Citrus Sinensis ID: 007110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
cccEEEEcccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccEEEEEEEcccccccEEEEccEEEEEccccccccccccEEEEEcEEEccccccEEEccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEEccccccccccccccEEEEEccccEEEEEEccEEEEcccccccccEEEEEEcEEccccccEEEEEEEEEcccccccccccccccEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccccccccccccccccccHHHHHHHHcccccccEEEEccccccccccccccccEEEEEEEc
cEEEEEEEcccccEcccccccccccccEcccccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEccccccccHHccccccccccHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEccccEEEEEEEccccccEEEEEcccEEEccccEEEEccccccEEEEEEEEEccccEEEEEcccccccccEEEEccccccccccccccccHHHHHccccccccEEEEEEEEEEccccccccccccEEEEEEccccEEEEEEcccEEEEccccccccEEEEEccEEEcccccEEEEEEEEcccccccccHHccccccccEEEEEEcccccEEccccccEEEEEcccccccEEcccccccEEEEccccccccccEEEEEEEEccccccccEEEEcccccccEEEEEccccccccccEcccccccccccccccccHHccccccccccEEEEccHHHccccccEEEEEEEcccccccEEEEEEEEcEEEEEEccccccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEEEcHHHccccccccccEEEEEEEEEc
MFYIQQintcngfycdyfspnkaykpkmwteawtgwytefggpvphrpveDLAFSVAKFIQKGGSFINYYMyhggtnfgrtaggpfiatsydydapldeygllrqpkwghlKDLHRAIKLcepalvsgnptvmplgnyqeahvfKSKSACAAFLANYNQRTFAKVAfgnqhynlppwsisilpdckntvyntarvghqstqmkmtpvpihggfswqafnevpsaygdssftMSGLLEQINTTRDATDYLWYMtdvkidpsegflrsgnypvLTVMSAGHALHVFVNGqlagtaygslefpkltftegvnmRAGINKIALLSIAvglpnvgphfetwnagvlgpvtlnglnegrrdlswqkWTYKIGLEgeklnlhslsggssvewaegslvaqrqpltwyrttfsapagnaplaldmgsmgkgqvwvngqsigrhwpaykasgscgycsytgtytekkclsncgeasqrwyhvprswlkptgNLLVVFEewggnpngisLVRREIDSVCAYMYEWQPTLINWQLhasgkvnkplrpkahlmcgpgqkiksikfasfgtpegvcgsyrqgschafhsYDAFQRlcvgqnmctvtvapemfggdpcpsiMKQLAVEAICG
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
*FYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEA***
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLS************VAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAY*YEWQPT************************G*GQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLH***KVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
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MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9SCW1847 Beta-galactosidase 1 OS=A yes no 0.988 0.721 0.831 0.0
P48980835 Beta-galactosidase OS=Sol N/A no 0.985 0.729 0.789 0.0
P45582832 Beta-galactosidase OS=Asp N/A no 0.969 0.719 0.707 0.0
Q8W0A1827 Beta-galactosidase 2 OS=O yes no 0.970 0.725 0.681 0.0
Q9SCV9856 Beta-galactosidase 3 OS=A no no 0.985 0.711 0.620 0.0
Q10RB4841 Beta-galactosidase 5 OS=O no no 0.983 0.722 0.624 0.0
P48981731 Beta-galactosidase OS=Mal N/A no 0.800 0.677 0.714 0.0
Q9SCV0728 Beta-galactosidase 12 OS= no no 0.800 0.679 0.692 0.0
Q9LFA6727 Beta-galactosidase 2 OS=A no no 0.799 0.679 0.646 0.0
Q9SCV8724 Beta-galactosidase 4 OS=A no no 0.797 0.680 0.662 0.0
>sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1087 bits (2812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/612 (83%), Positives = 569/612 (92%), Gaps = 1/612 (0%)

Query: 7   INTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSF 66
           IN CNGFYCDYFSPNKAYKPKMWTEAWTGW+T+FGGPVP+RP ED+AFSVA+FIQKGGSF
Sbjct: 235 INACNGFYCDYFSPNKAYKPKMWTEAWTGWFTKFGGPVPYRPAEDMAFSVARFIQKGGSF 294

Query: 67  INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 126
           INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGL RQPKWGHLKDLHRAIKLCEPALV
Sbjct: 295 INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLERQPKWGHLKDLHRAIKLCEPALV 354

Query: 127 SGNPTVMPLGNYQEAHVFKSKS-ACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDC 185
           SG PT MPLGNYQEAHV+KSKS AC+AFLANYN +++AKV+FGN HYNLPPWSISILPDC
Sbjct: 355 SGEPTRMPLGNYQEAHVYKSKSGACSAFLANYNPKSYAKVSFGNNHYNLPPWSISILPDC 414

Query: 186 KNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDA 245
           KNTVYNTARVG Q+++MKM  VP+HGG SWQA+NE PS Y D SFTM GL+EQINTTRD 
Sbjct: 415 KNTVYNTARVGAQTSRMKMVRVPVHGGLSWQAYNEDPSTYIDESFTMVGLVEQINTTRDT 474

Query: 246 TDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFT 305
           +DYLWYMTDVK+D +EGFLR+G+ P LTV+SAGHA+HVF+NGQL+G+AYGSL+ PKLTF 
Sbjct: 475 SDYLWYMTDVKVDANEGFLRNGDLPTLTVLSAGHAMHVFINGQLSGSAYGSLDSPKLTFR 534

Query: 306 EGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKI 365
           +GVN+RAG NKIA+LSIAVGLPNVGPHFETWNAGVLGPV+LNGLN GRRDLSWQKWTYK+
Sbjct: 535 KGVNLRAGFNKIAILSIAVGLPNVGPHFETWNAGVLGPVSLNGLNGGRRDLSWQKWTYKV 594

Query: 366 GLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQV 425
           GL+GE L+LHSLSG SSVEWAEG+ VAQ+QPLTWY+TTFSAPAG++PLA+DMGSMGKGQ+
Sbjct: 595 GLKGESLSLHSLSGSSSVEWAEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQI 654

Query: 426 WVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLL 485
           W+NGQS+GRHWPAYKA GSC  CSYTGT+ E KCL NCGEASQRWYHVPRSWLKP+GNLL
Sbjct: 655 WINGQSLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLL 714

Query: 486 VVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPG 545
           VVFEEWGG+PNGI+LVRRE+DSVCA +YEWQ TL+N+QLHASGKVNKPL PKAHL CGPG
Sbjct: 715 VVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLVNYQLHASGKVNKPLHPKAHLQCGPG 774

Query: 546 QKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCP 605
           QKI ++KFASFGTPEG CGSYRQGSCHA HSYDAF +LCVGQN C+VTVAPEMFGGDPCP
Sbjct: 775 QKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCP 834

Query: 606 SIMKQLAVEAIC 617
           ++MK+LAVEA+C
Sbjct: 835 NVMKKLAVEAVC 846

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|P48980|BGAL_SOLLC Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1 Back     alignment and function description
>sp|P45582|BGAL_ASPOF Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1 Back     alignment and function description
>sp|Q8W0A1|BGAL2_ORYSJ Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1 Back     alignment and function description
>sp|Q9SCV9|BGAL3_ARATH Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1 Back     alignment and function description
>sp|Q10RB4|BGAL5_ORYSJ Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1 Back     alignment and function description
>sp|P48981|BGAL_MALDO Beta-galactosidase OS=Malus domestica PE=1 SV=1 Back     alignment and function description
>sp|Q9SCV0|BGA12_ARATH Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=2 Back     alignment and function description
>sp|Q9SCV8|BGAL4_ARATH Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
224134551 839 predicted protein [Populus trichocarpa] 0.988 0.728 0.866 0.0
118488890 846 unknown [Populus trichocarpa x Populus d 0.988 0.722 0.866 0.0
224128630 830 predicted protein [Populus trichocarpa] 0.988 0.736 0.849 0.0
14970839 843 beta-galactosidase [Fragaria x ananassa] 0.988 0.724 0.834 0.0
255572957 845 beta-galactosidase, putative [Ricinus co 0.988 0.723 0.846 0.0
15231354 847 beta galactosidase 1 [Arabidopsis thalia 0.988 0.721 0.831 0.0
20260596 847 galactosidase, putative [Arabidopsis tha 0.988 0.721 0.830 0.0
157313304 841 beta-galactosidase protein 2 [Prunus per 0.988 0.726 0.841 0.0
222424922625 AT3G13750 [Arabidopsis thaliana] 0.988 0.977 0.831 0.0
297829920 847 hypothetical protein ARALYDRAFT_897617 [ 0.988 0.721 0.826 0.0
>gi|224134551|ref|XP_002327432.1| predicted protein [Populus trichocarpa] gi|222835986|gb|EEE74407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/612 (86%), Positives = 578/612 (94%), Gaps = 1/612 (0%)

Query: 7   INTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSF 66
           INTCNGFYCDYFSPNKAYKPKMWTEAWTGW+T+FGGPVPHRP ED+AFSVA+FIQKGGSF
Sbjct: 227 INTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTQFGGPVPHRPAEDMAFSVARFIQKGGSF 286

Query: 67  INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 126
           INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV
Sbjct: 287 INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 346

Query: 127 SGNPTVMPLGNYQEAHVFKSKSA-CAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDC 185
           SG+ TV+PLGNYQEAHVF  K+  CAAFLANY+QR+FAKV+F N HYNLPPWSISILPDC
Sbjct: 347 SGDATVIPLGNYQEAHVFNYKAGGCAAFLANYHQRSFAKVSFRNMHYNLPPWSISILPDC 406

Query: 186 KNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDA 245
           KNTVYNTARVG QS +MKMTPVP+HGGFSWQA+NE PSA GDS+FTM GLLEQINTTRD 
Sbjct: 407 KNTVYNTARVGAQSARMKMTPVPMHGGFSWQAYNEEPSASGDSTFTMVGLLEQINTTRDV 466

Query: 246 TDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFT 305
           +DYLWYMTDV IDPSEGFLRSG YPVL V+SAGHALHVF+NGQL+GTAYGSL+FPKLTFT
Sbjct: 467 SDYLWYMTDVHIDPSEGFLRSGKYPVLGVLSAGHALHVFINGQLSGTAYGSLDFPKLTFT 526

Query: 306 EGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKI 365
           +GV +RAG+NKI+LLSIAVGLPNVGPHFETWNAG+LGPVTLNGLNEGRRDLSWQKW+YKI
Sbjct: 527 QGVKLRAGVNKISLLSIAVGLPNVGPHFETWNAGILGPVTLNGLNEGRRDLSWQKWSYKI 586

Query: 366 GLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQV 425
           GL GE L LHS+SG SSVEWAEGSLVAQRQPL+WY+TTF+APAGN+PLALDMGSMGKGQ+
Sbjct: 587 GLHGEALGLHSISGSSSVEWAEGSLVAQRQPLSWYKTTFNAPAGNSPLALDMGSMGKGQI 646

Query: 426 WVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLL 485
           W+NGQ +GRHWPAYKASG+CG CSY GTY EKKC +NCGEASQRWYHVP+SWLKPTGNLL
Sbjct: 647 WINGQHVGRHWPAYKASGTCGDCSYIGTYNEKKCSTNCGEASQRWYHVPQSWLKPTGNLL 706

Query: 486 VVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPG 545
           VVFEEWGG+PNGISLVRR++DSVCA +YEWQPTL+N+Q+ ASGKVNKPLRPKAHL CGPG
Sbjct: 707 VVFEEWGGDPNGISLVRRDVDSVCADIYEWQPTLMNYQMQASGKVNKPLRPKAHLSCGPG 766

Query: 546 QKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCP 605
           QKI+SIKFASFGTPEGVCGSYRQGSCHAFHSYDAF  LCVGQN C+VTVAPEMFGGDPC 
Sbjct: 767 QKIRSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFNNLCVGQNSCSVTVAPEMFGGDPCL 826

Query: 606 SIMKQLAVEAIC 617
           ++MK+LAVEAIC
Sbjct: 827 NVMKKLAVEAIC 838

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118488890|gb|ABK96254.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224128630|ref|XP_002329051.1| predicted protein [Populus trichocarpa] gi|222839722|gb|EEE78045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|14970839|emb|CAC44500.1| beta-galactosidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|255572957|ref|XP_002527409.1| beta-galactosidase, putative [Ricinus communis] gi|223533219|gb|EEF34975.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15231354|ref|NP_187988.1| beta galactosidase 1 [Arabidopsis thaliana] gi|75274602|sp|Q9SCW1.1|BGAL1_ARATH RecName: Full=Beta-galactosidase 1; Short=Lactase 1; Flags: Precursor gi|6686874|emb|CAB64737.1| putative beta-galactosidase [Arabidopsis thaliana] gi|9294020|dbj|BAB01923.1| beta-galactosidase [Arabidopsis thaliana] gi|332641886|gb|AEE75407.1| beta galactosidase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20260596|gb|AAM13196.1| galactosidase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|157313304|gb|ABV32545.1| beta-galactosidase protein 2 [Prunus persica] Back     alignment and taxonomy information
>gi|222424922|dbj|BAH20412.1| AT3G13750 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297829920|ref|XP_002882842.1| hypothetical protein ARALYDRAFT_897617 [Arabidopsis lyrata subsp. lyrata] gi|297328682|gb|EFH59101.1| hypothetical protein ARALYDRAFT_897617 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2091496847 BGAL1 "beta galactosidase 1" [ 0.988 0.721 0.831 3.5e-304
TAIR|locus:2115310856 BGAL3 "beta-galactosidase 3" [ 0.985 0.711 0.620 2.7e-226
TAIR|locus:2120830728 BGAL12 "beta-galactosidase 12" 0.800 0.679 0.692 1.5e-200
TAIR|locus:2085131727 BGAL2 "beta-galactosidase 2" [ 0.799 0.679 0.646 2.3e-188
TAIR|locus:2170282724 BGAL4 "beta-galactosidase 4" [ 0.797 0.680 0.662 1e-187
TAIR|locus:2028265732 BGAL5 "beta-galactosidase 5" [ 0.802 0.677 0.643 1.7e-185
TAIR|locus:2056623852 BGAL8 "beta-galactosidase 8" [ 0.974 0.706 0.504 1.8e-165
TAIR|locus:2046452887 BGAL9 "beta galactosidase 9" [ 0.750 0.523 0.389 2e-162
TAIR|locus:2163951741 BGAL10 "beta-galactosidase 10" 0.810 0.676 0.511 8.6e-143
TAIR|locus:2180439826 BGAL7 "beta-galactosidase 7" [ 0.944 0.707 0.430 2.2e-130
TAIR|locus:2091496 BGAL1 "beta galactosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2919 (1032.6 bits), Expect = 3.5e-304, P = 3.5e-304
 Identities = 509/612 (83%), Positives = 569/612 (92%)

Query:     7 INTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSF 66
             IN CNGFYCDYFSPNKAYKPKMWTEAWTGW+T+FGGPVP+RP ED+AFSVA+FIQKGGSF
Sbjct:   235 INACNGFYCDYFSPNKAYKPKMWTEAWTGWFTKFGGPVPYRPAEDMAFSVARFIQKGGSF 294

Query:    67 INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 126
             INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGL RQPKWGHLKDLHRAIKLCEPALV
Sbjct:   295 INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLERQPKWGHLKDLHRAIKLCEPALV 354

Query:   127 SGNPTVMPLGNYQEAHVFKSKS-ACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDC 185
             SG PT MPLGNYQEAHV+KSKS AC+AFLANYN +++AKV+FGN HYNLPPWSISILPDC
Sbjct:   355 SGEPTRMPLGNYQEAHVYKSKSGACSAFLANYNPKSYAKVSFGNNHYNLPPWSISILPDC 414

Query:   186 KNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDA 245
             KNTVYNTARVG Q+++MKM  VP+HGG SWQA+NE PS Y D SFTM GL+EQINTTRD 
Sbjct:   415 KNTVYNTARVGAQTSRMKMVRVPVHGGLSWQAYNEDPSTYIDESFTMVGLVEQINTTRDT 474

Query:   246 TDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFT 305
             +DYLWYMTDVK+D +EGFLR+G+ P LTV+SAGHA+HVF+NGQL+G+AYGSL+ PKLTF 
Sbjct:   475 SDYLWYMTDVKVDANEGFLRNGDLPTLTVLSAGHAMHVFINGQLSGSAYGSLDSPKLTFR 534

Query:   306 EGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKI 365
             +GVN+RAG NKIA+LSIAVGLPNVGPHFETWNAGVLGPV+LNGLN GRRDLSWQKWTYK+
Sbjct:   535 KGVNLRAGFNKIAILSIAVGLPNVGPHFETWNAGVLGPVSLNGLNGGRRDLSWQKWTYKV 594

Query:   366 GLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQV 425
             GL+GE L+LHSLSG SSVEWAEG+ VAQ+QPLTWY+TTFSAPAG++PLA+DMGSMGKGQ+
Sbjct:   595 GLKGESLSLHSLSGSSSVEWAEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQI 654

Query:   426 WVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLL 485
             W+NGQS+GRHWPAYKA GSC  CSYTGT+ E KCL NCGEASQRWYHVPRSWLKP+GNLL
Sbjct:   655 WINGQSLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLL 714

Query:   486 VVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPG 545
             VVFEEWGG+PNGI+LVRRE+DSVCA +YEWQ TL+N+QLHASGKVNKPL PKAHL CGPG
Sbjct:   715 VVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLVNYQLHASGKVNKPLHPKAHLQCGPG 774

Query:   546 QKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCP 605
             QKI ++KFASFGTPEG CGSYRQGSCHA HSYDAF +LCVGQN C+VTVAPEMFGGDPCP
Sbjct:   775 QKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCP 834

Query:   606 SIMKQLAVEAIC 617
             ++MK+LAVEA+C
Sbjct:   835 NVMKKLAVEAVC 846
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004565 "beta-galactosidase activity" evidence=ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2115310 BGAL3 "beta-galactosidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120830 BGAL12 "beta-galactosidase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085131 BGAL2 "beta-galactosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170282 BGAL4 "beta-galactosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028265 BGAL5 "beta-galactosidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056623 BGAL8 "beta-galactosidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046452 BGAL9 "beta galactosidase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163951 BGAL10 "beta-galactosidase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180439 BGAL7 "beta-galactosidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SCW1BGAL1_ARATH3, ., 2, ., 1, ., 2, 30.83160.98860.7213yesno
Q8W0A1BGAL2_ORYSJ3, ., 2, ., 1, ., 2, 30.68180.97080.7255yesno
P45582BGAL_ASPOF3, ., 2, ., 1, ., 2, 30.70770.96920.7199N/Ano
P48981BGAL_MALDO3, ., 2, ., 1, ., 2, 30.71480.80090.6771N/Ano
P48980BGAL_SOLLC3, ., 2, ., 1, ., 2, 30.78920.98540.7293N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.230.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_44000028
hypothetical protein (839 aa)
(Populus trichocarpa)
Predicted Functional Partners:
POPTRKOR1
endo-1,4-beta-glucanase (619 aa)
      • 0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
PLN03059840 PLN03059, PLN03059, beta-galactosidase; Provisiona 0.0
pfam01301318 pfam01301, Glyco_hydro_35, Glycosyl hydrolases fam 6e-50
pfam0214079 pfam02140, Gal_Lectin, Galactose binding lectin do 8e-20
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional Back     alignment and domain information 
 Score = 1024 bits (2650), Expect = 0.0
 Identities = 458/612 (74%), Positives = 520/612 (84%), Gaps = 4/612 (0%)

Query: 7   INTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSF 66
           I+TCNGFYC+ F PNK YKPKMWTEAWTGWYTEFGG VP+RP EDLAFSVA+FIQ GGSF
Sbjct: 231 IDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSF 290

Query: 67  INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALV 126
           INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGL R+PKWGHL+DLH+AIKLCEPALV
Sbjct: 291 INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALV 350

Query: 127 SGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCK 186
           S +PTV  LG+ QEAHVFKSKSACAAFLANY+ +   KV FGN  Y+LPPWS+SILPDCK
Sbjct: 351 SVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCK 410

Query: 187 NTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNE-VPSAYGDSSFTMSGLLEQINTTRDA 245
             V+NTAR+G QS+QMKM PV     FSWQ++NE   SAY D + TM GL EQIN TRDA
Sbjct: 411 TAVFNTARLGAQSSQMKMNPVG--STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDA 468

Query: 246 TDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFT 305
           TDYLWYMT+V IDP EGFL++G YPVLT+ SAGHALHVF+NGQLAGT YG L  PKLTF+
Sbjct: 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFS 528

Query: 306 EGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKI 365
           + V +  GINKI+LLS+AVGLPNVG HFETWNAGVLGPVTL GLNEG RDLS  KW+YKI
Sbjct: 529 QNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKI 588

Query: 366 GLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQV 425
           GL+GE L+LH+++G SSVEW EGSL+AQ+QPLTWY+TTF AP GN PLALDM SMGKGQ+
Sbjct: 589 GLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQI 648

Query: 426 WVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLL 485
           W+NGQSIGRHWPAY A GSC  C+Y GT+ +KKC +NCGE SQRWYHVPRSWLKP+GNLL
Sbjct: 649 WINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLL 708

Query: 486 VVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPG 545
           +VFEEWGGNP GISLV+R  DSVCA ++E QP L NWQ+ ASGKVN   +PKAHL C PG
Sbjct: 709 IVFEEWGGNPAGISLVKRTTDSVCADIFEGQPALKNWQIIASGKVNSL-QPKAHLWCPPG 767

Query: 546 QKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCP 605
           QKI  IKFASFG P+G CGS+R+GSCHA  SYDAF+R C+G+  C+VTVAPE+FGGDPCP
Sbjct: 768 QKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCP 827

Query: 606 SIMKQLAVEAIC 617
             MK+L+VEA+C
Sbjct: 828 DSMKKLSVEAVC 839

Length = 840
>gnl|CDD|216423 pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35 Back     alignment and domain information
>gnl|CDD|216897 pfam02140, Gal_Lectin, Galactose binding lectin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
PLN03059840 beta-galactosidase; Provisional 100.0
KOG0496649 consensus Beta-galactosidase [Carbohydrate transpo 100.0
PF01301319 Glyco_hydro_35: Glycosyl hydrolases family 35; Int 99.95
PF0214080 Gal_Lectin: Galactose binding lectin domain; Inter 99.8
KOG4729 265 consensus Galactoside-binding lectin [General func 99.76
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 99.06
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 98.68
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 98.4
COG1874673 LacA Beta-galactosidase [Carbohydrate transport an 97.18
PRK10150 604 beta-D-glucuronidase; Provisional 97.07
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 96.94
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 96.81
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 96.54
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 94.26
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 92.9
PRK10150 604 beta-D-glucuronidase; Provisional 92.4
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 85.36
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-160  Score=1352.16  Aligned_cols=610  Identities=73%  Similarity=1.311  Sum_probs=561.5

Q ss_pred             cceeccCCcccCccCCCCCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeeccCCCCCCCCC
Q 007110            5 QQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGG   84 (618)
Q Consensus         5 ~~i~tcn~~~~~~~~~~~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~   84 (618)
                      +||+||||++|+.|.+.++.+|+||||||+|||+|||++++.|+++|++.++++||++|+|++|||||||||||||||||
T Consensus       229 ~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga  308 (840)
T PLN03059        229 PVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGG  308 (840)
T ss_pred             cceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCC
Confidence            68999999999999998888999999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCccccccCCCCcccCCCCCChhHHHHHHHHHHHHhccccccCCCCcccCCCCcceeeeeccccchhhhhhccccccceE
Q 007110           85 PFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAK  164 (618)
Q Consensus        85 ~~~~TSYDY~Apl~E~G~~~~~Ky~~lr~~~~~i~~~~~~l~~~~p~~~~l~~~~~~~~Y~~~~~~~~fl~n~~~~~~~~  164 (618)
                      ++++|||||||||+|+|++|+|||.+||++|++++.++++|+..+|....||+++++++|+..+.|+||+.|++++.+.+
T Consensus       309 ~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~  388 (840)
T PLN03059        309 PFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVK  388 (840)
T ss_pred             CccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCcee
Confidence            99999999999999999996579999999999999999888888888889999999999985548999999999889999


Q ss_pred             EEeCCccccCCCcceeecCCCCccccccceeccccccccccccCCCCCCCcccccCC-CccCCCCCcccCchhhhhcCCC
Q 007110          165 VAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTR  243 (618)
Q Consensus       165 v~~~~~~~~lp~~sv~il~d~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~  243 (618)
                      |.|+|++|.||+|||||||||+++||||+++++|++.+++.+..  ..+.|+++.|+ .+...+.+++...++||+++|+
T Consensus       389 v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~--~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~  466 (840)
T PLN03059        389 VTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVG--STFSWQSYNEETASAYTDDTTTMDGLWEQINVTR  466 (840)
T ss_pred             EEECCcccccCccceeecccccceeeeccccccccceeeccccc--ccccceeecccccccccCCCcchhhHHHhhcccC
Confidence            99999999999999999999999999999999998777554433  56699999999 4444566788889999999999


Q ss_pred             CCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEEe
Q 007110          244 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIA  323 (618)
Q Consensus       244 d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~~l~~g~n~L~ILven  323 (618)
                      |.+||+||||+|....++..++.+.+++|+|.+++|++||||||+++|+.++......+.++.+++++.|.|+|+|||||
T Consensus       467 d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~  546 (840)
T PLN03059        467 DATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVA  546 (840)
T ss_pred             CCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEe
Confidence            99999999999988766655567778899999999999999999999999997766678888778888999999999999


Q ss_pred             cCCccccCCCCcccceeeccEEEccccCCcccCccCCcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEE
Q 007110          324 VGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTT  403 (618)
Q Consensus       324 ~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~~L~~~~W~~~~~L~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~wYr~~  403 (618)
                      |||+|||++|+++.|||+|+|+|++.++++++|+++.|.|+++|.||.++++.+++...++|...+..+..++|+|||++
T Consensus       547 vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~  626 (840)
T PLN03059        547 VGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTT  626 (840)
T ss_pred             CCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEE
Confidence            99999999999999999999999998888889998889999999999999987755567889776444445679999999


Q ss_pred             EECCCCCCCeEEeeCCcceEEEEECCeeccccccccc-cCCCCCccccccccccccccCCCCCCceeEEecCCCcccCCC
Q 007110          404 FSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYK-ASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTG  482 (618)
Q Consensus       404 F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~-~~G~~~~c~~~G~~~~~~~~~~cg~PQqtlYhVP~~~Lk~g~  482 (618)
                      |++|++.|||||||++||||+|||||+||||||+.+. ..|| +.|||+|.|++.||+||||+|||+|||||++|||+|+
T Consensus       627 Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~  705 (840)
T PLN03059        627 FDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSG  705 (840)
T ss_pred             EeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCC
Confidence            9999999999999999999999999999999997643 2566 8899999999999999999999999999999999999


Q ss_pred             ceEEEEEecCCCCCceEEEeecchhhcccccccCccccccccccCCCCCCCCCCceEEecCCCCeEEEEeeeccCCCCCC
Q 007110          483 NLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGV  562 (618)
Q Consensus       483 N~ivifEe~g~~p~~i~~~~~~~~~~c~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~L~C~~G~~I~~I~~A~yGr~~~~  562 (618)
                      |+||||||+|++|..|+|.++.++++|++++|.|| +|++|++.+....+...+.++|+||.|++|++|+||+||||.++
T Consensus       706 N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gt  784 (840)
T PLN03059        706 NLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGT  784 (840)
T ss_pred             ceEEEEEecCCCCCceEEEEeecCcccccccccCC-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCC
Confidence            99999999999999999999999999999999995 69999996554434678899999999999988999999999999


Q ss_pred             CCCccCCceecCChHHHHHhhcCCCCcceEEecCCCCCCCCCCCCceeEEEEEEeC
Q 007110          563 CGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG  618 (618)
Q Consensus       563 C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~v~y~C~  618 (618)
                      |+++++++|++++|+++|+++|+||++|+|.|++.+||+|||+||+|||+|+|.|+
T Consensus       785 C~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs  840 (840)
T PLN03059        785 CGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS  840 (840)
T ss_pred             CCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence            99999999999999999999999999999999999997799999999999999996

>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [] Back     alignment and domain information
>KOG4729 consensus Galactoside-binding lectin [General function prediction only] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 1e-09
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 2e-05
3thc_A654 Crystal Structure Of Human Beta-Galactosidase In Co 4e-09
3d3a_A612 Crystal Structure Of A Beta-Galactosidase From Bact 2e-07
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 16  DYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGG 75
           ++F  +    P M  E W GW+  +  P+  R  ++LA +V + +++G   IN YM+HGG
Sbjct: 223 EFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGG 280
Query: 76  TNFGR----TAGGPFI---ATSYDYDAPLDEYG 101
           TNFG     +A G       TSYDYDA LDE G
Sbjct: 281 TNFGFMNGCSARGTLDLPQVTSYDYDALLDEEG 313
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex With Galactose Length = 654 Back     alignment and structure
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron Length = 612 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 7e-77
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 1e-08
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 7e-60
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 5e-10
3d3a_A612 Beta-galactosidase; protein structure initiative I 1e-46
3d3a_A612 Beta-galactosidase; protein structure initiative I 6e-44
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 1e-43
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 3e-32
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 9e-40
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 3e-32
2jx9_A106 Latrophilin 1; lectin, beta-sandwich, disulphide, 1e-21
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 2e-15
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 3e-15
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
 Score =  263 bits (672), Expect = 7e-77
 Identities = 97/601 (16%), Positives = 170/601 (28%), Gaps = 117/601 (19%)

Query: 7   INTCNGFYCDYFSPNKAY-------------------------KPKMWTEAWTGWYTEFG 41
           + + + +  D +                                P    E   G +  FG
Sbjct: 229 LGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFG 288

Query: 42  GPVPHRPVEDLAFSVAKFIQK-----GGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAP 96
           G    +    +     +   K     G +  N YM  GGTN+G   G P   TSYDY A 
Sbjct: 289 GWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSYDYGAS 347

Query: 97  LDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAH-----VFKSKSACA 151
           + E   + + K+  LK   + +K+  P  ++  P     G Y ++         +K +  
Sbjct: 348 IREDRRIDREKYSELKLQGQFLKVS-PGYITATPENATQGVYSDSQNIVITPLLAKESGD 406

Query: 152 AFLANYNQRTF-------AKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKM 204
            F+  +   +         K+        +P    S+    +++  +          +  
Sbjct: 407 FFVVRHANYSSTDTASYTVKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLY 466

Query: 205 TPVPIHGGFSWQAFNE-----------------VPSAYGDSSFTMSGLLEQINTTRDATD 247
           +   I    +W  F E                 V + +G S    +  +E  N T   T 
Sbjct: 467 STAEIF---TWNEFAEKTVLVLYGGAQELHEFAVKNPFGSSKTAKAKKIEGSNVTIHTTS 523

Query: 248 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEG 307
            L  +       +   ++ G+  +  ++    A + +    L G+   S     L   + 
Sbjct: 524 NLTVVLQWTASSARQVVQLGSLVIY-MVDRNSAYN-YWVPTLPGSGKQSAYGSSLMNPDS 581

Query: 308 VN------MRAGINKIALLSIAVGLPNVGPHFETWNA-GVLGPVTLNGLNEGRRDLSWQK 360
           V       +R+   K   LS+     NV    E       +  + +NG   G        
Sbjct: 582 VIINGGYLIRSVAIKGNALSV-QADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGD 640

Query: 361 WTYKIGLEGEKLNLHSLS---------------GGSSVEWAEGSLVAQRQPL-------- 397
           W     +E   + +  L+                     W   +L               
Sbjct: 641 WIAHPAIEIPHVQVPELTKLKWYKVDSLPEIRSNYDDSRWPLANLRTSNNTYAPLKTPVS 700

Query: 398 ------------TWYRTTFSAPAGNAPLALDM--GSMGKGQVWVNGQSIGRH-----WPA 438
                         +R  F+A      L L    GS     VW+N + IG         A
Sbjct: 701 LYGSDYGFHAGTLLFRGRFTARTARQQLFLSTQGGSAFASSVWLNDRFIGSFTGFDAASA 760

Query: 439 YKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGI 498
             +S +         Y     + + G   + W     S   P G L        G    I
Sbjct: 761 ANSSYTLDRLVRGRRYILTVVVDSTG-LDENWTTGDDSMKAPRGILDYALTSSSGANVSI 819

Query: 499 S 499
           S
Sbjct: 820 S 820
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Length = 595 Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Length = 595 Back     alignment and structure
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A* Length = 106 Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Length = 195 Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Length = 195 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 100.0
3d3a_A612 Beta-galactosidase; protein structure initiative I 100.0
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 100.0
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
2jx9_A106 Latrophilin 1; lectin, beta-sandwich, disulphide, 99.89
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 99.83
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 99.82
3fn9_A 692 Putative beta-galactosidase; structural genomics, 97.45
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 97.39
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 97.31
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 97.29
3cmg_A 667 Putative beta-galactosidase; structural genomics, 97.17
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 97.03
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 96.73
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 96.59
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 96.56
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 96.45
3fn9_A 692 Putative beta-galactosidase; structural genomics, 95.79
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 95.76
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 95.53
1kwg_A645 Beta-galactosidase; TIM barrel, glycoside hydrolas 95.34
3cmg_A 667 Putative beta-galactosidase; structural genomics, 95.27
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 94.94
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 94.83
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 94.83
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 94.55
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 94.46
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 94.07
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 93.97
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 93.82
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 93.32
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 92.1
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 87.41
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 82.46
3cih_A 739 Putative alpha-rhamnosidase; structural genomics, 81.99
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
Probab=100.00  E-value=3.7e-86  Score=735.99  Aligned_cols=363  Identities=28%  Similarity=0.481  Sum_probs=282.2

Q ss_pred             cceeccC-Cccc-Ccc------CCCCCCC-CeeeeEeccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEeecc
Q 007110            5 QQINTCN-GFYC-DYF------SPNKAYK-PKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGG   75 (618)
Q Consensus         5 ~~i~tcn-~~~~-~~~------~~~~p~~-P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGG   75 (618)
                      .+++||| |.+| +.|      .+.+|++ |+|+||||+||||+||++++.+++++++.+++++|+.| | +||||||||
T Consensus       203 ~~~~t~nfg~~~~~~~~~~~~~~~~~p~~~P~~~~Ef~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g-s-~N~YM~hGG  280 (595)
T 4e8d_A          203 DLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQG-S-INLYMFHGG  280 (595)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCBTTSCCCCCCHHHHHHHHHHHHHHS-E-EEEEEEECC
T ss_pred             CeEEEeeCCCchhHhHHHHHHhhhcCCCCCCeEEEeeccccccccCCCCCCCCHHHHHHHHHHHHHcC-C-ceEEecccc
Confidence            4789999 8888 333      3556998 99999999999999999999999999999999999999 6 799999999


Q ss_pred             CCCCCCCCCCC-------ccccccCCCCcccCCCCCChhHHHHHHHHHHHHhccccccCCCCcccCCCCcceeeeecccc
Q 007110           76 TNFGRTAGGPF-------IATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKS  148 (618)
Q Consensus        76 TNfG~~~G~~~-------~~TSYDY~Apl~E~G~~~~~Ky~~lr~~~~~i~~~~~~l~~~~p~~~~l~~~~~~~~Y~~~~  148 (618)
                      |||||||||++       ++|||||||||+|+|++ ||||.+||++++.+.. ..+++  +|.      ..++..|+.. 
T Consensus       281 TNfG~~~Ga~~~~~~~~p~~TSYDYdApi~E~G~~-t~Ky~~lr~~i~~~~~-~~p~~--~P~------~~~~~~~~~v-  349 (595)
T 4e8d_A          281 TNFGFMNGCSARGTLDLPQVTSYDYDALLDEEGNP-TAKYLAVKKMMATHFS-EYPQL--EPL------YKESMELDAI-  349 (595)
T ss_dssp             BCCTTCBCEEEETTEEEEBCSBCCTTCSBCTTSCB-CHHHHHHHHHHHHHCT-TSCCC--CCC------CCCBCCEEEE-
T ss_pred             cCcccccCCCCCCCCCCCCCCccCCCCccCcCCCc-cHHHHHHHHHHHHhCC-CCCCC--CCC------CCcccccceE-
Confidence            99999999852       57999999999999999 6999999999876521 11111  121      1234444422 


Q ss_pred             chhhhhhccccccceEEEeCCccccCCCcceeecCCCCccccccceeccccccccccccCCCCCCCcccccCCCccCCCC
Q 007110          149 ACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEVPSAYGDS  228 (618)
Q Consensus       149 ~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~d~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~  228 (618)
                                       .+..        .+++        |++.                      +.+.+++.+    
T Consensus       350 -----------------~l~~--------~~~L--------~~~l----------------------~~l~~~~~s----  370 (595)
T 4e8d_A          350 -----------------PLVE--------KVSL--------FETL----------------------DSLSSPVES----  370 (595)
T ss_dssp             -----------------EEEE--------EEEH--------HHHH----------------------HHHCCCEEE----
T ss_pred             -----------------Eecc--------cccH--------HHhh----------------------hhcCCcccc----
Confidence                             1110        1111        1111                      011223222    


Q ss_pred             CcccCchhhhhcCCCCCcceEEEEEEecCCCCCccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeee
Q 007110          229 SFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGV  308 (618)
Q Consensus       229 ~~~~~~~~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfvnG~~vGt~~~~~~~~~~~~~~~~  308 (618)
                        ..|++||+|+|   .+||+||||++......        ..|++.+++|||+|||||+++|++++......  +  ++
T Consensus       371 --~~P~~mE~lgq---~~GyvlY~t~i~~~~~~--------~~L~~~~~~Dra~Vfvdg~~~g~l~r~~~~~~--i--~~  433 (595)
T 4e8d_A          371 --LYPQKMEELGQ---SYGYLLYRTETNWDAEE--------ERLRIIDGRDRAQLYVDGQWVKTQYQTEIGED--I--FY  433 (595)
T ss_dssp             --SSCCBTGGGTC---CSSEEEEEEEEECSSSS--------EEEEEEEEESEEEEEETTEEEEEEEGGGTTSC--E--EE
T ss_pred             --CCCCCHHHcCC---CcCeEEEEeccCCCCCC--------ceeecCCCceEEEEEECCEEEEEEEcccCcce--E--Ee
Confidence              25677999999   99999999999754232        57999999999999999999999998653222  2  33


Q ss_pred             eccCCC-cEEEEEEEecCCccccCCC--CcccceeeccEEEccccCCcccCccCCcE-EEcCCCccccccccCCCCCCCc
Q 007110          309 NMRAGI-NKIALLSIAVGLPNVGPHF--ETWNAGVLGPVTLNGLNEGRRDLSWQKWT-YKIGLEGEKLNLHSLSGGSSVE  384 (618)
Q Consensus       309 ~l~~g~-n~L~ILven~Gr~NyG~~~--~~~~kGI~G~V~l~g~~~~~~~L~~~~W~-~~~~L~ge~~~~~~~~~~~~~~  384 (618)
                      .+..+. ++|+||||||||||||+.+  ++++|||+|+|+|++.     .|+  +|+ |.++|+.          ...+.
T Consensus       434 ~~~~~~~~~L~ILVEN~GRvNyG~~~~~~~~~KGi~g~V~l~~~-----~l~--~W~~~~L~l~~----------~~~~~  496 (595)
T 4e8d_A          434 QGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLH-----FLL--NWKHYPLPLDN----------PEKID  496 (595)
T ss_dssp             CCCSSSEEEEEEEEECCCCCCSGGGTTCGGGSCEEEEEEEETTE-----ECC--CEEEEEECCCC----------GGGCC
T ss_pred             ecCCCCCCEEEEEEEcCCCcccCcccCcCCCCCCCCCCeEECCE-----EcC--CcEEEeeccch----------hhhcc
Confidence            344455 7999999999999999987  5899999999999986     576  799 7888753          11223


Q ss_pred             cccCCcccCCCCceEEEEEEECCCCCCCeEEeeCCcceEEEEECCeeccccccccccCCCCCccccccccccccccCCCC
Q 007110          385 WAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCG  464 (618)
Q Consensus       385 W~~~~~~~~~~~~~wYr~~F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~cg  464 (618)
                      |...+   ...+|+|||++|++++..| |||||+||+||+|||||+||||||+             +|            
T Consensus       497 ~~~~~---~~~~P~fy~g~f~~~~~~D-TfLd~~gwgKG~v~VNG~nLGRYW~-------------~G------------  547 (595)
T 4e8d_A          497 FSKGW---TQGQPAFYAYDFTVEEPKD-TYLDLSEFGKGVAFVNGQNLGRFWN-------------VG------------  547 (595)
T ss_dssp             TTSCC---CTTSCEEEEEEEEESSCCB-EEEECTTCCEEEEEETTEEEEEEET-------------TC------------
T ss_pred             ccccc---CCCCCeEEEEEEEcCCCCC-EEEeCCCCceEEEEECCeeeecccC-------------CC------------
Confidence            33222   1246899999999987666 9999999999999999999999994             47            


Q ss_pred             CCceeEEecCCCcccCCCceEEEEEecCCCCCceEEEeec
Q 007110          465 EASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRRE  504 (618)
Q Consensus       465 ~PQqtlYhVP~~~Lk~g~N~ivifEe~g~~p~~i~~~~~~  504 (618)
                       |||||| ||++|||+|.|+|||||+++.....|+|++.+
T Consensus       548 -PQ~tLY-vP~~~Lk~G~NeIvvfEl~~~~~~~i~~~~~p  585 (595)
T 4e8d_A          548 -PTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRKP  585 (595)
T ss_dssp             -SBCEEE-ECGGGSCSEEEEEEEEESSSCCCSEEEEESSC
T ss_pred             -CeEEEE-ecHHHhCcCCceEEEEEecCCCCceEEeeccc
Confidence             999999 99999999999999999998777888888775
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A* Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1tg7a5354 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-ter 6e-35
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Length = 354 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

 Score =  133 bits (335), Expect = 6e-35
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 1   MFYIQQINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFI 60
                       ++           P    E   G +  +GG    +    L     +  
Sbjct: 229 NPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVF 288

Query: 61  QK-----GGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLH 115
            K     G +F+N YM  GGTN+G   G P   TSYDY + + E   + + K+  LK L 
Sbjct: 289 YKNDFSFGVAFLNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLG 347

Query: 116 RAIKL 120
              K+
Sbjct: 348 NFAKV 352

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1tg7a5354 Beta-galactosidase LacA, N-terminal domain {Penici 99.84
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.53
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.01
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 97.93
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 97.85
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 97.76
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 97.72
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 97.49
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 97.48
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 97.16
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 96.25
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 96.24
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 96.21
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 95.76
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 82.76
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=99.84  E-value=3.8e-22  Score=209.46  Aligned_cols=99  Identities=28%  Similarity=0.374  Sum_probs=83.3

Q ss_pred             CCCCCCeeeeEeccccccccCCCCCCCCHHHHHHHHHH-----HHHhCCceeeeeEeeccCCCCCCCCCCCccccccCCC
Q 007110           21 NKAYKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAK-----FIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDA   95 (618)
Q Consensus        21 ~~p~~P~~~~E~~~GWf~~WG~~~~~~~~~~~~~~~~~-----~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDY~A   95 (618)
                      .+|.+|+|++|||+||+++||++...+++++++..+.+     .++.|+..+||||||||||||+++ ++..+|||||+|
T Consensus       249 ~~p~~p~~~~E~~~g~~~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~YM~~GGTnfG~~~-~~~~~tsYdy~a  327 (354)
T d1tg7a5         249 QSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLG-HPGGYTSYDYGS  327 (354)
T ss_dssp             HCTTSCCEEEEEESSCCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEECSBCCBCCTTCB-CTTSCSBCCTTC
T ss_pred             cCCccceeeeccccccccccCCCccccCHHHHHHHHHHHHHhhhhhccccceEEeEEecccCCCCCC-CCCCCCCCCCCC
Confidence            46899999999999999999998877776666555544     456788889999999999999995 566899999999


Q ss_pred             CcccCCCCCChhHHHHHHHHHHHHh
Q 007110           96 PLDEYGLLRQPKWGHLKDLHRAIKL  120 (618)
Q Consensus        96 pl~E~G~~~~~Ky~~lr~~~~~i~~  120 (618)
                      ||+|+|+++.++|.++|.|+++|+.
T Consensus       328 pi~e~G~~~~~yy~~~k~l~~~~~~  352 (354)
T d1tg7a5         328 AISESRNITREKYSELKLLGNFAKV  352 (354)
T ss_dssp             SBCTTCCCCSHHHHHHHHHHHHHHT
T ss_pred             eECcCCCCCHHHHHHHHHHHHHhcc
Confidence            9999999953567789999888754
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure