.603	1e-165
Q8VX04		506	Methylthioalkylmalate syn	no	no	0.695	0.851	0.624	1e-164
B7JYP4		536	2-isopropylmalate synthas	yes	no	0.820	0.949	0.532	1e-155
B7KJX8		536	2-isopropylmalate synthas	yes	no	0.841	0.973	0.532	1e-154

>sp\|Q9C550\|LEU12_ARATH 2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1	Back alignment and function desciption

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/567 (82%), Positives = 526/567 (92%), Gaps = 4/567 (0%)

Query: 40  FKTTISCSLQKPPPSLYPRITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKE 99
           F+ + S S   P P   PR    RP YIPNRI DPNYVR+FDTTLRDGEQSPGATLTSKE
Sbjct: 53  FRVSYSLSASSPLPPHAPR---RRPNYIPNRISDPNYVRIFDTTLRDGEQSPGATLTSKE 109

Query: 100 KLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE 159
           KLDIARQLAKLGVDIIEAGFPAASK+DFEAV+TIA+ VGN VD E+GYVPVICGLSRCN+
Sbjct: 110 KLDIARQLAKLGVDIIEAGFPAASKDDFEAVKTIAETVGNTVD-ENGYVPVICGLSRCNK 168

Query: 160 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE 219
           +DI+TAWEAVKYAKRPRIHTFIATS IH+++KL+K+K++V+EIAR+MV+FARSLGC+DVE
Sbjct: 169 KDIETAWEAVKYAKRPRIHTFIATSDIHLKYKLKKSKEEVIEIARNMVRFARSLGCEDVE 228

Query: 220 FSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENV 279
           FSPEDAGRS+R++LYEILGEVIK GATTLNIPDTVGIT+P+EFG+LIADIKANTPGI+NV
Sbjct: 229 FSPEDAGRSEREYLYEILGEVIKAGATTLNIPDTVGITLPSEFGQLIADIKANTPGIQNV 288

Query: 280 VISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILG 339
           +ISTHCQNDLGLSTANT++GA +GARQVEVTINGIGERAGNASLEEVVMA KCRG+H+LG
Sbjct: 289 IISTHCQNDLGLSTANTLSGAHSGARQVEVTINGIGERAGNASLEEVVMAIKCRGDHVLG 348

Query: 340 GLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIIS 399
           GL+TGI+TRHIVM SKMVEEYTG+  QPHKAIVGANAFAHESGIHQDGMLKHKGTYEI+S
Sbjct: 349 GLFTGIDTRHIVMTSKMVEEYTGMQTQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIMS 408

Query: 400 PEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTD 459
           PE+IGLERS++AGIVLGKLSGRHALKDRL ELGY L+D QL  +FW FKAVAEQKKRVTD
Sbjct: 409 PEEIGLERSNDAGIVLGKLSGRHALKDRLNELGYVLDDGQLSNLFWRFKAVAEQKKRVTD 468

Query: 460 ADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSA 519
           ADLIALVSDE+FQPE VWKLLDMQ+TCGTLGLST+TVKL D++G+EHVACS GTGPVD+A
Sbjct: 469 ADLIALVSDEVFQPEAVWKLLDMQITCGTLGLSTSTVKLADSDGKEHVACSVGTGPVDAA 528

Query: 520 YKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGT 579
           YKAVDLIVKEPATLLEYSMNAVT GIDAIATTRVLIRG+ +  ST+A TGE+V+RTFSGT
Sbjct: 529 YKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGT 588

Query: 580 GAGMDIVVSSVKAYIGALNKMLGFKDQ 606
           GAGMDIVVSSVKAY+GALNKMLGFK+ 
Sbjct: 589 GAGMDIVVSSVKAYVGALNKMLGFKEH 615

Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate). Involved in Leu biosynthesis, but do not participate in the chain elongation of glucosinolates.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 3

>sp\|Q9LPR4\|LEU11_ARATH 2-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=1 SV=2	Back alignment and function description

>sp\|O04973\|LEU1A_SOLPN 2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1	Back alignment and function description

>sp\|O04974\|LEU1B_SOLPN 2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1	Back alignment and function description

>sp\|Q39891\|LEU1_SOYBN Probable 2-isopropylmalate synthase OS=Glycine max GN=GMN56 PE=2 SV=1	Back alignment and function description

>sp\|Q9FG67\|MAM1_ARATH Methylthioalkylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=MAM1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FN52\|MAM3_ARATH Methylthioalkylmalate synthase 3, chloroplastic OS=Arabidopsis thaliana GN=MAM3 PE=1 SV=1	Back alignment and function description

>sp\|Q8VX04\|MAM2_ARATH Methylthioalkylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=MAM2 PE=2 SV=1	Back alignment and function description

>sp\|B7JYP4\|LEU1_CYAP8 2-isopropylmalate synthase OS=Cyanothece sp. (strain PCC 8801) GN=leuA PE=3 SV=1	Back alignment and function description

>sp\|B7KJX8\|LEU1_CYAP7 2-isopropylmalate synthase OS=Cyanothece sp. (strain PCC 7424) GN=leuA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
255579410		632	isopropylmalate synthase, putative [Rici	0.990	0.971	0.799	0.0
224083783		558	predicted protein [Populus trichocarpa]	0.898	0.998	0.864	0.0
75707983		623	2-isopropylmalate synthase 1 [Brassica i	0.972	0.967	0.791	0.0
449516089		639	PREDICTED: 2-isopropylmalate synthase 2,	0.912	0.885	0.833	0.0
58743500		623	Putative 2-isopropylmalate synthase [Bra	0.972	0.967	0.788	0.0
15221125		631	2-isopropylmalate synthase 2 [Arabidopsi	0.908	0.892	0.827	0.0
297844800		630	hypothetical protein ARALYDRAFT_472070 [	0.929	0.914	0.823	0.0
42562149		631	2-isopropylmalate synthase [Arabidopsis	0.975	0.958	0.788	0.0
449463448		633	PREDICTED: 2-isopropylmalate synthase 2,	0.912	0.894	0.826	0.0
171921096		672	2-isopropylmalate synthase [Brassica ole	0.879	0.811	0.853	0.0

>gi\|255579410\|ref\|XP_002530549.1\| isopropylmalate synthase, putative [Ricinus communis] gi\|223529911\|gb\|EEF31840.1\| isopropylmalate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/632 (79%), Positives = 548/632 (86%), Gaps = 18/632 (2%)

Query: 2   AATAAFFTNRQPTFILSPPKTKVNASQLFFHCNNSKPFFKTTISCSLQKPPPSLYPRIT- 60
           A TA  F+  Q T   SPP+  ++ S L F     + F  +  S S   P  S +   T 
Sbjct: 6   ATTAPKFSISQITSKPSPPR--ISHSLLHFTPTRCRFFSNSKFSVSF--PSNSRFKSSTA 61

Query: 61  ----------ASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKL 110
                     + RPEYIP+ IPDP+YVR+FDTTLRDGEQSPGATLTSKEKLDIARQL+KL
Sbjct: 62  ISCSSSAAPLSRRPEYIPSHIPDPSYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLSKL 121

Query: 111 GVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170
           GVDIIEAGFPAASK+DFEAV+TIAKEVGNAVD E GYVPVICGLSRCNE+DI+TAWEAVK
Sbjct: 122 GVDIIEAGFPAASKDDFEAVKTIAKEVGNAVD-EDGYVPVICGLSRCNEKDIRTAWEAVK 180

Query: 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 230
           YAKRPRIHTFIATS IHME+KLRK+K++VVEIARSMVKFARSLGCDDVEFSPEDAGRSDR
Sbjct: 181 YAKRPRIHTFIATSAIHMEYKLRKSKEEVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 240

Query: 231 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG 290
           +FLY ILGEVIK GATTLNIPDTVGIT+P+EFG+LIADIKANTPGI+ V+ISTHCQNDLG
Sbjct: 241 EFLYHILGEVIKAGATTLNIPDTVGITLPSEFGQLIADIKANTPGIDKVIISTHCQNDLG 300

Query: 291 LSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHI 350
           LSTANT+AGA AGARQVEVTINGIGERAGNASLEEVVMA KCRGEHILGGLYTGIN R I
Sbjct: 301 LSTANTLAGAYAGARQVEVTINGIGERAGNASLEEVVMAIKCRGEHILGGLYTGINPRQI 360

Query: 351 VMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSE 410
            MASKMVEEYTGLH+QPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERS++
Sbjct: 361 TMASKMVEEYTGLHLQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSND 420

Query: 411 AGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEI 470
           AGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFW FKAVAE KKRVTDADLIALVSDE+
Sbjct: 421 AGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWRFKAVAETKKRVTDADLIALVSDEV 480

Query: 471 FQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEP 530
           FQPE+VWKL D+QVTCGTLGLSTATVKL++A+GEEH+ACS G+GPVD+ YKAVDLIVKEP
Sbjct: 481 FQPEIVWKLGDLQVTCGTLGLSTATVKLINADGEEHIACSVGSGPVDAGYKAVDLIVKEP 540

Query: 531 ATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSV 590
             LLEYSMNAVT GIDAIATTRVLIR E +  STHA TGE  QRTFSG+GAGMDIVVSSV
Sbjct: 541 VELLEYSMNAVTEGIDAIATTRVLIRREDNHTSTHALTGEPFQRTFSGSGAGMDIVVSSV 600

Query: 591 KAYIGALNKMLGFKDQLPAK--DSVERTSVSA 620
           KAY+GALNKML  K Q   K   S +RT VSA
Sbjct: 601 KAYVGALNKMLALKQQFLTKRVSSTDRTPVSA 632

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224083783\|ref\|XP_002307122.1\| predicted protein [Populus trichocarpa] gi\|222856571\|gb\|EEE94118.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|75707983\|gb\|ABA26446.1\| 2-isopropylmalate synthase 1 [Brassica insularis]	Back alignment and taxonomy information

>gi\|449516089\|ref\|XP_004165080.1\| PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|58743500\|gb\|AAW81741.1\| Putative 2-isopropylmalate synthase [Brassica oleracea]	Back alignment and taxonomy information

>gi|15221125|ref|NP_177544.1| 2-isopropylmalate synthase 2 [Arabidopsis thaliana] gi|75168891|sp|Q9C550.1|LEU12_ARATH RecName: Full=2-isopropylmalate synthase 2, chloroplastic; AltName: Full=2-isopropylmalate synthase 1; AltName: Full=Methylthioalkylmalate synthase-like 3; Flags: Precursor gi|12325154|gb|AAG52530.1|AC016662_24 putative 2-isopropylmalate synthase; 30920-27612 [Arabidopsis thaliana] gi|12330687|gb|AAG52882.1|AF327647_1 2-isopropylmalate synthase [Arabidopsis thaliana] gi|16323111|gb|AAL15290.1| At1g74040/F2P9_9 [Arabidopsis thaliana] gi|23463041|gb|AAN33190.1| At1g74040/F2P9_9 [Arabidopsis thaliana] gi|332197419|gb|AEE35540.1| 2-isopropylmalate synthase 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297844800\|ref\|XP_002890281.1\| hypothetical protein ARALYDRAFT_472070 [Arabidopsis lyrata subsp. lyrata] gi\|297336123\|gb\|EFH66540.1\| hypothetical protein ARALYDRAFT_472070 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42562149\|ref\|NP_173285.2\| 2-isopropylmalate synthase [Arabidopsis thaliana] gi\|322510044\|sp\|Q9LPR4.2\|LEU11_ARATH RecName: Full=2-isopropylmalate synthase 1, chloroplastic; AltName: Full=Methylthioalkylmalate synthase-like 4; Flags: Precursor gi\|332191602\|gb\|AEE29723.1\| 2-isopropylmalate synthase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449463448\|ref\|XP_004149446.1\| PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|171921096\|gb\|ACB59195.1\| 2-isopropylmalate synthase [Brassica oleracea]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
TAIR\|locus:2014179		631	MAML-4 "methylthioalkylmalate	0.991	0.974	0.783	1e-256
TAIR\|locus:2031586		631	IMS1 "2-isopropylmalate syntha	0.930	0.914	0.811	1.4e-254
TAIR\|locus:2181151		506	MAM1 "methylthioalkylmalate sy	0.729	0.893	0.615	6.2e-149
TAIR\|locus:2178317		503	IMS2 "2-isopropylmalate syntha	0.693	0.854	0.619	8.1e-147
TIGR_CMR\|DET_0830		505	DET_0830 "2-isopropylmalate sy	0.766	0.940	0.529	7.6e-128
TIGR_CMR\|GSU_1906		512	GSU_1906 "2-isopropylmalate sy	0.767	0.929	0.512	2e-120
TIGR_CMR\|CHY_0521		509	CHY_0521 "2-isopropylmalate sy	0.761	0.927	0.518	9.8e-119
TIGR_CMR\|SPO_0422		524	SPO_0422 "2-isopropylmalate sy	0.832	0.984	0.475	1.2e-113
TIGR_CMR\|SO_4236		522	SO_4236 "2-isopropylmalate syn	0.738	0.877	0.460	5.6e-100
UNIPROTKB\|Q9KP83		516	leuA "2-isopropylmalate syntha	0.767	0.922	0.456	6.4e-99

TAIR\|locus:2014179 MAML-4 "methylthioalkylmalate synthase-like 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2471 (874.9 bits), Expect = 1.0e-256, P = 1.0e-256
 Identities = 488/623 (78%), Positives = 545/623 (87%)

Query:     2 AATAAFFTNRQPTFILSPPKTKVNASQLF---FHCNNSKPFFKTTISCSLQKPPPSLYPR 58
             ++T    T+  PTF   P  T +++S  F    H + S       +SCS+  P P L P 
Sbjct:    13 SSTTITTTSFLPTFSSKP--TPISSSFRFQPSHHRSISLRSQTLRLSCSISDPSP-LPPH 69

Query:    59 ITAS-RPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEA 117
                  RPEYIPNRI DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEA
Sbjct:    70 TPRRPRPEYIPNRISDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEA 129

Query:   118 GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRI 177
             GFPAASK+DFEAV+TIA+ VGN VD E+GYVPVICGLSRCN++DI+ AW+AVKYAKRPRI
Sbjct:   130 GFPAASKDDFEAVKTIAETVGNTVD-ENGYVPVICGLSRCNKKDIERAWDAVKYAKRPRI 188

Query:   178 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEIL 237
             HTFIATS IH+E+KL+KTK +V+EIARSMV+FARSLGC+DVEFSPEDAGRS+R++LYEIL
Sbjct:   189 HTFIATSDIHLEYKLKKTKAEVIEIARSMVRFARSLGCEDVEFSPEDAGRSEREYLYEIL 248

Query:   238 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 297
             GEVIK GATTLNIPDTVGIT+P+EFG+LI D+KANTPGIENVVISTHCQNDLGLSTANT+
Sbjct:   249 GEVIKAGATTLNIPDTVGITLPSEFGQLITDLKANTPGIENVVISTHCQNDLGLSTANTL 308

Query:   298 AGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMV 357
             +GA AGARQ+EVTINGIGERAGNASLEEVVMA KCRG+H+LGGL+TGI+TRHIVM SKMV
Sbjct:   309 SGAHAGARQMEVTINGIGERAGNASLEEVVMAIKCRGDHVLGGLFTGIDTRHIVMTSKMV 368

Query:   358 EEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGK 417
             EEYTG+  QPHKAIVGANAFAHESGIHQDGMLKHKGTYEII PE+IGLERS++AGIVLGK
Sbjct:   369 EEYTGMQTQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIICPEEIGLERSNDAGIVLGK 428

Query:   418 LSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVW 477
             LSGRHALKDRL ELGY+L+DEQL TIFW FK VAEQKKRVTDAD+IALVSDE+FQPE VW
Sbjct:   429 LSGRHALKDRLTELGYQLDDEQLSTIFWRFKTVAEQKKRVTDADIIALVSDEVFQPEAVW 488

Query:   478 KLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYS 537
             KLLD+Q+TCGTLGLSTATVKL DA+G+EHVACS GTGPVDSAYKAVDLIVKEPATLLEYS
Sbjct:   489 KLLDIQITCGTLGLSTATVKLADADGKEHVACSIGTGPVDSAYKAVDLIVKEPATLLEYS 548

Query:   538 MNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGAL 597
             MNAVT GIDAIATTRVLIRG     ST+A TGE VQRTFSGTGAGMDIVVSSVKAY+GAL
Sbjct:   549 MNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIVVSSVKAYVGAL 608

Query:   598 NKMLGFKDQLPAKDSVERTSVSA 620
             NKM+ FK+    K   ++  V+A
Sbjct:   609 NKMMDFKENSATKIPSQKNRVAA 631

GO:0003824 "catalytic activity" evidence=IEA

GO:0003852 "2-isopropylmalate synthase activity" evidence=IEA;IDA

GO:0009098 "leucine biosynthetic process" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2031586 IMS1 "2-isopropylmalate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181151 MAM1 "methylthioalkylmalate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178317 IMS2 "2-isopropylmalate synthase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0830 DET_0830 "2-isopropylmalate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1906 GSU_1906 "2-isopropylmalate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0521 CHY_0521 "2-isopropylmalate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0422 SPO_0422 "2-isopropylmalate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_4236 SO_4236 "2-isopropylmalate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KP83 leuA "2-isopropylmalate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7JYP4	LEU1_CYAP8	2, ., 3, ., 3, ., 1, 3	0.5322	0.8209	0.9496	yes	no
A2BRP4	LEU1_PROMS	2, ., 3, ., 3, ., 1, 3	0.5217	0.7806	0.8864	yes	no
Q112U2	LEU1_TRIEI	2, ., 3, ., 3, ., 1, 3	0.5306	0.8161	0.9353	yes	no
O67862	LEU1_AQUAE	2, ., 3, ., 3, ., 1, 3	0.5231	0.8161	0.9730	yes	no
Q3AEQ5	LEU1_CARHZ	2, ., 3, ., 3, ., 1, 3	0.5009	0.8	0.9744	yes	no
B0JGK2	LEU1_MICAN	2, ., 3, ., 3, ., 1, 3	0.5223	0.8129	0.9455	yes	no
Q47BI0	LEU1_DECAR	2, ., 3, ., 3, ., 1, 3	0.4805	0.8209	0.9922	yes	no
Q7V121	LEU1_PROMP	2, ., 3, ., 3, ., 1, 3	0.5216	0.7774	0.8827	yes	no
Q7VBG1	LEU1_PROMA	2, ., 3, ., 3, ., 1, 3	0.5037	0.8145	0.9421	yes	no
B1XLQ9	LEU1_SYNP2	2, ., 3, ., 3, ., 1, 3	0.5310	0.8032	0.9343	yes	no
Q3AIA2	LEU1_SYNSC	2, ., 3, ., 3, ., 1, 3	0.5045	0.8338	0.9574	yes	no
Q8DJ32	LEU1_THEEB	2, ., 3, ., 3, ., 1, 3	0.5310	0.8241	0.9551	yes	no
A8G5D5	LEU1_PROM2	2, ., 3, ., 3, ., 1, 3	0.5197	0.7806	0.8864	yes	no
Q3SHE7	LEU1_THIDA	2, ., 3, ., 3, ., 1, 3	0.5171	0.7935	0.9628	yes	no
Q46K01	LEU1_PROMT	2, ., 3, ., 3, ., 1, 3	0.5074	0.8145	0.9369	yes	no
B1WQQ4	LEU1_CYAA5	2, ., 3, ., 3, ., 1, 3	0.5371	0.8145	0.9404	yes	no
Q3MBA3	LEU1_ANAVT	2, ., 3, ., 3, ., 1, 3	0.5279	0.8112	0.9472	yes	no
A5GM47	LEU1_SYNPW	2, ., 3, ., 3, ., 1, 3	0.5238	0.7822	0.8981	yes	no
Q7NI93	LEU1_GLOVI	2, ., 3, ., 3, ., 1, 3	0.5273	0.8032	0.9256	yes	no
Q0AGN5	LEU1_NITEC	2, ., 3, ., 3, ., 1, 3	0.5105	0.7935	0.9647	yes	no
Q9C550	LEU12_ARATH	2, ., 3, ., 3, ., 1, 3	0.8271	0.9080	0.8922	yes	no
Q9LPR4	LEU11_ARATH	2, ., 3, ., 3, ., 1, 3	0.7888	0.9758	0.9587	no	no
A4J181	LEU1_DESRM	2, ., 3, ., 3, ., 1, 3	0.5113	0.8032	0.9861	yes	no
P48576	LEU1_SYNY3	2, ., 3, ., 3, ., 1, 3	0.5422	0.8064	0.9380	N/A	no
P48575	LEU1_NOSS1	2, ., 3, ., 3, ., 1, 3	0.5279	0.8112	0.9472	yes	no
Q0IBI3	LEU1_SYNS3	2, ., 3, ., 3, ., 1, 3	0.5198	0.7822	0.8981	yes	no
B0TCR1	LEU1_HELMI	2, ., 3, ., 3, ., 1, 3	0.5083	0.8129	0.9843	yes	no
B1H0A7	LEU1_UNCTG	2, ., 3, ., 3, ., 1, 3	0.4742	0.8209	0.9864	yes	no
O04973	LEU1A_SOLPN	2, ., 3, ., 3, ., 1, 3	0.7373	0.9016	0.9490	N/A	no
A5GRZ0	LEU1_SYNR3	2, ., 3, ., 3, ., 1, 3	0.5277	0.7822	0.9031	yes	no
B7KJX8	LEU1_CYAP7	2, ., 3, ., 3, ., 1, 3	0.5323	0.8419	0.9738	yes	no
O04974	LEU1B_SOLPN	2, ., 3, ., 3, ., 1, 3	0.715	0.9532	0.9656	N/A	no
A2BX52	LEU1_PROM5	2, ., 3, ., 3, ., 1, 3	0.5107	0.7887	0.8956	yes	no
A9BB43	LEU1_PROM4	2, ., 3, ., 3, ., 1, 3	0.5	0.8177	0.9458	yes	no
Q31AF9	LEU1_PROM9	2, ., 3, ., 3, ., 1, 3	0.5158	0.7806	0.8864	yes	no
Q7TUV5	LEU1_PROMM	2, ., 3, ., 3, ., 1, 3	0.5158	0.7822	0.8981	yes	no
Q3AYY2	LEU1_SYNS9	2, ., 3, ., 3, ., 1, 3	0.5337	0.7822	0.8981	yes	no
P94907	LEU1_MICAE	2, ., 3, ., 3, ., 1, 3	0.5186	0.8129	0.9455	yes	no
A2C859	LEU1_PROM3	2, ., 3, ., 3, ., 1, 3	0.5119	0.7822	0.8981	yes	no
Q7U892	LEU1_SYNPX	2, ., 3, ., 3, ., 1, 3	0.5082	0.8258	0.9481	yes	no
A3PDH0	LEU1_PROM0	2, ., 3, ., 3, ., 1, 3	0.5037	0.8129	0.9230	yes	no
A2C3L7	LEU1_PROM1	2, ., 3, ., 3, ., 1, 3	0.5074	0.8145	0.9369	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.3	0.983
3rd Layer	2.3.3.13	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.2339.1	3-isopropylmalate isomerase/dehydratase small subunit (EC-4.2.1.33) (172 aa)	•	•	•	•	•	0.999
	estExt_fgenesh4_pg.C_LG_VIII1506	SubName- Full=Putative uncharacterized protein; (443 aa)	•	•	•	•	•	0.998
	estExt_fgenesh4_pg.C_LG_X0404	hypothetical protein (463 aa)	•	•	•	•	•	0.998
	estExt_fgenesh4_pm.C_LG_III0598	hypothetical protein (605 aa)	•	•		•	•	0.997
	estExt_fgenesh4_pg.C_LG_I0451	hypothetical protein (611 aa)	•	•		•	•	0.997
	grail3.0005029001	acetolactate synthase I/II/III large subunit (EC-2.2.1.6) (651 aa)	•	•	•	•	•	0.994
	gw1.VII.445.1	hypothetical protein (410 aa)	•	•		•	•	0.980
	gw1.VIII.1377.1	hypothetical protein (414 aa)	•	•		•	•	0.979
	gw1.I.272.1	hypothetical protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-iso [...] (382 aa)	•	•	•		•	0.978
	gw1.VII.52.1	branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)	•			•	•	0.976

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		620
PLN02321		632	PLN02321, PLN02321, 2-isopropylmalate synthase	0.0
PRK00915		513	PRK00915, PRK00915, 2-isopropylmalate synthase; Va	0.0
PLN03228		503	PLN03228, PLN03228, methylthioalkylmalate synthase	0.0
TIGR00973		494	TIGR00973, leuA_bact, 2-isopropylmalate synthase,	0.0
cd07940		268	cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase	1e-167
PRK09389		488	PRK09389, PRK09389, (R)-citramalate synthase; Prov	1e-156
COG0119		409	COG0119, LeuA, Isopropylmalate/homocitrate/citrama	1e-156
PRK11858		378	PRK11858, aksA, trans-homoaconitate synthase; Revi	1e-146
TIGR02090		363	TIGR02090, LEU1_arch, isopropylmalate/citramalate/	1e-137
TIGR02660		365	TIGR02660, nifV_homocitr, homocitrate synthase Nif	4e-99
pfam00682		236	pfam00682, HMGL-like, HMGL-like	3e-88
cd03174		265	cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas	3e-87
cd07939		259	cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus	3e-71
PRK12344		524	PRK12344, PRK12344, putative alpha-isopropylmalate	3e-58
TIGR02146		344	TIGR02146, LysS_fung_arch, homocitrate synthase	9e-55
TIGR00977		526	TIGR00977, LeuA_rel, 2-isopropylmalate synthase/ho	3e-50
pfam08502		131	pfam08502, LeuA_dimer, LeuA allosteric (dimerisati	6e-42
cd07945		280	cd07945, DRE_TIM_CMS, Leptospira interrogans citra	1e-39
TIGR00970		564	TIGR00970, leuA_yeast, 2-isopropylmalate synthase,	2e-37
cd07948		262	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae hom	2e-37
cd07942		284	cd07942, DRE_TIM_LeuA, Mycobacterium tuberculosis	8e-35
smart00917		131	smart00917, LeuA_dimer, LeuA allosteric (dimerisat	1e-34
cd07941		273	cd07941, DRE_TIM_LeuA3, Desulfobacterium autotroph	2e-34
PRK03739		552	PRK03739, PRK03739, 2-isopropylmalate synthase; Va	1e-32
cd07947		279	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci	4e-18
PRK14847		333	PRK14847, PRK14847, hypothetical protein; Provisio	4e-18
cd07943		263	cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo	9e-16
TIGR03217		333	TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat	4e-14
PRK08195		337	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro	1e-11
cd07944		266	cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate	2e-10
cd07938		274	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-	2e-08
COG5016		472	COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr	4e-05
cd07937		275	cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an	4e-04
PRK12581		468	PRK12581, PRK12581, oxaloacetate decarboxylase; Pr	4e-04
PRK11780		217	PRK11780, PRK11780, isoprenoid biosynthesis protei	0.004

>gnl\|CDD\|215182 PLN02321, PLN02321, 2-isopropylmalate synthase	Back alignment and domain information

 Score = 1073 bits (2775), Expect = 0.0
 Identities = 471/622 (75%), Positives = 518/622 (83%), Gaps = 4/622 (0%)

Query: 2   AATAAFFTNRQPTFILSPPKT---KVNASQLFFHCNNSKPFFKTTISCSLQKPPPSLYPR 58
           +ATAA        F  +P ++                ++     + + S     PS    
Sbjct: 9   SATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSPSLASRASSALAASPSRPQV 68

Query: 59  ITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG 118
               RPEYIPNRI DPNYVR+FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG
Sbjct: 69  ARRPRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG 128

Query: 119 FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIH 178
           FP AS +D EAV+TIAKEVGN VD E GYVPVICGLSRCN++DI  AWEAVK+AKRPRIH
Sbjct: 129 FPIASPDDLEAVKTIAKEVGNEVD-EDGYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIH 187

Query: 179 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238
           TFIATS IHMEHKLRKT  +VVEIAR MVK+ARSLGC+DVEFSPEDAGRSD +FLY ILG
Sbjct: 188 TFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILG 247

Query: 239 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298
           EVIK GATTLNIPDTVG T+P+EFG+LIADIKANTPGIENV+ISTHCQNDLGLSTANT+A
Sbjct: 248 EVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLA 307

Query: 299 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 358
           GA AGARQVEVTINGIGERAGNASLEEVVMA KCRG+  LGGLYTGIN  HI   SKMV 
Sbjct: 308 GAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVS 367

Query: 359 EYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKL 418
           EYTG+ VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGL R ++AGIVLGKL
Sbjct: 368 EYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGIVLGKL 427

Query: 419 SGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWK 478
           SGRHALK RLKELGYEL+D++L  +F  FKAVAE+KK VTD DLIALVSDE+FQPEVVWK
Sbjct: 428 SGRHALKSRLKELGYELDDDELDDVFKRFKAVAEKKKGVTDEDLIALVSDEVFQPEVVWK 487

Query: 479 LLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSM 538
           LLD+QVTCGTLGLSTATVKL+  +G EH+ACS GTGPVD+AYKAVDLIVKEP TLLEYSM
Sbjct: 488 LLDLQVTCGTLGLSTATVKLIGPDGVEHIACSVGTGPVDAAYKAVDLIVKEPVTLLEYSM 547

Query: 539 NAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALN 598
           NAVT GIDAIATTRV+IRGE S  STHA TGE+VQRTFSG+GA MDIVVSSV+AY+ ALN
Sbjct: 548 NAVTEGIDAIATTRVVIRGENSYSSTHAQTGESVQRTFSGSGADMDIVVSSVRAYVSALN 607

Query: 599 KMLGFKDQLPAKDSVERTSVSA 620
           KMLGFK+   AK + ER++   
Sbjct: 608 KMLGFKEASKAKSASERSTSVV 629

Length = 632

>gnl\|CDD\|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type	Back alignment and domain information

>gnl\|CDD\|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>gnl\|CDD\|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV	Back alignment and domain information

>gnl\|CDD\|201390 pfam00682, HMGL-like, HMGL-like	Back alignment and domain information

>gnl\|CDD\|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily	Back alignment and domain information

>gnl\|CDD\|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|237068 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

>gnl\|CDD\|162728 TIGR02146, LysS_fung_arch, homocitrate synthase	Back alignment and domain information

>gnl\|CDD\|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate synthase family protein	Back alignment and domain information

>gnl\|CDD\|219870 pfam08502, LeuA_dimer, LeuA allosteric (dimerisation) domain	Back alignment and domain information

>gnl\|CDD\|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|233216 TIGR00970, leuA_yeast, 2-isopropylmalate synthase, yeast type	Back alignment and domain information

>gnl\|CDD\|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|163680 cd07942, DRE_TIM_LeuA, Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|214910 smart00917, LeuA_dimer, LeuA allosteric (dimerisation) domain	Back alignment and domain information

>gnl\|CDD\|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|235154 PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|184849 PRK14847, PRK14847, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase	Back alignment and domain information

>gnl\|CDD\|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	Back alignment and domain information

>gnl\|CDD\|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>gnl\|CDD\|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>gnl\|CDD\|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		620
PLN02321		632	2-isopropylmalate synthase	100.0
TIGR00973		494	leuA_bact 2-isopropylmalate synthase, bacterial ty	100.0
PRK00915		513	2-isopropylmalate synthase; Validated	100.0
PRK09389		488	(R)-citramalate synthase; Provisional	100.0
TIGR00977		526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	100.0
PRK03739		552	2-isopropylmalate synthase; Validated	100.0
TIGR00970		564	leuA_yeast 2-isopropylmalate synthase, yeast type.	100.0
KOG2367		560	consensus Alpha-isopropylmalate synthase/homocitra	100.0
PRK12344		524	putative alpha-isopropylmalate/homocitrate synthas	100.0
PLN03228		503	methylthioalkylmalate synthase; Provisional	100.0
COG0119		409	LeuA Isopropylmalate/homocitrate/citramalate synth	100.0
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	100.0
TIGR02660		365	nifV_homocitr homocitrate synthase NifV. This fami	100.0
TIGR02090		363	LEU1_arch isopropylmalate/citramalate/homocitrate	100.0
PRK14847		333	hypothetical protein; Provisional	100.0
cd07945		280	DRE_TIM_CMS Leptospira interrogans citramalate syn	100.0
cd07942		284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	100.0
cd07948		262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	100.0
PLN02746		347	hydroxymethylglutaryl-CoA lyase	100.0
TIGR02146		344	LysS_fung_arch homocitrate synthase. This model in	100.0
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	100.0
cd07940		268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	100.0
PRK05692		287	hydroxymethylglutaryl-CoA lyase; Provisional	100.0
cd07941		273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	100.0
cd07947		279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	100.0
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	100.0
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	100.0
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	100.0
cd07937		275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	100.0
cd07944		266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	100.0
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	100.0
PRK14040		593	oxaloacetate decarboxylase; Provisional	100.0
TIGR01108		582	oadA oxaloacetate decarboxylase alpha subunit. Thi	100.0
PRK08195		337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	100.0
TIGR03217		333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	100.0
PRK09282		592	pyruvate carboxylase subunit B; Validated	100.0
PRK12330		499	oxaloacetate decarboxylase; Provisional	100.0
PRK12331		448	oxaloacetate decarboxylase; Provisional	100.0
PRK14041		467	oxaloacetate decarboxylase; Provisional	100.0
PRK12581		468	oxaloacetate decarboxylase; Provisional	100.0
PRK12999		1146	pyruvate carboxylase; Reviewed	100.0
PRK14042		596	pyruvate carboxylase subunit B; Provisional	100.0
TIGR01235		1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
KOG2368		316	consensus Hydroxymethylglutaryl-CoA lyase [Energy	100.0
COG5016		472	Pyruvate/oxaloacetate carboxyltransferase [Energy	100.0
PF08502		133	LeuA_dimer: LeuA allosteric (dimerisation) domain;	99.97
COG1038		1149	PycA Pyruvate carboxylase [Energy production and c	99.86
KOG0369		1176	consensus Pyruvate carboxylase [Energy production	99.74
TIGR02146		344	LysS_fung_arch homocitrate synthase. This model in	99.74
PRK07028		430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.41
CHL00200		263	trpA tryptophan synthase alpha subunit; Provisiona	98.03
PLN02591		250	tryptophan synthase	98.02
TIGR00262		256	trpA tryptophan synthase, alpha subunit. Tryptopha	97.98
TIGR00423		309	radical SAM domain protein, CofH subfamily. This p	97.88
TIGR03700		351	mena_SCO4494 putative menaquinone biosynthesis pro	97.87
TIGR03699		340	mena_SCO4550 menaquinone biosynthesis protein, SCO	97.83
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	97.78
TIGR03551		343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	97.72
PRK08445		348	hypothetical protein; Provisional	97.67
PF00290		259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.38
PRK13125		244	trpA tryptophan synthase subunit alpha; Provisiona	97.38
COG0159		265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.3
PRK07360		371	FO synthase subunit 2; Reviewed	97.28
PRK08444		353	hypothetical protein; Provisional	97.21
cd04726		202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.94
TIGR03128		206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	96.93
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	96.89
PRK15108		345	biotin synthase; Provisional	96.78
PRK07094		323	biotin synthase; Provisional	96.77
PRK05926		370	hypothetical protein; Provisional	96.75
cd04724		242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	96.75
PLN02389		379	biotin synthase	96.75
TIGR00433		296	bioB biotin synthetase. Catalyzes the last step of	96.54
PRK06256		336	biotin synthase; Validated	96.49
PRK05927		350	hypothetical protein; Provisional	96.4
PRK06552		213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.37
PRK13209		283	L-xylulose 5-phosphate 3-epimerase; Reviewed	96.1
PRK09613		469	thiH thiamine biosynthesis protein ThiH; Reviewed	96.06
TIGR02351		366	thiH thiazole biosynthesis protein ThiH. Members t	96.03
TIGR02109		358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	96.02
PRK08508		279	biotin synthase; Provisional	95.79
TIGR03550		322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	95.76
PRK09240		371	thiH thiamine biosynthesis protein ThiH; Reviewed	95.75
PRK09856		275	fructoselysine 3-epimerase; Provisional	95.74
TIGR01163		210	rpe ribulose-phosphate 3-epimerase. This family co	95.72
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.71
PRK06245		336	cofG FO synthase subunit 1; Reviewed	95.7
PRK05301		378	pyrroloquinoline quinone biosynthesis protein PqqE	95.66
PRK13361		329	molybdenum cofactor biosynthesis protein A; Provis	95.55
PRK09997		258	hydroxypyruvate isomerase; Provisional	95.52
PRK13307		391	bifunctional formaldehyde-activating enzyme/3-hexu	95.51
PRK05718		212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.5
PRK09234		843	fbiC FO synthase; Reviewed	95.49
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.44
COG0269		217	SgbH 3-hexulose-6-phosphate synthase and related p	95.44
cd00019		279	AP2Ec AP endonuclease family 2; These endonuclease	95.35
PRK13210		284	putative L-xylulose 5-phosphate 3-epimerase; Revie	95.32
cd00739		257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	95.22
TIGR01182		204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	95.2
PRK06801		286	hypothetical protein; Provisional	95.14
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.09
cd00331		217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.01
TIGR03234		254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	94.97
TIGR03470		318	HpnH hopanoid biosynthesis associated radical SAM	94.86
COG0502		335	BioB Biotin synthase and related enzymes [Coenzyme	94.85
TIGR02320		285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	94.84
TIGR01859		282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	94.75
PRK07998		283	gatY putative fructose-1,6-bisphosphate aldolase;	94.6
PRK09989		258	hypothetical protein; Provisional	94.59
TIGR00542		279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	94.59
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	94.55
PRK06267		350	hypothetical protein; Provisional	94.55
cd04740		296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.46
PRK07709		285	fructose-bisphosphate aldolase; Provisional	94.31
PRK06015		201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.28
PRK09140		206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	94.27
PRK01060		281	endonuclease IV; Provisional	94.25
PRK07315		293	fructose-bisphosphate aldolase; Provisional	94.19
PRK09196		347	fructose-1,6-bisphosphate aldolase; Reviewed	94.16
PRK07114		222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.1
PRK12928		290	lipoyl synthase; Provisional	94.08
PRK08185		283	hypothetical protein; Provisional	94.06
KOG4175		268	consensus Tryptophan synthase alpha chain [Amino a	94.0
PRK00507		221	deoxyribose-phosphate aldolase; Provisional	94.0
cd02810		289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.0
TIGR01769		205	GGGP geranylgeranylglyceryl phosphate synthase. Th	93.88
cd00423		258	Pterin_binding Pterin binding enzymes. This family	93.81
PLN02951		373	Molybderin biosynthesis protein CNX2	93.76
COG2876		286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	93.45
PRK12595		360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	93.43
cd00959		203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	93.39
TIGR02320		285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	93.39
TIGR03581		236	EF_0839 conserved hypothetical protein EF_0839/AHA	93.39
cd00947		276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	93.28
PRK00164		331	moaA molybdenum cofactor biosynthesis protein A; R	93.08
COG2896		322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	92.9
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	92.89
TIGR03586		327	PseI pseudaminic acid synthase.	92.86
cd00408		281	DHDPS-like Dihydrodipicolinate synthase family. A	92.84
COG1060		370	ThiH Thiamine biosynthesis enzyme ThiH and related	92.77
PRK11613		282	folP dihydropteroate synthase; Provisional	92.75
TIGR00167		288	cbbA ketose-bisphosphate aldolases. fructose-bisph	92.7
PRK07535		261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	92.69
TIGR00126		211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	92.63
PRK09195		284	gatY tagatose-bisphosphate aldolase; Reviewed	92.6
PF01081		196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	92.58
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	92.53
PF04055		166	Radical_SAM: Radical SAM superfamily; InterPro: IP	92.47
PTZ00413		398	lipoate synthase; Provisional	92.47
TIGR01858		282	tag_bisphos_ald class II aldolase, tagatose bispho	92.45
PRK08610		286	fructose-bisphosphate aldolase; Reviewed	92.41
PRK12857		284	fructose-1,6-bisphosphate aldolase; Reviewed	92.34
PRK00278		260	trpC indole-3-glycerol-phosphate synthase; Reviewe	92.28
TIGR03249		296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	92.08
PLN02428		349	lipoic acid synthase	91.97
COG0800		211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	91.95
TIGR02313		294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	91.91
PRK12738		286	kbaY tagatose-bisphosphate aldolase; Reviewed	91.89
smart00729		216	Elp3 Elongator protein 3, MiaB family, Radical SAM	91.83
TIGR01290		442	nifB nitrogenase cofactor biosynthesis protein Nif	91.73
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.6
TIGR01361		260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	91.44
cd00377		243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	91.34
cd00958		235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	91.32
TIGR02317		285	prpB methylisocitrate lyase. Members of this famil	91.22
cd04722		200	TIM_phosphate_binding TIM barrel proteins share a	91.18
COG2513		289	PrpB PEP phosphonomutase and related enzymes [Carb	91.13
TIGR00587		274	nfo apurinic endonuclease (APN1). All proteins in	91.09
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.05
TIGR00284		499	dihydropteroate synthase-related protein. This pro	91.04
TIGR01521		347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	91.02
PRK11320		292	prpB 2-methylisocitrate lyase; Provisional	91.02
TIGR03569		329	NeuB_NnaB N-acetylneuraminate synthase. This famil	90.89
TIGR02666		334	moaA molybdenum cofactor biosynthesis protein A, b	90.8
COG2513		289	PrpB PEP phosphonomutase and related enzymes [Carb	90.8
TIGR01037		300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	90.69
cd00429		211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	90.65
PF04131		192	NanE: Putative N-acetylmannosamine-6-phosphate epi	90.63
PF13714		238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	90.62
smart00518		273	AP2Ec AP endonuclease family 2. These endonuclease	90.61
TIGR01361		260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	90.57
cd00952		309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	90.42
cd06556		240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	90.42
cd02940		299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	90.38
COG1082		274	IolE Sugar phosphate isomerases/epimerases [Carboh	90.34
PRK05835		307	fructose-bisphosphate aldolase; Provisional	90.32
cd00954		288	NAL N-Acetylneuraminic acid aldolase, also called	90.26
TIGR02319		294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	90.18
PRK07259		301	dihydroorotate dehydrogenase 1B; Reviewed	90.04
PRK12595		360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	89.92
TIGR01303		475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	89.87
PRK13813		215	orotidine 5'-phosphate decarboxylase; Provisional	89.79
cd00377		243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	89.77
PRK15108		345	biotin synthase; Provisional	89.75
PRK15452		443	putative protease; Provisional	89.74
COG0274		228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	89.68
cd00951		289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	89.61
TIGR01210		313	conserved hypothetical protein TIGR01210. This fam	89.49
COG2100		414	Predicted Fe-S oxidoreductase [General function pr	89.46
PRK12737		284	gatY tagatose-bisphosphate aldolase; Reviewed	89.45
TIGR02319		294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	89.43
COG1856		275	Uncharacterized homolog of biotin synthetase [Func	89.4
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	89.26
TIGR00539		360	hemN_rel putative oxygen-independent coproporphyri	89.25
TIGR02668		302	moaA_archaeal probable molybdenum cofactor biosynt	89.25
PRK09234		843	fbiC FO synthase; Reviewed	89.22
PRK07455		187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	89.08
PRK13753		279	dihydropteroate synthase; Provisional	88.93
cd00951		289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	88.89
TIGR00683		290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	88.86
PRK13585		241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	88.86
PRK03170		292	dihydrodipicolinate synthase; Provisional	88.81
PRK13399		347	fructose-1,6-bisphosphate aldolase; Provisional	88.75
PF00701		289	DHDPS: Dihydrodipicolinate synthetase family; Inte	88.7
PRK04165		450	acetyl-CoA decarbonylase/synthase complex subunit	88.69
cd02933		338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	88.69
TIGR00538		455	hemN oxygen-independent coproporphyrinogen III oxi	88.67
PRK07084		321	fructose-bisphosphate aldolase; Provisional	88.55
TIGR00683		290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	88.44
TIGR01211		522	ELP3 histone acetyltransferase, ELP3 family. The S	88.28
cd00952		309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	88.24
COG0826		347	Collagenase and related proteases [Posttranslation	88.11
cd02803		327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	88.11
TIGR00735		254	hisF imidazoleglycerol phosphate synthase, cyclase	88.11
PRK11320		292	prpB 2-methylisocitrate lyase; Provisional	87.73
TIGR01859		282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	87.67
cd00950		284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	87.66
PRK09249		453	coproporphyrinogen III oxidase; Provisional	87.65
cd04740		296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	87.62
TIGR02631		382	xylA_Arthro xylose isomerase, Arthrobacter type. T	87.6
TIGR00510		302	lipA lipoate synthase. The family shows strong seq	87.59
PRK03620		303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	87.36
PF01116		287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	87.29
PRK08318		420	dihydropyrimidine dehydrogenase subunit B; Validat	87.2
PRK09490		1229	metH B12-dependent methionine synthase; Provisiona	87.1
PLN02417		280	dihydrodipicolinate synthase	87.09
TIGR03249		296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	87.06
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	87.05
PF03102		241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	87.04
cd00950		284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	86.88
cd00954		288	NAL N-Acetylneuraminic acid aldolase, also called	86.88
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	86.83
PRK06843		404	inosine 5-monophosphate dehydrogenase; Validated	86.81
PRK06852		304	aldolase; Validated	86.74
cd04731		243	HisF The cyclase subunit of imidazoleglycerol phos	86.73
TIGR02321		290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	86.72
PRK05481		289	lipoyl synthase; Provisional	86.7
PRK05660		378	HemN family oxidoreductase; Provisional	86.64
cd00408		281	DHDPS-like Dihydrodipicolinate synthase family. A	86.59
TIGR00674		285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	86.38
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	86.33
cd02930		353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	86.26
TIGR02313		294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	86.25
COG0329		299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	86.25
TIGR03569		329	NeuB_NnaB N-acetylneuraminate synthase. This famil	86.25
PRK04147		293	N-acetylneuraminate lyase; Provisional	86.21
cd04733		338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	86.19
PRK13347		453	coproporphyrinogen III oxidase; Provisional	86.04
cd06557		254	KPHMT-like Ketopantoate hydroxymethyltransferase (	86.0
PRK07565		334	dihydroorotate dehydrogenase 2; Reviewed	85.99
TIGR02317		285	prpB methylisocitrate lyase. Members of this famil	85.92
PLN02424		332	ketopantoate hydroxymethyltransferase	85.89
TIGR03551		343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	85.79
cd04732		234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	85.76
PRK10481		224	hypothetical protein; Provisional	85.67
COG0036		220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	85.66
cd07937		275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	85.61
PF13714		238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	85.58
COG0329		299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	85.35
TIGR03822		321	AblA_like_2 lysine-2,3-aminomutase-related protein	85.29
PRK06801		286	hypothetical protein; Provisional	85.28
PRK08446		350	coproporphyrinogen III oxidase; Provisional	85.27
PRK10605		362	N-ethylmaleimide reductase; Provisional	85.27
PRK07226		267	fructose-bisphosphate aldolase; Provisional	85.17
PRK00311		264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.15
TIGR00222		263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.07
PRK03170		292	dihydrodipicolinate synthase; Provisional	85.02
TIGR02026		497	BchE magnesium-protoporphyrin IX monomethyl ester	84.8
PRK05799		374	coproporphyrinogen III oxidase; Provisional	84.6
PRK13745		412	anaerobic sulfatase-maturase; Provisional	84.4
cd01572		268	QPRTase Quinolinate phosphoribosyl transferase (QA	84.21
cd04735		353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	84.12
COG0635		416	HemN Coproporphyrinogen III oxidase and related Fe	84.09
PLN02858		1378	fructose-bisphosphate aldolase	83.94
TIGR01949		258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	83.91
cd04727		283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	83.75
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	83.72
TIGR00126		211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	83.62
TIGR03586		327	PseI pseudaminic acid synthase.	83.25
cd01568		269	QPRTase_NadC Quinolinate phosphoribosyl transferas	83.23
PRK07107		502	inosine 5-monophosphate dehydrogenase; Validated	83.2
PRK00112		366	tgt queuine tRNA-ribosyltransferase; Provisional	83.19
PRK00115		346	hemE uroporphyrinogen decarboxylase; Validated	83.18
COG3473		238	Maleate cis-trans isomerase [Secondary metabolites	83.13
PF00809		210	Pterin_bind: Pterin binding enzyme This Prosite en	82.89
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	82.82
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	82.8
TIGR00674		285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	82.8
PRK08508		279	biotin synthase; Provisional	82.79
COG0167		310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	82.74
COG3623		287	SgaU Putative L-xylulose-5-phosphate 3-epimerase [	82.73
TIGR01304		369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	82.7
PRK05628		375	coproporphyrinogen III oxidase; Validated	82.55
COG0191		286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	82.52
cd03315		265	MLE_like Muconate lactonizing enzyme (MLE) like su	82.47
cd02801		231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	82.42
PRK12677		384	xylose isomerase; Provisional	82.37
PRK07565		334	dihydroorotate dehydrogenase 2; Reviewed	82.29
cd01320		325	ADA Adenosine deaminase (ADA) is a monomeric zinc	82.24
PRK03620		303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	82.23
PRK06806		281	fructose-bisphosphate aldolase; Provisional	82.13
PF04273		110	DUF442: Putative phosphatase (DUF442); InterPro: I	82.07
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	82.03
PLN02334		229	ribulose-phosphate 3-epimerase	82.02
PRK08227		264	autoinducer 2 aldolase; Validated	82.0
TIGR01740		213	pyrF orotidine 5'-phosphate decarboxylase, subfami	81.97
PRK00748		233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	81.84
cd04722		200	TIM_phosphate_binding TIM barrel proteins share a	81.81
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	81.5
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	81.5
PRK06096		284	molybdenum transport protein ModD; Provisional	81.41
PTZ00170		228	D-ribulose-5-phosphate 3-epimerase; Provisional	81.37
cd01299		342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	81.37
PRK07360		371	FO synthase subunit 2; Reviewed	81.28
PF03102		241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	81.15
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	80.92
TIGR03849		237	arch_ComA phosphosulfolactate synthase. This model	80.9
cd02940		299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	80.76
TIGR01334		277	modD putative molybdenum utilization protein ModD.	80.66
COG1244		358	Predicted Fe-S oxidoreductase [General function pr	80.62
COG1830		265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	80.55
PF00701		289	DHDPS: Dihydrodipicolinate synthetase family; Inte	80.52
COG0167		310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	80.51
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	80.4
COG2089		347	SpsE Sialic acid synthase [Cell envelope biogenesi	80.34
TIGR01464		338	hemE uroporphyrinogen decarboxylase. This model re	80.13
PLN02433		345	uroporphyrinogen decarboxylase	80.09
PRK05581		220	ribulose-phosphate 3-epimerase; Validated	80.03

>PLN02321 2-isopropylmalate synthase	Back alignment and domain information

Probab=100.00  E-value=6.7e-135  Score=1136.06  Aligned_cols=566  Identities=82%  Similarity=1.205  Sum_probs=529.3

Q ss_pred             cccCCCCCCCCCCcccCCCCCcCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh
Q 007056           45 SCSLQKPPPSLYPRITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK  124 (620)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~  124 (620)
                      .|+....++......|++||.|+|+.+++|++|+|+|||||||+|++|..||+++|++|+++|+++||++||+|||.+||
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp  134 (632)
T PLN02321         55 ASSALAASPSRPQVARRPRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP  134 (632)
T ss_pred             hhhccCCCcccccccccCCcccccccCCCCCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc
Confidence            45555555667777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHH
Q 007056          125 EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIAR  204 (620)
Q Consensus       125 ~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~  204 (620)
                      +|+++++.|++.+.+.+..+ ++++.||+|+|++++||+++++++.+++.++||+|+++||+|+++++++|++|+++++.
T Consensus       135 ~D~e~vr~i~~~~~~~v~~~-~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~  213 (632)
T PLN02321        135 DDLEAVKTIAKEVGNEVDED-GYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIAR  213 (632)
T ss_pred             cHHHHHHHHHHhcccCCCcc-ccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHH
Confidence            99999999988655544433 67789999999999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe
Q 007056          205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH  284 (620)
Q Consensus       205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H  284 (620)
                      ++|++||++|+..|+|+|||++|++++|+.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|
T Consensus       214 ~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH  293 (632)
T PLN02321        214 DMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTH  293 (632)
T ss_pred             HHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence            99999999998669999999999999999999999999999999999999999999999999999999987666889999


Q ss_pred             cCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCC
Q 007056          285 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH  364 (620)
Q Consensus       285 ~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~  364 (620)
                      ||||+|||+||+++|+++||++||+||||||||+||++||+|+++|+.+++..++|+.|++|+++|+++|++|++++|++
T Consensus       294 ~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~  373 (632)
T PLN02321        294 CQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQ  373 (632)
T ss_pred             eCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999999999999999999999999999876533468999999999999999999999999


Q ss_pred             CCCCCcccCccceeeeccccccccccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHH
Q 007056          365 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIF  444 (620)
Q Consensus       365 v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~  444 (620)
                      +++||||||+|+|+|||||||||++|||.+||||+||+||++|.++.+|+|||||||++|+++|+++||+++++++.+++
T Consensus       374 v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~Pe~VG~~r~~~~~i~lgk~SGr~~v~~~L~~lG~~l~~~~~~~~~  453 (632)
T PLN02321        374 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGIVLGKLSGRHALKSRLKELGYELDDDELDDVF  453 (632)
T ss_pred             CCCCcccccccceehhcCccHHHHccCcccccccCHHHhCCcccccceecccccccHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999998887778899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHHHhcCCcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHH
Q 007056          445 WHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVD  524 (620)
Q Consensus       445 ~~vk~~a~~~~~v~~~el~~L~~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~  524 (620)
                      ++||+++++++.++++||+.|+++.+...++.|+|.+|+|.++....++|+|++..+||++++.+++|||||||+++||+
T Consensus       454 ~~vk~la~~~~~v~d~dl~~l~~~~~~~~~~~~~l~~~~v~~~~~~~~~a~v~l~~~~g~~~~~~a~G~GPvdA~~~Al~  533 (632)
T PLN02321        454 KRFKAVAEKKKGVTDEDLIALVSDEVFQPEVVWKLLDLQVTCGTLGLSTATVKLIGPDGVEHIACSVGTGPVDAAYKAVD  533 (632)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhccCCCceEEEEEEEEECCCCCcEEEEEEEeeCCEEEEEEEEecCHHHHHHHHHH
Confidence            99999999999999999999999998877778999999999998888999999975699999999999999999999999


Q ss_pred             HhhcCCceeeeeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhccc
Q 007056          525 LIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK  604 (620)
Q Consensus       525 ~~~~~~~~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~  604 (620)
                      ++++.+++|.||+++++++|+||+|+++|.|+.++..+.+|++.|+..++.|||+|+|+||++||++||++|+||++.++
T Consensus       534 ~~~~~~~~L~dY~v~~v~~g~da~a~v~V~i~~~~~~~~~~~~~~~~~~~~~~g~G~~~Dii~AS~~A~~~a~n~~~~~~  613 (632)
T PLN02321        534 LIVKEPVTLLEYSMNAVTEGIDAIATTRVVIRGENSYSSTHAQTGESVQRTFSGSGADMDIVVSSVRAYVSALNKMLGFK  613 (632)
T ss_pred             HhhCCCCEEEEEEEEccCCCCCceEEEEEEEEECCCcccccccccccCCCEEEEEEeCcCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999765555678887765679999999999999999999999999999866


Q ss_pred             CcCCcCC
Q 007056          605 DQLPAKD  611 (620)
Q Consensus       605 ~~~~~~~  611 (620)
                      .....+.
T Consensus       614 ~~~~~~~  620 (632)
T PLN02321        614 EASKAKS  620 (632)
T ss_pred             hhhcccc
Confidence            6554443

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type	Back alignment and domain information

>PRK00915 2-isopropylmalate synthase; Validated	Back alignment and domain information

>PRK09389 (R)-citramalate synthase; Provisional	Back alignment and domain information

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein	Back alignment and domain information

>PRK03739 2-isopropylmalate synthase; Validated	Back alignment and domain information

>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type	Back alignment and domain information

>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

>PLN03228 methylthioalkylmalate synthase; Provisional	Back alignment and domain information

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>TIGR02660 nifV_homocitr homocitrate synthase NifV	Back alignment and domain information

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>PRK14847 hypothetical protein; Provisional	Back alignment and domain information

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>TIGR02146 LysS_fung_arch homocitrate synthase	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional	Back alignment and domain information

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK14040 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit	Back alignment and domain information

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	Back alignment and domain information

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase	Back alignment and domain information

>PRK09282 pyruvate carboxylase subunit B; Validated	Back alignment and domain information

>PRK12330 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK12331 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK14041 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK12581 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK12999 pyruvate carboxylase; Reviewed	Back alignment and domain information

>PRK14042 pyruvate carboxylase subunit B; Provisional	Back alignment and domain information

>TIGR01235 pyruv_carbox pyruvate carboxylase	Back alignment and domain information

>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]	Back alignment and domain information

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]	Back alignment and domain information

>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []	Back alignment and domain information

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>TIGR02146 LysS_fung_arch homocitrate synthase	Back alignment and domain information

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated	Back alignment and domain information

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional	Back alignment and domain information

>PLN02591 tryptophan synthase	Back alignment and domain information

>TIGR00262 trpA tryptophan synthase, alpha subunit	Back alignment and domain information

>TIGR00423 radical SAM domain protein, CofH subfamily	Back alignment and domain information

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family	Back alignment and domain information

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit	Back alignment and domain information

>PRK08445 hypothetical protein; Provisional	Back alignment and domain information

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4	Back alignment and domain information

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]	Back alignment and domain information

>PRK07360 FO synthase subunit 2; Reviewed	Back alignment and domain information

>PRK08444 hypothetical protein; Provisional	Back alignment and domain information

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)	Back alignment and domain information

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>PRK15108 biotin synthase; Provisional	Back alignment and domain information

>PRK07094 biotin synthase; Provisional	Back alignment and domain information

>PRK05926 hypothetical protein; Provisional	Back alignment and domain information

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)	Back alignment and domain information

>PLN02389 biotin synthase	Back alignment and domain information

>TIGR00433 bioB biotin synthetase	Back alignment and domain information

>PRK06256 biotin synthase; Validated	Back alignment and domain information

>PRK05927 hypothetical protein; Provisional	Back alignment and domain information

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>TIGR02351 thiH thiazole biosynthesis protein ThiH	Back alignment and domain information

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E	Back alignment and domain information

>PRK08508 biotin synthase; Provisional	Back alignment and domain information

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit	Back alignment and domain information

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>PRK09856 fructoselysine 3-epimerase; Provisional	Back alignment and domain information

>TIGR01163 rpe ribulose-phosphate 3-epimerase	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK06245 cofG FO synthase subunit 1; Reviewed	Back alignment and domain information

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional	Back alignment and domain information

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional	Back alignment and domain information

>PRK09997 hydroxypyruvate isomerase; Provisional	Back alignment and domain information

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional	Back alignment and domain information

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair	Back alignment and domain information

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes	Back alignment and domain information

>TIGR01182 eda Entner-Doudoroff aldolase	Back alignment and domain information

>PRK06801 hypothetical protein; Provisional	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water	Back alignment and domain information

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase	Back alignment and domain information

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH	Back alignment and domain information

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]	Back alignment and domain information

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase	Back alignment and domain information

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist	Back alignment and domain information

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed	Back alignment and domain information

>PRK09989 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>PRK06267 hypothetical protein; Provisional	Back alignment and domain information

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain	Back alignment and domain information

>PRK07709 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	Back alignment and domain information

>PRK01060 endonuclease IV; Provisional	Back alignment and domain information

>PRK07315 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed	Back alignment and domain information

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK12928 lipoyl synthase; Provisional	Back alignment and domain information

>PRK08185 hypothetical protein; Provisional	Back alignment and domain information

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]	Back alignment and domain information

>PRK00507 deoxyribose-phosphate aldolase; Provisional	Back alignment and domain information

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase	Back alignment and domain information

>cd00423 Pterin_binding Pterin binding enzymes	Back alignment and domain information

>PLN02951 Molybderin biosynthesis protein CNX2	Back alignment and domain information

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	Back alignment and domain information

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family	Back alignment and domain information

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase	Back alignment and domain information

>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917	Back alignment and domain information

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	Back alignment and domain information

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed	Back alignment and domain information

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

>TIGR03586 PseI pseudaminic acid synthase	Back alignment and domain information

>cd00408 DHDPS-like Dihydrodipicolinate synthase family	Back alignment and domain information

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>PRK11613 folP dihydropteroate synthase; Provisional	Back alignment and domain information

>TIGR00167 cbbA ketose-bisphosphate aldolases	Back alignment and domain information

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated	Back alignment and domain information

>TIGR00126 deoC deoxyribose-phosphate aldolase	Back alignment and domain information

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed	Back alignment and domain information

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation	Back alignment and domain information

>PTZ00413 lipoate synthase; Provisional	Back alignment and domain information

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family	Back alignment and domain information

>PRK08610 fructose-bisphosphate aldolase; Reviewed	Back alignment and domain information

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed	Back alignment and domain information

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed	Back alignment and domain information

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase	Back alignment and domain information

>PLN02428 lipoic acid synthase	Back alignment and domain information

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed	Back alignment and domain information

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM	Back alignment and domain information

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	Back alignment and domain information

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea	Back alignment and domain information

>TIGR02317 prpB methylisocitrate lyase	Back alignment and domain information

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure	Back alignment and domain information

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00587 nfo apurinic endonuclease (APN1)	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>TIGR00284 dihydropteroate synthase-related protein	Back alignment and domain information

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype	Back alignment and domain information

>PRK11320 prpB 2-methylisocitrate lyase; Provisional	Back alignment and domain information

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase	Back alignment and domain information

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial	Back alignment and domain information

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein	Back alignment and domain information

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)	Back alignment and domain information

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []	Back alignment and domain information

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B	Back alignment and domain information

>smart00518 AP2Ec AP endonuclease family 2	Back alignment and domain information

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)	Back alignment and domain information

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds	Back alignment and domain information

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK05835 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)	Back alignment and domain information

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase	Back alignment and domain information

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed	Back alignment and domain information

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	Back alignment and domain information

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein	Back alignment and domain information

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional	Back alignment and domain information

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	Back alignment and domain information

>PRK15108 biotin synthase; Provisional	Back alignment and domain information

>PRK15452 putative protease; Provisional	Back alignment and domain information

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]	Back alignment and domain information

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases	Back alignment and domain information

>TIGR01210 conserved hypothetical protein TIGR01210	Back alignment and domain information

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed	Back alignment and domain information

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase	Back alignment and domain information

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>PRK13753 dihydropteroate synthase; Provisional	Back alignment and domain information

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases	Back alignment and domain information

>TIGR00683 nanA N-acetylneuraminate lyase	Back alignment and domain information

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	Back alignment and domain information

>PRK03170 dihydrodipicolinate synthase; Provisional	Back alignment and domain information

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional	Back alignment and domain information

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants	Back alignment and domain information

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional	Back alignment and domain information

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain	Back alignment and domain information

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>PRK07084 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>TIGR00683 nanA N-acetylneuraminate lyase	Back alignment and domain information

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family	Back alignment and domain information

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)	Back alignment and domain information

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain	Back alignment and domain information

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit	Back alignment and domain information

>PRK11320 prpB 2-methylisocitrate lyase; Provisional	Back alignment and domain information

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist	Back alignment and domain information

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis	Back alignment and domain information

>PRK09249 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain	Back alignment and domain information

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type	Back alignment and domain information

>TIGR00510 lipA lipoate synthase	Back alignment and domain information

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional	Back alignment and domain information

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate	Back alignment and domain information

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated	Back alignment and domain information

>PRK09490 metH B12-dependent methionine synthase; Provisional	Back alignment and domain information

>PLN02417 dihydrodipicolinate synthase	Back alignment and domain information

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)	Back alignment and domain information

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis	Back alignment and domain information

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK06852 aldolase; Validated	Back alignment and domain information

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)	Back alignment and domain information

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase	Back alignment and domain information

>PRK05481 lipoyl synthase; Provisional	Back alignment and domain information

>PRK05660 HemN family oxidoreductase; Provisional	Back alignment and domain information

>cd00408 DHDPS-like Dihydrodipicolinate synthase family	Back alignment and domain information

>TIGR00674 dapA dihydrodipicolinate synthase	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	Back alignment and domain information

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase	Back alignment and domain information

>PRK04147 N-acetylneuraminate lyase; Provisional	Back alignment and domain information

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2	Back alignment and domain information

>PRK13347 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway	Back alignment and domain information

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed	Back alignment and domain information

>TIGR02317 prpB methylisocitrate lyase	Back alignment and domain information

>PLN02424 ketopantoate hydroxymethyltransferase	Back alignment and domain information

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit	Back alignment and domain information

>cd04732 HisA HisA	Back alignment and domain information

>PRK10481 hypothetical protein; Provisional	Back alignment and domain information

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B	Back alignment and domain information

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein	Back alignment and domain information

>PRK06801 hypothetical protein; Provisional	Back alignment and domain information

>PRK08446 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK10605 N-ethylmaleimide reductase; Provisional	Back alignment and domain information

>PRK07226 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	Back alignment and domain information

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase	Back alignment and domain information

>PRK03170 dihydrodipicolinate synthase; Provisional	Back alignment and domain information

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	Back alignment and domain information

>PRK05799 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK13745 anaerobic sulfatase-maturase; Provisional	Back alignment and domain information

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4	Back alignment and domain information

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	Back alignment and domain information

>PLN02858 fructose-bisphosphate aldolase	Back alignment and domain information

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>TIGR00126 deoC deoxyribose-phosphate aldolase	Back alignment and domain information

>TIGR03586 PseI pseudaminic acid synthase	Back alignment and domain information

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional	Back alignment and domain information

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated	Back alignment and domain information

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>TIGR00674 dapA dihydrodipicolinate synthase	Back alignment and domain information

>PRK08508 biotin synthase; Provisional	Back alignment and domain information

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein	Back alignment and domain information

>PRK05628 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily	Back alignment and domain information

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain	Back alignment and domain information

>PRK12677 xylose isomerase; Provisional	Back alignment and domain information

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed	Back alignment and domain information

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	Back alignment and domain information

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional	Back alignment and domain information

>PRK06806 fructose-bisphosphate aldolase; Provisional	Back alignment and domain information

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>PLN02334 ribulose-phosphate 3-epimerase	Back alignment and domain information

>PRK08227 autoinducer 2 aldolase; Validated	Back alignment and domain information

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1	Back alignment and domain information

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	Back alignment and domain information

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>PRK06096 molybdenum transport protein ModD; Provisional	Back alignment and domain information

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional	Back alignment and domain information

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>PRK07360 FO synthase subunit 2; Reviewed	Back alignment and domain information

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>TIGR03849 arch_ComA phosphosulfolactate synthase	Back alignment and domain information

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>TIGR01334 modD putative molybdenum utilization protein ModD	Back alignment and domain information

>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants	Back alignment and domain information

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR01464 hemE uroporphyrinogen decarboxylase	Back alignment and domain information

>PLN02433 uroporphyrinogen decarboxylase	Back alignment and domain information

>PRK05581 ribulose-phosphate 3-epimerase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		620
3rmj_A		370	Crystal Structure Of Truncated Alpha-Isopropylmalat		1e-110
3eeg_A		325	Crystal Structure Of A 2-Isopropylmalate Synthase F		9e-87
3ewb_X		293	Crystal Structure Of N-Terminal Domain Of Putative		2e-67
3ivt_A		423	Homocitrate Synthase Lys4 Bound To 2-Og Length = 42		6e-35
3ivs_A		423	Homocitrate Synthase Lys4 Length = 423		4e-34
2ztj_A		382	Crystal Structure Of Homocitrate Synthase From Ther		4e-27
3a9i_A		376	Crystal Structure Of Homocitrate Synthase From Ther		4e-27
3ble_A		337	Crystal Structure Of The Catalytic Domain Of Licms		7e-26
3fig_A		646	Crystal Structure Of Leucine-bound Leua From Mycoba		2e-24
3hps_A		644	Crystal Structure Of Mycobacterium Tuberculosis Leu		2e-24
1sr9_A		644	Crystal Structure Of Leua From Mycobacterium Tuberc		2e-22
3hpx_A		425	Crystal Structure Of Mycobacterium Tuberculosis Leu		7e-21
3u6w_A		427	Truncated M. Tuberculosis Leua (1-425) Complexed Wi		8e-21
2cw6_A		298	Crystal Structure Of Human Hmg-Coa Lyase: Insights		2e-04
1ydo_A		307	Crystal Structure Of The Bacillis Subtilis Hmg-Coa		5e-04

>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate Synthase From Neisseria Meningitidis Length = 370