Citrus Sinensis ID: 007091

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MMNFRVKKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVTVTSYGSVNGLDDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKVNFT
ccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccEEHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccHHHHHHccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
cccEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHcHHcccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHcHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEcccccccccccccccc
mmnfrvkkrkvmkgeqitksgdhlpsidearssggesdediKEKVCVTVTSYgsvnglddkgsqedevspepyfpwkeeleslvhggvpkdLRGELWQAFVGVKARRTESYYQDLLAQEInadeskehdnsfgvprkwKKQIekdiprtfpahpalnedGRDSLRRLLLAYAlhnpsvgycQAMNFFAGLLLLLMPEENAFWTFVGIIddyfdgyyTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVtwisgpwfLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYgpalvttkdAGDAITLLQSlagstfdssQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERskggrvwkdpnglatklysfkhdpellieenkgtegsddaladgdlsykepaanlDEMLsglsvnselegrdLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESgqakavsspravhnqssvdspkrriglfglawrdrnkvnft
mmnfrvkkrkvmkgeqitksgdhlpsidearssggesdedikEKVCVTVTSYGsvnglddkgsqedEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEinadeskehdnsfgvprkwKKQIEKDIprtfpahpalnedGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQElrekhrpavllvveerskggrvwkdpnglATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAkavsspravhnqssvdspkrriglfglawrdrnkvnft
MMNFRVKKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVTVTSYGSVNGLDDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIeqleqevaelqqslADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKVNFT
********************************************VCVTVTSYGS******************YFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQ********************************************SLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHD**L*********************************************DLQEQVVWLKVELCSLLEDKRSAVLR********************************************************************************************************************************************IGLFGLAWR********
*******************************************************************V******PWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINA**********GVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKH********************************************************************************************VE***************************************************************************************************************************************************************LAW*********
**************EQITKSGDHLPSID************IKEKVCVTVTSYGSVNGLD***********EPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINAD**********VPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ***************AQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQY*********************SPKRRIGLFGLAWRDRNKVNFT
******************************************EKVCVTVTSYGSVNGLDDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLI**********DALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESG***********************I*LF*L*WRDR******
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MMNFRVKKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVTVTSYGSVNGLDDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESAMIQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKVNFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q6ZT07 1266 TBC1 domain family member yes no 0.365 0.178 0.399 2e-41
Q3UYK3 1264 TBC1 domain family member yes no 0.365 0.178 0.395 1e-40
Q9Z1A9 1134 TBC1 domain family member no no 0.365 0.199 0.386 1e-40
A3KGB4 1114 TBC1 domain family member no no 0.359 0.199 0.380 1e-40
Q0IIM8 1120 TBC1 domain family member no no 0.359 0.198 0.380 1e-40
Q5SVR0 1263 TBC1 domain family member no no 0.357 0.174 0.390 6e-40
Q66K14 1250 TBC1 domain family member no no 0.359 0.177 0.389 9e-40
O95759 1140 TBC1 domain family member no no 0.365 0.198 0.374 1e-39
B1AVH7922 TBC1 domain family member no no 0.423 0.284 0.340 1e-37
B5DFA1924 TBC1 domain family member no no 0.423 0.283 0.343 2e-37
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function desciption
 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 143/243 (58%), Gaps = 17/243 (6%)

Query: 78  EELESLVHGGVPKDLRGELWQAFVG-VKARRTE-SYYQDLLAQEINADESKEHDNSFGVP 135
           E+   LV  G+P+ +RGELW    G +  + T   YY+DL+            + S G  
Sbjct: 506 EKTRELVLKGIPESMRGELWLLLSGAINEKATHPGYYEDLV------------EKSMGKY 553

Query: 136 RKWKKQIEKDIPRTFPAHPAL-NEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLL 194
               ++IE+D+ R+ P HPA  NE G  +LRR+L AYA  NP++GYCQAMN    +LLL 
Sbjct: 554 NLATEEIERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLY 613

Query: 195 MPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTW 254
             EE AFW  V + +     YY   ++ A VDQ VFEEL R+  P+L   +  LGV ++ 
Sbjct: 614 AKEEEAFWLLVALCERMLPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGV-IST 672

Query: 255 ISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAI 314
           IS  WFL++F++++P+ES + V D   YEG +V +F+ ALA+++     L+  KD G+A+
Sbjct: 673 ISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKV-IFQLALAVLDANVDKLLNCKDDGEAM 731

Query: 315 TLL 317
           T+L
Sbjct: 732 TVL 734
May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2 Back     alignment and function description
>sp|A3KGB4|TBC8B_MOUSE TBC1 domain family member 8B OS=Mus musculus GN=Tbc1d8b PE=2 SV=1 Back     alignment and function description
>sp|Q0IIM8|TBC8B_HUMAN TBC1 domain family member 8B OS=Homo sapiens GN=TBC1D8B PE=1 SV=2 Back     alignment and function description
>sp|Q5SVR0|TBC9B_MOUSE TBC1 domain family member 9B OS=Mus musculus GN=Tbc1d9b PE=2 SV=1 Back     alignment and function description
>sp|Q66K14|TBC9B_HUMAN TBC1 domain family member 9B OS=Homo sapiens GN=TBC1D9B PE=1 SV=3 Back     alignment and function description
>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3 Back     alignment and function description
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
224068612 831 predicted protein [Populus trichocarpa] 0.987 0.734 0.747 0.0
255568456 894 run and tbc1 domain containing 3, plant, 0.980 0.677 0.745 0.0
225439783 796 PREDICTED: uncharacterized protein LOC10 0.966 0.75 0.702 0.0
42569696 882 RabGAP/TBC domain-containing protein [Ar 0.975 0.683 0.691 0.0
297827237 874 RabGAP/TBC domain-containing protein [Ar 0.966 0.683 0.691 0.0
297741503 735 unnamed protein product [Vitis vinifera] 0.923 0.776 0.694 0.0
356536911 825 PREDICTED: uncharacterized protein LOC10 0.919 0.688 0.709 0.0
225448751 830 PREDICTED: uncharacterized protein LOC10 0.993 0.739 0.665 0.0
449440369 775 PREDICTED: uncharacterized protein LOC10 0.977 0.779 0.693 0.0
449519166 775 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.977 0.779 0.693 0.0
>gi|224068612|ref|XP_002326158.1| predicted protein [Populus trichocarpa] gi|222833351|gb|EEE71828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/619 (74%), Positives = 536/619 (86%), Gaps = 9/619 (1%)

Query: 1   MMNFRVKKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVTVTSYGSVNGLDD 60
           MM+ RVK  K MK    T +GDHLPSI +  SSGG S  +I +++C+  TS  +V+   +
Sbjct: 215 MMSSRVKNIKDMKYRHNTINGDHLPSIKKTGSSGGSSVAEIDKELCIKETSDDNVDKSTE 274

Query: 61  KGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEI 120
           + + + + SPE +FPWKE LE LV GGVPKDLRGE+WQAFVGVK RR E YY+ LLA+E 
Sbjct: 275 ETNVDSKESPESFFPWKE-LEFLVRGGVPKDLRGEVWQAFVGVKTRRVERYYEGLLAEET 333

Query: 121 NADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGY 180
           N DESKEH+NS   PRKWKKQIEKDIPRTFP HPAL+E GRDSLRR+L+AYA HNPSVGY
Sbjct: 334 NTDESKEHNNSNAAPRKWKKQIEKDIPRTFPGHPALDERGRDSLRRVLVAYARHNPSVGY 393

Query: 181 CQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPK 240
           CQAMNFFAGLLLLLMPEENAFWT VGI+DDYFDGYYTEEMIE+QVDQLVFEELIRE+FPK
Sbjct: 394 CQAMNFFAGLLLLLMPEENAFWTLVGILDDYFDGYYTEEMIESQVDQLVFEELIREKFPK 453

Query: 241 LVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY 300
           LV+HLDYLGVQV WISGPWFLSIF+N+LPWESVLRVWDVLL+EGNRVMLF+TALALMELY
Sbjct: 454 LVNHLDYLGVQVAWISGPWFLSIFINMLPWESVLRVWDVLLFEGNRVMLFQTALALMELY 513

Query: 301 GPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLV 360
           GPALVTTKDAGDAITLLQSLAGSTFDSSQLV TAC+GYL VTEARL +LREKHRPAVL+V
Sbjct: 514 GPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACIGYLAVTEARLLQLREKHRPAVLVV 573

Query: 361 VEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLD 420
           VEERSKGGRVWK   GLA+KLYSFKHDP  L+EE K +EG D +L +        ++NLD
Sbjct: 574 VEERSKGGRVWKGSKGLASKLYSFKHDPGSLVEEKKVSEG-DKSLLESH------SSNLD 626

Query: 421 EMLSGLSVNSELEG-RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRR 479
           ++LSGLSV+ E++   DLQEQVVWLKVELC L+E+KRSA+LRAEELETALMEMV+QDNRR
Sbjct: 627 DLLSGLSVDPEVDSLPDLQEQVVWLKVELCRLMEEKRSAILRAEELETALMEMVQQDNRR 686

Query: 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRY 539
           QLSA++EQLEQEVA+L+Q+LA+K+EQE+AM++VLM+VEQEQ+ITE+AR  AEQDA AQRY
Sbjct: 687 QLSAKVEQLEQEVADLRQALANKKEQEAAMLKVLMRVEQEQKITEEARIGAEQDAAAQRY 746

Query: 540 AVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPK 599
           AVNV +EKYEKAMAS+AQME+R VMAES+LEAT+QY+SG+AKA SSPR   N SSV+SP+
Sbjct: 747 AVNVFQEKYEKAMASLAQMEQRVVMAESVLEATIQYQSGKAKAQSSPRYTRNLSSVESPR 806

Query: 600 RRIGLFGLAWRDRNKVNFT 618
           RRIGLFGL WRDRNKV+F 
Sbjct: 807 RRIGLFGLGWRDRNKVSFC 825

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568456|ref|XP_002525202.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] gi|223535499|gb|EEF37168.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225439783|ref|XP_002273633.1| PREDICTED: uncharacterized protein LOC100248309 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42569696|ref|NP_181266.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330254284|gb|AEC09378.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827237|ref|XP_002881501.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327340|gb|EFH57760.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297741503|emb|CBI32635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536911|ref|XP_003536976.1| PREDICTED: uncharacterized protein LOC100805928 [Glycine max] Back     alignment and taxonomy information
>gi|225448751|ref|XP_002281489.1| PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera] gi|297736455|emb|CBI25326.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440369|ref|XP_004137957.1| PREDICTED: uncharacterized protein LOC101210751 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519166|ref|XP_004166606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227455 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2097213777 AT3G55020 [Arabidopsis thalian 0.946 0.752 0.628 1.1e-192
TAIR|locus:2077472400 AT3G07890 [Arabidopsis thalian 0.440 0.68 0.353 1.2e-42
DICTYBASE|DDB_G0270856831 DDB_G0270856 "GRAM domain-cont 0.339 0.252 0.373 7.5e-38
UNIPROTKB|F1MS95 1226 TBC1D9 "Uncharacterized protei 0.365 0.184 0.403 2.7e-37
UNIPROTKB|Q6ZT07 1266 TBC1D9 "TBC1 domain family mem 0.365 0.178 0.399 3.8e-37
UNIPROTKB|F1PHW7 1199 TBC1D9 "Uncharacterized protei 0.365 0.188 0.399 4.7e-37
UNIPROTKB|J9NY91 1264 TBC1D9 "Uncharacterized protei 0.365 0.178 0.399 5.2e-37
UNIPROTKB|J9P174 1266 TBC1D9 "Uncharacterized protei 0.365 0.178 0.399 5.2e-37
UNIPROTKB|D4A091 1029 Tbc1d9 "Protein Tbc1d9" [Rattu 0.365 0.219 0.399 8.2e-37
RGD|1308221 1262 Tbc1d9 "TBC1 domain family, me 0.365 0.179 0.399 1.2e-36
TAIR|locus:2097213 AT3G55020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
 Identities = 383/609 (62%), Positives = 458/609 (75%)

Query:     7 KKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVT----VTSYGSVNGLDDKG 62
             KK  + K EQ        PS D+A+SS G SD D +++        V    S +G    G
Sbjct:   159 KKGDLSKSEQEAPKVKISPSFDDAKSSKGASDIDSEDEFYDVERSDVQDGSSSDGTGVSG 218

Query:    63 SQ-EDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQE-- 119
                  + SP    PWKEELE L+ GGVP  LRGELWQAFVGV+ RR + YYQ+LLA +  
Sbjct:   219 IPVAADASPLSTCPWKEELEVLIRGGVPMALRGELWQAFVGVRKRRCKDYYQNLLAADGS 278

Query:   120 INA--DESKEH-DN------SFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLA 170
             +N    E  +H D+      S  V  KWK QIEKD+PRTFP HPAL++DGR++LRRLL A
Sbjct:   279 VNTIEQEDMQHVDDKGSSTESIAVVEKWKGQIEKDLPRTFPGHPALDDDGRNALRRLLTA 338

Query:   171 YALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVF 230
             YA HNPSVGYCQAMNFFA LLLLLMPEENAFW  +G+IDDYF+GYY+EEMIE+QVDQLV 
Sbjct:   339 YARHNPSVGYCQAMNFFAALLLLLMPEENAFWALIGLIDDYFNGYYSEEMIESQVDQLVL 398

Query:   231 EELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLF 290
             EEL+RERFPKLVHHLDYLGVQV W++GPWFLSIF+N+LPWESVLRVWDVLL+EG RVMLF
Sbjct:   399 EELVRERFPKLVHHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGTRVMLF 458

Query:   291 RTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELR 350
             RTALALMELYGPALVTTKDAGDA+TLLQSL GSTFDSSQLV TACMGY  V E RLQELR
Sbjct:   459 RTALALMELYGPALVTTKDAGDAVTLLQSLTGSTFDSSQLVLTACMGYQNVHEIRLQELR 518

Query:   351 EKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDL 410
              KHRPAV+  +EERSKG + W+D  GLA+KLY+FK DP+ ++ ++K +      L++G L
Sbjct:   519 SKHRPAVIAALEERSKGLQAWRDSKGLASKLYNFKQDPKSVLVDSKAS------LSNGSL 572

Query:   411 SYKEP-AANLDEMLSGLSVNSELEG-RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETA 468
             S  E  ++N DE+L  L+ + E++  +DLQ QV+WLK ELC LLE+KRSA+LRAEELE A
Sbjct:   573 SRSESGSSNADEVLVSLTGDGEVDSVQDLQAQVLWLKAELCKLLEEKRSALLRAEELEIA 632

Query:   469 LMEMVKQDNRRQLSARIXXXXXXXXXXXXXXADKREQESAMIQVLMKVEQEQRITEDARR 528
             LME+VK+DNRRQLSA++              +DK+EQE AM+QVLM+VEQEQ++TEDAR 
Sbjct:   633 LMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMRVEQEQKVTEDARI 692

Query:   529 NAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRA 588
              AEQDA AQRYA  VL+EKYE+A+A++A+MEKRAVMAESMLEATLQY+SGQ KA  SPR 
Sbjct:   693 FAEQDAEAQRYAAQVLQEKYEEAVAALAEMEKRAVMAESMLEATLQYQSGQLKAQPSPRT 752

Query:   589 VHNQSSVDS 597
                Q    S
Sbjct:   753 SSKQDQFAS 761
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270856 DDB_G0270856 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MS95 TBC1D9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZT07 TBC1D9 "TBC1 domain family member 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHW7 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NY91 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P174 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4A091 Tbc1d9 "Protein Tbc1d9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1308221 Tbc1d9 "TBC1 domain family, member 9 (with GRAM domain)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.28.372.1
annotation not avaliable (715 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 4e-62
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-60
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-42
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
pfam05103131 pfam05103, DivIVA, DivIVA protein 7e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 0.001
pfam12004489 pfam12004, DUF3498, Domain of unknown function (DU 0.001
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.003
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.004
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  204 bits (521), Expect = 4e-62
 Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 14/217 (6%)

Query: 90  KDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRT 149
             LRGE+W+  +G  +   +                             ++QIEKD+PRT
Sbjct: 1   DSLRGEVWKLLLGNLSESKQRDSVSQ-----------YSKLLKLEDSPDEEQIEKDVPRT 49

Query: 150 FPAHPAL-NEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLL-MPEENAFWTFVGI 207
           FP H    N +G+  LRR+L AY+++NP VGYCQ MNF A  LLL+ + EE AFW FV +
Sbjct: 50  FPHHFFFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSL 109

Query: 208 IDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNI 267
           ++     ++       Q D  VFEEL+++  P+L  HL  LG+  +  +  WFL++F   
Sbjct: 110 LEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARE 169

Query: 268 LPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304
           LP E+VLR+WD L  EG +  LFR ALA+++ +   L
Sbjct: 170 LPLETVLRLWD-LFLEGGKFFLFRVALAILKRFRKEL 205

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498) Back     alignment and domain information
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG4347671 consensus GTPase-activating protein VRP [General f 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.96
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.96
KOG2224781 consensus Uncharacterized conserved protein, conta 99.96
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.94
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.91
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.9
KOG1091625 consensus Ypt/Rab-specific GTPase-activating prote 99.89
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.84
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.77
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.57
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 99.46
PF149611296 BROMI: Broad-minded protein 97.73
KOG1648813 consensus Uncharacterized conserved protein, conta 97.62
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 88.27
KOG12651189 consensus Phospholipase C [Lipid transport and met 83.07
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 81.64
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-50  Score=431.27  Aligned_cols=246  Identities=47%  Similarity=0.889  Sum_probs=226.6

Q ss_pred             CCCCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccccC-HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCC
Q 007091           70 PEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRT-ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPR  148 (618)
Q Consensus        70 ~~~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~-~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~R  148 (618)
                      +...++|.++||.++|+|||+++|+.||..++|...... +++|+.+++......            ..+.++|+.|+.|
T Consensus       139 ~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~~~~~~~yq~ll~~~~~~~------------~~~~~qI~~DL~R  206 (436)
T KOG2058|consen  139 PNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQLNYPGYYQELLRKGDEKK------------SPVVKQIKLDLPR  206 (436)
T ss_pred             cccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhhccCchhHHHHHhcCCCcc------------chHHHHHHhcccc
Confidence            456678999999999999999999999999999444333 889999987644221            1368999999999


Q ss_pred             CCCCC-CCCCh---hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCC-hhHHHHHHHHhHHhhccccCChhhHHH
Q 007091          149 TFPAH-PALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EENAFWTFVGIIDDYFDGYYTEEMIEA  223 (618)
Q Consensus       149 Tfp~~-~~f~~---~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-EedAFw~l~~Lm~~~l~~yf~~~~~~l  223 (618)
                      |||++ +.|..   .++..|+|||.||+++||+||||||||++||++|++|+ |++|||||+.++++|+|.||+.++.|.
T Consensus       207 TfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~  286 (436)
T KOG2058|consen  207 TFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGS  286 (436)
T ss_pred             ccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhh
Confidence            99999 78853   35799999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Q 007091          224 QVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPA  303 (618)
Q Consensus       224 ~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~  303 (618)
                      ++++.+|+.||+..+|+|+.||...+++..++++.||+|+|++.+|.++++||||++|++|.++ +|++|+|+++..++.
T Consensus       287 qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv-lfr~Alai~k~~ee~  365 (436)
T KOG2058|consen  287 QVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV-LFRVALAILKKHEEE  365 (436)
T ss_pred             hccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             hhcCCCHHHHHHHHHhccCCCCCHH
Q 007091          304 LVTTKDAGDAITLLQSLAGSTFDSS  328 (618)
Q Consensus       304 LL~~~d~~ei~~lLq~l~~~~~D~~  328 (618)
                      |+.+.+..+++.+++.+....++.+
T Consensus       366 il~~~~~~~i~~~~~~~~~~~~~~~  390 (436)
T KOG2058|consen  366 ILKEDSSKEILRVLPDLTKRSIDPD  390 (436)
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999998888777776

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 1e-25
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 5e-23
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-22
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 2e-16
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-10
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 7e-10
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-09
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-08
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 107/223 (47%), Gaps = 20/223 (8%)
Query: 80  LESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWK 139
           L +LV  GVP+ LR E+WQ   G    +       +L  + +A ES              
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXLDRYRILITKDSAQESV------------- 72
Query: 140 KQIEKDIPRTFPAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP 196
             I +DI RTFPAH    +   DG++SL ++  AY++++  +GYCQ  +F A +LLL  P
Sbjct: 73  --ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXP 130
Query: 197 EENAFWTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWI 255
           EE AF   V I  DY     Y     +        E L +E+ P L  H   L ++    
Sbjct: 131 EEQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXY 190
Query: 256 SGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALME 298
           +  WFL++F    P   V  + D+LL EG  ++ F  ALAL++
Sbjct: 191 ASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNII-FHVALALLK 232
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-93
2qq8_A334 TBC1 domain family member 14; structural genomics 9e-92
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 3e-88
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-65
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 4e-63
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 4e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-05
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
 Score =  289 bits (742), Expect = 1e-93
 Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 27/297 (9%)

Query: 78  EELESLVHGGVPKDLRGELWQAFVGVKARR-TESYYQDLLAQEINADESKEHDNSFGVPR 136
           + L +LV  GVP+ LR E+WQ   G    +     Y+ L+ +                  
Sbjct: 24  KGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITK----------------DS 67

Query: 137 KWKKQIEKDIPRTFPAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLL 193
             +  I +DI RTFPAH    +   DG++SL ++  AY++++  +GYCQ  +F A +LLL
Sbjct: 68  AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL 127

Query: 194 LMPEENAFWTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQV 252
            MPEE AF   V I+ DY     Y     +        E L++E+ P L  H   L ++ 
Sbjct: 128 HMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEA 187

Query: 253 TWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGD 312
              +  WFL++F    P   V  + D+LL EG  + +F  ALAL++     L+     G 
Sbjct: 188 HMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI-IFHVALALLKTSKEDLLQADFEGA 246

Query: 313 AITLLQSLAGSTF---DSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSK 366
                  L        ++ +L+  AC   + V   +L++  ++++      +++   
Sbjct: 247 LKFFRVQLPKRYRAEENARRLMEQACN--IKVPTKKLKKYEKEYQTMRESQLQQEDP 301
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
1pd3_A58 Nonstructural protein NS2; influenza virus A, NEP/ 84.6
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 83.35
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-49  Score=420.75  Aligned_cols=281  Identities=25%  Similarity=0.399  Sum_probs=237.4

Q ss_pred             CHHHHHHHhhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccc-------c---CCCCCCchhhHHHHHhc
Q 007091           76 WKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKE-------H---DNSFGVPRKWKKQIEKD  145 (618)
Q Consensus        76 ~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~~~~-------~---~~~~~~~e~~~~qIekD  145 (618)
                      ..++|+.++++|||+.+|+.||+.++|+.....++.|+.+++.....-....       .   ...........++|++|
T Consensus        37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I~~D  116 (334)
T 2qq8_A           37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD  116 (334)
T ss_dssp             CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------CCHHHHHHHH
T ss_pred             ChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHHHHH
Confidence            4578999999999999999999999999777778889988765431100000       0   00011124567999999


Q ss_pred             CCCCCCCCCCCCh--hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhc-cccCChhhHH
Q 007091          146 IPRTFPAHPALNE--DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIE  222 (618)
Q Consensus       146 v~RTfp~~~~f~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l-~~yf~~~~~~  222 (618)
                      |+||||++++|..  .+++.|+|||.+|+.+||++|||||||+|||+||++++|++|||||+++|+++. .+||..+..+
T Consensus       117 v~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~  196 (334)
T 2qq8_A          117 ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGL  196 (334)
T ss_dssp             HHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCHH
T ss_pred             HhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChHH
Confidence            9999999999975  468999999999999999999999999999999999999999999999999874 5788888889


Q ss_pred             HHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 007091          223 AQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGP  302 (618)
Q Consensus       223 l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~  302 (618)
                      ++..+.+|+.||+.++|+||+||.+.|+.+.+|+++||+|+|+++||++.++||||+||++|..+ +|++|+|||..+++
T Consensus       197 ~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~-l~~valaiL~~~~~  275 (334)
T 2qq8_A          197 MLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKLFED  275 (334)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988 89999999999999


Q ss_pred             HhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHHHHHHHhhc
Q 007091          303 ALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKG  367 (618)
Q Consensus       303 ~LL~~~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~~~r~~~  367 (618)
                      .|+++ |+++++.+|+++|.. +|++.++..|.......        +.|++..+.+.++++.+.
T Consensus       276 ~Ll~~-d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~--------~~k~~~~~~~~~~~~~~~  330 (334)
T 2qq8_A          276 ILTKM-DFIHMAQFLTRLPED-LPAEELFASIATIQMQS--------RNKKWAQVLTALQKDSRE  330 (334)
T ss_dssp             HHHTC-CHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEE--------TTEEHHHHHHHHHC----
T ss_pred             HHhcC-CHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcH--------HHhhHHHHHHHHHHHHHh
Confidence            99997 899999999999864 89999999998754322        255666777777766554
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-30
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-14
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (291), Expect = 1e-30
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 32/171 (18%)

Query: 77  KEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLL--AQEINADESKEHDNSFGV 134
           +++L  +   G+PK  R  +W+  +G     T+     L    +E          +    
Sbjct: 22  QQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSR 81

Query: 135 PRKWKKQIEKDIPRTFPAHPAL-NEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLL 193
                 QIE DIPRT P  P    +  ++SL+R+L  +A+ +P+ GY Q +N        
Sbjct: 82  DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFE 141

Query: 194 LMP-----------------------------EENAFWTFVGIIDDYFDGY 215
                                           E + FW    +++   D Y
Sbjct: 142 TFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.94
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.71
d1pd3a_54 Nonstructural protein ns2, Nep, M1-binding domain 84.23
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.1e-27  Score=227.19  Aligned_cols=143  Identities=23%  Similarity=0.401  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhccc--ccccCCCCCCchhhHHHHHhcCCCCC
Q 007091           73 YFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADE--SKEHDNSFGVPRKWKKQIEKDIPRTF  150 (618)
Q Consensus        73 ~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~--~~~~~~~~~~~e~~~~qIekDv~RTf  150 (618)
                      ...+.++||.++++|||+.+|+.||+.|+|+.+......+..+.........  ............+..++|++||+||+
T Consensus        18 ~~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~   97 (194)
T d1fkma1          18 TIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTN   97 (194)
T ss_dssp             SBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSS
T ss_pred             CCCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcC
Confidence            3567899999999999999999999999999764433222222111110000  00011122334567889999999999


Q ss_pred             CCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-----------------------------ChhHH
Q 007091          151 PAHPALN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-----------------------------PEENA  200 (618)
Q Consensus       151 p~~~~f~-~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-----------------------------~EedA  200 (618)
                      |++++|. +.++..|+|||.+|+.+||++|||||||+|+|+|++++                             .|++|
T Consensus        98 ~~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~  177 (194)
T d1fkma1          98 PHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT  177 (194)
T ss_dssp             TTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHH
T ss_pred             CcccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHH
Confidence            9999995 66789999999999999999999999999999999764                             17899


Q ss_pred             HHHHHHhHHhhccccC
Q 007091          201 FWTFVGIIDDYFDGYY  216 (618)
Q Consensus       201 Fw~l~~Lm~~~l~~yf  216 (618)
                      ||||+.+|+++ +++|
T Consensus       178 F~~f~~lm~~i-~d~y  192 (194)
T d1fkma1         178 FWCLTKLLEQI-TDNY  192 (194)
T ss_dssp             HHHHHHHHGGG-GGGS
T ss_pred             HHHHHHHHHhh-hccC
Confidence            99999999985 4444
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]} Back     information, alignment and structure