Citrus Sinensis ID: 007099

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MDKGWGLTLDSDHPIVSNLNFFTSNKPKPSLARFRTNRDMAASGAADSASVRMFQLPASDNSNAPSSSDDNRVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHccccccccccccccccccccccccccccHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEc
ccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEccccccccHHHEEEcccccEEEEEEEccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcc
mdkgwgltldsdhpivsnlnfftsnkpkpslarfrtnrdmaasgaadsasvrmfqlpasdnsnapsssddnrvavdevdffsddknrvsisdhreddrnkttnsvhikkenshdqlrhrtgldvntglhlltaantgsdqstvddgvssdhadekRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQqenrrapesnqahevvegkdegkkhddqvmvprqfiglgpsaetdhevsncssdeertlsgtppniveAASKehvnsngkneivsFDDQAAAAAAAENsngkrigreespesetqgwgpnnkvqklssakgidqsneATMRKARVSVrarseapmitdgcqwrkygqkmakgnpcprayyrctmavgcpvrkqvqrCAEDRTILITtyegnhnhplppaamAMASTTTAAASMLLSgsmssadgimnpnlLARAilpcsssmatisasapfptvtldlthspnplqLQRQAAQFQvqfpgqpqnlasvtntqlpqvFGQALynqskfsglqlsqnigsnsqsgshqtlppplqqpqqLADTVSAATAAITADPNFTAALAAAITSIIggaqnpfsnnsnnnnrsciiftnfffqy
mdkgwgltldsdhpivsnlnfftsnkpkpslARFRTNRDMAASGAADSASVRMFQLPASdnsnapsssddnrVAVDevdffsddknrvsisdhreddrnkttnsvhikkenshdqlrhrTGLDVNTGLHLLTaantgsdqstvdDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVvegkdegkkhddqvMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAensngkrigreespesetqgwgpnnkvqklssakgidqsneatmrkarvsvrarseapmitdgcqwrkygqKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNpfsnnsnnnnrsCIIFTNFFFQY
MDKGWGLTLDSDHPIVSNLNFFTSNKPKPSLARFRTNRDMaasgaadsasVRMFQLpasdnsnapsssddnRVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQaaaaaaaENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHplppaamamastttaaasmllsgsmssaDGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPlqlqrqaaqfqvqfPGQPQNLASVTNTQLPQVFGQALYNQSKFSGlqlsqnigsnsqsgsHQTlppplqqpqqlADTVSAATAAITADPNFtaalaaaitsiiggaQNPFsnnsnnnnRSCIIFTNFFFQY
**************IVSNLNFF*****************************************************************************************************VNTGLHLL****************************************************QVTNNYNALQMHIIAL**************************************************************************************************************************************************************MITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGN************************************PNLLARAILPCSSSMATI*****FPTVTL***********************************QLPQVFGQALYN*****************************************ATAAITADPNFTAALAAAITSIIGGAQN*********NRSCIIFTNFFF**
***GWGL*LDSD*****************************************************************VDFF*****************************************DVNTGLHLL***************************************************************************************************************************************************************************************************************************RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLP*************************************************************************************************************************************************SAATAAITADPNFTAALAAAITS***********************TNFFFQY
MDKGWGLTLDSDHPIVSNLNFFTSNKPKPSLARFRTNR*********SASVRMFQLPA************NRVAVDEVDFFSDDKNRVSIS************SVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTG****************EKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ*************************HDDQVMVPRQFIGLGPS*******************GTPPNIVEAASKEHVNSNGKNEIVSFDDQ*****************************PNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQN****************************AATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
****W*L***SDHPIVSNLN***************************************************RVAVDEVDFFSD***********************************RTGLDVNTGLHLLTAAN************SSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ******************************************************************************************************************************************MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH*L*******************************************SSM*TISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLS**********************QQLADTVSAATAAITADPNFTAALAAAITSIIGGA*************SCIIFTNFFFQ*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
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MDKGWGLTLDSDHPIVSNLNFFTSNKPKPSLARFRTNRDMAASGAADSASVRMFQLPASDNSNAPSSSDDNRVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9XEC3528 Probable WRKY transcripti yes no 0.766 0.897 0.525 1e-135
Q9C519553 WRKY transcription factor no no 0.844 0.943 0.505 1e-134
Q93WT0538 Probable WRKY transcripti no no 0.783 0.899 0.557 1e-125
Q9LXG8548 Probable WRKY transcripti no no 0.652 0.735 0.339 3e-51
Q9ZSI7489 Probable WRKY transcripti no no 0.339 0.429 0.509 1e-49
Q8VWV6480 Probable WRKY transcripti no no 0.656 0.845 0.338 4e-44
Q9CAR4387 Probable WRKY transcripti no no 0.506 0.808 0.361 8e-41
Q9C9F0374 Probable WRKY transcripti no no 0.169 0.280 0.688 3e-40
Q8S8P5519 Probable WRKY transcripti no no 0.145 0.173 0.505 2e-22
Q9C5T4310 WRKY transcription factor no no 0.184 0.367 0.426 3e-21
>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1 Back     alignment and function desciption
 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 298/567 (52%), Positives = 359/567 (63%), Gaps = 93/567 (16%)

Query: 53  MFQLPASDNSN-----APSSSDDNRVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHI 107
           MF+ P S          PS     R  V+EVDFF   + R  +S   ++     T+ VH+
Sbjct: 1   MFRFPVSLGGGPRENLKPSDEQHQRAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHV 60

Query: 108 KKENSH-DQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQV 166
           K+ENS  D    R+   +N GL+LLTA NTGSD+S VDDG+S D  +EKRTK E  QL+ 
Sbjct: 61  KRENSRVDDHDDRSTDHINIGLNLLTA-NTGSDESMVDDGLSVD-MEEKRTKCENAQLRE 118

Query: 167 ELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGK 226
           EL++ + +NQRL+ MLSQ TNN+N+LQM ++A+M+QQ+++             E  D  K
Sbjct: 119 ELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLA-------TTENNDNVK 171

Query: 227 -KHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTL--SGTPPNIVEAASKEHVNSNGK 283
            +H+   MVPRQFI LGP ++   EVS+    EERT   SG+PP+++E +S         
Sbjct: 172 NRHEVPEMVPRQFIDLGPHSD---EVSS----EERTTVRSGSPPSLLEKSSSRQ------ 218

Query: 284 NEIVSFDDQAAAAAAAENSNGKRI-GREESPESETQGWGPNNKVQKL------------- 329
                              NGKR+  REESPE+E+ GW   NKV K              
Sbjct: 219 -------------------NGKRVLVREESPETESNGWRNPNKVPKHHASSSICGGNGSE 259

Query: 330 -SSAKGIDQ-SNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTM 387
            +S+K I+Q + EATMRKARVSVRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTM
Sbjct: 260 NASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTM 319

Query: 388 AVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGS-MSSAD 446
           AVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAM MASTTTAAASMLLSGS MS+ D
Sbjct: 320 AVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQD 379

Query: 447 GIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQP 505
           G+MNP NLLAR ILPCSSSMATISASAPFPT+TLDLT S              +QF  Q 
Sbjct: 380 GLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTES---PNGNNPTNNPLMQF-SQR 435

Query: 506 QNLASVTNTQLPQVFGQALY--NQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLAD 563
             L  +  + LP + GQALY   QSKFSGL +                     QP    +
Sbjct: 436 SGLVELNQSVLPHMMGQALYYNQQSKFSGLHMP-------------------SQPLNAGE 476

Query: 564 TVSAATAAITADPNFTAALAAAITSII 590
           +VSAATAAI ++PNF AALAAAITSII
Sbjct: 477 SVSAATAAIASNPNFAAALAAAITSII 503
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1 Back     alignment and function description
>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2 Back     alignment and function description
>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1 Back     alignment and function description
>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
255554813580 WRKY transcription factor, putative [Ric 0.902 0.962 0.700 0.0
224118042578 predicted protein [Populus trichocarpa] 0.868 0.929 0.656 0.0
259121421602 WRKY transcription factor 28 [(Populus t 0.904 0.928 0.656 1e-176
225444291535 PREDICTED: WRKY transcription factor 6-l 0.834 0.964 0.587 1e-172
147779800535 hypothetical protein VITISV_002247 [Viti 0.809 0.934 0.600 1e-172
209867508556 WRKY transcription factor [Picrorhiza ku 0.849 0.944 0.565 1e-167
86155941572 putative WRKY1b transcription factor [Co 0.849 0.917 0.593 1e-164
86155943573 putative WRKY1a transcription factor [Co 0.855 0.923 0.591 1e-164
302144104510 unnamed protein product [Vitis vinifera] 0.794 0.962 0.570 1e-162
359485613593 PREDICTED: WRKY transcription factor 6-l 0.860 0.897 0.559 1e-160
>gi|255554813|ref|XP_002518444.1| WRKY transcription factor, putative [Ricinus communis] gi|223542289|gb|EEF43831.1| WRKY transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/595 (70%), Positives = 463/595 (77%), Gaps = 37/595 (6%)

Query: 1   MDKGWGLTLDSDHPIVSNL-NFFTSNKPKPSLARFRTNRDMAASGAADSASVRMFQLPAS 59
           MDKGWGLTLDSDHP+ S   N  T+NKP  S  +        AS       VRMF     
Sbjct: 1   MDKGWGLTLDSDHPVFSFFPNSATANKPADSFLKINKRNSFDASDP-----VRMFPF--- 52

Query: 60  DNSNAPSSSDDNRVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHR 119
            + N PS +DDNR+ V EVDFFS+ KN V   +H  DD   TT  + +KKENS+  +  +
Sbjct: 53  -SVNLPSPADDNRLIVGEVDFFSEKKNNVVSDNHHSDDSKTTT--ISVKKENSYADIAPK 109

Query: 120 TGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLR 179
           +  DVNTGLHLLTA NTGSDQSTVDDG SS+  D+KR+K EL QLQ++LQ+MN ENQRLR
Sbjct: 110 SN-DVNTGLHLLTA-NTGSDQSTVDDGASSE-VDDKRSKFELAQLQIDLQRMNNENQRLR 166

Query: 180 DMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFI 239
           DML+QVTNNYNALQMH++ALMQQQQ+    PE+   HEVV+GK E KKH+   +VPRQF+
Sbjct: 167 DMLTQVTNNYNALQMHLVALMQQQQQQNHGPEATHEHEVVQGKSEEKKHE---VVPRQFL 223

Query: 240 GLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAA 299
            LGPSAETD E+S+ SSD+ERT SGTP    E AS   V +NGK E+ +FD + ++    
Sbjct: 224 DLGPSAETD-EISHSSSDDERTRSGTPQTNTETAS---VKNNGKIEMSTFDQENSSF--- 276

Query: 300 ENSNGKRIGREESPESETQGWGPNNKVQKLSSA-KGIDQSNEATMRKARVSVRARSEAPM 358
              +GK IGREESPESETQGW PN KVQKL+ A KGIDQ+ EATMRKARVSVRARSEAPM
Sbjct: 277 --RDGKGIGREESPESETQGWNPN-KVQKLNPASKGIDQNAEATMRKARVSVRARSEAPM 333

Query: 359 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP 418
           ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED +ILITTYEGNHNHP
Sbjct: 334 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTSILITTYEGNHNHP 393

Query: 419 LPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVT 478
           LPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVT
Sbjct: 394 LPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVT 453

Query: 479 LDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQN 538
           LDLTHSPNPLQ+QR    FQV FPGQPQN ASVT  QLPQVFGQALYNQSKFSGLQLSQ 
Sbjct: 454 LDLTHSPNPLQVQRPPTHFQVPFPGQPQNFASVTPQQLPQVFGQALYNQSKFSGLQLSQE 513

Query: 539 IGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGA 593
           +  + Q      L P   Q   L D+VSAATAAITADPNFTAALAAAITSIIGG 
Sbjct: 514 LPQSQQ------LHP--SQQHSLVDSVSAATAAITADPNFTAALAAAITSIIGGG 560

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118042|ref|XP_002331543.1| predicted protein [Populus trichocarpa] gi|222873767|gb|EEF10898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|259121421|gb|ACV92030.1| WRKY transcription factor 28 [(Populus tomentosa x P. bolleana) x P. tomentosa] Back     alignment and taxonomy information
>gi|225444291|ref|XP_002263115.1| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147779800|emb|CAN70362.1| hypothetical protein VITISV_002247 [Vitis vinifera] Back     alignment and taxonomy information
>gi|209867508|gb|ACI90292.1| WRKY transcription factor [Picrorhiza kurrooa] Back     alignment and taxonomy information
>gi|86155941|gb|ABC86708.1| putative WRKY1b transcription factor [Coffea arabica] Back     alignment and taxonomy information
>gi|86155943|gb|ABC86709.1| putative WRKY1a transcription factor [Coffea arabica] Back     alignment and taxonomy information
>gi|302144104|emb|CBI23209.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485613|ref|XP_002269696.2| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2018052553 WRKY6 [Arabidopsis thaliana (t 0.415 0.464 0.560 5.6e-109
TAIR|locus:2120623538 WRKY31 "WRKY DNA-binding prote 0.720 0.827 0.507 3.6e-105
TAIR|locus:2137179528 WRKY42 [Arabidopsis thaliana ( 0.563 0.659 0.476 9.5e-78
TAIR|locus:2133432489 WRKY47 [Arabidopsis thaliana ( 0.263 0.333 0.523 2.7e-56
TAIR|locus:2034964480 WRKY61 "WRKY DNA-binding prote 0.491 0.633 0.335 9.5e-42
TAIR|locus:2150876548 WRKY72 "WRKY DNA-binding prote 0.498 0.562 0.327 1.4e-39
TAIR|locus:2199317374 WRKY9 "WRKY DNA-binding protei 0.181 0.299 0.610 5.1e-39
TAIR|locus:2196779387 WRKY36 "WRKY DNA-binding prote 0.377 0.602 0.338 2.9e-36
TAIR|locus:2124874310 WRKY18 "WRKY DNA-binding prote 0.187 0.374 0.410 1.3e-28
UNIPROTKB|Q6IEL0348 WRKY71 "Transcription factor W 0.169 0.301 0.447 1.1e-26
TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 733 (263.1 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
 Identities = 162/289 (56%), Positives = 178/289 (61%)

Query:   302 SNGKRIGREESPESETQGWGPNNKVQKLSSAKG--IDQSNEATMRKARVSVRARSEAPMI 359
             SNGKR+GREESPE+E+      NK+QK++S      DQ+ EATMRKARVSVRARSEAPMI
Sbjct:   258 SNGKRLGREESPETES------NKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMI 311

Query:   360 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXX 419
             +DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNH  
Sbjct:   312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPL 371

Query:   420 XXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVT 478
                                       DG+MNP NLLARA+LPCS+SMATISASAPFPTVT
Sbjct:   372 PPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVT 431

Query:   479 LDLTHSP------NPXXXXXXXXXXXXXXPGQPQNLASVTNT---QLPQVFGQALYNQSK 529
             LDLTHSP      NP                  Q    +TN     LP V GQALYNQSK
Sbjct:   432 LDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSK 491

Query:   530 FSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 578
             FSG                             ADT++A    +TADPNF
Sbjct:   492 FSGLQFSGGS----------PSTAAFSQSHAVADTITA----LTADPNF 526
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0010200 "response to chitin" evidence=IEP;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0016036 "cellular response to phosphate starvation" evidence=IMP
GO:0044212 "transcription regulatory region DNA binding" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP
GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XEC3WRK42_ARATHNo assigned EC number0.52550.76690.8977yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.166.31.1
hypothetical protein (563 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
smart0077459 smart00774, WRKY, DNA binding domain 4e-35
pfam0310660 pfam03106, WRKY, WRKY DNA -binding domain 2e-34
>gnl|CDD|214815 smart00774, WRKY, DNA binding domain Back     alignment and domain information 
 Score =  126 bits (318), Expect = 4e-35
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 361 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 417
           DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR  +D +++  TYEG H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59
>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 99.96
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 99.96
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 92.9
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 90.44
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 88.76
PRK11677134 hypothetical protein; Provisional 85.7
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 84.89
KOG4196135 consensus bZIP transcription factor MafK [Transcri 84.84
PRK13922276 rod shape-determining protein MreC; Provisional 83.94
PF06295128 DUF1043: Protein of unknown function (DUF1043); In 82.83
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 81.85
COG4026290 Uncharacterized protein containing TOPRIM domain, 80.93
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information 
Probab=99.96  E-value=3.7e-30  Score=209.37  Aligned_cols=59  Identities=66%  Similarity=1.288  Sum_probs=52.3

Q ss_pred             CCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCC
Q 007099          359 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP  418 (618)
Q Consensus       359 ~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~  418 (618)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            479999999999999999999999999996 99999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
>smart00774 WRKY DNA binding domain Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>PRK11677 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1wj2_A78 Solution Structure Of The C-Terminal Wrky Domain Of 3e-17
2ayd_A76 Crystal Structure Of The C-Terminal Wrky Domainof A 4e-17
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 350 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 409
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 66
Query: 410 TYEGNHNH 417
           TYEG HNH
Sbjct: 67  TYEGKHNH 74
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 1e-46
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 2e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76 Back     alignment and structure
 Score =  157 bits (399), Expect = 1e-46
 Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 346 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 405
           +R+ V  ++   ++ DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 406 ILITTYEGNHNHPLPPA 422
           +LITTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 99.98
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 99.97
2zxx_A79 Geminin; coiled-coil, cell cycle, coiled coil, DNA 92.44
1wlq_A83 Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z 86.48
1uii_A83 Geminin; human, DNA replication, cell cycle; 2.00A 85.63
2j5u_A255 MREC protein; bacterial cell shape determining pro 82.65
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=99.98  E-value=1.8e-33  Score=237.26  Aligned_cols=74  Identities=53%  Similarity=1.115  Sum_probs=71.5

Q ss_pred             EEEEEecCCCCCCCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCc
Q 007099          347 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  421 (618)
Q Consensus       347 rvsv~~~se~~~~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P~  421 (618)
                      ||+|++.++..+++|||+|||||||.|||+++||+|||||+ .+|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            79999999999999999999999999999999999999998 599999999999999999999999999999875
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus} Back     alignment and structure
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A* Back     alignment and structure
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1 Back     alignment and structure
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1wj2a_71 g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr 9e-34
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71 Back     information, alignment and structure

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  121 bits (304), Expect = 9e-34
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 350 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 409
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 59

Query: 410 TYEGNHNHPLP 420
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 99.97
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=3.4e-33  Score=230.62  Aligned_cols=70  Identities=59%  Similarity=1.125  Sum_probs=66.4

Q ss_pred             EEecCCCCCCCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCC
Q 007099          350 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLP  420 (618)
Q Consensus       350 v~~~se~~~~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P  420 (618)
                      |++.++.++++|||+|||||||.|||+++||+||||++ .+|+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            45678889999999999999999999999999999998 59999999999999999999999999999877