Citrus Sinensis ID: 007128
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| Q940J9 | 623 | Probable methyltransferas | yes | no | 0.996 | 0.987 | 0.817 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.983 | 0.993 | 0.795 | 0.0 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.985 | 1.0 | 0.803 | 0.0 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.949 | 0.957 | 0.635 | 0.0 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.829 | 0.737 | 0.471 | 1e-141 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.813 | 0.736 | 0.472 | 1e-141 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.781 | 0.735 | 0.473 | 1e-138 | |
| Q84TJ0 | 591 | Probable methyltransferas | no | no | 0.841 | 0.878 | 0.451 | 1e-133 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.828 | 0.851 | 0.451 | 1e-131 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.802 | 0.597 | 0.464 | 1e-128 |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/624 (81%), Positives = 566/624 (90%), Gaps = 9/624 (1%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYL G+DD
Sbjct: 2 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 61
Query: 61 N-DGKQDEASKFGDVEDD-VVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
N D KQD++ + ED VV KSFPVCDDRHSE+IPCLDRN IYQMRLKLDLSLMEHYE
Sbjct: 62 NGDTKQDDS--VANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYE 119
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI
Sbjct: 120 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKI 179
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGTHFHYGADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD++
Sbjct: 180 SFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIM 239
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 298
TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+L
Sbjct: 240 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLL 299
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
LLELDR+LRPGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL
Sbjct: 300 LLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPL 359
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
+NDCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+
Sbjct: 360 SNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSS 419
Query: 419 SPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE 478
PRLADFGYS++MFEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+
Sbjct: 420 PPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKD 479
Query: 479 KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538
KDVWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++FSDI+ +GC
Sbjct: 480 KDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGC 539
Query: 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA-----TTADASSDSDK 593
S EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE VA T+++ DS+
Sbjct: 540 SAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSED 599
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
+ VVFIVQKK+WLTSESLRD+E
Sbjct: 600 GENNVVFIVQKKLWLTSESLRDSE 623
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/621 (79%), Positives = 554/621 (89%), Gaps = 14/621 (2%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR +GG+KK +I + V ++ + F+Y ++GSSN A+EYG RKLG LGG+DD
Sbjct: 1 MRGRSEGGKKKPVIVLLCVASVVLVFVYLFFGSSNH--KAIEYG---RKLG---LGGDDD 52
Query: 61 NDGKQDEASKFGDVEDDV----VPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH 116
+ K+D+ S VED V P+SFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH
Sbjct: 53 DSTKKDDTSSSFYVEDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH 112
Query: 117 YERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGE 176
YERHCPPPERRFNCLIPPP GYK+PIKWPKSRDEVWK NIPHTHLAHEKSDQNWMVVKGE
Sbjct: 113 YERHCPPPERRFNCLIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGE 172
Query: 177 KIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD 236
KI FPGGGTHFHYGADKYIAS+ANMLNF N+ +NN GRLRT LDVGCGVASFG YLL+S+
Sbjct: 173 KINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASE 232
Query: 237 VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 296
++TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG
Sbjct: 233 IMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 292
Query: 297 ILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQK 356
ILLLELDR+LRPGGYFAYSSPEAYAQDEEDLRIW+EMSALV RMCW IAAKRNQTV+WQK
Sbjct: 293 ILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQK 352
Query: 357 PLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLT 416
PL NDCY+ R PGT PPLC+SD DPDAVYGV MEACIT YSDHD K +GSGLAPWPARLT
Sbjct: 353 PLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLT 412
Query: 417 APSPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAAL 476
+P PRLADFGYS+++FEKDTE+WR RVD+YW+LLSPKIQS+++RN+MDMKA +GSFAAAL
Sbjct: 413 SPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAAL 472
Query: 477 KEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536
KEKDVWVM+VVPEDGPNTLKLIYDRGL+G++H+WCEA+STYPRTYDLLHAW + SDI+KR
Sbjct: 473 KEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKR 532
Query: 537 GCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGD 596
GCS EDLLLEMDRILRP+GF++IRDKQSVVD VKKYL+AL+WEAV T +S+SD+D D
Sbjct: 533 GCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETK--TASESDQDSD 590
Query: 597 EVVFIVQKKIWLTSESLRDTE 617
V+ IVQKK+WLTSESLRD E
Sbjct: 591 NVILIVQKKLWLTSESLRDLE 611
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/617 (80%), Positives = 554/617 (89%), Gaps = 9/617 (1%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
M+GR DGGQKKR+I V V A+ + F+Y +YGSS+ +SA+EYG RKLG LGG+DD
Sbjct: 1 MKGRSDGGQKKRVIALVCVAAVVLVFVYLFYGSSDHRASAIEYG---RKLG---LGGDDD 54
Query: 61 NDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH 120
+ + D +S FG V+D P+SFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH
Sbjct: 55 DTKQDDTSSSFG-VDDGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH 113
Query: 121 CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIF 180
CPPPERRFNCLIPPP+GYKVPIKWPKSRDEVWK NIPHTHLAHEKSDQNWMVVKG+KI F
Sbjct: 114 CPPPERRFNCLIPPPNGYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINF 173
Query: 181 PGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITM 240
PGGGTHFHYGADKYIAS+ANMLN+ N+ +NN GRLRTV DVGCGVASFG YLLSSD++TM
Sbjct: 174 PGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTM 233
Query: 241 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 300
SLAPNDVHQNQIQFALERGIPA LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGILLL
Sbjct: 234 SLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLL 293
Query: 301 ELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNN 360
ELDR+LRPGGYFAYSSPEAYAQDEEDLRIW+EMSALVERMCW+IAAKRNQTV+WQKPL N
Sbjct: 294 ELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTN 353
Query: 361 DCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSP 420
DCY+ R PGT PPLC SD+DPDAV+GV MEACIT YSDHD K +GSGLAPWPARLT+P P
Sbjct: 354 DCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPP 413
Query: 421 RLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKD 480
RLADFGYS+ MFEKDTE WR RVD+YW+LLSP+I+S+++RN+MDMKA +GSFAAALKEKD
Sbjct: 414 RLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKD 473
Query: 481 VWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540
VWVM+VVPEDGPNTLKLIYDRGL+G++H+WCEA+STYPRTYDLLHAW + SDI+K+GCS
Sbjct: 474 VWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSE 533
Query: 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVF 600
DLLLEMDRILRP+GF+IIRDKQ VVDFVKKYL+AL+WE V T D+ SD D D VVF
Sbjct: 534 VDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWEEVGTKTDSDSDQDS--DNVVF 591
Query: 601 IVQKKIWLTSESLRDTE 617
IVQKK+WLTSESLRD E
Sbjct: 592 IVQKKLWLTSESLRDME 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/601 (63%), Positives = 448/601 (74%), Gaps = 15/601 (2%)
Query: 12 RLITSVFVVAI-FIGFLYAYYGSS----NRGSSALEYGKSLRKLGSSYLGGEDDNDGKQD 66
+L T V V I +G YYGSS +R S + + + G L D
Sbjct: 14 KLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIGSLRNRD----IVL 69
Query: 67 EASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPER 126
S+F VPKS P+CD RHSELIPCLDRNL YQ++LKL+LSLMEHYE HCPP ER
Sbjct: 70 AVSRFE------VPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSER 123
Query: 127 RFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTH 186
RFNCL+PPP GYK+P++WP SRDEVWKANIPHTHLA EKSDQNWMVV G+KI FPGGGTH
Sbjct: 124 RFNCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTH 183
Query: 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPND 246
FH GADKYI S+A ML F D +NN G +R VLDVGCGVASFGAYLLS D+I MSLAPND
Sbjct: 184 FHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPND 243
Query: 247 VHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLL 306
VHQNQIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLL
Sbjct: 244 VHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLL 303
Query: 307 RPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMAR 366
RPGGYF YSSPEAYA D E+ +I M L +RMCW++ AKR+Q+V+W KP++N CY+ R
Sbjct: 304 RPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKR 363
Query: 367 APGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFG 426
PG LPPLC S DDPDA + V M+ACI+PYS K R SGL PWP RLTAP PRL + G
Sbjct: 364 DPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIG 423
Query: 427 YSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSV 486
+ E F +DTE+WR RV YW LL P +Q NS+RN+MDM ++LG FAAAL +KDVWVM+V
Sbjct: 424 VTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNV 483
Query: 487 VPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLE 546
+P +K+IYDRGLIG+ H+WCEA+ TYPRT+DL+HAW F++ + RGCS EDLL+E
Sbjct: 484 MPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIE 543
Query: 547 MDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKKI 606
MDRILRP GFVIIRD + ++KKYL L W+ +T D DE+V I +KK+
Sbjct: 544 MDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKL 603
Query: 607 W 607
W
Sbjct: 604 W 604
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/539 (47%), Positives = 337/539 (62%), Gaps = 27/539 (5%)
Query: 57 GEDDNDGKQD--------EASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLK 108
GE ++D +D EA GD + V K F +C + E IPCLD + + +LK
Sbjct: 143 GEVESDTVEDWGNQTEIVEAKSDGDSKARVRIKKFGMCPESMREYIPCLDNTDVIK-KLK 201
Query: 109 LDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQ 168
E +ERHCP + NCL+PPP GY+ PI WPKSRDEVW +N+PHT L +K Q
Sbjct: 202 -STERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQ 260
Query: 169 NWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASF 228
NW+ K FPGGGT F +GAD+Y+ ++ M++ +I +R +DVGCGVASF
Sbjct: 261 NWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVS----DITFGKHIRVAMDVGCGVASF 316
Query: 229 GAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288
GAYLLS DV+TMS+AP DVH+NQIQFALERG+PA T+RL YPS++F+L HCSRCR
Sbjct: 317 GAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCR 376
Query: 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348
I+W + DGILLLE++R+LR GGYFA+++ Y + W EM L +CW++ K
Sbjct: 377 INWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKE 436
Query: 349 NQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGL 408
+WQKP NNDCY++R GT PPLC DDPD V+ ++ CI S +K G +
Sbjct: 437 GYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCI---SRIPEKGYGGNV 493
Query: 409 APWPARLTAPSPRLADFGYSS-----EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLM 463
WPARL P RL + S E+F+ +++ W + Y L K + LRN++
Sbjct: 494 PLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRAL--KWKKMKLRNVL 551
Query: 464 DMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTY 521
DM+A G FAAAL + D WV+SVVP GPNTL +IYDRGL+G +H+WCE + TYPRTY
Sbjct: 552 DMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTY 611
Query: 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580
D LHA +FS IE++ C +LLEMDRILRP G IRD V+D +++ +A+ W
Sbjct: 612 DFLHASGLFS-IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHT 669
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/529 (47%), Positives = 340/529 (64%), Gaps = 27/529 (5%)
Query: 59 DDNDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
DD+D K A V + F +C + +E IPCLD N+ RL + E +E
Sbjct: 133 DDDDIKSTTAR--------VSVRKFEICSENMTEYIPCLD-NVEAIKRLN-STARGERFE 182
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
R+CP NC +P P GY+ PI WP+SRDEVW N+PHT L +K QNW+ + +K
Sbjct: 183 RNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKF 242
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGT F +GAD+Y+ I+ M+ +I+ R VLD+GCGVASFGAYL+S +V+
Sbjct: 243 KFPGGGTQFIHGADQYLDQISQMI----PDISFGNHTRVVLDIGCGVASFGAYLMSRNVL 298
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 298
TMS+AP DVH+NQIQFALERG+PA + T+RL YPS++F+L HCSRCRI+W + DGIL
Sbjct: 299 TMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGIL 358
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
LLE++R+LR GGYF +++ Y ++ W+EM L R+CW + K +WQKP+
Sbjct: 359 LLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPV 418
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
NN CY++R G PPLC+S+DDPD V+ V ++ACIT ++ G+ LAPWPARL P
Sbjct: 419 NNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRI---EENGYGANLAPWPARLLTP 475
Query: 419 SPRLADFGYSS-----EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFA 473
RL S E+F +++ W+ + +Y N L K LRN++DM+A G FA
Sbjct: 476 PDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWK--QIGLRNVLDMRAGFGGFA 533
Query: 474 AALKE--KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFS 531
AAL E D WV++V+P GPNTL +IYDRGL+G +H+WCE + TYPRTYDLLHA +FS
Sbjct: 534 AALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFS 593
Query: 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580
IE++ C+ ++LEMDRILRP G V IRD +V +++ A+ W
Sbjct: 594 -IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHT 641
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/503 (47%), Positives = 333/503 (66%), Gaps = 21/503 (4%)
Query: 85 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKW 144
+CD + IPCLD +++ + E+YERHCP ++ +CLIPPP GYK PI+W
Sbjct: 145 LCDKTKIDYIPCLDNE--EEIKRLNNTDRGENYERHCP--KQSLDCLIPPPDGYKKPIQW 200
Query: 145 PKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNF 204
P+SRD++W N+PHT L +K QNW+ + +K +FPGGGT F +GAD+Y+ I+ M+
Sbjct: 201 PQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI-- 258
Query: 205 SNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYL 264
+I R R LD+GCGVASFGA+L+ + T+S+AP DVH+NQIQFALERG+PA +
Sbjct: 259 --PDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMV 316
Query: 265 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE 324
V T+RL YPS+SFE+ HCSRCRI+W + DGILLLE++R+LR GGYF +++ Y ++
Sbjct: 317 AVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHED 376
Query: 325 EDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAV 384
WKEM L R+CW + K VW+KPLNN CY++R GT PPLC DDDPD V
Sbjct: 377 NLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDV 436
Query: 385 YGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSS-----EMFEKDTESW 439
+ V M+ CIT D+ G+ ++ WPARL P RL + E+ + ++ W
Sbjct: 437 WYVDMKPCITRLPDN---GYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFW 493
Query: 440 RNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDGPNTLKL 497
V+SY + + + LRN++DM+A G FAAAL + D WVM++VP G NTL +
Sbjct: 494 LEVVESYVRVF--RWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPV 551
Query: 498 IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFV 557
IYDRGL G++H+WCE + TYPRTYDL+HA +FS +EK+ C+ +++LEMDR+LRP G V
Sbjct: 552 IYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS-VEKKRCNITNIMLEMDRMLRPGGHV 610
Query: 558 IIRDKQSVVDFVKKYLRALNWEA 580
IRD S++D +++ +A+ W A
Sbjct: 611 YIRDSLSLMDQLQQVAKAIGWTA 633
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/534 (45%), Positives = 332/534 (62%), Gaps = 15/534 (2%)
Query: 78 VVPKS-FPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPS 136
V+P+S VC +E IPC + ++Q+ L+LS E ERHCPP E R CL+PPP+
Sbjct: 66 VIPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPN 125
Query: 137 GYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIA 196
YK+PI+WP SRD VW++N+ HTHLA K QNW+ +G+ FPGGGTHF +GA +YI
Sbjct: 126 DYKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQ 185
Query: 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFAL 256
+ NM+ ++ + G ++ VLDVGCGVASF AYLL + T+S AP D H+NQIQFAL
Sbjct: 186 RLGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFAL 244
Query: 257 ERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316
ERGI A + + TK+LPYP+ SFE+ HCSRCR+DW DGILL E+ RLLRP G+F YSS
Sbjct: 245 ERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSS 304
Query: 317 PEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCH 376
P AY +D+E IW ++ L MCW++ +++ QT +W K C +A L LC
Sbjct: 305 PPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCD 364
Query: 377 SDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSSEMFEKDT 436
+D + V ++ C+ ++ R S LA RL+A L G S + + DT
Sbjct: 365 VEDVLKPSWKVPLKDCVQISGQTEE--RPSSLA---ERLSAYPATLRKIGISEDEYTSDT 419
Query: 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLK 496
WR +V+ YW L++ + +RN+MDM A +G FAAA+ VWVM++VP +TL
Sbjct: 420 VFWREQVNHYWRLMN--VNETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLS 477
Query: 497 LIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR---GCSGEDLLLEMDRILRP 553
I++RGL G+ H+WCEA+STYPRTYDL+H+ VFS K GC ED++LEMDRI+RP
Sbjct: 478 GIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRP 537
Query: 554 TGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKKIW 607
GFVIIRD++ ++ ++ WE + + DK E V +K+ W
Sbjct: 538 QGFVIIRDEEYIISRIRGLAPKFLWEVETHELE---NKDKKITESVLFCRKRFW 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/525 (45%), Positives = 326/525 (62%), Gaps = 14/525 (2%)
Query: 85 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKW 144
VC + +E IPC + + Q+ L+LS E ERHCPP E+R CL+PPP YK+PI+W
Sbjct: 85 VCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPIRW 144
Query: 145 PKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNF 204
P SRD VW++N+ HTHLA K QNW+ +G+ FPGGGTHF +GA +YI + NM
Sbjct: 145 PTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQRLGNMTTN 204
Query: 205 SNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYL 264
++ + G + VLDVGCGVASF AYLL + TMS AP D H+NQIQFALERGI A +
Sbjct: 205 ETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALERGIRAMI 263
Query: 265 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE 324
+ TK++PYP+ SF++ HCSRCR+DW + DG+L+ E++RLLRP GYF YS+P AY +D+
Sbjct: 264 SAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAPPAYRKDK 323
Query: 325 EDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAV 384
+ IW ++ L MCW++ +++ QT +W K + C A L +C +D A
Sbjct: 324 DFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGVEDVSKAS 383
Query: 385 YGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSSEMFEKDTESWRNRVD 444
+ V + C+ + QK S L RL++ L + G S + F DT WR +V+
Sbjct: 384 WKVPLRDCVDISENRQQKP--SSLTD---RLSSYPTSLREKGISEDEFTLDTNFWREQVN 438
Query: 445 SYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLI 504
YW L++ + +RN+MD A +G FAAA+ +WVM+VVP +TL IY RGL
Sbjct: 439 QYWELMN--VNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSGIYQRGLT 496
Query: 505 GSIHNWCEAYSTYPRTYDLLHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562
G+ H+WCE +STYPRTYDLLHA +F+ I GC ED++LEMDRI+RP GF+IIRD+
Sbjct: 497 GAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRIIRPQGFIIIRDE 556
Query: 563 QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKKIW 607
+S+V V+ WE A D K + V+F +KK W
Sbjct: 557 ESIVSRVRDLAPKFLWE---VEAHELQDKYKKTETVLF-CRKKFW 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 248/534 (46%), Positives = 335/534 (62%), Gaps = 39/534 (7%)
Query: 94 IPCLDRNLIYQMRLKLDLSLMEHYERHCP--PPERRFNCLIPPPSGYKVPIKWPKSRDEV 151
IPCLD + +R EH ERHCP PP CL+P P GYK PI+WPKSR+++
Sbjct: 310 IPCLDN--VQAIRSLPSTKHYEHRERHCPDSPP----TCLVPLPDGYKRPIEWPKSREKI 363
Query: 152 WKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINN 211
W N+PHT LA K QNW+ V GE + FPGGGT F +GA YI + + S I
Sbjct: 364 WYTNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYI----DFIQESVPAIAW 419
Query: 212 EGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271
R R VLDVGCGVASFG +L DVITMSLAP D H+ Q+QFALERGIPA V+GT R
Sbjct: 420 GKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTR 479
Query: 272 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWK 331
LP+P R F++ HC+RCR+ W G LLLEL+R+LRPGG+F +S+ Y + ED+ IWK
Sbjct: 480 LPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWK 539
Query: 332 EMSALVERMCWRIAAKRNQTV------VWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVY 385
MS L+++MCW + + T+ ++KP +N+CY R+ +PP+C DDP+A +
Sbjct: 540 AMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSE-PVPPICADSDDPNASW 598
Query: 386 GVQMEACITPYSDHDQKARGSGL-APWPARL-TAP----SPRLADFGYSS-EMFEKDTES 438
V ++AC+ + D+ RGS WPARL AP S + +G ++ E F D E
Sbjct: 599 KVPLQACMH-TAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEH 657
Query: 439 WRNRV-DSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKL 497
W+ V SY N L I S+RN+MDM+A G FAAAL++ VWVM+VVP D P+TL +
Sbjct: 658 WKRVVTKSYLNGLG--INWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAI 715
Query: 498 IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFV 557
IY+RGL G H+WCE++STYPR+YDLLHA +FS +++R C+ ++ E+DR+LRP G +
Sbjct: 716 IYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQR-CNLTAVIAEVDRVLRPEGKL 774
Query: 558 IIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKKIWLTSE 611
I+RD + V+ ++A+ WE T + +K+G + VQK IW SE
Sbjct: 775 IVRDDAETIQQVEGMVKAMKWEVRMTYS-----KEKEG---LLSVQKSIWRPSE 820
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| 356501308 | 625 | PREDICTED: probable methyltransferase PM | 0.996 | 0.984 | 0.833 | 0.0 | |
| 21536697 | 622 | ankyrin-like protein [Arabidopsis thalia | 0.996 | 0.988 | 0.817 | 0.0 | |
| 18390392 | 623 | putative methyltransferase PMT8 [Arabido | 0.996 | 0.987 | 0.817 | 0.0 | |
| 297843246 | 622 | hypothetical protein ARALYDRAFT_470420 [ | 1.0 | 0.991 | 0.815 | 0.0 | |
| 14423548 | 623 | Unknown protein [Arabidopsis thaliana] g | 0.996 | 0.987 | 0.815 | 0.0 | |
| 255585558 | 951 | S-adenosylmethionine-dependent methyltra | 0.975 | 0.633 | 0.847 | 0.0 | |
| 449458828 | 614 | PREDICTED: probable methyltransferase PM | 0.988 | 0.993 | 0.830 | 0.0 | |
| 449498617 | 614 | PREDICTED: probable methyltransferase PM | 0.988 | 0.993 | 0.830 | 0.0 | |
| 356533682 | 625 | PREDICTED: probable methyltransferase PM | 0.996 | 0.984 | 0.828 | 0.0 | |
| 356576523 | 1032 | PREDICTED: probable methyltransferase PM | 0.977 | 0.584 | 0.830 | 0.0 |
| >gi|356501308|ref|XP_003519467.1| PREDICTED: probable methyltransferase PMT8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/624 (83%), Positives = 573/624 (91%), Gaps = 9/624 (1%)
Query: 2 RGRPDGGQKKRLITSVFVVAIFIGFLYAYYGS----SNRGSSALEYG-KSLRKLGSSYLG 56
RGR DG QKK L+ SV VAIF+GFLY Y+GS N GSSALEYG KSL++LG+SYLG
Sbjct: 3 RGRSDGLQKKHLVASVCGVAIFLGFLYVYHGSIIGSQNSGSSALEYGSKSLKRLGASYLG 62
Query: 57 GEDDNDGKQDEASKF---GDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSL 113
+DD D KQDE+S GD E D+VPKSFPVCDDRHSELIPCLDR+LIYQMRLKLDLSL
Sbjct: 63 ADDDADSKQDESSSSIMQGDGEADIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSL 122
Query: 114 MEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVV 173
MEHYERHCPP ERRFNCLIPPP+GYK+PIKWP+SRDEVWK NIPHTHLAHEKSDQNWM+V
Sbjct: 123 MEHYERHCPPSERRFNCLIPPPAGYKIPIKWPQSRDEVWKVNIPHTHLAHEKSDQNWMIV 182
Query: 174 KGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLL 233
KGEKI+FPGGGTHFHYGADKYIASIANMLNFS+ N+NNEGRLRTVLDVGCGVASFGAYLL
Sbjct: 183 KGEKIVFPGGGTHFHYGADKYIASIANMLNFSHHNLNNEGRLRTVLDVGCGVASFGAYLL 242
Query: 234 SSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293
SSD+I MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ
Sbjct: 243 SSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 302
Query: 294 RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVV 353
RDGILLLELDRLLRPGGYFAYSSPEAYAQDEED RIW+EMSALV RMCWRIAAK++QTV+
Sbjct: 303 RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWREMSALVGRMCWRIAAKKDQTVI 362
Query: 354 WQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPA 413
WQKPL N+CYM R PGT PPLC SDDDPDAV+GV MEACITPYSDHD +A+GSGLAPWPA
Sbjct: 363 WQKPLTNECYMEREPGTRPPLCQSDDDPDAVFGVNMEACITPYSDHDNRAKGSGLAPWPA 422
Query: 414 RLTAPSPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFA 473
RLT P PRLADFGYS+EMFEKDTE W+ RV++YWNLL PKI SN++RN+MDMKA++GSFA
Sbjct: 423 RLTTPPPRLADFGYSNEMFEKDTELWQGRVENYWNLLGPKISSNTVRNVMDMKANMGSFA 482
Query: 474 AALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533
AALK KDVWVM+VVP DGPNTLKL+YDRGLIGSIH+WCEAYSTYPRTYDLLHAWTVFSDI
Sbjct: 483 AALKGKDVWVMNVVPRDGPNTLKLVYDRGLIGSIHDWCEAYSTYPRTYDLLHAWTVFSDI 542
Query: 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDK 593
E RGCS EDLL+EMDR+LRPTGF+IIRDKQ V+DFVKKYL A++WEAVA TADAS+DSD+
Sbjct: 543 ETRGCSKEDLLIEMDRLLRPTGFIIIRDKQHVIDFVKKYLTAMHWEAVA-TADASADSDQ 601
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
DG+EV+F++QKK+WL +ESLR+TE
Sbjct: 602 DGNEVIFVIQKKLWLATESLRNTE 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21536697|gb|AAM61029.1| ankyrin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/624 (81%), Positives = 566/624 (90%), Gaps = 9/624 (1%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYL G+DD
Sbjct: 1 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 60
Query: 61 N-DGKQDEASKFGDVEDD-VVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
N D KQD++ + ED VV KSFPVCDDRHSE+IPCLDRN IYQMRLKLDLSLMEHYE
Sbjct: 61 NGDTKQDDS--VANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYE 118
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI
Sbjct: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKI 178
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGTHFHYGADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD++
Sbjct: 179 SFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIM 238
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 298
TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+L
Sbjct: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLL 298
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
LLELDR+LRPGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL
Sbjct: 299 LLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPL 358
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
+NDCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+
Sbjct: 359 SNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSS 418
Query: 419 SPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE 478
PRLADFGYS++MFEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+
Sbjct: 419 PPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKD 478
Query: 479 KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538
KDVWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++FSDI+ +GC
Sbjct: 479 KDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGC 538
Query: 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA-----TTADASSDSDK 593
S EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE VA T+++ DS+
Sbjct: 539 SAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSED 598
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
+ VVFIVQKK+WLTSESLRD+E
Sbjct: 599 GENNVVFIVQKKLWLTSESLRDSE 622
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18390392|ref|NP_563706.1| putative methyltransferase PMT8 [Arabidopsis thaliana] gi|186478123|ref|NP_001117225.1| putative methyltransferase PMT8 [Arabidopsis thaliana] gi|75249499|sp|Q940J9.1|PMT8_ARATH RecName: Full=Probable methyltransferase PMT8 gi|15450900|gb|AAK96721.1| Unknown protein [Arabidopsis thaliana] gi|17978687|gb|AAL47337.1| unknown protein [Arabidopsis thaliana] gi|332189575|gb|AEE27696.1| putative methyltransferase PMT8 [Arabidopsis thaliana] gi|332189576|gb|AEE27697.1| putative methyltransferase PMT8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/624 (81%), Positives = 566/624 (90%), Gaps = 9/624 (1%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYL G+DD
Sbjct: 2 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 61
Query: 61 N-DGKQDEASKFGDVEDD-VVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
N D KQD++ + ED VV KSFPVCDDRHSE+IPCLDRN IYQMRLKLDLSLMEHYE
Sbjct: 62 NGDTKQDDS--VANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYE 119
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI
Sbjct: 120 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKI 179
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGTHFHYGADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD++
Sbjct: 180 SFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIM 239
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 298
TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+L
Sbjct: 240 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLL 299
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
LLELDR+LRPGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL
Sbjct: 300 LLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPL 359
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
+NDCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+
Sbjct: 360 SNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSS 419
Query: 419 SPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE 478
PRLADFGYS++MFEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+
Sbjct: 420 PPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKD 479
Query: 479 KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538
KDVWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++FSDI+ +GC
Sbjct: 480 KDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGC 539
Query: 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA-----TTADASSDSDK 593
S EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE VA T+++ DS+
Sbjct: 540 SAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSED 599
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
+ VVFIVQKK+WLTSESLRD+E
Sbjct: 600 GENNVVFIVQKKLWLTSESLRDSE 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843246|ref|XP_002889504.1| hypothetical protein ARALYDRAFT_470420 [Arabidopsis lyrata subsp. lyrata] gi|297335346|gb|EFH65763.1| hypothetical protein ARALYDRAFT_470420 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/622 (81%), Positives = 562/622 (90%), Gaps = 5/622 (0%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYLGG+DD
Sbjct: 1 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLGGDDD 60
Query: 61 NDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH 120
N + E S + VV KSFPVCDDR+SE+IPCLDRN IYQMRLKLDLSLMEHYERH
Sbjct: 61 NGDTKQEDSVTNAEDSLVVAKSFPVCDDRYSEIIPCLDRNFIYQMRLKLDLSLMEHYERH 120
Query: 121 CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIF 180
CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI F
Sbjct: 121 CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISF 180
Query: 181 PGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITM 240
PGGGTHFHYGADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD+ITM
Sbjct: 181 PGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIITM 240
Query: 241 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 300
SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG+LLL
Sbjct: 241 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGLLLL 300
Query: 301 ELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNN 360
ELDR+LRPGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL+N
Sbjct: 301 ELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSN 360
Query: 361 DCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSP 420
DCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+ P
Sbjct: 361 DCYLEREPGTQPPLCRSDADPDAVAGVAMEACITPYSKHDHKTKGSGLAPWPARLTSSPP 420
Query: 421 RLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKD 480
RLADFGYS+++FEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+KD
Sbjct: 421 RLADFGYSTDIFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHIGSFAAALKDKD 480
Query: 481 VWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540
VWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++F+DI+ +GCS
Sbjct: 481 VWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFTDIKSKGCSA 540
Query: 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA-----TTADASSDSDKDG 595
EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE VA T ++ DS+
Sbjct: 541 EDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTGSELDQDSEDGE 600
Query: 596 DEVVFIVQKKIWLTSESLRDTE 617
+ VVFIVQKK+WLTSESLRDTE
Sbjct: 601 NNVVFIVQKKLWLTSESLRDTE 622
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14423548|gb|AAK62456.1|AF387011_1 Unknown protein [Arabidopsis thaliana] gi|20148263|gb|AAM10022.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/624 (81%), Positives = 565/624 (90%), Gaps = 9/624 (1%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYL G+DD
Sbjct: 2 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 61
Query: 61 N-DGKQDEASKFGDVEDD-VVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
N D KQD++ + ED VV KSFPVCDDRHSE+IPCLDRN IYQMRLKLDLSLMEHYE
Sbjct: 62 NGDTKQDDS--VANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYE 119
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI
Sbjct: 120 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKI 179
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGTHFH GADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD++
Sbjct: 180 SFPGGGTHFHCGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIM 239
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL 298
TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+L
Sbjct: 240 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLL 299
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
LLELDR+LRPGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL
Sbjct: 300 LLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPL 359
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
+NDCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+
Sbjct: 360 SNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSS 419
Query: 419 SPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE 478
PRLADFGYS++MFEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+
Sbjct: 420 PPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKD 479
Query: 479 KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538
KDVWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++FSDI+ +GC
Sbjct: 480 KDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGC 539
Query: 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA-----TTADASSDSDK 593
S EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE VA T+++ DS+
Sbjct: 540 SAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSED 599
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
+ VVFIVQKK+WLTSESLRD+E
Sbjct: 600 GENNVVFIVQKKLWLTSESLRDSE 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585558|ref|XP_002533469.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223526684|gb|EEF28921.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/608 (84%), Positives = 564/608 (92%), Gaps = 6/608 (0%)
Query: 12 RLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDDNDGKQDEASKF 71
R + +VAIF+GF+Y YYGS + EYG LRKLGS Y GG+DD+DGKQDE+ KF
Sbjct: 348 RAKMTRLLVAIFLGFIYFYYGSI---FGSQEYGSKLRKLGSPYWGGDDDSDGKQDESIKF 404
Query: 72 G--DVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFN 129
G D EDD +PKSFPVCDDRHSELIPCLDR+LIYQMR+KLDLSLMEHYERHCPPPERR+N
Sbjct: 405 GQEDGEDDSLPKSFPVCDDRHSELIPCLDRHLIYQMRMKLDLSLMEHYERHCPPPERRYN 464
Query: 130 CLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHY 189
CLIPPP+GYK+PIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI FPGGGTHFHY
Sbjct: 465 CLIPPPAGYKIPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKISFPGGGTHFHY 524
Query: 190 GADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQ 249
GADKYIASIANMLNFS +N+NNEGRLRTVLDVGCGVASFGAYLLSSD+I MSLAPNDVHQ
Sbjct: 525 GADKYIASIANMLNFSKNNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLAPNDVHQ 584
Query: 250 NQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPG 309
NQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPG
Sbjct: 585 NQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPG 644
Query: 310 GYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPG 369
GYFAYSSPEAYAQDEEDLRIW+EMSALVERMCWRIAAKRNQTV+WQKPL NDCYM R PG
Sbjct: 645 GYFAYSSPEAYAQDEEDLRIWREMSALVERMCWRIAAKRNQTVIWQKPLTNDCYMEREPG 704
Query: 370 TLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSS 429
TLPPLC SDDDPDAV+ V MEACITPYSDHD + +GSGLAPWPARLT+P PRLADFGYS+
Sbjct: 705 TLPPLCRSDDDPDAVWSVSMEACITPYSDHDHRVKGSGLAPWPARLTSPPPRLADFGYSN 764
Query: 430 EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPE 489
EMFEKDTE W++RV++YWNLLSPKIQSN+LRN+MDMKA+LGSF AAL+ KDVWVM+V+PE
Sbjct: 765 EMFEKDTELWKHRVENYWNLLSPKIQSNTLRNVMDMKANLGSFGAALRSKDVWVMNVIPE 824
Query: 490 DGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDR 549
DGP TLK+IYDRGLIG++HNWCEA+STYPRTYDLLHAWTVFS+IEK+GCS EDLL+EMDR
Sbjct: 825 DGPKTLKVIYDRGLIGTVHNWCEAFSTYPRTYDLLHAWTVFSEIEKKGCSPEDLLIEMDR 884
Query: 550 ILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKKIWLT 609
ILRP+GF+IIRDKQSVVDFVKKYL AL+WEAVAT+ +SSDSD+DG E+VFIVQKK+WLT
Sbjct: 885 ILRPSGFIIIRDKQSVVDFVKKYLVALHWEAVATSD-SSSDSDQDGGEIVFIVQKKLWLT 943
Query: 610 SESLRDTE 617
SESLRD E
Sbjct: 944 SESLRDEE 951
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458828|ref|XP_004147148.1| PREDICTED: probable methyltransferase PMT8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/618 (83%), Positives = 566/618 (91%), Gaps = 8/618 (1%)
Query: 2 RGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSS-NRGSSALEYG-KSLRKLGSSYLGGED 59
RGR DG QKKRLI ++ VVAIF+GFLYAYYGS SAL++G KSL S YL +
Sbjct: 3 RGRSDGSQKKRLIATICVVAIFLGFLYAYYGSIFGNQDSALQHGSKSL----SHYLMRNE 58
Query: 60 DNDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYER 119
D++ + ++ D +DDV+PKS+PVCDDRHSELIPCLDR+LIYQMRLKLDLSLMEHYER
Sbjct: 59 DSE-ESSTTTEQEDADDDVIPKSYPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYER 117
Query: 120 HCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKII 179
HCPPPERRFNCLIPPP+GYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI+
Sbjct: 118 HCPPPERRFNCLIPPPAGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIV 177
Query: 180 FPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVIT 239
FPGGGTHFHYGADKYIASIANMLNFSNDN+NNEGRLRTVLDVGCGVASFG YLLSS++I
Sbjct: 178 FPGGGTHFHYGADKYIASIANMLNFSNDNLNNEGRLRTVLDVGCGVASFGGYLLSSNIIA 237
Query: 240 MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 299
MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL
Sbjct: 238 MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 297
Query: 300 LELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLN 359
LELDRLLRPGGYFAYSSPEAYAQDEEDLRIW+EMS LV RMCWRIAAKRNQTV+WQKPL
Sbjct: 298 LELDRLLRPGGYFAYSSPEAYAQDEEDLRIWREMSDLVGRMCWRIAAKRNQTVIWQKPLT 357
Query: 360 NDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPS 419
NDCY+ R PGT PPLC SDDDPDAV+GVQMEACI+PYSD D KA+GSGLAPWPARLT+P
Sbjct: 358 NDCYLQREPGTRPPLCRSDDDPDAVWGVQMEACISPYSDRDHKAKGSGLAPWPARLTSPP 417
Query: 420 PRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK 479
PRL DFGYS+EMFEKDTE WR RV+SYWNLLSPKI+++++RN+MDMKA++GSF AALK+K
Sbjct: 418 PRLQDFGYSNEMFEKDTEMWRRRVESYWNLLSPKIETDTIRNVMDMKANMGSFGAALKDK 477
Query: 480 DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCS 539
DVWVM+VVPEDGPNTLKLIYDRGLIG+ +NWCEA+STYPRTYDLLHAWTVFSDIEK+ CS
Sbjct: 478 DVWVMNVVPEDGPNTLKLIYDRGLIGTTNNWCEAFSTYPRTYDLLHAWTVFSDIEKKECS 537
Query: 540 GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599
EDLLLEMDR+LRPTGF+IIRDKQSV+D +KKYL AL+WEAVA TADASSDS+ D DE +
Sbjct: 538 SEDLLLEMDRMLRPTGFIIIRDKQSVIDLIKKYLPALHWEAVA-TADASSDSELDSDEAI 596
Query: 600 FIVQKKIWLTSESLRDTE 617
FIVQKK+WLTSES+RD+E
Sbjct: 597 FIVQKKLWLTSESVRDSE 614
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449498617|ref|XP_004160585.1| PREDICTED: probable methyltransferase PMT8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/618 (83%), Positives = 566/618 (91%), Gaps = 8/618 (1%)
Query: 2 RGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSS-NRGSSALEYG-KSLRKLGSSYLGGED 59
RGR DG QKKRLI ++ VVAIF+GFLYAYYGS SAL++G KSL S YL +
Sbjct: 3 RGRSDGSQKKRLIATICVVAIFLGFLYAYYGSIFGNQDSALQHGSKSL----SHYLMRNE 58
Query: 60 DNDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYER 119
D++ + ++ D +DDV+PKS+PVCDDRHSELIPCLDR+LIYQMRLKLDLSLMEHYER
Sbjct: 59 DSE-ESSTTTEQEDADDDVIPKSYPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYER 117
Query: 120 HCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKII 179
HCPPPERRFNCLIPPP+GYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI+
Sbjct: 118 HCPPPERRFNCLIPPPAGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIV 177
Query: 180 FPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVIT 239
FPGGGTHFHYGADKYIASIANMLNFSNDN+NNEGRLRTVLDVGCGVASFG YLLSS++I
Sbjct: 178 FPGGGTHFHYGADKYIASIANMLNFSNDNLNNEGRLRTVLDVGCGVASFGGYLLSSNIIA 237
Query: 240 MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 299
MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL
Sbjct: 238 MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILL 297
Query: 300 LELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLN 359
LELDRLLRPGGYFAYSSPEAYAQDEEDLRIW+EMS LV RMCWRIAAKRNQTV+WQKPL
Sbjct: 298 LELDRLLRPGGYFAYSSPEAYAQDEEDLRIWREMSDLVGRMCWRIAAKRNQTVIWQKPLT 357
Query: 360 NDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPS 419
NDCY+ R PGT PPLC SDDDPDAV+GVQMEACI+PYSD D KA+GSGLAPWPARLT+P
Sbjct: 358 NDCYLQREPGTRPPLCRSDDDPDAVWGVQMEACISPYSDRDHKAKGSGLAPWPARLTSPP 417
Query: 420 PRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK 479
PRL DFGYS+EMFEKDTE WR RV+SYWNLLSPKI+++++RN+MDMKA++GSF AALK+K
Sbjct: 418 PRLQDFGYSNEMFEKDTEIWRRRVESYWNLLSPKIETDTIRNVMDMKANMGSFGAALKDK 477
Query: 480 DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCS 539
DVWVM+VVPEDGPNTLKLIYDRGLIG+ +NWCEA+STYPRTYDLLHAWTVFSDIEK+ CS
Sbjct: 478 DVWVMNVVPEDGPNTLKLIYDRGLIGTTNNWCEAFSTYPRTYDLLHAWTVFSDIEKKECS 537
Query: 540 GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599
EDLLLEMDR+LRPTGF+IIRDKQSV+D +KKYL AL+WEAVA TADASSDS+ D DE +
Sbjct: 538 SEDLLLEMDRMLRPTGFIIIRDKQSVIDLIKKYLPALHWEAVA-TADASSDSELDSDEAI 596
Query: 600 FIVQKKIWLTSESLRDTE 617
FIVQKK+WLTSES+RD+E
Sbjct: 597 FIVQKKLWLTSESVRDSE 614
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533682|ref|XP_003535389.1| PREDICTED: probable methyltransferase PMT8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/624 (82%), Positives = 572/624 (91%), Gaps = 9/624 (1%)
Query: 2 RGRPDGGQKKRLITSVFVVAIFIGFLYAY----YGSSNRGSSALEYG-KSLRKLGSSYLG 56
RGR DG KK L+ SV VA+F+G LY + +GS N GSSALEYG KSL++LG+SYLG
Sbjct: 3 RGRYDGSPKKHLVASVCGVAVFLGLLYVFQRSIFGSQNSGSSALEYGSKSLKRLGASYLG 62
Query: 57 GEDDNDGKQDEASKF---GDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSL 113
+DD D KQDE+S GD E D+VPKSFPVCDDRHSELIPCLDR+LIYQMRLKLDLSL
Sbjct: 63 SDDDADSKQDESSSSIAQGDGEADIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSL 122
Query: 114 MEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVV 173
MEHYERHCPP ERRFNCLIPPP+GYKVPIKWP+SRDEVWKANIPHTHLAHEKSDQNWM+V
Sbjct: 123 MEHYERHCPPAERRFNCLIPPPAGYKVPIKWPQSRDEVWKANIPHTHLAHEKSDQNWMIV 182
Query: 174 KGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLL 233
KGEKI+FPGGGTHFH GADKYIASIANMLNFSN+N+NNEGRLRTVLDVGCGVASFGAYLL
Sbjct: 183 KGEKIVFPGGGTHFHKGADKYIASIANMLNFSNNNLNNEGRLRTVLDVGCGVASFGAYLL 242
Query: 234 SSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293
SSD+I MSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ
Sbjct: 243 SSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 302
Query: 294 RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVV 353
RDGILLLELDRLLRPGGYFAYSSPEAYAQDEED RIW+EMSALV RMCWRIAAKRNQTV+
Sbjct: 303 RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDQRIWREMSALVGRMCWRIAAKRNQTVI 362
Query: 354 WQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPA 413
WQKPL N+CYM R PGT PPLC SDDDPDA++GV MEACITPYSDHD +A+GSGLAPWPA
Sbjct: 363 WQKPLTNECYMEREPGTRPPLCQSDDDPDAIWGVNMEACITPYSDHDNRAKGSGLAPWPA 422
Query: 414 RLTAPSPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFA 473
RLT P PRLADFGYS+EMFEKDTE W+ RV++YWNLL PKI SN++RN++DMKA++GSFA
Sbjct: 423 RLTTPPPRLADFGYSNEMFEKDTELWQGRVENYWNLLGPKISSNTVRNVLDMKANMGSFA 482
Query: 474 AALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533
AAL+ KDVWVM+VVP DGPNTLKLIYDRGLIGSIH+WCEAYSTYPRTYDLLHAWTVFSDI
Sbjct: 483 AALRGKDVWVMNVVPRDGPNTLKLIYDRGLIGSIHDWCEAYSTYPRTYDLLHAWTVFSDI 542
Query: 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDK 593
E RGCS EDLL+E+DR+LRPTGF+IIRDKQ V+DFVKKYL A++WEAVA TADAS+DSD+
Sbjct: 543 ETRGCSPEDLLIEIDRLLRPTGFIIIRDKQHVIDFVKKYLTAMHWEAVA-TADASADSDQ 601
Query: 594 DGDEVVFIVQKKIWLTSESLRDTE 617
DG+EV+ ++QKK+WLT+ESLR+TE
Sbjct: 602 DGNEVIIVIQKKLWLTTESLRNTE 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576523|ref|XP_003556380.1| PREDICTED: probable methyltransferase PMT8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/614 (83%), Positives = 566/614 (92%), Gaps = 11/614 (1%)
Query: 11 KRLITSVFVVAIFIGFLYAY----YGSSNRGSSALEYGKSLRKLGSSYLGGEDDNDGKQD 66
+RL+ ++ VVAIF+GFLY Y +GS N GSSALEYG+SL++LGSSYLG EDD DGKQD
Sbjct: 423 QRLVAAICVVAIFLGFLYVYGGSIFGSQNSGSSALEYGRSLKRLGSSYLGAEDDTDGKQD 482
Query: 67 EAS---KFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPP 123
E+S + GD ED++VPKSFPVCDDRHSELIPCLDR+LIYQMR+KLDLS+MEHYERHCPP
Sbjct: 483 ESSSSFRQGDGEDNIVPKSFPVCDDRHSELIPCLDRHLIYQMRMKLDLSVMEHYERHCPP 542
Query: 124 PERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGG 183
ERR+NCLIPPPSGYKVPIKWP+SRDEVWKANIPHTHLAHEKSDQNWM VK EKI+FPGG
Sbjct: 543 AERRYNCLIPPPSGYKVPIKWPQSRDEVWKANIPHTHLAHEKSDQNWMTVKAEKIVFPGG 602
Query: 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLA 243
GTHFHYGADKYIASIANMLNFSN+N+NNEGRLRTVLDVGCGVASFGAYLLSSD+I MSLA
Sbjct: 603 GTHFHYGADKYIASIANMLNFSNNNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLA 662
Query: 244 PNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELD 303
PNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELD
Sbjct: 663 PNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELD 722
Query: 304 RLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCY 363
RLLRPGGYFAYSSPEAYAQDEEDLRIWKEMS LV RMCW+IAAKRNQTVVWQKP NDCY
Sbjct: 723 RLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSDLVGRMCWKIAAKRNQTVVWQKPPTNDCY 782
Query: 364 MARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLA 423
M R PG+ PPLC SDDDPDA++GV MEACITPYSDHD +A+GSGLAPWPARLT+P PRLA
Sbjct: 783 MEREPGSRPPLCQSDDDPDAIWGVNMEACITPYSDHDNRAKGSGLAPWPARLTSPPPRLA 842
Query: 424 DFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWV 483
DFGYSS+MFEKD E W+ RV+ YW+LLS KI SN+LRN+MDMKA++GSFAAAL++KDVWV
Sbjct: 843 DFGYSSDMFEKDMELWQRRVEKYWDLLSSKITSNTLRNIMDMKANMGSFAAALRDKDVWV 902
Query: 484 MSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDL 543
M+VVP+DGPNTLKLIYDRGLIG+ H+WCEA+STYPRTYDLLHAWTV SDIE++GCS EDL
Sbjct: 903 MNVVPQDGPNTLKLIYDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVLSDIEQKGCSPEDL 962
Query: 544 LLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603
L+EMDR+LRPTGFVIIRDKQ V+DF+KKYL AL+WEA+ D+SSDS +DGDEVVFI+Q
Sbjct: 963 LIEMDRMLRPTGFVIIRDKQPVIDFIKKYLSALHWEAI----DSSSDSVQDGDEVVFIIQ 1018
Query: 604 KKIWLTSESLRDTE 617
KK+WLTSES RDTE
Sbjct: 1019 KKMWLTSESFRDTE 1032
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.996 | 0.987 | 0.799 | 2.7e-281 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.985 | 1.0 | 0.782 | 6.2e-275 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.983 | 0.993 | 0.774 | 2.2e-272 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.952 | 0.960 | 0.619 | 6e-206 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.810 | 0.720 | 0.468 | 4.2e-127 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.826 | 0.747 | 0.455 | 2.3e-126 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.829 | 0.781 | 0.451 | 1.1e-124 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.841 | 0.878 | 0.436 | 6e-119 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.837 | 0.861 | 0.434 | 2e-118 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.850 | 0.633 | 0.428 | 8.6e-117 |
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2703 (956.6 bits), Expect = 2.7e-281, P = 2.7e-281
Identities = 499/624 (79%), Positives = 551/624 (88%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR DGG KKRLI SV VVA+F+ FL+ YYGSS++G+SALEYG+SLRKLGSSYL G+DD
Sbjct: 2 MRGRSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDD 61
Query: 61 N-DGKQDEASKFGDVEDD-VVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYE 118
N D KQD++ + ED VV KSFPVCDDRHSE+IPCLDRN IYQMRLKLDLSLMEHYE
Sbjct: 62 NGDTKQDDS--VANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYE 119
Query: 119 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLA EKSDQNWMV KGEKI
Sbjct: 120 RHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKI 179
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGTHFHYGADKYIASIANMLNFSND +N+EGRLRTVLDVGCGVASFGAYLL+SD++
Sbjct: 180 SFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIM 239
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIX 298
TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+
Sbjct: 240 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLL 299
Query: 299 XXXXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
PGGYFAYSSPEAYAQDEE+L+IWKEMSALVERMCWRIA KRNQTVVWQKPL
Sbjct: 300 LLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPL 359
Query: 359 NNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAP 418
+NDCY+ R PGT PPLC SD DPDAV GV MEACITPYS HD K +GSGLAPWPARLT+
Sbjct: 360 SNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSS 419
Query: 419 SPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE 478
PRLADFGYS++MFEKDTE W+ +VDSYWNL+S K++SN++RN+MDMKAH+GSFAAALK+
Sbjct: 420 PPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKD 479
Query: 479 KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538
KDVWVM+VV DGPNTLKLIYDRGLIG+ HNWCEA+STYPRTYDLLHAW++FSDI+ +GC
Sbjct: 480 KDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGC 539
Query: 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXX----XKD 594
S EDLL+EMDRILRPTGFVIIRDKQSVV+ +KKYL+AL+WE V +D
Sbjct: 540 SAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSED 599
Query: 595 GDE-VVFIVQKKIWLTSESLRDTE 617
G+ VVFIVQKK+WLTSESLRD+E
Sbjct: 600 GENNVVFIVQKKLWLTSESLRDSE 623
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2643 (935.4 bits), Expect = 6.2e-275, P = 6.2e-275
Identities = 483/617 (78%), Positives = 540/617 (87%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
M+GR DGGQKKR+I V V A+ + F+Y +YGSS+ +SA+EYG RKLG LGG+DD
Sbjct: 1 MKGRSDGGQKKRVIALVCVAAVVLVFVYLFYGSSDHRASAIEYG---RKLG---LGGDDD 54
Query: 61 NDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH 120
+ + D +S FG V+D P+SFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH
Sbjct: 55 DTKQDDTSSSFG-VDDGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERH 113
Query: 121 CPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIF 180
CPPPERRFNCLIPPP+GYKVPIKWPKSRDEVWK NIPHTHLAHEKSDQNWMVVKG+KI F
Sbjct: 114 CPPPERRFNCLIPPPNGYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINF 173
Query: 181 PGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITM 240
PGGGTHFHYGADKYIAS+ANMLN+ N+ +NN GRLRTV DVGCGVASFG YLLSSD++TM
Sbjct: 174 PGGGTHFHYGADKYIASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTM 233
Query: 241 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXX 300
SLAPNDVHQNQIQFALERGIPA LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGI
Sbjct: 234 SLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLL 293
Query: 301 XXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNN 360
PGGYFAYSSPEAYAQDEEDLRIW+EMSALVERMCW+IAAKRNQTV+WQKPL N
Sbjct: 294 ELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTN 353
Query: 361 DCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSP 420
DCY+ R PGT PPLC SD+DPDAV+GV MEACIT YSDHD K +GSGLAPWPARLT+P P
Sbjct: 354 DCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPP 413
Query: 421 RLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKD 480
RLADFGYS+ MFEKDTE WR RVD+YW+LLSP+I+S+++RN+MDMKA +GSFAAALKEKD
Sbjct: 414 RLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKD 473
Query: 481 VWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540
VWVM+VVPEDGPNTLKLIYDRGL+G++H+WCEA+STYPRTYDLLHAW + SDI+K+GCS
Sbjct: 474 VWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSE 533
Query: 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXXXKDGDEVVF 600
DLLLEMDRILRP+GF+IIRDKQ VVDFVKKYL+AL+WE V +D D VVF
Sbjct: 534 VDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWEEVGTKTDSDSD--QDSDNVVF 591
Query: 601 IVQKKIWLTSESLRDTE 617
IVQKK+WLTSESLRD E
Sbjct: 592 IVQKKLWLTSESLRDME 608
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2619 (927.0 bits), Expect = 2.2e-272, P = 2.2e-272
Identities = 481/621 (77%), Positives = 538/621 (86%)
Query: 1 MRGRPDGGQKKRLITSVFVVAIFIGFLYAYYGSSNRGSSALEYGKSLRKLGSSYLGGEDD 60
MRGR +GG+KK +I + V ++ + F+Y ++GSSN A+EYG RKLG LGG+DD
Sbjct: 1 MRGRSEGGKKKPVIVLLCVASVVLVFVYLFFGSSNH--KAIEYG---RKLG---LGGDDD 52
Query: 61 NDGKQDEASKFGDVEDDV----VPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH 116
+ K+D+ S VED V P+SFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH
Sbjct: 53 DSTKKDDTSSSFYVEDVVGNGFTPRSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEH 112
Query: 117 YERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGE 176
YERHCPPPERRFNCLIPPP GYK+PIKWPKSRDEVWK NIPHTHLAHEKSDQNWMVVKGE
Sbjct: 113 YERHCPPPERRFNCLIPPPPGYKIPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGE 172
Query: 177 KIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD 236
KI FPGGGTHFHYGADKYIAS+ANMLNF N+ +NN GRLRT LDVGCGVASFG YLL+S+
Sbjct: 173 KINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASE 232
Query: 237 VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 296
++TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG
Sbjct: 233 IMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 292
Query: 297 IXXXXXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQK 356
I PGGYFAYSSPEAYAQDEEDLRIW+EMSALV RMCW IAAKRNQTV+WQK
Sbjct: 293 ILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQK 352
Query: 357 PLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLT 416
PL NDCY+ R PGT PPLC+SD DPDAVYGV MEACIT YSDHD K +GSGLAPWPARLT
Sbjct: 353 PLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLT 412
Query: 417 APSPRLADFGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAAL 476
+P PRLADFGYS+++FEKDTE+WR RVD+YW+LLSPKIQS+++RN+MDMKA +GSFAAAL
Sbjct: 413 SPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAAL 472
Query: 477 KEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536
KEKDVWVM+VVPEDGPNTLKLIYDRGL+G++H+WCEA+STYPRTYDLLHAW + SDI+KR
Sbjct: 473 KEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKR 532
Query: 537 GCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXXXKDGD 596
GCS EDLLLEMDRILRP+GF++IRDKQSVVD VKKYL+AL+WEAV +D D
Sbjct: 533 GCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETKTASESD--QDSD 590
Query: 597 EVVFIVQKKIWLTSESLRDTE 617
V+ IVQKK+WLTSESLRD E
Sbjct: 591 NVILIVQKKLWLTSESLRDLE 611
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1992 (706.3 bits), Expect = 6.0e-206, P = 6.0e-206
Identities = 371/599 (61%), Positives = 439/599 (73%)
Query: 12 RLITSVFVVAI-FIGFLYAYYGSSNR-GS-SALEYGKSLRKLGSSYLGGEDDNDGKQDEA 68
+L T V V I +G YYGSS GS + E+ S ++ + +G + D
Sbjct: 14 KLFTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTG-IGSLRNRDIVL-AV 71
Query: 69 SKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRF 128
S+F VPKS P+CD RHSELIPCLDRNL YQ++LKL+LSLMEHYE HCPP ERRF
Sbjct: 72 SRFE------VPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125
Query: 129 NCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFH 188
NCL+PPP GYK+P++WP SRDEVWKANIPHTHLA EKSDQNWMVV G+KI FPGGGTHFH
Sbjct: 126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFH 185
Query: 189 YGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVH 248
GADKYI S+A ML F D +NN G +R VLDVGCGVASFGAYLLS D+I MSLAPNDVH
Sbjct: 186 NGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH 245
Query: 249 QNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXP 308
QNQIQFALERGIP+ LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI P
Sbjct: 246 QNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP 305
Query: 309 GGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAP 368
GGYF YSSPEAYA D E+ +I M L +RMCW++ AKR+Q+V+W KP++N CY+ R P
Sbjct: 306 GGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDP 365
Query: 369 GTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYS 428
G LPPLC S DDPDA + V M+ACI+PYS K R SGL PWP RLTAP PRL + G +
Sbjct: 366 GVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVT 425
Query: 429 SEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVP 488
E F +DTE+WR RV YW LL P +Q NS+RN+MDM ++LG FAAAL +KDVWVM+V+P
Sbjct: 426 PEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMP 485
Query: 489 EDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMD 548
+K+IYDRGLIG+ H+WCEA+ TYPRT+DL+HAW F++ + RGCS EDLL+EMD
Sbjct: 486 VQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMD 545
Query: 549 RILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXXXKDGDEVVFIVQKKIW 607
RILRP GFVIIRD + ++KKYL L W+ DE+V I +KK+W
Sbjct: 546 RILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 604
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 243/519 (46%), Positives = 320/519 (61%)
Query: 67 EASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPER 126
EA GD + V K F +C + E IPCLD + + +LK E +ERHCP +
Sbjct: 161 EAKSDGDSKARVRIKKFGMCPESMREYIPCLDNTDVIK-KLK-STERGERFERHCPEKGK 218
Query: 127 RFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTH 186
NCL+PPP GY+ PI WPKSRDEVW +N+PHT L +K QNW+ K FPGGGT
Sbjct: 219 GLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQ 278
Query: 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPND 246
F +GAD+Y+ ++ M++ +I +R +DVGCGVASFGAYLLS DV+TMS+AP D
Sbjct: 279 FIHGADQYLDQMSKMVS----DITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKD 334
Query: 247 VHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXX 306
VH+NQIQFALERG+PA T+RL YPS++F+L HCSRCRI+W + DGI
Sbjct: 335 VHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRML 394
Query: 307 XPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMAR 366
GGYFA+++ Y + W EM L +CW++ K +WQKP NNDCY++R
Sbjct: 395 RAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSR 454
Query: 367 APGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFG 426
GT PPLC DDPD V+ ++ CI S +K G + WPARL P RL
Sbjct: 455 EAGTKPPLCDESDDPDNVWYTNLKPCI---SRIPEKGYGGNVPLWPARLHTPPDRLQTIK 511
Query: 427 YSS-----EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-- 479
+ S E+F+ +++ W + Y L K + LRN++DM+A G FAAAL +
Sbjct: 512 FDSYIARKELFKAESKYWNEIIGGYVRAL--KWKKMKLRNVLDMRAGFGGFAAALNDHKL 569
Query: 480 DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCS 539
D WV+SVVP GPNTL +IYDRGL+G +H+WCE + TYPRTYD LHA +FS IE++ C
Sbjct: 570 DCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLFS-IERKRCE 628
Query: 540 GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNW 578
+LLEMDRILRP G IRD V+D +++ +A+ W
Sbjct: 629 MSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGW 667
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 242/531 (45%), Positives = 332/531 (62%)
Query: 55 LGGEDDNDGKQDEASKFGDVEDDVVPKSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLM 114
LG + + + D+ K V + F +C + +E IPCLD N+ RL +
Sbjct: 123 LGNQTEFESSDDDDIKSTTARVSV--RKFEICSENMTEYIPCLD-NVEAIKRLN-STARG 178
Query: 115 EHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVK 174
E +ER+CP NC +P P GY+ PI WP+SRDEVW N+PHT L +K QNW+ +
Sbjct: 179 ERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKE 238
Query: 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS 234
+K FPGGGT F +GAD+Y+ I+ M+ +I+ R VLD+GCGVASFGAYL+S
Sbjct: 239 NDKFKFPGGGTQFIHGADQYLDQISQMI----PDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 235 SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294
+V+TMS+AP DVH+NQIQFALERG+PA + T+RL YPS++F+L HCSRCRI+W +
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 295 DGIXXXXXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVW 354
DGI GGYF +++ Y ++ W+EM L R+CW + K +W
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 355 QKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPAR 414
QKP+NN CY++R G PPLC+S+DDPD V+ V ++ACIT ++ G+ LAPWPAR
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRI---EENGYGANLAPWPAR 471
Query: 415 LTAPSPRLADFGYSS-----EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHL 469
L P RL S E+F +++ W+ + +Y N L K LRN++DM+A
Sbjct: 472 LLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWK--QIGLRNVLDMRAGF 529
Query: 470 GSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAW 527
G FAAAL E D WV++V+P GPNTL +IYDRGL+G +H+WCE + TYPRTYDLLHA
Sbjct: 530 GGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAA 589
Query: 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNW 578
+FS IE++ C+ ++LEMDRILRP G V IRD +V +++ A+ W
Sbjct: 590 GLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRW 639
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 244/540 (45%), Positives = 336/540 (62%)
Query: 55 LGGED-DNDGKQDEASKFGDVEDDVVPK-SFPV-----CDDRHSELIPCLDRNLIYQMRL 107
+GG D D+ + A+ VE+ P+ F + CD + IPCLD +
Sbjct: 108 IGGFDPDSIDELKSATGNSSVEEKESPEVGFQIEKLKLCDKTKIDYIPCLDNEEEIKRLN 167
Query: 108 KLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSD 167
D E+YERHCP ++ +CLIPPP GYK PI+WP+SRD++W N+PHT L +K
Sbjct: 168 NTDRG--ENYERHCP--KQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGG 223
Query: 168 QNWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVAS 227
QNW+ + +K +FPGGGT F +GAD+Y+ I+ M+ +I R R LD+GCGVAS
Sbjct: 224 QNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI----PDITFGSRTRVALDIGCGVAS 279
Query: 228 FGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRC 287
FGA+L+ + T+S+AP DVH+NQIQFALERG+PA + V T+RL YPS+SFE+ HCSRC
Sbjct: 280 FGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRC 339
Query: 288 RIDWLQRDGIXXXXXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347
RI+W + DGI GGYF +++ Y ++ WKEM L R+CW + K
Sbjct: 340 RINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKK 399
Query: 348 RNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSG 407
VW+KPLNN CY++R GT PPLC DDDPD V+ V M+ CIT D+ G+
Sbjct: 400 EGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY---GAN 456
Query: 408 LAPWPARLTAPSPRLADF---GYSS--EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNL 462
++ WPARL P RL Y S E+ + ++ W V+SY + K LRN+
Sbjct: 457 VSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWK--EFKLRNV 514
Query: 463 MDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRT 520
+DM+A G FAAAL + D WVM++VP G NTL +IYDRGL G++H+WCE + TYPRT
Sbjct: 515 LDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRT 574
Query: 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580
YDL+HA +FS +EK+ C+ +++LEMDR+LRP G V IRD S++D +++ +A+ W A
Sbjct: 575 YDLIHAAFLFS-VEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTA 633
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
Identities = 233/534 (43%), Positives = 321/534 (60%)
Query: 78 VVPKS-FPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPS 136
V+P+S VC +E IPC + ++Q+ L+LS E ERHCPP E R CL+PPP+
Sbjct: 66 VIPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPN 125
Query: 137 GYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIA 196
YK+PI+WP SRD VW++N+ HTHLA K QNW+ +G+ FPGGGTHF +GA +YI
Sbjct: 126 DYKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQ 185
Query: 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFAL 256
+ NM+ ++ + G ++ VLDVGCGVASF AYLL + T+S AP D H+NQIQFAL
Sbjct: 186 RLGNMMTNETGDLRSAGVVQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFAL 244
Query: 257 ERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFAYSS 316
ERGI A + + TK+LPYP+ SFE+ HCSRCR+DW DGI P G+F YSS
Sbjct: 245 ERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSS 304
Query: 317 PEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCH 376
P AY +D+E IW ++ L MCW++ +++ QT +W K C +A L LC
Sbjct: 305 PPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCD 364
Query: 377 SDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSSEMFEKDT 436
+D + V ++ C+ ++ R S LA RL+A L G S + + DT
Sbjct: 365 VEDVLKPSWKVPLKDCVQISGQTEE--RPSSLAE---RLSAYPATLRKIGISEDEYTSDT 419
Query: 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLK 496
WR +V+ YW L++ + +RN+MDM A +G FAAA+ VWVM++VP +TL
Sbjct: 420 VFWREQVNHYWRLMN--VNETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLS 477
Query: 497 LIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR---GCSGEDLLLEMDRILRP 553
I++RGL G+ H+WCEA+STYPRTYDL+H+ VFS K GC ED++LEMDRI+RP
Sbjct: 478 GIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRP 537
Query: 554 TGFVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXXXKDGDEVVFIVQKKIW 607
GFVIIRD++ ++ ++ WE K E V +K+ W
Sbjct: 538 QGFVIIRDEEYIISRIRGLAPKFLWEV---ETHELENKDKKITESVLFCRKRFW 588
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 231/532 (43%), Positives = 319/532 (59%)
Query: 79 VPKS-FPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSG 137
+P+S VC + +E IPC + + Q+ L+LS E ERHCPP E+R CL+PPP
Sbjct: 78 IPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKD 137
Query: 138 YKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIAS 197
YK+PI+WP SRD VW++N+ HTHLA K QNW+ +G+ FPGGGTHF +GA +YI
Sbjct: 138 YKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPEYIQR 197
Query: 198 IANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALE 257
+ NM ++ + G + VLDVGCGVASF AYLL + TMS AP D H+NQIQFALE
Sbjct: 198 LGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256
Query: 258 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFAYSSP 317
RGI A + + TK++PYP+ SF++ HCSRCR+DW + DG+ P GYF YS+P
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP 316
Query: 318 EAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHS 377
AY +D++ IW ++ L MCW++ +++ QT +W K + C A L +C
Sbjct: 317 PAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICGV 376
Query: 378 DDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGYSSEMFEKDTE 437
+D A + V + C+ + QK S L RL++ L + G S + F DT
Sbjct: 377 EDVSKASWKVPLRDCVDISENRQQKP--SSLTD---RLSSYPTSLREKGISEDEFTLDTN 431
Query: 438 SWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKL 497
WR +V+ YW L++ + +RN+MD A +G FAAA+ +WVM+VVP +TL
Sbjct: 432 FWREQVNQYWELMN--VNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMNDTLSG 489
Query: 498 IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSD--IEKRGCSGEDLLLEMDRILRPTG 555
IY RGL G+ H+WCE +STYPRTYDLLHA +F+ I GC ED++LEMDRI+RP G
Sbjct: 490 IYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRIIRPQG 549
Query: 556 FVIIRDKQSVVDFVKKYLRALNWEAVXXXXXXXXXXXKDGDEVVFIVQKKIW 607
F+IIRD++S+V V+ WE K + V+F +KK W
Sbjct: 550 FIIIRDEESIVSRVRDLAPKFLWEV---EAHELQDKYKKTETVLFC-RKKFW 597
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 243/567 (42%), Positives = 336/567 (59%)
Query: 62 DGKQDEASKFGDVEDDVVPKSFPVCDDRHS-ELIPCLDRNLIYQMRLKLDLSLMEHYERH 120
+ K ++ ++ G D + + +C+ + IPCLD + +R EH ERH
Sbjct: 279 ESKNEKEAQKGS--GDKLDYKWALCNTTAGPDYIPCLDN--VQAIRSLPSTKHYEHRERH 334
Query: 121 CP--PPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKI 178
CP PP CL+P P GYK PI+WPKSR+++W N+PHT LA K QNW+ V GE +
Sbjct: 335 CPDSPP----TCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYL 390
Query: 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVI 238
FPGGGT F +GA YI + + S I R R VLDVGCGVASFG +L DVI
Sbjct: 391 TFPGGGTQFKHGALHYI----DFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVI 446
Query: 239 TMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIX 298
TMSLAP D H+ Q+QFALERGIPA V+GT RLP+P R F++ HC+RCR+ W G
Sbjct: 447 TMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKL 506
Query: 299 XXXXXXXXXPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRNQTV------ 352
PGG+F +S+ Y + ED+ IWK MS L+++MCW + + T+
Sbjct: 507 LLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVA 566
Query: 353 VWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAP-W 411
++KP +N+CY R+ +PP+C DDP+A + V ++AC+ + D+ RGS W
Sbjct: 567 TYRKPTSNECYKNRSE-PVPPICADSDDPNASWKVPLQACMHT-APEDKTQRGSQWPEQW 624
Query: 412 PARLT-AP----SPRLADFGYSS-EMFEKDTESWRNRVD-SYWNLLSPKIQSNSLRNLMD 464
PARL AP S + +G ++ E F D E W+ V SY N L I S+RN+MD
Sbjct: 625 PARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLG--INWASVRNVMD 682
Query: 465 MKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLL 524
M+A G FAAAL++ VWVM+VVP D P+TL +IY+RGL G H+WCE++STYPR+YDLL
Sbjct: 683 MRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLL 742
Query: 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVXXX 584
HA +FS +++R C+ ++ E+DR+LRP G +I+RD + V+ ++A+ WE
Sbjct: 743 HADHLFSKLKQR-CNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEV---- 797
Query: 585 XXXXXXXXKDGDEVVFIVQKKIWLTSE 611
K+G + VQK IW SE
Sbjct: 798 -RMTYSKEKEG---LLSVQKSIWRPSE 820
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93YV7 | PMT3_ARATH | 2, ., 1, ., 1, ., - | 0.8038 | 0.9854 | 1.0 | no | no |
| Q940J9 | PMT8_ARATH | 2, ., 1, ., 1, ., - | 0.8173 | 0.9967 | 0.9871 | yes | no |
| Q8H118 | PMT1_ARATH | 2, ., 1, ., 1, ., - | 0.7954 | 0.9837 | 0.9934 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-08 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.001 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 0.002 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 858 bits (2218), Expect = 0.0
Identities = 298/517 (57%), Positives = 352/517 (68%), Gaps = 15/517 (2%)
Query: 92 ELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEV 151
+ IPCLD + + L MEH ERHCPP E + CL+PPP GYK PI WPKSRD+V
Sbjct: 1 DYIPCLDNDRAIKFLL--SRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKV 58
Query: 152 WKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINN 211
W AN+PHT LA EK QNW+ V+G+K FPGGGT F +GAD YI +A M+ I
Sbjct: 59 WYANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPD----IAW 114
Query: 212 EGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271
GR+RT LDVGCGVASFGAYLLS DV+TMS AP DVH+ Q+QFALERG+PA LGVLGT+R
Sbjct: 115 GGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRR 174
Query: 272 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDL-RIW 330
LPYPSRSF++AHCSRC I W DGILLLE+DR+LRPGGYF S P YA+DEEDL W
Sbjct: 175 LPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEW 234
Query: 331 KEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQME 390
K M AL + +CW++ AK+ +WQKP+NN CY R PG PPLC DDPDA + V ME
Sbjct: 235 KAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPME 294
Query: 391 ACITPYSDHDQKARGSGLAPWPARLTAPSPRLAD---FGYSSEMFEKDTESWRNRVDSYW 447
ACITP + + G L WP RLTA PRLA G S+E F+ DTE W+ RV Y
Sbjct: 295 ACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYK 354
Query: 448 NLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSI 507
LL I +RN+MDM A G FAAAL + VWVM+VVP D P+TL +IYDRGLIG
Sbjct: 355 RLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIY 414
Query: 508 HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVD 567
H+WCE +STYPRTYDLLHA +FS +KR C+ ED+LLEMDRILRP G VIIRD V+D
Sbjct: 415 HDWCEPFSTYPRTYDLLHADHLFSLYKKR-CNLEDILLEMDRILRPGGAVIIRDDVDVLD 473
Query: 568 FVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604
VKK +A+ WE T + E + I QK
Sbjct: 474 KVKKIAKAMRWEVRITDTEDGP----HDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 219 LDVGCGVASFGAYL---LSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRLPY 274
LDVGCG L + V + D+ + A +R + V+G + LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA 313
P SF++ S + L L E+ R+L+PGG
Sbjct: 54 PDESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 218 VLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLG-TKRLPYPS 276
VLD+GCG LL ND+ + A + + G ++LP
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96
Query: 277 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316
SF+L + + W L EL R+L+PGG A+S+
Sbjct: 97 SSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFST 135
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 219 LDVGCGVASFGAYLLSSDVITMSLAPN------DVHQNQIQFALERGIPAYLGVLGTKRL 272
LD+GCG + LL P D+ ++ A ER L RL
Sbjct: 1 LDIGCGTGTLLRALL-------EALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL 53
Query: 273 P------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 312
SF++ S + L +L L RLL+PGG
Sbjct: 54 DVLDAIDLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 214 RLRTVLDVGCGVASFGAYLLS--SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLG-TK 270
+ VLD GCG Y S V + L+P + Q + + A + YL G +
Sbjct: 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH----YL--AGDIE 95
Query: 271 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316
LP + +F+LA S + W L EL R++RPGG A+++
Sbjct: 96 SLPLATATFDLA-WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140
|
Length = 251 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.91 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.86 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.65 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.44 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.43 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.41 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.4 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.4 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.37 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.35 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.34 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.32 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.3 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.3 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.27 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.24 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.24 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.22 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.2 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.19 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.18 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.17 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.16 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.16 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.14 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.14 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.14 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.13 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.12 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.12 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.12 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.11 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.08 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.07 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.07 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.05 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.03 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.02 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.02 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.0 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.99 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.98 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.98 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.97 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.97 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.97 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.96 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.96 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.95 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.94 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.92 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.92 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.92 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.91 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.91 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.9 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.9 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.89 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.88 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.87 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.87 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.86 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.86 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.85 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.85 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.84 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.84 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.84 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.84 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.83 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.83 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.82 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.82 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.82 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.81 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.8 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.79 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.79 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.79 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.79 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.78 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.77 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.77 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.75 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.75 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.74 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.74 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.73 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.73 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.73 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.72 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.7 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.7 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.7 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.69 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.68 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.67 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.67 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.66 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.66 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.66 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.65 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.65 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.65 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.64 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.64 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.63 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.63 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.62 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.62 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.61 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.61 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.61 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.6 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.58 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.57 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.56 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.56 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.56 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.55 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.53 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.52 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.5 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.49 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.49 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.48 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.47 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.47 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.47 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.46 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.45 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.44 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.44 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.42 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.41 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.41 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.4 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.39 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.39 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.39 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.39 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.39 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.38 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.38 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.38 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.37 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.36 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.34 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.34 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.34 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.33 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.32 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.32 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.32 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.32 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.32 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.31 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.3 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.29 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.29 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.29 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.29 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.29 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.29 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.26 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.26 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.24 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.24 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.23 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.23 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.21 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.2 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.18 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.18 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.17 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.17 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.17 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.14 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.13 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.12 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.12 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.11 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.11 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.09 | |
| PLN02366 | 308 | spermidine synthase | 98.08 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.07 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.06 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.06 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.06 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.05 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.05 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.03 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.02 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.98 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.98 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.97 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.96 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.96 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.96 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.94 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.93 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.91 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.91 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.9 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.88 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.85 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.84 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.82 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.8 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.79 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.77 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.77 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.75 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.75 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.75 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.75 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.73 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.72 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.71 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.71 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.7 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.7 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.68 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.68 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.67 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.66 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.65 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.65 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.65 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.63 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.63 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.62 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.62 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.6 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.6 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.59 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.59 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.59 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.58 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.58 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.58 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.57 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.56 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.55 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.55 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.54 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.52 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.52 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.48 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.47 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.47 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.46 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.46 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.46 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.45 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.44 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.41 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.41 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.41 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.39 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.37 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.35 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.32 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.31 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.3 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.29 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.29 | |
| PLN02476 | 278 | O-methyltransferase | 97.28 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.26 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.26 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.25 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.24 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.23 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.22 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.19 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.18 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.16 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.1 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.08 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.08 | |
| PLN02366 | 308 | spermidine synthase | 97.06 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.02 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 96.99 | |
| PLN02823 | 336 | spermine synthase | 96.93 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 96.91 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 96.88 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 96.87 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 96.8 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 96.8 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 96.8 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.79 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.73 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.67 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.65 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.65 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.64 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.62 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.57 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.55 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 96.54 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.49 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.48 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 96.47 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.45 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.43 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.41 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.39 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.34 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.32 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.24 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 96.23 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 96.22 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.18 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.14 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.13 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.13 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.04 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 95.97 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 95.95 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.94 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.85 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 95.84 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 95.83 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.8 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 95.78 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.74 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.73 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.71 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.6 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 95.57 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.54 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.5 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.44 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.42 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 95.4 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 95.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.36 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 95.35 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 95.29 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 95.15 | |
| PLN02476 | 278 | O-methyltransferase | 95.15 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.14 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.14 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 95.13 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.12 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.08 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.01 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.0 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 94.98 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 94.93 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 94.88 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.68 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 94.63 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 94.62 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.6 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.43 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 94.39 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 94.38 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 94.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 94.37 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 94.28 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 94.28 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.25 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 94.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 94.12 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 94.12 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 94.03 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.95 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 93.86 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.5 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 93.5 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.42 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 93.41 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 93.39 | |
| PLN02823 | 336 | spermine synthase | 93.16 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.04 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 93.0 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 92.77 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 92.76 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.68 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 92.51 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.49 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 92.45 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 92.37 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 92.25 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 92.16 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 92.15 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 92.02 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 91.81 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 91.76 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 91.35 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 91.19 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 90.88 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 90.85 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 90.82 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 90.6 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 90.45 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 90.35 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 90.2 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 89.64 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 89.3 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 88.82 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 88.8 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 88.67 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 88.59 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 88.51 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 88.46 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 88.42 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 88.4 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 88.22 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 87.66 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 86.93 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 86.9 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 86.68 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 86.55 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 86.47 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 86.43 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 85.61 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 85.59 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 85.38 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 84.9 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 84.85 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 84.49 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 84.46 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 84.41 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 84.34 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 83.61 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 83.45 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 83.23 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 82.8 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 82.75 | |
| PRK13699 | 227 | putative methylase; Provisional | 82.34 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 82.31 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 81.79 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 81.35 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 80.42 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 80.3 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 80.09 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-136 Score=1091.12 Aligned_cols=500 Identities=57% Similarity=1.051 Sum_probs=478.0
Q ss_pred ccccccchhhHHHhhccc--ccchhhhhhhcCCCCCCccccccCCCCCCcccccCCCchhhhhhcCCCCcccccccCCCC
Q 007128 92 ELIPCLDRNLIYQMRLKL--DLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQN 169 (617)
Q Consensus 92 ~~~pc~d~~~~~~~~~~~--~~~~~~~~er~Cp~~~~~~~Clvp~P~~y~~P~~wP~s~d~~w~~n~~h~~L~~~~~~q~ 169 (617)
|||||+|+ ++++++ ++++|||||||||+.+++++||||+|++|+.||+||+|||++|++|+||++|+.+|..||
T Consensus 1 dy~PC~D~----~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qn 76 (506)
T PF03141_consen 1 DYIPCLDN----SRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQN 76 (506)
T ss_pred CCcCCCCH----HHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhccccc
Confidence 79999999 444444 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccchhhhhccCCCccch
Q 007128 170 WMVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQ 249 (617)
Q Consensus 170 w~~~~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~ 249 (617)
|++.+|+.+.||||+++|.+++..|++.|.++++. +..++..+++||||||+|+|+++|++++|+++.+++.+.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~----~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPL----IKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhc----cccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 99999999999999999999999999999999987 34678889999999999999999999999999999999999
Q ss_pred hhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhh-cCCHHHHH
Q 007128 250 NQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLR 328 (617)
Q Consensus 250 a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~ 328 (617)
+++|+|++||+++.+.+....+|||++++||+|||++|++.|..+.+.+|.|++|+|||||||+++.|+.+ ...++...
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~ 232 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEE 232 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHH
Confidence 99999999999999998888999999999999999999999999888899999999999999999999998 55566778
Q ss_pred HHHHHHHHHHHhhhhhhhccCceEEEeccCCccccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCC
Q 007128 329 IWKEMSALVERMCWRIAAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGL 408 (617)
Q Consensus 329 ~w~~l~~l~~~~gf~~v~~~~~~~iw~k~~~~~c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~ 408 (617)
.|+.++++++++||+++.++++++|||||.+++||..++....|++|..+++++++||++|++||+++|+..++.+++++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~ 312 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWL 312 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCC
Confidence 89999999999999999999999999999999999998877789999988999999999999999999999888999999
Q ss_pred CcCCCccCCCCCcccc---cCCChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEE
Q 007128 409 APWPARLTAPSPRLAD---FGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMS 485 (617)
Q Consensus 409 ~~wp~Rl~~~p~~~~~---~g~~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~ 485 (617)
++||+||+++|+|+.+ .|++.|.|.+|++.|+++|++|+++++..+++++||||||||||+|||||+|++++|||||
T Consensus 313 ~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMN 392 (506)
T PF03141_consen 313 PKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMN 392 (506)
T ss_pred CCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEE
Confidence 9999999999999987 6889999999999999999999999887799999999999999999999999999999999
Q ss_pred eecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 486 VVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 486 v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
|+|+.++|||++||+|||||+||||||+|+|||||||||||+++|+.. +++|+++++|+||||||||||++||||+.++
T Consensus 393 VVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 393 VVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred ecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 999999999999999999999999999999999999999999999955 5899999999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 566 VDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 566 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++|++|+++|+|++ +++| +|+++.++|+||+|||
T Consensus 472 l~~v~~i~~~lrW~~--~~~d--~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEV--RIHD--TEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceE--EEEe--cCCCCCCCceEEEEEC
Confidence 999999999999999 8999 5666689999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-25 Score=241.10 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=146.5
Q ss_pred ceeeccCCccccccCCCCCCcCCCccC------CCCCccccc-C----C----ChhhhhhhHHHHHHHHHHHHHhhcccc
Q 007128 390 EACITPYSDHDQKARGSGLAPWPARLT------APSPRLADF-G----Y----SSEMFEKDTESWRNRVDSYWNLLSPKI 454 (617)
Q Consensus 390 ~~ci~~~~~~~~~~~~~~~~~wp~Rl~------~~p~~~~~~-g----~----~~e~F~~D~~~Wk~~V~~y~~~l~~~i 454 (617)
..|+-|.|..+. .+-+||+.-. .+-..+.+. + + ..=.|......+.+.+.+|.+.|.+++
T Consensus 35 ~~CLVp~P~gYk-----~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 35 LRCLVPPPKGYK-----TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CccccCCCccCC-----CCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 458888887654 2467887652 222333221 1 1 122367777777888888887777655
Q ss_pred ----CccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhh-hhhcccCCcchhhhhhhh
Q 007128 455 ----QSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNW-CEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 455 ----~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~-~e~~~~~p~tfDlvh~~~ 528 (617)
..+.||.+||+|||+|+|||+|.+++|.+|++.|.|. ++++++|.|||+.+++... ...+|.+.++||+|||..
T Consensus 110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccc
Confidence 3489999999999999999999999999999999996 7999999999986555443 245663349999999988
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeE
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEV 598 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 598 (617)
.+..-.. +-...|.|+||||||||+||++.++. .+++|++++++|||+.+++.. .
T Consensus 190 c~i~W~~---~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~------------~ 254 (506)
T PF03141_consen 190 CLIPWHP---NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG------------D 254 (506)
T ss_pred ccccchh---cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC------------C
Confidence 7763221 22479999999999999999998863 677899999999999963222 2
Q ss_pred EEEEEecc
Q 007128 599 VFIVQKKI 606 (617)
Q Consensus 599 ~l~~~K~~ 606 (617)
+.|-||+.
T Consensus 255 ~aIwqKp~ 262 (506)
T PF03141_consen 255 TAIWQKPT 262 (506)
T ss_pred EEEEeccC
Confidence 88888854
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-24 Score=237.29 Aligned_cols=308 Identities=16% Similarity=0.195 Sum_probs=176.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc--ccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK--RLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~--~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..|++. .|+++|+++.++..+.. ......++.+.++|+. .+|+++++||+|+|..+++|+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 58999999999999999875 58999999988765432 1111234667777764 567888999999999886555
Q ss_pred ccc-cceEEEEecccccCCceeeecChhhhcC-------CHHHHHHHHHHHHHHHHhhhhhhhccCce--EEEeccCCcc
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSSPEAYAQ-------DEEDLRIWKEMSALVERMCWRIAAKRNQT--VVWQKPLNND 361 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~-------~~~~~~~w~~l~~l~~~~gf~~v~~~~~~--~iw~k~~~~~ 361 (617)
.++ ...+++++.|+|||||++++........ ++........+.+++.+.+|......... ..+.+..+
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-- 194 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIG-- 194 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechh--
Confidence 432 2569999999999999999964332211 11111112567778888888655433111 11111111
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCCCcCCCccCCCCCcccccCC-ChhhhhhhHHHHH
Q 007128 362 CYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLADFGY-SSEMFEKDTESWR 440 (617)
Q Consensus 362 c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~~~wp~Rl~~~p~~~~~~g~-~~e~F~~D~~~Wk 440 (617)
-|... ...|...+..= .++... ....+..+-+|+.-.+ .|+ ..+.|......+.
T Consensus 195 ~~~~~---------------~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~y~~-----~~i~~~~~f~g~~~~v~ 249 (475)
T PLN02336 195 AYVKN---------------KKNQNQICWLW-QKVSST----NDKGFQRFLDNVQYKS-----SGILRYERVFGEGFVST 249 (475)
T ss_pred hhhhc---------------cCCcceEEEEE-EeecCC----cchhHHHHhhhhcccc-----ccHHHHHHHhCCCCCCC
Confidence 11111 11111111000 000000 0001122222211011 122 1122222222222
Q ss_pred HHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec--cc---ccc-hhhhhh
Q 007128 441 NRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR--GL---IGS-IHNWCE 512 (617)
Q Consensus 441 ~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r--gl---~~~-~~~~~e 512 (617)
..+..-..++.. +....-.+|||+|||+|.++..|++. +. +|+.+|. +.++..|.++ ++ +.. ..++.
T Consensus 250 ~~v~~te~l~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~- 324 (475)
T PLN02336 250 GGLETTKEFVDK-LDLKPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCT- 324 (475)
T ss_pred chHHHHHHHHHh-cCCCCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-
Confidence 223222333332 22233457999999999999999875 44 4666663 5677666544 22 111 11222
Q ss_pred hcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 513 AYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 513 ~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. .+| ++||+|+|..++.|+. +.+.+|.|+.|+|||||.++|.+.
T Consensus 325 ~~-~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 325 KK-TYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cC-CCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 11 244 7899999999999887 788999999999999999999864
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-18 Score=170.45 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=76.5
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
++.+|||+|||||.++..++++ .|+++|+|+.|+..++.+.......++.+.++|++.+||++++||+|+|++++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4579999999999999888764 58999999999998886555444447899999999999999999999999985
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+ ..+...+|+|++|+|||||++++...
T Consensus 127 rn-~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 127 RN-FPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Hh-hCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 54 44557899999999999999998643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-18 Score=168.97 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=86.1
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
++.+|||||||||.++..+++. .|+++|+|+.|++.++.+.......++.|.++|++.|||+|++||+|++++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl- 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL- 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh-
Confidence 4589999999999999999875 59999999999988885444332233889999999999999999999999985
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+...+.+.+|+|++|||||||.+++..
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 555666899999999999999888853
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-14 Score=147.77 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHH--H-hCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFAL--E-RGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~--~-rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+|||||||+|.++..|++. .|+|+|+|+.|+..++.+... . ...++.+.++|+..+|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999988887653 589999999998877643221 1 12357788899999999999999999998
Q ss_pred cccccccccceEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++ +..++..+++|+.|+|||||++++.+.
T Consensus 154 ~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 GLR-NVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccc-cCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 854 445667899999999999999988643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-14 Score=142.70 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=98.2
Q ss_pred cccCchhhHHHHHHhHhcCCCCCCC--------CCCceeEEEeecccccccccccccc----------hhhhhccCCCcc
Q 007128 186 HFHYGADKYIASIANMLNFSNDNIN--------NEGRLRTVLDVGCGVASFGAYLLSS----------DVITMSLAPNDV 247 (617)
Q Consensus 186 ~F~~~a~~Y~~~l~~lL~~~~~~l~--------~~~~~~~VLDVGCG~G~~~~~L~~~----------~V~gvDis~~dl 247 (617)
.|.+.+..| +.+.+++.+..+++| .++.+.++|||+||||.++..+.+. +|+++|+++.|+
T Consensus 65 vF~~vA~~Y-D~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 65 VFESVAKKY-DIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHH-HHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 355555555 555566655554443 2345689999999999888777653 589999999999
Q ss_pred chhhhHHHHHhCCC----cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 248 HQNQIQFALERGIP----AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 248 ~~a~~~~a~~rg~~----~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..+. +.+.++++. +.+..+|+++|||++++||+.++++.+-.+.+ +++.|+|++|||||||+|.+-.+
T Consensus 144 ~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 144 AVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 9887 445445543 66888899999999999999999988665554 47899999999999999998543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-14 Score=146.39 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=86.7
Q ss_pred HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 195 IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 195 ~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
.+.+.+.+.+ .+ ..+|||||||+|..+..|+.. .|+++|+++.++..++.+... ..++.+..+|+..
T Consensus 41 ~~~~l~~l~l------~~--~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIEL------NE--NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCC------CC--CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc
Confidence 4455555554 33 368999999999988888653 589999988777666533221 2356777888888
Q ss_pred cCCCCCcccccccccccccccc-ccceEEEEecccccCCceeeecChh
Q 007128 272 LPYPSRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 272 lpf~~~sFDlV~~s~~l~h~~~-~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.|+++++||+|++..+++|+.. +...+++++.++|||||+|+++++.
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8999999999999887777642 5567999999999999999998653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-14 Score=150.47 Aligned_cols=102 Identities=23% Similarity=0.417 Sum_probs=84.1
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
++.+|||||||+|.++..|++. .|+|+|+++.++..++. .+.+.++ ++.+.++|+..+|+++++||+|++..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3468999999999999988864 68999999988877763 4444444 4788889999999999999999998886
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+|+. +...+++++.|+|||||++++++.
T Consensus 197 ~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 6654 446799999999999999999753
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-15 Score=125.84 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=69.3
Q ss_pred Eeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 295 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~ 295 (617)
||+|||+|.++..|+++ .|+++|+++.++..++.. ... ..+.+..+|...+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~-~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKR-LKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHH-TTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhc-ccc--cCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999876 488888877655544421 111 12337888999999999999999999885554 666
Q ss_pred ceEEEEecccccCCceeee
Q 007128 296 GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 296 ~~~L~el~RvLrPGG~lvi 314 (617)
..+++|+.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 7899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-14 Score=141.43 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=92.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
+.+|||||||.|.++..|++. .|+|+|+++..++.|+ ..|.+.++.+.+....++++-...++||+|+|..+++|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 368999999999999999986 5999999999999998 6788889998898888888887778999999999976655
Q ss_pred cccceEEEEecccccCCceeeecChhhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
++..+++.+.+.+||||.+++++.+..
T Consensus 139 -dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 139 -DPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 447899999999999999999987754
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-14 Score=133.74 Aligned_cols=137 Identities=27% Similarity=0.499 Sum_probs=93.9
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT 269 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~ 269 (617)
..+.+.+.++++. ..+..+|||||||+|.++..|++. .++++|+++.++.. ........+.
T Consensus 7 ~~~~~~~~~~~~~-------~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~ 69 (161)
T PF13489_consen 7 RAYADLLERLLPR-------LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDA 69 (161)
T ss_dssp HCHHHHHHHHHTC-------TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEEC
T ss_pred HHHHHHHHHHhcc-------cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhh
Confidence 3455556666642 122368999999999999999776 58888888765543 2222233333
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHH---------------HHHH
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIW---------------KEMS 334 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w---------------~~l~ 334 (617)
...++++++||+|+|+.++. +..++..+|+++.++|||||+++++++............| +++.
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~-~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLE-HLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGG-GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred hhhhccccchhhHhhHHHHh-hcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence 45556788999999998854 5556688999999999999999998776421000000000 7888
Q ss_pred HHHHHhhhhhhh
Q 007128 335 ALVERMCWRIAA 346 (617)
Q Consensus 335 ~l~~~~gf~~v~ 346 (617)
.+++++||++++
T Consensus 149 ~ll~~~G~~iv~ 160 (161)
T PF13489_consen 149 QLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCEEEE
Confidence 999999987754
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-13 Score=146.45 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=99.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC--CCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG--IPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+.+|||||||+|.++..|+.. .|+|+|+++.++..++.. +...+ .++.+.+++++.+++++++||+|+|..+++|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 468999999999999988765 599999999888777643 32222 2567788888899988889999999998655
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcC-------CHHHH--------HHH------HHHHHHHHHhhhhhhhccC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ-------DEEDL--------RIW------KEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~-------~~~~~--------~~w------~~l~~l~~~~gf~~v~~~~ 349 (617)
+ .++..+++++.++|||||.+++++++.... ..+.. ..| +++.+++++.||+++...+
T Consensus 211 v-~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 211 V-ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 5 455789999999999999999986443210 00000 012 7788999999998776543
Q ss_pred c
Q 007128 350 Q 350 (617)
Q Consensus 350 ~ 350 (617)
.
T Consensus 290 ~ 290 (322)
T PLN02396 290 F 290 (322)
T ss_pred e
Confidence 3
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-13 Score=134.92 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=79.9
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++...+.....++.+..+|...+++++++||+|++..++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l- 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL- 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc-
Confidence 368999999999998888753 58999999988877764433222224677788888889888999999988774
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.++...+++++.++|+|||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 555565779999999999999999864
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-13 Score=140.65 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=80.2
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC-CCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP-YPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..|++. .|+++|+++.++..++. .+.+.++ ++.+.++|+..++ +++++||+|+|..++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl- 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL- 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH-
Confidence 468999999999999999876 58999999998888773 4444443 4567777877764 667899999999874
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++..++..++.++.++|||||++++..
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 555566789999999999999998763
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-13 Score=136.44 Aligned_cols=152 Identities=20% Similarity=0.356 Sum_probs=99.1
Q ss_pred hhhcCCCCcccccccCCCCeEEEeCceeecCCCCccccCchhh------H---HHHHHhHhcCCCCCCCCCCceeEEEee
Q 007128 151 VWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADK------Y---IASIANMLNFSNDNINNEGRLRTVLDV 221 (617)
Q Consensus 151 ~w~~n~~h~~L~~~~~~q~w~~~~~~~~~Fpgg~~~F~~~a~~------Y---~~~l~~lL~~~~~~l~~~~~~~~VLDV 221 (617)
.|.+...|+.-.+++++-|.+....+...-||....+...+.. | .+.+.+.+... + .....+|||+
T Consensus 18 ~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~---l--~~~~~~vLDi 92 (272)
T PRK11088 18 SWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAER---L--DEKATALLDI 92 (272)
T ss_pred EEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHh---c--CCCCCeEEEE
Confidence 4777777887666666666555433443444444333332221 1 22233333221 1 1223579999
Q ss_pred cccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 222 GCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 222 GCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
|||+|.++..|++. .++|+|+|+.++. .|.++..++.+.++|...+|+++++||+|++..+
T Consensus 93 GcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~-----~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------- 160 (272)
T PRK11088 93 GCGEGYYTHALADALPEITTMQLFGLDISKVAIK-----YAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA------- 160 (272)
T ss_pred CCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH-----HHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-------
Confidence 99999998887653 3678888776554 4445555677888999999999999999986542
Q ss_pred cceEEEEecccccCCceeeecChhhh
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
...+.|+.|+|||||+|++..+...
T Consensus 161 -~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 161 -PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred -CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 2356899999999999999876543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-13 Score=137.28 Aligned_cols=95 Identities=23% Similarity=0.429 Sum_probs=75.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..|++. .|+|+|+++.++..+ ++++ +.+..+|+..++ ++++||+|+|+.+ +|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a-----~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 100 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAA-----RERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQ 100 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HhcC--CcEEEcChhhCC-CCCCceEEEEehh-hh
Confidence 368999999999999888764 589999988766544 3333 556778887775 5679999999887 55
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|..+...+++++.++|||||++++..+.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 6666678999999999999999997543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-12 Score=146.43 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=153.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ .+.+..+|... ++++++||+|+|+--.+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 58999999999998877643 69999999988887774 3444444 35566666432 23456899999853211
Q ss_pred cccc-------------------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DWLQ-------------------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~~~-------------------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.... ....++.++.++|+|||.+++..- ... -+.+.+++...||..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----~~q-----~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----FKQ-----EEAVTQIFLDHGYNI 288 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----Cch-----HHHHHHHHHhcCCCc
Confidence 1000 001245677889999999998521 111 145677777778743
Q ss_pred hhccCceEEEeccCCccccccCCCCCCCCCCCCCCCCCcccccccceeeccCCccccccCCCCCCcCCCccCCCCCcccc
Q 007128 345 AAKRNQTVVWQKPLNNDCYMARAPGTLPPLCHSDDDPDAVYGVQMEACITPYSDHDQKARGSGLAPWPARLTAPSPRLAD 424 (617)
Q Consensus 345 v~~~~~~~iw~k~~~~~c~~~~~~~~~~~~c~~~~~~~~~Wy~~l~~ci~~~~~~~~~~~~~~~~~wp~Rl~~~p~~~~~ 424 (617)
+. +++.-.+........ +.+ -..+.. .. +| .|
T Consensus 289 ~~------~~~D~~g~~R~v~~~-----~~~-----~~rs~~-rr--------------~g-------~~---------- 320 (506)
T PRK01544 289 ES------VYKDLQGHSRVILIS-----PIN-----LNRSYA-RR--------------IG-------KS---------- 320 (506)
T ss_pred eE------EEecCCCCceEEEec-----ccc-----CCccee-cc--------------CC-------CC----------
Confidence 32 233333333111110 000 000111 00 00 00
Q ss_pred cCCChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-----CCceEEEe
Q 007128 425 FGYSSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-----PNTLKLIY 499 (617)
Q Consensus 425 ~g~~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-----~~~l~~~~ 499 (617)
++...-.--...|....-...++++ ..-..+||+|||.|.|...+|...=. .|++.++. ...+..+.
T Consensus 321 --~~~~q~~~~e~~~p~~~i~~eklf~-----~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~ 392 (506)
T PRK01544 321 --LSGVQQNLLDNELPKYLFSKEKLVN-----EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAG 392 (506)
T ss_pred --CCHHHHHHHHhhhhhhCCCHHHhCC-----CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHH
Confidence 0100000000111110001011111 12356999999999999999976211 14444442 13333344
Q ss_pred ecccccchhhhhhh----cccCC-cchhhhhhhhhhhhhh------hcCCCcccchhhccccccCcceEEEecC-hhHHH
Q 007128 500 DRGLIGSIHNWCEA----YSTYP-RTYDLLHAWTVFSDIE------KRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVD 567 (617)
Q Consensus 500 ~rgl~~~~~~~~e~----~~~~p-~tfDlvh~~~~~~~~~------~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~ 567 (617)
++|+ .++.-.+.+ ...+| +++|-||.+ |++=+ +.|=--...|.++.|+|||||.+.++.. .+..+
T Consensus 393 ~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 393 EQNI-TNFLLFPNNLDLILNDLPNNSLDGIYIL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred HcCC-CeEEEEcCCHHHHHHhcCcccccEEEEE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 4454 111111111 12344 889988752 33111 2232334889999999999998866544 55555
Q ss_pred HHHHhhhhc-cccc
Q 007128 568 FVKKYLRAL-NWEA 580 (617)
Q Consensus 568 ~~~~~~~~~-~w~~ 580 (617)
.+...+... +|+.
T Consensus 470 ~~~~~~~~~~~f~~ 483 (506)
T PRK01544 470 EAIELIQQNGNFEI 483 (506)
T ss_pred HHHHHHHhCCCeEe
Confidence 555555443 3554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-12 Score=144.81 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=81.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..|++. .|+|+|+|+.++..++. .+......+.+..+|...+++++++||+|+|..+++|+
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE-RAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence 468999999999988877764 58999999887776653 22223345778888988889988899999998886655
Q ss_pred ccccceEEEEecccccCCceeeecChh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.++..++++++|+|||||.++++++.
T Consensus 346 -~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 346 -QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred -CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 45578999999999999999997543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-12 Score=136.95 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=94.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..+++. .++++|+++.++..++.+.. ..++.+..+|...+++++++||+|+++.++.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 368999999999988777553 58899999887776653322 12456778899999999999999999887655
Q ss_pred cccccceEEEEecccccCCceeeecChhh--hcCCHHHHHHH------HHHHHHHHHhhhhhhhccC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA--YAQDEEDLRIW------KEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~~~~~~~~~w------~~l~~l~~~~gf~~v~~~~ 349 (617)
+. +...+|+++.|+|+|||.+++..+.. .+........| +++.++++++||+.+....
T Consensus 191 ~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 191 WP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 44 44679999999999999998864321 11111111112 7788999999998766443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-12 Score=131.74 Aligned_cols=99 Identities=26% Similarity=0.459 Sum_probs=80.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||+|||+|.++..|++. .++++|+++.++..+ +++.....+.++|++.+|+++++||+|+++.+ +||.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a-----~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQA-----RQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHH-----HhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhc
Confidence 468999999999998888764 588898888665544 33333345678899999999999999998876 6788
Q ss_pred cccceEEEEecccccCCceeeecChhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.++..+|.++.|+|+|||+++++.+..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 777889999999999999999987654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-12 Score=135.63 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=91.3
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHH-HhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++|||||||+|.++..+++. .|+|+|+++.++..+...... ....++.+..++++.+|+ +++||+|+|..+++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H- 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH- 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc-
Confidence 68999999999999888765 399999998776543321111 112357788888999998 789999999887655
Q ss_pred ccccceEEEEecccccCCceeeecChhhhc-----CCHHHH-----HHH-----HHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEEDL-----RIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~~~-----~~w-----~~l~~l~~~~gf~~v~ 346 (617)
..++..+|++++++|+|||.+++.+..... ..+... ..| .++..+++++||+.+.
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEE
Confidence 455578999999999999999986322110 000000 011 5788889999997654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-13 Score=115.66 Aligned_cols=90 Identities=27% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccccc---chhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 463 MDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIG---SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~---~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
||+|||+|.++..|+++ +. +|+.+|. +++++.+.++.... ..+.-.+.++.-+++||+|++..+|+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---
Confidence 79999999999999998 66 5666663 56777666664321 22222234432239999999999999884
Q ss_pred CCcccchhhccccccCcceEEE
Q 007128 538 CSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii 559 (617)
+...++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 789999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-12 Score=113.01 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=57.6
Q ss_pred Eeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-C-CCCccccccccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-f-~~~sFDlV~~s~~l~h~~ 292 (617)
||||||+|.++..+++. .++++|+|+.++..++.+..............+..... . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999875 58999999999987776665544333222222222221 1 22699999999886554
Q ss_pred cccceEEEEecccccCCcee
Q 007128 293 QRDGILLLELDRLLRPGGYF 312 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~l 312 (617)
++...+++.+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66678999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-12 Score=129.84 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=71.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..|++. .|+|+|+|+.|++.++. +. .+.++|++.+|+++++||+|+|+.++ |+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-----~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-----AD---DKVVGSFEALPFRDKSFDVVMSSFAL-HA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-----cc---ceEEechhhCCCCCCCEEEEEecChh-hc
Confidence 368999999999999888775 58999999988776542 21 24567889999999999999999985 55
Q ss_pred ccccceEEEEecccccCCc
Q 007128 292 LQRDGILLLELDRLLRPGG 310 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG 310 (617)
..++..+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 5666889999999999953
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-12 Score=127.75 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred eeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++.+..... ..++.+..+|+..++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 358999999999988777652 59999999988888774433221 23567888898888876 4899998887
Q ss_pred cccccc-ccceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQ-RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~-~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
++++.. +...+++++.|+|+|||.++++.+.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 544432 2356999999999999999998643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-12 Score=130.42 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=91.5
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|..+..++.. .|+++|+++.++..++.. ....++ ++.+..+|++.+|+++++||+|++..+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 469999999999866554432 489999999888877643 333343 566777889999998899999997765
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhcCCHH----HHHH----------HHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE----DLRI----------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~----~~~~----------w~~l~~l~~~~gf~~v~ 346 (617)
+|+..+...+++++.|+|||||+|++++......... .... ..++.++++..||..+.
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 4555555679999999999999999964322111110 0011 25677778888886553
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-12 Score=127.72 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=77.1
Q ss_pred eeEEEeeccccccccccccc------chhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS------SDVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~------~~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
..+|||||||+|..+..+++ ..++++|+++.|+..++.+..... ..++.+.++|+..+|++ .||+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 36899999999998877654 269999999999988885544322 12567788888888775 4999998887
Q ss_pred ccccccc-cceEEEEecccccCCceeeecCh
Q 007128 288 RIDWLQR-DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 l~h~~~~-~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++...+ ...++++++++|||||.|+++..
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5444322 24689999999999999999753
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-11 Score=123.75 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=86.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
.|.+.+.+.+.. .. +.+|||+|||+|.++..+++. .++++|+++.++..++.+ ......++.+...
T Consensus 6 ~~~~~~~~~~~~------~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~ 76 (241)
T PRK08317 6 RYRARTFELLAV------QP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHcCC------CC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEec
Confidence 444555555554 32 368999999999998888653 588999988776655533 1122345677778
Q ss_pred cccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|...+++++++||+|++..++.|+ .++..+++++.++|+|||++++..+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 888888888999999999885554 45577999999999999999987543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-12 Score=115.02 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH-HhCCCcccccccc-cccCCCCCccccccccc-c
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGVLGT-KRLPYPSRSFELAHCSR-C 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~~d~-~~lpf~~~sFDlV~~s~-~ 287 (617)
+.+|||||||+|.++..+++. .|+++|+++.+++.++.+... ....++.+...|+ ...... +.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 368999999999999999883 599999999999888855523 2245678888888 333333 5699999987 4
Q ss_pred ccccc--cccceEEEEecccccCCceeeecC
Q 007128 288 RIDWL--QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~--~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.++. ++...+++++.+.|+|||++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33232 233568999999999999999864
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-12 Score=123.51 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=76.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..|+++ .|+++|+++.++..++ +.+...++++.+...|....+++ ++||+|+|+.++++...
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCH
Confidence 58999999999999999876 5999999998888776 34555666666667777666665 57999999887544432
Q ss_pred -ccceEEEEecccccCCceeeec
Q 007128 294 -RDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 -~~~~~L~el~RvLrPGG~lvis 315 (617)
+...+++++.|+|+|||++++.
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEE
Confidence 3356899999999999996653
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-12 Score=131.26 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhh-HHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQI-QFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~-~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++|||||||+|.++..++.. .|+|+|+++.++..+.. +........+.+..+++..+|.. ++||+|+|..+++|+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhcc
Confidence 68999999999988777664 48999999987754321 11111122455666777888765 489999999886665
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCC-----HHHH-----HHH-----HHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQD-----EEDL-----RIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~-----~~~~-----~~w-----~~l~~l~~~~gf~~v~ 346 (617)
.++..+|++++|+|||||.|++.+....... +... ..| .++...++++||+.+.
T Consensus 202 -~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 202 -KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred -CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 4557899999999999999998643221100 0000 011 6778888999997654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-12 Score=123.44 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=75.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..|+++ .|+++|+|+.++..++. .+...++. +.+.+.|...++++ ++||+|+|+.+++++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLE 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCC
Confidence 58999999999999999876 58999999988887774 34444443 66777787777765 5799999988754332
Q ss_pred c-ccceEEEEecccccCCceeee
Q 007128 293 Q-RDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 293 ~-~~~~~L~el~RvLrPGG~lvi 314 (617)
. +...+++++.++|+|||++++
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 335799999999999999655
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-12 Score=127.53 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=81.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeeccc------ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGL------IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl------~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||++||||-+|..+++... -..|+.+| +++||..+.+|-. +--++.-.|.+| || +|||+|.+...+.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehhh
Confidence 3699999999999999998643 45788888 4799999999854 223444456677 55 9999999999888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++. |++.+|.||.|||||||.+++-+...
T Consensus 131 nv~----d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 131 NVT----DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred cCC----CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 776 99999999999999999999888754
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-12 Score=120.12 Aligned_cols=100 Identities=22% Similarity=0.381 Sum_probs=81.9
Q ss_pred eEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..|++ ..++|+|+++.++..++. .+.+.+. ++.+.+.|+.+++ ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 6899999999999999883 259999999999888874 4444555 5888999998887 66 79999998877
Q ss_pred ccccccccceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+ ++..+...+++++.++|++||.++++.+.
T Consensus 83 l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 L-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp G-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred h-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 55566567999999999999999998766
|
... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-11 Score=118.38 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=82.8
Q ss_pred EEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcc-cccccccccC-CCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAY-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~-~~~~d~~~lp-f~~~sFDlV~~s~~l~h~ 291 (617)
.||+||||||..-.++... .||++|.++.|.+-+....+..+...+. |++++.+++| ++++++|.|+|..++- -
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-S 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-S 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-c
Confidence 5899999999877777632 5999999999988887666666666666 8899999999 8999999999998854 4
Q ss_pred ccccceEEEEecccccCCceeeecC
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
..++.+.|+|+.|+|||||++++..
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 4556789999999999999999863
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-11 Score=124.64 Aligned_cols=97 Identities=23% Similarity=0.406 Sum_probs=76.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++ ++..++.+..+|+..++ ++++||+|+|+.+ +|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~-----~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR-----SRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----HhCCCCeEEECchhccC-CCCCccEEEEccC-hh
Confidence 468999999999999888764 5899999887665443 33334667777877665 4469999999887 56
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|..+...+++++.++|||||.+++..+.
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 7766678999999999999999997544
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-12 Score=113.15 Aligned_cols=92 Identities=29% Similarity=0.499 Sum_probs=70.7
Q ss_pred EEeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 218 VLDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 218 VLDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
|||+|||+|..+..+.+. .++++|+++.++..++. ...+.+.++.+.++|+.++++.+++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~-~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKK-RFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHH-HSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHH-hchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999888877643 58899999988887773 3444567899999999999988899999999665344
Q ss_pred cccc--cceEEEEecccccCCc
Q 007128 291 WLQR--DGILLLELDRLLRPGG 310 (617)
Q Consensus 291 ~~~~--~~~~L~el~RvLrPGG 310 (617)
+..+ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4443 2469999999999998
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-11 Score=121.06 Aligned_cols=99 Identities=26% Similarity=0.490 Sum_probs=78.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..+++. .++++|+++.++..+..... .++.+..+|...+++++++||+|+++.+ +||
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-LQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-hhh
Confidence 68999999999998888764 36888888766544432111 2456777888899988899999999887 566
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
..++..++.++.++|+|||.++++.+..
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 6666789999999999999999986544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-11 Score=115.05 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=93.9
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..++|.|+|||+|..+..|+++ .++|+|-|+.|++ .|+++.+++.|..+|+..+. ++..+|+++++.+ +
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla-----~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-l 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLA-----KAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-L 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHH-----HHHHhCCCCceecccHhhcC-CCCccchhhhhhh-h
Confidence 3478999999999999999886 5888888876654 45578889999999988876 4578999997655 8
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
||.++-..+|..+...|.|||.|.+-.|...-...+ ..|.+.+++.-|..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH-----~~mr~~A~~~p~~~ 152 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSH-----RLMRETADEAPFAQ 152 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECCCccCchhH-----HHHHHHHhcCchhh
Confidence 998887889999999999999999987765433332 34666666666644
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-11 Score=122.41 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=90.8
Q ss_pred ecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHH
Q 007128 179 IFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFA 255 (617)
Q Consensus 179 ~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a 255 (617)
.|+..+.........-.+.+.+.+.+ .+| .+|||||||.|.++.+++++ +|+|+++|++....++ +.+
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L------~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGL------KPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRI 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCC------CCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHH
Confidence 35555545555545555667777776 545 89999999999999999986 5889999887777766 334
Q ss_pred HHhCCC--cccccccccccCCCCCcccccccccccccccc-ccceEEEEecccccCCceeeecC
Q 007128 256 LERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 256 ~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~-~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.|+. +++...|...+ ++.||-|++..++.|+.. ....+++.+.++|+|||.+++-+
T Consensus 116 ~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHcCCCcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 455654 55554444443 355999999888666543 23569999999999999999854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-11 Score=121.83 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+|||||||+|.++..+++. .++++|+++.++..++.+ ..+.++ .+.+...|....|++ ++||+|++..++.|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999988888754 488999988776666533 333333 356677777666665 58999999887655
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCH---HHHH----HHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE---EDLR----IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~---~~~~----~w~~l~~l~~~~gf~~v~ 346 (617)
. .+...+++++.++|+|||++++.++....... .... .-.++.+++++.||+++.
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 4 45578999999999999999997643211000 0000 015677788888886654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-11 Score=118.76 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=87.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccc-cccC--CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~-~~lp--f~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..|++. .|+++|+++.++..++.+.......++.+.++|+ ..++ +++++||+|++...
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 368999999999998888654 5899999998888777443332223577888888 7776 77889999997654
Q ss_pred ccccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.+|... ...+++++.++|||||+|+++.+... ....+.+.++..||..
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------YAEYMLEVLSAEGGFL 176 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--------HHHHHHHHHHhCcccc
Confidence 233221 13478999999999999999764331 1245666677777743
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-11 Score=125.54 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=71.8
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc---------ccchhhhhhhcccCC-cchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL---------IGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl---------~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|+++ +.. .+|+.+|. ++|++.|.+|.- +..+..-.+.++ ++ ++||+|++.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEEe
Confidence 46999999999999988874 210 15777774 689888866521 111222223344 44 899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+++++. ++..+|.||.|+|||||.++|.|-
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9998776 789999999999999999998864
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.5e-11 Score=118.05 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=90.1
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .|+|+|+++.++..++.+.. ..+. ++.+.+.|+..++ ++||+|++..+++|
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 468999999999999999865 58999999988877774433 3333 5677777877765 78999999888766
Q ss_pred ccc-ccceEEEEecccccCCceeeecChhhhcC-CHHHHH--------------HHHHHHHHHHHhhhhhhhcc
Q 007128 291 WLQ-RDGILLLELDRLLRPGGYFAYSSPEAYAQ-DEEDLR--------------IWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 291 ~~~-~~~~~L~el~RvLrPGG~lvis~p~~~~~-~~~~~~--------------~w~~l~~l~~~~gf~~v~~~ 348 (617)
+.. +...++.++.+++++++++.+........ ...... .-+++.++++.+||+++..+
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 643 33568899999999888777753221100 000000 01678888888888776543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-11 Score=124.60 Aligned_cols=124 Identities=19% Similarity=0.358 Sum_probs=80.1
Q ss_pred cCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHH
Q 007128 180 FPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFAL 256 (617)
Q Consensus 180 Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~ 256 (617)
|+.+...+.....+-.+.+.+.+.+ ++| .+|||||||.|.++.+++++ .|+|+++|+.....++ +.+.
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l------~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~ 106 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGL------KPG--DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIR 106 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--------TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCC------CCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHH
Confidence 4444444544444445556666655 444 79999999999999999987 4778877775555544 3344
Q ss_pred HhCCC--cccccccccccCCCCCccccccccccccccc-cccceEEEEecccccCCceeeec
Q 007128 257 ERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 257 ~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~-~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.|+. +.+...|..+++. +||.|++..++.|.. .+...+++++.++|+|||.+++.
T Consensus 107 ~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 107 EAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp CSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred hcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 55654 5666677766654 899999998877763 33357999999999999999975
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-11 Score=117.42 Aligned_cols=161 Identities=23% Similarity=0.308 Sum_probs=106.8
Q ss_pred ccccCchhhHHHHHHhHhcCCCCC-------CCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHH
Q 007128 185 THFHYGADKYIASIANMLNFSNDN-------INNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFA 255 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~-------l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a 255 (617)
+.|++.+..|...+.+.|...... ....+..+++||+|||||.++..|... .++|+|||.+| +..|
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nM-----l~kA 163 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENM-----LAKA 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHH-----HHHH
Confidence 456666666655544333321100 013344789999999999999998765 67888777655 4566
Q ss_pred HHhCCCcccccccccc-cC-CCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCC---HHHHHHH
Q 007128 256 LERGIPAYLGVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD---EEDLRIW 330 (617)
Q Consensus 256 ~~rg~~~~~~~~d~~~-lp-f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~---~~~~~~w 330 (617)
.++++.-.+.+++... ++ ..++.||+|++..+ +.+....+.++.-+...|+|||.|.+|+-...... -.....|
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry 242 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY 242 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence 6788766666666543 22 45678999999887 45677777899999999999999999853221110 0001112
Q ss_pred ----HHHHHHHHHhhhhhhhccCce
Q 007128 331 ----KEMSALVERMCWRIAAKRNQT 351 (617)
Q Consensus 331 ----~~l~~l~~~~gf~~v~~~~~~ 351 (617)
..+..+++..||+++..+..+
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeeccc
Confidence 557888999999887765433
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-11 Score=126.54 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=73.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----c---ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----L---IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.|.++. + +..++.-.+.++..+++||+|.|..++.|
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999998776 5777774 68888776552 1 11222222444433489999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. ++..+|.|+.|+|||||.++|...
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 87 789999999999999999998853
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-11 Score=115.76 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=87.2
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++. .+.+.++ ++.+..+|+..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 36899999999998887764 269999999998888874 4444555 47788888888776 679999997632
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.+...++.++.++|||||++++..+... -..+..+.+.+||.+.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEe
Confidence 2335688999999999999998743321 1457778888898654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-11 Score=119.71 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=74.7
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-------CcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-------PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-------~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+++|||+|||+|.++..|++. .|+|+|++..++..|+.. +...-+ ...+.+.+.+.+. +.||+|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 367999999999999999986 699999999988888754 321111 1223334444432 459999999
Q ss_pred ccccccccccceEEEEecccccCCceeeecChhh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+++|. .++..++..+.+.|||||.+++++-+.
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 996655 555789999999999999999986443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.5e-12 Score=117.33 Aligned_cols=96 Identities=23% Similarity=0.393 Sum_probs=69.9
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
.-.+|||+|||+|.++..|++.+. .++.+|. +.+++. +......++-. .....+++||+|+|..+|+|+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~-~~~~~~~~fD~i~~~~~l~~~~-- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQ-DPPFPDGSFDLIICNDVLEHLP-- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECH-THHCHSSSEEEEEEESSGGGSS--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhh-hhhccccchhhHhhHHHHhhcc--
Confidence 344799999999999999999888 4555553 344332 22212212111 1111239999999999999987
Q ss_pred CCCcccchhhccccccCcceEEEecChh
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..+|.+|.|+|||||+++|.++..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 78999999999999999999999863
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-11 Score=124.50 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=77.0
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~- 292 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++ +.+.+.++++.+...|....++ +++||+|++..++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 48999999999999999875 5999999998888766 4556667777777777766655 57899999887754432
Q ss_pred cccceEEEEecccccCCceeeec
Q 007128 293 QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis 315 (617)
++...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13356899999999999997664
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-11 Score=125.20 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc------ccchhh
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL------IGSIHN 509 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl------~~~~~~ 509 (617)
..|++.+... +. ...+ ..|||++||+|-++..|+++-..-..|+.+|. ++||+++.+|.- |-.+..
T Consensus 33 ~~wr~~~~~~---~~--~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKL---LG--LRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHH---HT----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhc---cC--CCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 6677755442 22 2222 27999999999999999875322236777774 799999988732 222222
Q ss_pred hhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 510 WCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 510 ~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
-.+.+| || ++||.|.+...+..+. |+..+|.||.|||||||.++|-|...
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~~----d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNFP----DRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S----SHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhhC----CHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 234455 44 9999999988888665 88999999999999999999887654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-10 Score=118.77 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=73.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
...+|||+|||+|.++..|++.+. .|+.+|. +.|++.+.++.. ...+..-.+.++..+++||+|.++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcC-
Confidence 455799999999999999988765 5666674 688877776642 1111111133332238999999998888655
Q ss_pred cCCCcccchhhccccccCcceEEEecCh
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++..+|.|+.|+|||||.+++....
T Consensus 118 ---d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 ---NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7889999999999999999998543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-11 Score=122.02 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=75.8
Q ss_pred ceeEEEeecccccc----ccccccc---------chhhhhccCCCccchhhhHHH---HHhC------------------
Q 007128 214 RLRTVLDVGCGVAS----FGAYLLS---------SDVITMSLAPNDVHQNQIQFA---LERG------------------ 259 (617)
Q Consensus 214 ~~~~VLDVGCG~G~----~~~~L~~---------~~V~gvDis~~dl~~a~~~~a---~~rg------------------ 259 (617)
+..+|||+|||+|. ++..|++ ..|+|+|+++.+++.|+...- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34789999999994 4444432 258999999988877764210 0001
Q ss_pred ------CCcccccccccccCCCCCccccccccccccccccc-cceEEEEecccccCCceeeecC
Q 007128 260 ------IPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 260 ------~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
-.+.|.+.|....++++++||+|+|.++++++..+ ...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13677788888888878899999999987766432 2469999999999999999963
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-11 Score=133.17 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=79.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--CCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--YPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--f~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..+++. .++|+|+++.++..++.+ +...+.++.+.++|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 68999999999988777643 699999999888877643 2333456667778888887 7889999999887765
Q ss_pred cccc------------ccceEEEEecccccCCceeeecCh
Q 007128 290 DWLQ------------RDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~------------~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++.. +...+|+++.|+|||||++++.+.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5431 234689999999999999999754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-10 Score=110.86 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=121.0
Q ss_pred hhhhhhhHHHHHHHHH---HHH--Hhhccc---cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe
Q 007128 429 SEMFEKDTESWRNRVD---SYW--NLLSPK---IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY 499 (617)
Q Consensus 429 ~e~F~~D~~~Wk~~V~---~y~--~~l~~~---i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~ 499 (617)
+..|..-++.+...+- .|. .+|.++ .+.+..+.+||+|||||-++.+|.+..- -++.+|. .|||..|.
T Consensus 88 e~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 88 ETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAH 164 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHH
Confidence 3456666777765442 343 223332 4557799999999999999999988533 5778885 79999999
Q ss_pred eccccc-chhhhhhhcc--cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------
Q 007128 500 DRGLIG-SIHNWCEAYS--TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------ 564 (617)
Q Consensus 500 ~rgl~~-~~~~~~e~~~--~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------ 564 (617)
+||+.- .+|.=...|. .-++.||||.+..||+++- +++.++.=..+.|.|||.|+++...-
T Consensus 165 eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG----~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~ 240 (287)
T COG4976 165 EKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG----ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ 240 (287)
T ss_pred hccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc----chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh
Confidence 999843 2332223344 2349999999999999998 89999999999999999999986543
Q ss_pred ----HHHHHHHhhhhcccccccccccCC--CCCCCCCCeEEEEEEec
Q 007128 565 ----VVDFVKKYLRALNWEAVATTADAS--SDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 565 ----~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~l~~~K~ 605 (617)
.-..|+..+.+-+.++| .+.++- .+.+..-+..+.|++|+
T Consensus 241 RyAH~~~YVr~~l~~~Gl~~i-~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 241 RYAHSESYVRALLAASGLEVI-AIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hhccchHHHHHHHHhcCceEE-EeecccchhhcCCCCCCceEEEecC
Confidence 23458899999999987 554321 12233345667778775
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-10 Score=116.37 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=89.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.-.-..+|+.+|. +++++.+.++ ++ +..++.-.+.++ ++ ++||+|++..++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecccc
Confidence 46999999999999999864100114555563 5666555443 22 111221112222 34 8999999988888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh-------------------------------------------HHHH
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------------------------------------VVDF 568 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------------------------------------~~~~ 568 (617)
++. +...+|.|+.|+|||||++++.+... ..++
T Consensus 126 ~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 126 NVP----DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cCC----CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 665 67889999999999999999876421 1256
Q ss_pred HHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 569 VKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 569 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++++++.+++.+ ++.. ...+...+.+++|
T Consensus 202 l~~~l~~aGf~~~-~~~~-----~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDV-EVKS-----YTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCee-EEEE-----cccceEEEEEEEC
Confidence 7888889898875 4443 2245667777776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-10 Score=113.25 Aligned_cols=97 Identities=24% Similarity=0.450 Sum_probs=76.2
Q ss_pred eEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.++||+|||.|..+.+|++++ |+++|+++..++..+ +.|.+.++++...+.|.....++ +.||+|++..++ ++..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~-~fL~ 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVF-MFLQ 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSG-GGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEe-ccCC
Confidence 489999999999999999984 999999998887765 67888889988888998888776 689999976554 4444
Q ss_pred cc--ceEEEEecccccCCceeeec
Q 007128 294 RD--GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 ~~--~~~L~el~RvLrPGG~lvis 315 (617)
.. ..++..+...++|||++++.
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 32 34788999999999999985
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-10 Score=114.09 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=69.1
Q ss_pred eeEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
..+|||||||+|.++..|++ ..|+|+|+++.++..++.+. ... ++.+.+.+...+++++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~--~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRP--GVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccC--CCeEEEEecccccccCCCccEEEECC
Confidence 46899999999998887764 15899999998877665322 122 34455556667777788999999999
Q ss_pred cccccccc-cceEEEEecccccCCceeeec
Q 007128 287 CRIDWLQR-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 287 ~l~h~~~~-~~~~L~el~RvLrPGG~lvis 315 (617)
+++|..++ ...+++++.|+++ |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 86555433 2359999999998 444443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-10 Score=109.12 Aligned_cols=152 Identities=18% Similarity=0.289 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcC--CceEEEEeecCCC-CCceEEEeec----cc--ccch
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSI 507 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~ 507 (617)
+.|++++-+-..+. ..+.. -.+|||+|||+|.++..++. .+. .|+.+|. +.|++.|.++ |+ +-.+
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~~---~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPEL---KVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 47887775433222 22332 24699999999999988874 334 5666664 5666555432 33 2223
Q ss_pred hhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccC
Q 007128 508 HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 508 ~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
+.-.+.+.. +++||+|.++.. .+++.++.++.|+|||||.+++-+......++..++..++|...+.++-
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 170 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL- 170 (187)
T ss_pred eccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE-
Confidence 332333333 479999998542 2567899999999999999999999999999999999999997533332
Q ss_pred CCCCCCCCCeEEEEEEec
Q 007128 588 SSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~ 605 (617)
+. ++-.++.-+.|.+|+
T Consensus 171 ~~-~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 171 TL-PGLDGERHLVIIRKK 187 (187)
T ss_pred ec-CCCCCcEEEEEEecC
Confidence 12 233455667777774
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-10 Score=118.97 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=72.9
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.-..|||+|||+|.++..|+++ +. .|+.+|. +.|++.|.++++--...+. +.++ .+++||+|+++.+|+|+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC
Confidence 3357999999999999999886 34 5667774 6888888887751111121 2222 238999999999999886
Q ss_pred hcCCCcccchhhccccccCcceEEEec
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++..+|.++.|+|||||+++|..
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEEc
Confidence 77899999999999999999964
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-10 Score=111.35 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ...++.+..+|+..+++++++||+|+++.++
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~- 116 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL- 116 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee-
Confidence 468999999999998887654 47788887765554442222 1234667778888888888899999988774
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|+..+...+++++.++|+|||++++..
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 445555779999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-11 Score=116.05 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=77.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++++. +|+.+|. +.+++.+.++ |+ ..++.-+.++.. ++.+||+|.|..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 4699999999999999999876 5666674 5666554432 33 112222223322 3578999999999876
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
+. ..+...++.+|.|+|||||++++-...+ ..+++.+.+. .|+.+
T Consensus 108 ~~--~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~ 166 (197)
T PRK11207 108 LE--AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMV 166 (197)
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEE
Confidence 54 2256789999999999999965532211 2345777776 67764
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-10 Score=117.14 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=71.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cccc---chhhhhhhcccC-Ccchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIG---SIHNWCEAYSTY-PRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~---~~~~~~e~~~~~-p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++.+. +|+.+|. ++|++.|.++ |+.. .++.-.+.+..+ +++||+|.|+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999999876 5667774 6787777654 3321 122111223323 4899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|+. ++..+|.++.|+|||||.++|..
T Consensus 123 ~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVA----DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9886 67899999999999999998764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-10 Score=124.29 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhh---hhhcccCC-cchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNW---CEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~---~e~~~~~p-~tfDlvh~~~ 528 (617)
-.+|||+|||+|+++..|+++ +. +|+.+|. +.|++.+.++ |+...+... .+.++ ++ ++||+|++..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECC
Confidence 346999999999999999985 55 4555553 4565544332 431111111 12222 33 8999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.|+. +...+|.||.|+|||||.|+|.+
T Consensus 195 ~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 998876 77899999999999999999865
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-10 Score=119.19 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=67.8
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccc-cchhhhhhhcc--cCC-cchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLI-GSIHNWCEAYS--TYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~-~~~~~~~e~~~--~~p-~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|+++..|++. ++ .|+.+|. +++++.+.++..- ..+...+.++. .|| ++||+|++..++.|+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 35999999999999999764 44 4666663 5676666554210 01111112211 244 899999998888765
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. ..+...+|.|+.|+|||||+|+|.|.
T Consensus 131 ~--~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 131 S--YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred C--HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 12678899999999999999999875
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-10 Score=109.86 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=71.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+|||+|.++..++.. .|+++|+++.+++.++ +.+.+.++ ++.+..+|+..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 368999999999988877642 5999999998887666 34444454 4778888888765 357999998753 2
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.. ..+++.+.++|+|||.+++..
T Consensus 119 ~~~---~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASL---NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCH---HHHHHHHHHhcCCCCEEEEEc
Confidence 222 346778899999999999863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-10 Score=114.21 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=85.7
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCc
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPA 262 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~ 262 (617)
..|...++.|.-...+.+... ..+ .+.++|||||+|..+.-+++. +|+|+|+++.|+. .+.+. .++
T Consensus 10 ~~Y~~ARP~YPtdw~~~ia~~-----~~~-h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~-----~a~k~-~~~ 77 (261)
T KOG3010|consen 10 ADYLNARPSYPTDWFKKIASR-----TEG-HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLK-----VAKKH-PPV 77 (261)
T ss_pred HHHhhcCCCCcHHHHHHHHhh-----CCC-cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHH-----HhhcC-CCc
Confidence 445555666654444444330 223 348999999999777777765 7999988876654 44333 222
Q ss_pred ccc-----cccccccCCC--CCccccccccccccccccccceEEEEecccccCCc-eeeecChhhhcCCHHHHHHHHHHH
Q 007128 263 YLG-----VLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFAYSSPEAYAQDEEDLRIWKEMS 334 (617)
Q Consensus 263 ~~~-----~~d~~~lpf~--~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG-~lvis~p~~~~~~~~~~~~w~~l~ 334 (617)
.+. ..+.+..++. ++|.|+|+|.+| +||.+. +++.+++.|+||+.| .+++=..+.. .-.|.+..
T Consensus 78 ~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWFdl-e~fy~~~~rvLRk~Gg~iavW~Y~dd------~v~~pE~d 149 (261)
T KOG3010|consen 78 TYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWFDL-ERFYKEAYRVLRKDGGLIAVWNYNDD------FVDWPEFD 149 (261)
T ss_pred ccccCCccccccccccccCCCcceeeehhhhh-HHhhch-HHHHHHHHHHcCCCCCEEEEEEccCC------CcCCHHHH
Confidence 221 2222333443 899999999999 789876 789999999999877 5544111111 11144555
Q ss_pred HHHHHhhhh
Q 007128 335 ALVERMCWR 343 (617)
Q Consensus 335 ~l~~~~gf~ 343 (617)
.++.+.+++
T Consensus 150 sv~~r~~~~ 158 (261)
T KOG3010|consen 150 SVMLRLYDS 158 (261)
T ss_pred HHHHHHhhc
Confidence 566666653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-10 Score=121.40 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=90.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe--ec--ccccchhhh---hhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY--DR--GLIGSIHNW---CEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~--~r--gl~~~~~~~---~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+.|||+|||+|.++..|+..+.. .|+.+|. +.|+..+. .+ +....++-. .+.++. +.+||+|.|.+++.
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 57999999999999999887652 3455552 34432210 01 000111111 123332 36899999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh------------h------------HHHHHHHhhhhcccccccccccC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------S------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------~------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|+. ++.++|.|+.|+|||||.|++.+.. . ...+++.++++.+++.+ ++++
T Consensus 200 H~~----dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V-~i~~- 273 (314)
T TIGR00452 200 HRK----SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF-RILD- 273 (314)
T ss_pred ccC----CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE-EEEe-
Confidence 775 8899999999999999999986321 0 24568888999999987 5554
Q ss_pred CCCCCCCCCeEEEEEEecccccCCCCCC
Q 007128 588 SSDSDKDGDEVVFIVQKKIWLTSESLRD 615 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~~w~~~~~~~~ 615 (617)
...- ... =-+|+=|-..+|+.+
T Consensus 274 -~~~t-t~~----eqr~t~w~~~~sl~~ 295 (314)
T TIGR00452 274 -VLKT-TPE----EQRKTDWILGESLED 295 (314)
T ss_pred -ccCC-CHH----HhhhhhhhhccchHh
Confidence 1111 111 235777877776653
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-10 Score=111.52 Aligned_cols=101 Identities=16% Similarity=0.264 Sum_probs=75.7
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC---CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
.+|||||||+|.++..++.+ .++|+|+++.++..+..+. .+.++ ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 58999999999999888865 5899999998887776433 33343 5778888887654 55679999987654
Q ss_pred cccccccc--------ceEEEEecccccCCceeeecChh
Q 007128 288 RIDWLQRD--------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~~~~--------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+|.... ..+++++.|+|||||.|++.+..
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3443321 24788999999999999997543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.2e-10 Score=110.94 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=76.9
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||+|||+|.++..++. ..++++|+++.++..++.+..... ..++.+...|...+++++++||+|+++.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 36899999999998877764 358899998877776664332211 234667778888888877899999998875
Q ss_pred cccccccceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|+..+...++.++.++|+|||++++..
T Consensus 132 -~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 -RNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred -ccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 444555778999999999999998753
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-10 Score=118.89 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=65.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHH-----hCCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALE-----RGIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~-----rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++.+.... ....+.+...|...+ +++||+|+|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 368999999999999999876 5899999999998877443321 022345666665443 578999999998
Q ss_pred cccccccc-ceEEEEecccccCCceeee
Q 007128 288 RIDWLQRD-GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 288 l~h~~~~~-~~~L~el~RvLrPGG~lvi 314 (617)
++|+.++. ..+++.+.+ +.+||.++.
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 87765542 224455554 456655443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-10 Score=112.67 Aligned_cols=101 Identities=18% Similarity=0.025 Sum_probs=74.7
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH------------HhCCCcccccccccccCCC-CCccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL------------ERGIPAYLGVLGTKRLPYP-SRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~------------~rg~~~~~~~~d~~~lpf~-~~sFD 280 (617)
.+|||+|||.|..+..|+++ .|+|+|+|+..++.++.+... .++..+.+.++|+..++.. .+.||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 58999999999999999987 599999999877754321110 1234567788888877643 35799
Q ss_pred ccccccccccccccc-ceEEEEecccccCCceeeecC
Q 007128 281 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 281 lV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~ 316 (617)
.|+-..+++|...+. ..++..+.++|||||++++.+
T Consensus 116 ~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 116 AVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 998776666654432 458999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-10 Score=122.90 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=74.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++++ .|+++|+++.++..++. .....++...+...|... ..++.||+|+|+..++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~-nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA-TLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 37999999999999888764 58999999988888774 344455665555555433 235789999998764321
Q ss_pred c----cccceEEEEecccccCCceeeecChhhh
Q 007128 292 L----QRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 292 ~----~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
. .....++.++.+.|+|||.|+++.....
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 1 1224689999999999999999865543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-10 Score=109.66 Aligned_cols=94 Identities=28% Similarity=0.448 Sum_probs=68.7
Q ss_pred eEEEeecccccccccccccc-h--hhhhccCCCccchhhhHHHHHhCCCccccccccccc-CCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-D--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-PYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-pf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||.|.+..+|.+. + ..|+|+++ +.+..+.++|+++.-..++. .| .|++++||.|++++++-+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~- 87 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQA- 87 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHh-
Confidence 68999999999999999874 3 45565544 55667778898854443332 34 499999999999998554
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...+..+|.|+.|+ |...+++-|+.
T Consensus 88 ~~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 88 VRRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HhHHHHHHHHHHHh---cCeEEEEecCh
Confidence 44557788888666 56777776665
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-10 Score=116.13 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=73.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++ +.+.+.++ .+.+..+|+...++++ +|+|++++++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 368999999999999888875 4778887 44555544 34444444 3667778877666653 7999988887
Q ss_pred ccccccc-ceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
++|.++. ..+|++++++|+|||++++.+.
T Consensus 226 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6665442 4689999999999999999753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-10 Score=117.99 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=89.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE--eeccc-----ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI--YDRGL-----IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~--~~rgl-----~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+.|||+|||+|.++..|++.+.. .|+.+|. +.++..+ ..+.. +-.+..-.+.++. +++||+|+|..++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 57999999999999999987642 2445552 3333211 01100 1111111133443 68999999999998
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh------------h------------HHHHHHHhhhhcccccccccccC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------S------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------~------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|.. ++..+|.++.|+|||||.+++.+-. . ..+++..++.+.+++.+ ++.+.
T Consensus 201 H~~----dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i-~~~~~ 275 (322)
T PRK15068 201 HRR----SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV-RIVDV 275 (322)
T ss_pred ccC----CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE-EEEeC
Confidence 765 7889999999999999999986311 0 23568889999999987 66552
Q ss_pred CCCCCCCCCeEEEEEEecccccCCCCC
Q 007128 588 SSDSDKDGDEVVFIVQKKIWLTSESLR 614 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~~w~~~~~~~ 614 (617)
...+.+ --+|+-|-..+|+.
T Consensus 276 --~~t~~~-----eqr~t~w~~~~sl~ 295 (322)
T PRK15068 276 --SVTTTE-----EQRKTEWMTTESLA 295 (322)
T ss_pred --CCCCcc-----ccccccCcccCcHh
Confidence 211111 12367776655543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-09 Score=114.04 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred CccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC
Q 007128 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI 260 (617)
Q Consensus 184 ~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~ 260 (617)
+..|..+.........+++.. +.. ++.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~----~~~--~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~ 207 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLED----LDL--KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQV 207 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHh----hcC--CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCC
Confidence 445655555444444455443 112 2368999999999888777654 58999999988887774 3444444
Q ss_pred Ccc--cccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHH
Q 007128 261 PAY--LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVE 338 (617)
Q Consensus 261 ~~~--~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~ 338 (617)
... +...+ ..++.+++||+|+++.. .+. ...++.++.++|||||+++++..... ...++.+.++
T Consensus 208 ~~~~~~~~~~--~~~~~~~~fDlVvan~~-~~~---l~~ll~~~~~~LkpgG~li~sgi~~~--------~~~~v~~~~~ 273 (288)
T TIGR00406 208 SDRLQVKLIY--LEQPIEGKADVIVANIL-AEV---IKELYPQFSRLVKPGGWLILSGILET--------QAQSVCDAYE 273 (288)
T ss_pred CcceEEEecc--cccccCCCceEEEEecC-HHH---HHHHHHHHHHHcCCCcEEEEEeCcHh--------HHHHHHHHHH
Confidence 322 22222 23445678999998643 222 23578899999999999999865321 1245555555
Q ss_pred Hhhhhhh
Q 007128 339 RMCWRIA 345 (617)
Q Consensus 339 ~~gf~~v 345 (617)
+. |+.+
T Consensus 274 ~~-f~~~ 279 (288)
T TIGR00406 274 QG-FTVV 279 (288)
T ss_pred cc-Ccee
Confidence 54 6554
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-10 Score=109.34 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 212 EGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 212 ~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.....++||+|||.|.++..|+.+ .++++|+++..++.++.+.+.. .++.+.++++... .|+++||+|+++.+++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 345688999999999999999987 6999999987776666444332 3577787777554 4678999999998855
Q ss_pred cccc--ccceEEEEecccccCCceeeecC
Q 007128 290 DWLQ--RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~--~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+.+ +...++..+...|+|||.+++.+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4432 23458899999999999999964
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-09 Score=102.98 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=90.5
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc-ccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRL 272 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~-~~l 272 (617)
+...++|.+ +.+...-|||||||+|..+..|.+. .++|+|+|+.|++.|+.+ .+...+..+|. +-+
T Consensus 38 eRaLELLal------p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-----e~egdlil~DMG~Gl 106 (270)
T KOG1541|consen 38 ERALELLAL------PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-----ELEGDLILCDMGEGL 106 (270)
T ss_pred HHHHHHhhC------CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-----hhhcCeeeeecCCCC
Confidence 334455555 4445678999999999999999875 478999999998877742 22223333442 779
Q ss_pred CCCCCcccccccccccccccccc-----------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 273 PYPSRSFELAHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 273 pf~~~sFDlV~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
||..++||.|++..+ ++|.-+. ..++..++.+|++|+..++.. |+..+... +.+.+.+..+|
T Consensus 107 pfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf---Ypen~~q~---d~i~~~a~~aG 179 (270)
T KOG1541|consen 107 PFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF---YPENEAQI---DMIMQQAMKAG 179 (270)
T ss_pred CCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe---cccchHHH---HHHHHHHHhhc
Confidence 999999999997644 5774332 126888999999999999853 33333322 55666677777
Q ss_pred hh
Q 007128 342 WR 343 (617)
Q Consensus 342 f~ 343 (617)
|.
T Consensus 180 F~ 181 (270)
T KOG1541|consen 180 FG 181 (270)
T ss_pred cC
Confidence 73
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-10 Score=100.40 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeeccc-cc-----chhhhhhhc-ccCC-cchhhhhhhhhhhhh
Q 007128 463 MDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGL-IG-----SIHNWCEAY-STYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl-~~-----~~~~~~e~~-~~~p-~tfDlvh~~~~~~~~ 533 (617)
||+|||+|.++..|++.- ....++.+| ++.|++.+.+|-- .+ .+..-..+. ...+ ++||+|.+..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998872 223667777 4788877766632 11 111111222 2222 599999999999999
Q ss_pred hhcCCCcccchhhccccccCcceE
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ 557 (617)
. ++..+|..+.++|||||.+
T Consensus 80 ~----~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E----DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-----HHHHHHHHTTT-TSS-EE
T ss_pred h----hHHHHHHHHHHHcCCCCCC
Confidence 5 8899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-09 Score=106.32 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=68.1
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+. ...+. ++.+..+|........++||+|++..+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 68999999999988777642 5899999998877666333 33443 2667777876654456799999987664
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+. ..++.++|+|||++++.
T Consensus 153 ~~~-------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI-------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh-------hHHHHHhcCcCcEEEEE
Confidence 332 24688999999999884
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-09 Score=97.94 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=69.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..+++. .|+++|+++.+++.++.........++.+...|... ++...++||+|++..+..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh
Confidence 58999999999999888764 589999999888777643333222245565566543 3333468999998654221
Q ss_pred cccccceEEEEecccccCCceeeecC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
...+++++.++|+|||++++..
T Consensus 101 ----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 101 ----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----HHHHHHHHHHHcCCCCEEEEEe
Confidence 2368999999999999999863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-10 Score=120.50 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=71.3
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..+++. .|+++|+|+.++..++.+. .++.+.+...|...+ +++||+|++..++.|.
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 368999999999999988764 5888998887766655322 234455666666554 4689999988775554
Q ss_pred cc-ccceEEEEecccccCCceeeecC
Q 007128 292 LQ-RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~-~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.. +...+++++.++|||||++++..
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 22 23568999999999999999964
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-09 Score=113.75 Aligned_cols=144 Identities=20% Similarity=0.247 Sum_probs=94.3
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP 261 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~ 261 (617)
..|..|...-.....+.|.. ...++++|||+|||+|.++...++. .++|+|+++..+..++ ..++.++++
T Consensus 139 lAFGTG~HpTT~lcL~~Le~------~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~ 211 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEK------LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVE 211 (300)
T ss_pred cccCCCCChhHHHHHHHHHH------hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCc
Confidence 34655554444455555544 2224579999999999887776654 4899999998888877 466666766
Q ss_pred cccccccccccCCCC-CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 262 AYLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 262 ~~~~~~d~~~lpf~~-~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
......-...+..+. +.||+|+++-. - +....+..++.+.|||||++++|+.-.. .-+.+.+.+.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~DvIVANIL-A---~vl~~La~~~~~~lkpgg~lIlSGIl~~--------q~~~V~~a~~~~ 279 (300)
T COG2264 212 LLVQAKGFLLLEVPENGPFDVIVANIL-A---EVLVELAPDIKRLLKPGGRLILSGILED--------QAESVAEAYEQA 279 (300)
T ss_pred hhhhcccccchhhcccCcccEEEehhh-H---HHHHHHHHHHHHHcCCCceEEEEeehHh--------HHHHHHHHHHhC
Confidence 311111122223333 59999998742 2 2224578889999999999999973321 125567777788
Q ss_pred hhhhhhc
Q 007128 341 CWRIAAK 347 (617)
Q Consensus 341 gf~~v~~ 347 (617)
||+++..
T Consensus 280 gf~v~~~ 286 (300)
T COG2264 280 GFEVVEV 286 (300)
T ss_pred CCeEeEE
Confidence 9976653
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.9e-10 Score=106.88 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=84.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++.+. ...+..+.+..+|....+ .++||+|+++...++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 57999999999999888876 4899999998887776443 344556666777765543 358999998865443322
Q ss_pred c--------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 294 R--------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 294 ~--------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
. ...++.++.|+|+|||.+++..+.... -.++...+++.||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--------~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--------EPDTFDKLDERGFRYE 161 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--------hHHHHHHHHhCCCeEE
Confidence 1 123688999999999999987533211 1456677788888543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-09 Score=111.55 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=86.7
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh-CCC--cccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER-GIP--AYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r-g~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+++|||||||.|.++-.|+.+ .|+|+|.++... .|.+++++- +.. +.+.-..++.+|. .++||+|+|..++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 369999999999999998876 388888776543 332333222 222 2233346788887 6899999999887
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhc-----CCHH-----HHHHH-----HHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEE-----DLRIW-----KEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~-----~~~~w-----~~l~~l~~~~gf~~v~ 346 (617)
.|..++ -..|.++...|+|||.+++-+..... ..+. -...| ..+...++++||+.+.
T Consensus 193 YHrr~P-l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 193 YHRRSP-LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hccCCH-HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 775554 67999999999999999974321100 0000 00112 6788999999997553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-09 Score=109.13 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=82.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc----cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR----LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~----lpf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+++|+++.|++... +.++++ .++.+..+|+.. .++. ++||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 368999999999999988875 4999999998887655 344433 345566666653 1223 5699998542
Q ss_pred cccccccccceEEEEecccccCCceeeecChhh--hcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA--YAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
. . ......++.++.|+|||||+++++.+.. .+..+. .+.+++..+.++.+||+.+..
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHcCCeEEEE
Confidence 2 1 1111246899999999999999953321 111111 233455668888899976643
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-09 Score=108.04 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=70.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..|++. .++|+|+++.++..++ ++...+.+.++|+.. |+++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~-----~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK-----AYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH-----hhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 57999999999998888654 4888988887665554 332345566777777 8889999999999887776
Q ss_pred ccc-cceEEEEecccccCCceeeecC
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
.++ ...+++++.|++ ++++++..
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 422 356889999998 46777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.75 E-value=8e-10 Score=110.69 Aligned_cols=114 Identities=24% Similarity=0.368 Sum_probs=79.7
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcc--cCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYS--TYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~--~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||+|+++..+++. ++ +|+.+|. +++++.+.++ |+-..+.....++. .++.+||+|++..+|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence 5899999999999999865 34 3444443 4555555443 33221121112221 2358999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~ 581 (617)
|+. ++..++.++.|+|||||++++.+... ...++.+++.+.+++.+
T Consensus 79 ~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 79 HIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred hCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 876 67899999999999999999987531 24567778888888875
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-09 Score=105.23 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-Ccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLG 265 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~ 265 (617)
+.....+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.... ..+. ++.+.
T Consensus 62 p~~~~~~~~~l~~------~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~ 132 (212)
T PRK13942 62 IHMVAIMCELLDL------KE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVI 132 (212)
T ss_pred HHHHHHHHHHcCC------CC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEE
Confidence 3444555566554 33 368999999999998777643 58999999988777764433 3344 47788
Q ss_pred cccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 266 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 266 ~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+|......+.+.||+|++.....+ ....+.+.|||||++++.
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEE
Confidence 8887766666789999997654322 334678899999999984
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-09 Score=104.74 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=61.7
Q ss_pred hhhccCCCccchhhhHHHHHh---CCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeee
Q 007128 238 ITMSLAPNDVHQNQIQFALER---GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 238 ~gvDis~~dl~~a~~~~a~~r---g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvi 314 (617)
+|+|+|+.|+..++.+..... ..++.+.++|+.++|+++++||+|+++.++ |+..+...+|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 478999999888764332211 225788899999999999999999999875 4445667899999999999999987
Q ss_pred cC
Q 007128 315 SS 316 (617)
Q Consensus 315 s~ 316 (617)
.+
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 64
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-09 Score=108.51 Aligned_cols=101 Identities=20% Similarity=0.357 Sum_probs=74.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-CCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-YPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..+.+. .++++|+++..+..++... ...+..+.+...+...++ ..+++||+|+++.++.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 368999999999998888765 4888999887766555332 223445556666666554 345789999998875544
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+...+|+++.++|+|||+++++.+
T Consensus 128 -~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 -PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4446789999999999999998754
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-09 Score=108.98 Aligned_cols=101 Identities=19% Similarity=0.350 Sum_probs=75.8
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC-CCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP-SRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..++ ++.+...+...++.. .++||+|++..++ +
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l-~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL-E 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH-H
Confidence 468999999999988877654 48888988877766653332 3344 466666777666654 3789999998774 4
Q ss_pred cccccceEEEEecccccCCceeeecCh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+..++..++.++.++|+|||.++++..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 555557799999999999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-09 Score=109.89 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=70.7
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|.++..|++. +. +|+.+|. ++|++.+.++.- .++...+.++.-+++||+|.+..++.|+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--- 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVADD--KVVGSFEALPFRDKSFDVVMSSFALHASD--- 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhccc--eEEechhhCCCCCCCEEEEEecChhhccC---
Confidence 47999999999999999987 44 6788884 799998877642 22333345542239999999999888665
Q ss_pred CCcccchhhccccccCcc-eEEEecC
Q 007128 538 CSGEDLLLEMDRILRPTG-FVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG-~~ii~~~ 562 (617)
+++.+|.||.|+|||.+ .+.+..+
T Consensus 125 -d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred -CHHHHHHHHHHHhcCceEEEEeCCC
Confidence 88999999999999954 3444433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-09 Score=110.92 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=76.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..-.+|||+|||+|.++..|++. +. +|+.+|. +.|++.+.++.- +..+..-.+.+. .+++||+|+++.+|++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhh
Confidence 44467999999999999999875 33 4666664 567766655421 111111011111 2379999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh----HHHHHHHhhhhccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~~~~w~~ 580 (617)
+. +...+|.+|.|+|||||.+++..+.. ....++++.....|..
T Consensus 106 ~~----d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 106 LP----DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred CC----CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 76 67899999999999999999964321 1122444544445543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-09 Score=106.03 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhcccc----CccchhhHHHhhhcchhhHhhhc-CCceEEEEeecCCCCCceEEEeecc-----c-cc
Q 007128 437 ESWRNRVDSYWNLLSPKI----QSNSLRNLMDMKAHLGSFAAALK-EKDVWVMSVVPEDGPNTLKLIYDRG-----L-IG 505 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i----~~~~~r~vLD~g~G~G~fa~~L~-~~~~~v~~v~~~~~~~~l~~~~~rg-----l-~~ 505 (617)
..+.+.++.|++.|-..+ ..+.=--||.+|||+|.---++- ..+..|.-+.| +++|-+++..+- + +.
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDp--n~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDP--NEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCC--cHHHHHHHHHHHhhccCcceE
Confidence 444556666665443211 11111237999999995444444 44564444444 356655543331 1 22
Q ss_pred -chhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----HHH-HHHHhhhh
Q 007128 506 -SIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVD-FVKKYLRA 575 (617)
Q Consensus 506 -~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~-~~~~~~~~ 575 (617)
.+|.-.|.++..+ .+||.|+|..++...+ +.+.+|.|+.|+|||||.+++-+... .++ -++.+++.
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve----~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVE----DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccC----CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 4555567777676 9999999999998555 88999999999999999999998876 333 34555555
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-09 Score=100.43 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=88.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCR- 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l- 288 (617)
.+|||+|||.|.+...|++. ..+|+|.++..+..|+ ..|...+.+ +.|.++|+..-.+..++||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 48999999999999999886 3889999999888877 677777776 789999988877878889998742221
Q ss_pred -cccc-----cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 289 -IDWL-----QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 289 -~h~~-----~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+-.. ..+..++..+.++|+|||+|+|+.-++. .+++.+.++..+|+..
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYL 201 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEE
Confidence 1111 1123478889999999999999753331 1456666666666443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-09 Score=113.56 Aligned_cols=120 Identities=22% Similarity=0.239 Sum_probs=86.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccc---
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCR--- 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l--- 288 (617)
+.+|||+|||+|.++..++.. .++|+|+++.++..++.+ +...++. +.+..+|+.++|+++++||+|++..-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 368999999999887665433 689999999888877644 3334443 567788999999888899999985210
Q ss_pred --c--ccc-cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 289 --I--DWL-QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 289 --~--h~~-~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
. +.. .-...++.++.|+|+|||++++..+.. .++..+++..|| ++..
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------IDLESLAEDAFR-VVKR 313 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------CCHHHHHhhcCc-chhe
Confidence 0 001 112458899999999999999876543 134567888999 6554
|
This family is found exclusively in the Archaea. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-09 Score=102.19 Aligned_cols=118 Identities=13% Similarity=0.036 Sum_probs=81.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..++.. .|+++|+++.++..++... ...++ ++.+...|.. .+++ ++||+|++....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCch-hhcC-cCCCEEEECCCc-
Confidence 368999999999998888754 5899999998877776333 33333 3555555543 3333 589999986542
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+. ...++.++.++|+|||++++..... ....++.+++++.||+.+..
T Consensus 108 ~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 GN---LTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred cC---HHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceE
Confidence 21 2346788999999999999853221 11356778889999976543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-09 Score=108.11 Aligned_cols=97 Identities=14% Similarity=0.251 Sum_probs=77.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccccc-----chhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIG-----SIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~-----~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.|||+|||-|.++..||..|. +|+.+|. +.++++|..+.+.. ....-.|++..--.+||+|.|..|+.|++
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 499999999999999999997 8889995 78888887664421 11222244332116999999999999887
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..++.+..+.+||||.++++...-
T Consensus 139 ----dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 139 ----DPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEecccc
Confidence 88999999999999999999988754
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-09 Score=116.28 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=69.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC----CcccccccccccCCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI----PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~----~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..++++ .|+++|+++.+++.++...+ ..+. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 48999999999999988765 58999999988877774433 2222 34555555432 234468999999755
Q ss_pred ccccc--c--ccceEEEEecccccCCceeeecC
Q 007128 288 RIDWL--Q--RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~--~--~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.-. . ...+++.++.++|+|||.|+++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 32211 1 11357889999999999999985
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.7e-09 Score=107.52 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=76.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++... ..++..+.+||+|+++.. .+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~------~~~~~~~~~fD~Vvani~-~~~ 191 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELN------VYLPQGDLKADVIVANIL-ANP 191 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCce------EEEccCCCCcCEEEEcCc-HHH
Confidence 368999999999888776654 38899999988877764 3333443211 112222337999997643 121
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
...++.++.++|||||+++++..... ..+.+...++..||+++.
T Consensus 192 ---~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 ---LLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEE
Confidence 23578899999999999999854321 125677788888987654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-09 Score=108.22 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=66.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDlV 282 (617)
.+|||||||+|.++..+++. .|+++|+++ +. ...++.+.++|+...+ +.+++||+|
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 58999999999999888764 489999987 21 1123567777877643 667899999
Q ss_pred ccccccccccccc-----------ceEEEEecccccCCceeeecCh
Q 007128 283 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p 317 (617)
+|+.+ .++...+ ..+|.++.++|+|||.|++..+
T Consensus 122 ~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 98754 3443221 2478999999999999999653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-08 Score=102.46 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-Ccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVL 267 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~ 267 (617)
....+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.. +.+.++ ++.+..+
T Consensus 65 ~~~~~~~~l~~------~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~ 135 (215)
T TIGR00080 65 MVAMMTELLEL------KP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVG 135 (215)
T ss_pred HHHHHHHHhCC------CC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEEC
Confidence 33455555554 33 368999999999999888764 289999999888777643 334444 4677777
Q ss_pred cccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|........+.||+|++..+. ..+...+.+.|+|||++++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAG-------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCc-------ccccHHHHHhcCcCcEEEEE
Confidence 876554445689999976542 23445688999999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-09 Score=113.56 Aligned_cols=99 Identities=16% Similarity=0.345 Sum_probs=67.9
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceE----EEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLK----LIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~----~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||.|+++.+++++ |+.|..|+.. +++.+ .+.++|+...+.-.+.++..++.+||.|.+-.+|.|+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 37999999999999999998 8865555543 34443 34566775444444456666778999999999999984
Q ss_pred hcCCCcccchhhccccccCcceEEEecC
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. -+....+.+++|+|||||.+++...
T Consensus 142 ~--~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 142 R--KNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp G--GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred h--hHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2 2678899999999999999987543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-09 Score=106.37 Aligned_cols=99 Identities=16% Similarity=0.018 Sum_probs=71.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH------------HhCCCcccccccccccCCC-CCccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL------------ERGIPAYLGVLGTKRLPYP-SRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~------------~rg~~~~~~~~d~~~lpf~-~~sFD 280 (617)
.+|||+|||.|..+..|+++ .|+|+|+|+..++.+..+... .....+.+.++|+..++.. ...||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 58999999999999999987 599999999877654321111 0123456677888777543 25899
Q ss_pred ccccccccccccccc-ceEEEEecccccCCceeee
Q 007128 281 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 281 lV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvi 314 (617)
+|+-..+++|..... ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999776655554332 4589999999999997554
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-09 Score=107.53 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=68.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. .+.+..+| ++..+++||+|++..+++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---chhccCCcCEEEEcchhhc
Confidence 368999999999999888765 489999999888877744333 333 45566655 4445688999999988767
Q ss_pred cccc-cceEEEEecccccCCceeee
Q 007128 291 WLQR-DGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 291 ~~~~-~~~~L~el~RvLrPGG~lvi 314 (617)
+..+ ...+++++.+++++++.+.+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5433 23577778787765555444
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-10 Score=101.27 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred hHHHhhhcchhhHhhhcC--CceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhc---ccCCcchhhhhhhh-h
Q 007128 461 NLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAY---STYPRTYDLLHAWT-V 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~---~~~p~tfDlvh~~~-~ 529 (617)
+|||+|||+|.++.+|++ .+. .|+.+|. +.+++.+.++- .-..++-.+.++ ...+..||+|.+.. .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 589999999999999999 677 4666663 67887777764 222222222233 33447799999988 2
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.++... .+...+|.++.+.|||||+++|.+
T Consensus 81 ~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3322111 245678999999999999999975
|
... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-09 Score=112.07 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh
Q 007128 182 GGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER 258 (617)
Q Consensus 182 gg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r 258 (617)
..+..|..|...-.+...++|.. ...++.+|||||||+|.++...+.. .|+++|+++..+..++ +.+..+
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~------~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N 207 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEK------YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELN 207 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHH------HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHT
T ss_pred CCCCcccCCCCHHHHHHHHHHHH------hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHc
Confidence 33566888877666666666654 1122369999999999776555543 5999999998887777 566667
Q ss_pred CCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHH
Q 007128 259 GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVE 338 (617)
Q Consensus 259 g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~ 338 (617)
++...+.+.. ......+.||+|+++-. .+ ....++..+.++|+|||++++|+.-... .+.+.+.++
T Consensus 208 ~~~~~~~v~~--~~~~~~~~~dlvvANI~-~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------~~~v~~a~~ 273 (295)
T PF06325_consen 208 GVEDRIEVSL--SEDLVEGKFDLVVANIL-AD---VLLELAPDIASLLKPGGYLILSGILEEQ--------EDEVIEAYK 273 (295)
T ss_dssp T-TTCEEESC--TSCTCCS-EEEEEEES--HH---HHHHHHHHCHHHEEEEEEEEEEEEEGGG--------HHHHHHHHH
T ss_pred CCCeeEEEEE--ecccccccCCEEEECCC-HH---HHHHHHHHHHHhhCCCCEEEEccccHHH--------HHHHHHHHH
Confidence 7665554322 22234589999997642 12 1234677799999999999998654421 245556666
Q ss_pred Hhhhhhhhc
Q 007128 339 RMCWRIAAK 347 (617)
Q Consensus 339 ~~gf~~v~~ 347 (617)
+ ||+++..
T Consensus 274 ~-g~~~~~~ 281 (295)
T PF06325_consen 274 Q-GFELVEE 281 (295)
T ss_dssp T-TEEEEEE
T ss_pred C-CCEEEEE
Confidence 5 8876543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-09 Score=105.76 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=99.3
Q ss_pred eeEEEeecccccccccccccch---hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
...++|||||.|.+..+|...+ ++-+|.|..|+..++ -+...++.....+.|-+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 3579999999999999998874 567788887765543 3444566677788999999999999999999887 799
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHH--------------------HHHHHHHHHHHHHHhhhhhhhccCc
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE--------------------DLRIWKEMSALVERMCWRIAAKRNQ 350 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~--------------------~~~~w~~l~~l~~~~gf~~v~~~~~ 350 (617)
.++.+..+..+...|||+|.|+-+........+- ....-+++..++.++||.......+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 9999999999999999999999764332110000 0001166788888888876655433
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-09 Score=111.10 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=71.6
Q ss_pred hhHHHhhhcchhhHhhhcC----CceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE----KDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++ .+. .|+.+|. +.|++.|.++- +...+.-.+.++..+| ..||+|.++.+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~---~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3599999999999988875 234 5777774 78888886662 2112222233344444 56999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++++... +...++.||.|+|||||.+++.|..
T Consensus 135 l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 135 LQFLEPS--ERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHhCCHH--HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9987522 4578999999999999999999854
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-09 Score=111.68 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=78.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----cccccchhhhhhhccc--CCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGLIGSIHNWCEAYST--YPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++.+|++++. .|+.+|. +.+++.+.+ .|+ .+...+.++.. .+++||+|.+..+|+++
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999999876 5666674 566554433 344 12211222222 25899999999999877
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
. ..++..++.+|.|+|||||++++-...+ ..++++++... |+.+
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~ 255 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIV 255 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEE
Confidence 4 2267789999999999999966532111 34568888876 7775
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-10 Score=108.58 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=69.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++ +.+...++. +.+...|... +.++++||+|+|+--+ +
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-H 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-B
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccch-h
Confidence 58999999999999888874 4899999998887776 344445555 6666666543 2346899999987542 2
Q ss_pred cccc-----cceEEEEecccccCCceeeecC
Q 007128 291 WLQR-----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~-----~~~~L~el~RvLrPGG~lvis~ 316 (617)
...+ ...++.+..+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2111 2458889999999999998754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-09 Score=108.18 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=69.8
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec--ccccchhhhhhhcc--cCC-cchhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR--GLIGSIHNWCEAYS--TYP-RTYDLLHAWTVF 530 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r--gl~~~~~~~~e~~~--~~p-~tfDlvh~~~~~ 530 (617)
..-.+|||+|||+|.++..+++...-.-+++.+|. +++++.+.++ +....++....++. .++ .+||+|++..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 33457999999999999999875210114666663 5666666555 11111111111211 133 899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.|+. ++..++.++.++|||||++++.+.
T Consensus 98 ~~~~----~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 98 QHLE----DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hccC----CHHHHHHHHHHHhcCCcEEEEEec
Confidence 9876 788999999999999999998764
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-09 Score=112.45 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=77.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc--CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL--PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l--pf~~~sFDlV~~s~~l 288 (617)
..+||||||+|.++..++.. .++|+|+++.++..+..+ +.+.++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 57999999999999999865 689999999888888744 444454 577778887654 578899999997654
Q ss_pred ccccccc------ceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRD------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~------~~~L~el~RvLrPGG~lvis~ 316 (617)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4554332 257999999999999999964
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-09 Score=107.64 Aligned_cols=113 Identities=20% Similarity=0.303 Sum_probs=76.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccc--cchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLI--GSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~--~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++ |+- ....+. ..+ .++.+||+|.+..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 4799999999999999999875 5677774 5676654332 331 111121 111 23578999999999987
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecCh-----------h---HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----------S---VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----------~---~~~~~~~~~~~~~w~~~ 581 (617)
+.. .+...++.++.|+|||||+++|-+.. . ..+++.+++.. |+.+
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~ 165 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELL 165 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEE
Confidence 642 25678999999999999996553211 1 34567777764 6654
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-09 Score=111.53 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=86.2
Q ss_pred ceeecCCCCccccCchhhH-HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchh
Q 007128 176 EKIIFPGGGTHFHYGADKY-IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQN 250 (617)
Q Consensus 176 ~~~~Fpgg~~~F~~~a~~Y-~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a 250 (617)
..+.|......|....-.+ .+.+.+.++. ..+ .+|||+|||.|.++..|++. .++-+|++...++.+
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~------~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPP------DLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA 198 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCc------cCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH
Confidence 4455556666676654332 2334555554 222 38999999999999999875 578888888777777
Q ss_pred hhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc----ceEEEEecccccCCceeeecChhh
Q 007128 251 QIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 251 ~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+. .+..+++.......+....+..+ +||+|+|+--++.-..-. .+++.+..+.|++||.|.|+....
T Consensus 199 r~-Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 199 RK-NLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred HH-hHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 74 34444444422222333344454 999999986533221111 258889999999999999987633
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-09 Score=110.17 Aligned_cols=126 Identities=20% Similarity=0.302 Sum_probs=86.8
Q ss_pred ceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhH
Q 007128 176 EKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 176 ~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~ 253 (617)
+..-+-|.|.||.-...++.+.+. .............++||||+|.|..+..|+.. .|++.++|+.|. .
T Consensus 60 ~iNG~LgRG~MFvfS~~Q~~~LL~----~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~ 130 (265)
T PF05219_consen 60 DINGILGRGSMFVFSEEQFRKLLR----ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----W 130 (265)
T ss_pred hHhhhhcCCcEEEecHHHHHHHhh----hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----H
Confidence 334556788888888777754443 21111112224568999999999999999875 688888887653 3
Q ss_pred HHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 254 FALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 254 ~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.-+++|.. +.+..++.-.+.+||+|.|.+++ .-...+..+|+++++.|+|+|+++++
T Consensus 131 rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 131 RLSKKGFT----VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred HHHhCCCe----EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 33456654 23334444345689999999874 45566678999999999999999985
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-08 Score=102.29 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=82.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++. .+...++. +.+..+|... ++++++||+|+|+.-.+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999888864 58999999988877763 33444443 6677777655 456789999998532111
Q ss_pred ------cccc-------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 ------WLQR-------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ------~~~~-------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+... ...++.++.++|+|||.+++.... .. -..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----~~-----~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----DQ-----GEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc----cH-----HHHHHHHHHhCCCCce
Confidence 0000 013567889999999999985311 11 1457778888888654
Q ss_pred h
Q 007128 346 A 346 (617)
Q Consensus 346 ~ 346 (617)
.
T Consensus 238 ~ 238 (251)
T TIGR03534 238 E 238 (251)
T ss_pred E
Confidence 3
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-09 Score=109.96 Aligned_cols=99 Identities=12% Similarity=0.185 Sum_probs=70.5
Q ss_pred hhHHHhhhcchhhHhhhcCC----ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK----DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|+++ +. +++.+|. ++|++.|.++ +....++-.+.++..+| ..+|+|.+..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~---~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 36999999999999988764 34 5667774 6888777654 11111111223333444 56999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++|+... +...+|.++.|+|||||.+++.|..
T Consensus 132 l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPE--DRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCeEEEEeecc
Confidence 9877422 4578999999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-08 Score=102.09 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++ +.+...++++.+...|... .+++++||+|+++.-..+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 68999999999998887764 5889999998777666 3344445566666667654 34567899999874321111
Q ss_pred cc--------------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 293 QR--------------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 293 ~~--------------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
.. ...++.++.++|||||++++...... . ..++.+.++..||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~------~~~~~~~l~~~g~~ 178 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--G------VERTLTRLSEAGLD 178 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--C------HHHHHHHHHHCCCC
Confidence 00 12356778999999999998533321 0 13344555666663
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.8e-09 Score=109.06 Aligned_cols=102 Identities=10% Similarity=0.193 Sum_probs=76.1
Q ss_pred ceeEEEeeccccccccccccc------chhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLS------SDVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~------~~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
.+++|+|||||.|.++..++. ..++++|+++.+++.|+.......++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 347899999998854433322 14899999998888887444333444 4788888877764335789999988
Q ss_pred ccccccc-cccceEEEEecccccCCceeeecC
Q 007128 286 RCRIDWL-QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 286 ~~l~h~~-~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++++|. .+...++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 777774 455679999999999999999975
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-09 Score=105.53 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEE-----EEeecCC-CCCceEEEeecc----cccc-----hhhhhhhcccCC
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWV-----MSVVPED-GPNTLKLIYDRG----LIGS-----IHNWCEAYSTYP 518 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v-----~~v~~~~-~~~~l~~~~~rg----l~~~-----~~~~~e~~~~~p 518 (617)
++.+.--+||||+||+|-+|..+.++--.. .+|+..| +++||.++.+|. +-.. +-.-.|++| ||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd 174 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD 174 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence 444555779999999999998888652221 4677777 478988877775 3222 111235667 66
Q ss_pred -cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHH-HHHHHhhhhccccc
Q 007128 519 -RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVV-DFVKKYLRALNWEA 580 (617)
Q Consensus 519 -~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~-~~~~~~~~~~~w~~ 580 (617)
++||......-.- ...+++.+|.|+.|||||||.|.+-+...+. +.|+.+.+.--.++
T Consensus 175 d~s~D~yTiafGIR----N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR----NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCcceeEEEeccee----cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999987533333 3447889999999999999999998887655 34444444433333
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-09 Score=108.33 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=87.0
Q ss_pred ChhhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchh----hHhhhcCCc----eEEEEeecCCC-CCceEEE
Q 007128 428 SSEMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGS----FAAALKEKD----VWVMSVVPEDG-PNTLKLI 498 (617)
Q Consensus 428 ~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~----fa~~L~~~~----~~v~~v~~~~~-~~~l~~~ 498 (617)
+...|-.|...|....+.....+......+.-.+|+|+|||+|- +|..|++.. .+-..|+++|. +.||+.|
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 45668888888887665543322111122233579999999994 566665531 12347888884 6888777
Q ss_pred eecccc-----------------------------------cchhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCccc
Q 007128 499 YDRGLI-----------------------------------GSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGED 542 (617)
Q Consensus 499 ~~rgl~-----------------------------------~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~ 542 (617)
.+. .. -..|+..+. .+| +.||+|+|..+|.|+... +...
T Consensus 149 r~~-~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~~--~~~~ 223 (264)
T smart00138 149 RAG-IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDEP--TQRK 223 (264)
T ss_pred HcC-CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCHH--HHHH
Confidence 542 11 011222221 133 899999999999988522 4568
Q ss_pred chhhccccccCcceEEEecChhH
Q 007128 543 LLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 543 ~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
++.++.|+|+|||++++-+....
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHhCCCeEEEEECcccC
Confidence 99999999999999999877543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-09 Score=101.23 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=79.1
Q ss_pred ccccCccchhhHHHhhhcchhhHhhhcC-CceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCC-cchhhhhhhh
Q 007128 451 SPKIQSNSLRNLMDMKAHLGSFAAALKE-KDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 451 ~~~i~~~~~r~vLD~g~G~G~fa~~L~~-~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~ 528 (617)
...|..+ .+|||+|||.|.+-++|.+ +++.+..|.- .+..+..+.+||+--...|..+.++.|| ++||.|..++
T Consensus 8 ~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 8 AEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred HHHcCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 3345554 3699999999999999987 6775444432 2456677788998656668888888898 9999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++++. +++.+|.||-|| |...|++=+.
T Consensus 84 tLQ~~~----~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 84 TLQAVR----RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHhHh----HHHHHHHHHHHh---cCeEEEEecC
Confidence 999987 788999999777 5567776554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-09 Score=103.76 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=60.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-c-CCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-L-PYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-l-pf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..+++. .++++|+++.++. .+.++++ .+..+|+.. + ++++++||+|+|+.++ |
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~-----~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l-~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL-----ACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTL-Q 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH-----HHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHh-H
Confidence 58999999999999888653 3577887765443 3334443 455566654 4 4778899999999875 4
Q ss_pred cccccceEEEEecccccC
Q 007128 291 WLQRDGILLLELDRLLRP 308 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrP 308 (617)
+..++..+++++.|++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred cCcCHHHHHHHHHHhCCe
Confidence 555667788888877664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-08 Score=99.04 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=81.0
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC---cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++... ...+.. +.+...|... ++.+++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 58999999999998888765 6889999988777665333 333332 5566666544 345568999997643222
Q ss_pred cc--------------------cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 WL--------------------QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~--------------------~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.. .....+++++.++|+|||.+++..+... . -+.+.+++.+.||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~------~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--G------EDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--C------HHHHHHHHHHCCCeee
Confidence 10 0012368899999999999988653321 1 1456778888898654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-09 Score=111.01 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=84.3
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||+|.++..+++. +. .+|+.+|. ++|++.+.++.- +..++.-.+.++.-+++||+|.+..++.++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 36999999999998888763 21 25666664 577776655421 1222222233332238999999999998766
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh-----------------HHHHHHHhhhhccccccccccc
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------VVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
+...+|.|+.|+|||||.+++.++.. ..+++.+++++.+++.+ ++.+
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V-~i~~ 256 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV-KLKR 256 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE-EEEE
Confidence 67889999999999999998865321 24678899999999986 5544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-08 Score=104.79 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=78.8
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc---cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR---LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~---lpf~~~sFDlV~~s~ 286 (617)
..+|||+|||+|.++.++++. .|+++|+++.+... +++.+.++ .++.+...|+.. +.+..++||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d-Ll~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD-LTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 468999999999999999875 39999999754432 22344333 355566667543 222345899999775
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhh---cCCHHHHHHH-HHHHHHHHHhhhhhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY---AQDEEDLRIW-KEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~---~~~~~~~~~w-~~l~~l~~~~gf~~v~ 346 (617)
. . .++...++.++.++|||||+|++...... ..+++ ..+ +++ +.+++.||+.+.
T Consensus 211 a-~--pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe--~~f~~ev-~~L~~~GF~~~e 268 (293)
T PTZ00146 211 A-Q--PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE--VVFASEV-QKLKKEGLKPKE 268 (293)
T ss_pred C-C--cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH--HHHHHHH-HHHHHcCCceEE
Confidence 3 2 22223466789999999999999522111 11122 122 334 667888897553
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-09 Score=101.74 Aligned_cols=96 Identities=20% Similarity=0.347 Sum_probs=71.2
Q ss_pred hhHHHhhhcchhhHhhhcC-C--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc----CCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE-K--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST----YPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~-~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~----~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++ . +. .++.+|. +.|++.|.++ |+- .++.-+.++.. |++.||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 3699999999999999994 2 45 4666663 6888877774 331 23322233322 33789999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.++.++. +...+|.+|.|.|+|||.+++.+..
T Consensus 81 ~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP----DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc----CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9997665 7788999999999999999999988
|
... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-09 Score=113.10 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=69.7
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|+++..+++. ++ .|+.+|. +++++.+.++.---.+.-.+.++...+++||+|++..+|.|+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~-- 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP-- 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh--
Confidence 47999999999999999875 55 5666663 67777776653100111112233334589999999999998741
Q ss_pred CCcccchhhccccccCcceEEEec
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.++..++.++.|+|||||++++.+
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 256789999999999999999865
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-08 Score=99.25 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=79.4
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++. .+...++ ++.+...|.... +..++.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 36899999999998887653 258999999988877663 3444442 456666666543 33346899998743
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
. ......++.++.++|+|||++++..... ....++...+++.||
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGF 163 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 2 1223468889999999999999854322 113566777788887
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-08 Score=99.12 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=69.2
Q ss_pred eEEEeecccccccccccccc-hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
..|-|+|||.+.++..+... .|...|+.+. +-.+..+|+..+|+++++.|++++..+++ -.+
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn 136 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTN 136 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCC
Confidence 57999999999999877643 5777776542 22356689999999999999999877654 344
Q ss_pred cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
...++.|+.|+|||||.|.|..-...... -+.+.+.++..||+....
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~------~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFEN------VKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcC------HHHHHHHHHHCCCeEEec
Confidence 46799999999999999999743332221 256777889999987653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-08 Score=96.34 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=65.8
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||+|||+|.++..|+.. .++++|+++.++..++..+.. .++ ++.+...|........++||+|++..+..+
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcCCCcCEEEEccCchh-
Confidence 368999999999988876654 588999998777666643333 233 366666665443223478999998765322
Q ss_pred ccccceEEEEecccccCCceeeecC
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+..++.+.|+|||.+++..
T Consensus 157 ------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 157 ------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ------hhHHHHHhcCCCcEEEEEE
Confidence 2345789999999999853
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-08 Score=98.86 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=93.0
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHH-HhCCCccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFAL-ERGIPAYLGV 266 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~-~rg~~~~~~~ 266 (617)
..+...+++.. ......+||+||||.|.....+++. .|.+.|+|+..+..-..+... +....+.+..
T Consensus 57 L~~Efpel~~~------~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~D 130 (264)
T KOG2361|consen 57 LLREFPELLPV------DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWD 130 (264)
T ss_pred HHHhhHHhhCc------cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccccee
Confidence 33445555554 3333348999999999988888763 488999999766544322111 1111122222
Q ss_pred cccc--ccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeecChhhhcCCHHH-----------------
Q 007128 267 LGTK--RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQDEED----------------- 326 (617)
Q Consensus 267 ~d~~--~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~~~~~----------------- 326 (617)
++.. .-|...+++|+|++.+++....++. ..++.++.++|||||.+++.+...+......
T Consensus 131 lt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDG 210 (264)
T KOG2361|consen 131 LTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDG 210 (264)
T ss_pred ccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCC
Confidence 2222 2356678999999988866554432 4599999999999999999865543221100
Q ss_pred HHHH----HHHHHHHHHhhhhhhhcc
Q 007128 327 LRIW----KEMSALVERMCWRIAAKR 348 (617)
Q Consensus 327 ~~~w----~~l~~l~~~~gf~~v~~~ 348 (617)
...| +++..++..+||..+...
T Consensus 211 T~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 211 TRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred ceeeeccHHHHHHHHHhcccchhccc
Confidence 0001 678888889998766543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-08 Score=100.53 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=67.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccchhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+..+ .++.+|. +.+++.+.++.- +-.+..-.+.++..+++||+|++..+++|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 469999999999999998764211 2455553 455444433321 1111111123332348999999999999775
Q ss_pred CCCcccchhhccccccCcceEEEecC
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++..+|.++.|+|||||++++...
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 788999999999999999999764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-08 Score=102.52 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=75.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----ccc----hhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-----IGS----IHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~----~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
++|||+|||.|-++.-|++.|. +|+.+|. +.|+++|.+.-- .+. +---|++....-..||.|.|..|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 5699999999999999999998 6777775 577777776621 120 11122333333366999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+.|+. |+..++.-+-+.|||||.++|++-.-
T Consensus 168 leHV~----dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 168 LEHVK----DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHh----CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 99998 88999999999999999999987653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-09 Score=93.53 Aligned_cols=101 Identities=26% Similarity=0.395 Sum_probs=70.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..+++. .++++|+++..+..++..... .+. ++.+.+.|..... +++++||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 58999999999988887754 588899988766666533333 232 4678888887765 778999999987543
Q ss_pred cccccc-------cceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQR-------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~-------~~~~L~el~RvLrPGG~lvis~p 317 (617)
...... ...+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 322111 12468899999999999998654
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-08 Score=99.23 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=80.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE----EEeec-ccccchhhhhhhc--ccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK----LIYDR-GLIGSIHNWCEAY--STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~----~~~~r-gl~~~~~~~~e~~--~~~p~tfDlvh~~~~~~~ 532 (617)
.|||+|||+|.++..|++.-- -..|..+|. +.|++ .+.++ ++.....+-..+. ..++.+||+|.++.....
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~ 153 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPN 153 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChh
Confidence 699999999999999988521 124666664 45554 33332 2222222222211 123467998864321110
Q ss_pred hhhcCCCcccchhhccccccCcceEEEe------cC----hhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIR------DK----QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIV 602 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~------~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 602 (617)
....+|.|+.|+|||||.++|. |. ....++..+.++..+++.+ +.++ ..+.. .....+++
T Consensus 154 ------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i-~~~~--l~p~~-~~h~~~v~ 223 (226)
T PRK04266 154 ------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL-EVVD--LEPYH-KDHAAVVA 223 (226)
T ss_pred ------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE-EEEc--CCCCc-CCeEEEEE
Confidence 1124588999999999999993 22 1223345588888889887 6665 44432 35778888
Q ss_pred Eec
Q 007128 603 QKK 605 (617)
Q Consensus 603 ~K~ 605 (617)
+|+
T Consensus 224 ~~~ 226 (226)
T PRK04266 224 RKK 226 (226)
T ss_pred EcC
Confidence 774
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-08 Score=95.86 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=74.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc---ccchhh---hhhhcccC-Ccchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL---IGSIHN---WCEAYSTY-PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~---~~e~~~~~-p~tfDlvh~~~~~~~~ 533 (617)
.|||+|||+|.++..++++..-...|+.+|...|... .++ .+.+.+ ..+-...+ +.+||+|.++......
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccC
Confidence 6999999999999988876321124555554323221 121 111111 00000112 2789999986543211
Q ss_pred hh-------cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhc--ccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 534 EK-------RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRAL--NWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 534 ~~-------~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.. .-...+.+|.|+.|+|||||.|++..... +.+.+++..+ +|+.+....+ ...-+...|.+++|+.
T Consensus 131 g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp--~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 131 GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKP--DSSRARSREVYIVATG 206 (209)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECC--ccccccCceeEEEeec
Confidence 00 00012579999999999999999965432 1233334443 5555422223 2223456788888864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-08 Score=97.14 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=80.7
Q ss_pred eeEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
...|-|+|||.+.++..- ...|+.+|+.+ ++-.+..+|+.++|+++++.|++++..++ +..+
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 357899999999888622 23577777754 23345678999999999999999876554 3455
Q ss_pred cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 295 DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 295 ~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
...++.|++|+|+|||.|+|..-.....+- ..+.+.+..+||.+....
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv------~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDV------KGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccH------HHHHHHHHHcCCeeeehh
Confidence 567999999999999999997433322221 347788899999876544
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-08 Score=98.19 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=64.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..+++....-..++.+|. +.+++.+.++.- +-.++.-....+.-+.+||+|++..++.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 357999999999999999875321013444453 344444433321 111111111222113789999998888755
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. ++..++.++.++|||||++++.+.
T Consensus 120 ~----~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 120 T----DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred c----cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 778999999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-08 Score=102.11 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=65.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceE--EEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCC-cchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVW--VMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~--v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||+|.++..|++..-- ..+|+.+|. +++++.|.++.- +.....-.+.++ ++ ++||+|.+. |.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp-~~~~sfD~I~~~--~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-FADQSLDAIIRI--YA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-CcCCceeEEEEe--cC---
Confidence 46999999999999998764111 125677774 688887766632 111111112233 33 899999862 22
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh-HHHHHHHh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKY 572 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~ 572 (617)
...+.|+.|+|||||+|++..+.. .+.+++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 235789999999999999987654 33344443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-08 Score=98.67 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=73.6
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccC-C-cchhhhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTY-P-RTYDLLHAWTV 529 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~-p-~tfDlvh~~~~ 529 (617)
+....++++||+|||.|.|++.|+.+- -.++.+|. +..++.|.+|-- .+.+.-...+++.+ | .+|||||++-|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 567899999999999999999999973 35666664 567777777632 12222122333433 4 99999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+-++. +.-++..++..|...|+|||.+|+.+..+
T Consensus 116 lYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 116 LYYLD-DAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 99885 22245678999999999999999988765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-08 Score=101.38 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=83.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c 538 (617)
.+|||+|||+|.++.++++.+.. .|+.+|. +.+++.|.++.-...+.+. ..+..-..+||+|+|+.....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~~fD~Vvani~~~~------ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDLKADVIVANILANP------ 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCCCcCEEEEcCcHHH------
Confidence 46999999999999988877652 3667774 5677666554211111010 011110127999998755442
Q ss_pred CcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 539 SGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 539 ~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+..++.++.|+|||||++++++... ..+++...+...+|+.+ ++.. .+.-..++++|
T Consensus 192 -~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~-~~~~-------~~~W~~~~~~~ 249 (250)
T PRK00517 192 -LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD-EVLE-------RGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE-EEEE-------eCCEEEEEEEe
Confidence 3467889999999999999997654 55678888888999885 3332 23455666665
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-08 Score=104.39 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=76.8
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc-----ccchhhhhhhcccCC-cchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL-----IGSIHNWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl-----~~~~~~~~e~~~~~p-~tfDlvh~ 526 (617)
.+|||+|||+|.++..|+++ .. .|+.+|. +.+++.+.+. +. +..+.+ ..+...+ .+||+|.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~---~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCCEEEEEE
Confidence 47999999999999999876 23 4556664 3555554432 11 111111 1123333 68999999
Q ss_pred hhhhhhhhh-cCCCcccchhhccccccCcceEEEecC--hhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 527 WTVFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDK--QSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 527 ~~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
+--|+.... ..-....++.+..|+|||||.++|-.. ......+++++. .+ +++. +..+-+|+-++
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~--~~va------~~~kf~vl~a~ 372 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NC--TTIA------TNNKFVVLKAV 372 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----Cc--eEEc------cCCCEEEEEEE
Confidence 877653210 000124688999999999999988742 234445555332 22 3332 24567888888
Q ss_pred e
Q 007128 604 K 604 (617)
Q Consensus 604 K 604 (617)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 8
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-08 Score=100.37 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=68.0
Q ss_pred cchhhHHHhhhcchhhHhhhcCC----ceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK----DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+-.+|||+|||+|.++..|++. +. ..+|+.+|. ++|++.+.++.. +.....-.+.++.-+++||+|.|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 34457999999999999888742 21 126788884 788887776632 1111111233333348999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|+|+... ++..+|.||.|++| |.++|.|
T Consensus 138 ~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 138 FLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 99988632 35679999999999 5555555
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-08 Score=104.71 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=80.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC-CCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP-SRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are-Na~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK-NAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 48999999999998877643 58999999999888874 4444566777888887544332 458999998642111
Q ss_pred ccc--------------------c----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 WLQ--------------------R----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~~--------------------~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
-.+ + ...++.++.+.|+|||++++.... .+ -+.+.++++..||..+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----~Q-----~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----DQ-----GAAVRGVLAENGFSGV 401 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----cH-----HHHHHHHHHHCCCcEE
Confidence 000 0 013455566789999998874311 11 1467788888888543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-08 Score=95.41 Aligned_cols=129 Identities=14% Similarity=0.230 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----ccc--ccchhh
Q 007128 437 ESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGL--IGSIHN 509 (617)
Q Consensus 437 ~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl--~~~~~~ 509 (617)
+.|++.+-+-...+.. +. -.+|||+|||+|.++..|+...- ...|+.+|. ++|++.+.+ .|+ +-.++.
T Consensus 25 ~~~~~~~~d~i~~~~~-~~---~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEY-LD---GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHh-cC---CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 4566655432222221 32 24799999999998888764321 024666664 455544332 233 222221
Q ss_pred hhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccc
Q 007128 510 WCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 510 ~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~ 579 (617)
-.+.+. .+++||+|.+.. +. ++.+++.++.|+|||||.+++.+......++..+.++++-.
T Consensus 100 d~~~~~-~~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~ 160 (181)
T TIGR00138 100 RAEDFQ-HEEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVL 160 (181)
T ss_pred chhhcc-ccCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhc
Confidence 122222 248999999866 33 45678899999999999999999988888888888875433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-08 Score=84.66 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=68.7
Q ss_pred EEEeeccccccccccccc---chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCC-CCCccccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLS---SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY-PSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~---~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~~ 292 (617)
+|||+|||+|.++..+++ ..++++|+++..+..++............+...|...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 489999999998888876 2588888887655544421111112235555666655543 457899999988744324
Q ss_pred cccceEEEEecccccCCceeeec
Q 007128 293 QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis 315 (617)
.....++..+.+.|+|||+++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 44467899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-07 Score=92.99 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=78.1
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcc--ccccccccc--CC------CCCccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAY--LGVLGTKRL--PY------PSRSFELA 282 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~--~~~~d~~~l--pf------~~~sFDlV 282 (617)
+|||||||||..+.+++++ ...-.|+.+..... ......+.+.+.. =...|+..- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~s-I~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPS-IRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhh-HHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999888888765 23333444422111 1112223332210 112333322 22 34689999
Q ss_pred ccccccccccccc--ceEEEEecccccCCceeeecChhhhc--CCHHHHHH----------------HHHHHHHHHHhhh
Q 007128 283 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFAYSSPEAYA--QDEEDLRI----------------WKEMSALVERMCW 342 (617)
Q Consensus 283 ~~s~~l~h~~~~~--~~~L~el~RvLrPGG~lvis~p~~~~--~~~~~~~~----------------w~~l~~l~~~~gf 342 (617)
+|.++ +|+..-. +.+++.+.++|+|||.|++-+|.... ...++... .+++.+++.+.|+
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99997 5654432 45999999999999999997654421 11111111 2789999999999
Q ss_pred hhhhcc
Q 007128 343 RIAAKR 348 (617)
Q Consensus 343 ~~v~~~ 348 (617)
+.....
T Consensus 186 ~l~~~~ 191 (204)
T PF06080_consen 186 ELEEDI 191 (204)
T ss_pred ccCccc
Confidence 876544
|
The function of this family is unknown. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-08 Score=102.86 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=68.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHH-hCCCcccccccccc-cCCCCCc---cc-cccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVLGTKR-LPYPSRS---FE-LAHC 284 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~d~~~-lpf~~~s---FD-lV~~ 284 (617)
.+|||+|||+|..+..|+++ .++++|+|+.|++.++.+.... .++++...++|..+ ++++... .+ ++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 57999999999988888754 5899999999988887554433 23556666778765 4444332 23 3333
Q ss_pred cccccccccc--cceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDWLQR--DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis~ 316 (617)
..+ +++..+ ...+|++++++|+|||.|++..
T Consensus 145 gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 333 333332 2458999999999999999864
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-08 Score=94.09 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=96.8
Q ss_pred HhhccccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc-----ccchhhhhhhcccCCcc
Q 007128 448 NLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL-----IGSIHNWCEAYSTYPRT 520 (617)
Q Consensus 448 ~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~~~~~~e~~~~~p~t 520 (617)
+++. .|.....++|.|+|||+|.-++.|+++ +.- -|+.+|+ ++||..|.+|+. .|++++|+-. +.
T Consensus 21 dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 3444 366788999999999999999999987 321 4788886 799999988876 5889999832 78
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~~~~w~~ 580 (617)
+|||.++.+|+-++ |-..+|.-+---|.|||++.+.-+-. ...-|.+.++..-|..
T Consensus 93 ~dllfaNAvlqWlp----dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~ 152 (257)
T COG4106 93 TDLLFANAVLQWLP----DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQ 152 (257)
T ss_pred cchhhhhhhhhhcc----ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhh
Confidence 99999999999777 44667777777899999999987754 3335888888888887
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-09 Score=93.05 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=63.0
Q ss_pred HHHhhhcchhhHhhhcCCc--eEEEEeecCCC-CCceEEEeecccc-c-chhhhhhhcccC---Ccchhhhhh-hhhhhh
Q 007128 462 LMDMKAHLGSFAAALKEKD--VWVMSVVPEDG-PNTLKLIYDRGLI-G-SIHNWCEAYSTY---PRTYDLLHA-WTVFSD 532 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~--~~v~~v~~~~~-~~~l~~~~~rgl~-~-~~~~~~e~~~~~---p~tfDlvh~-~~~~~~ 532 (617)
|||+|||+|..+..|++.- ..-..+..+|. ++|++.+.++.-. + .++..+.++..+ .++||+|.| ..+|.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998752 00136778884 7898888777620 0 112222222222 279999999 455888
Q ss_pred hhhcCCCcccchhhccccccCcc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTG 555 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG 555 (617)
+..+ +.+.++.+|.++|||||
T Consensus 81 ~~~~--~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPE--ELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHH--HHHHHHHHHHHTEEEEE
T ss_pred CCHH--HHHHHHHHHHHHhCCCC
Confidence 7644 67899999999999998
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-08 Score=100.60 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|... ++++++||+|+|+--.+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 58999999999999888864 5899999998888877 34455554 36677777643 34556899999862100
Q ss_pred ------------cccc------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 290 ------------DWLQ------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 290 ------------h~~~------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
++.+ ....++.++.++|+|||++++.... . ++.+.+++...||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~------~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----S------MEALEEAYPDVPFT 268 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----C------HHHHHHHHHhCCCc
Confidence 0000 0123577888999999999986432 1 13456666666653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-08 Score=100.15 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=76.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC--CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhhhc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG--PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~--~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~~~ 536 (617)
++||+|||.|.-|.+|+++|..|..+...+. ....++|.++++- ++.++.++.++ +..||+|.+..||.++..
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~- 109 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQR- 109 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-G-
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCCH-
Confidence 6999999999999999999994433333221 2344555566762 44444454443 489999999999998863
Q ss_pred CCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
..+..++..|..-|+|||+++|-..++ .-++++.+.. .|+.+
T Consensus 110 -~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il 165 (192)
T PF03848_consen 110 -ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEIL 165 (192)
T ss_dssp -GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEE
T ss_pred -HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEE
Confidence 366789999999999999998843222 2235666666 58875
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-08 Score=104.85 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc----c--ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG----L--IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg----l--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
+|||+|||+|..+..++.. +. -..|+.+|. +.|++.|.++. + +-.++.--+.++ ++ ++||+|+++.++.
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCVIN 157 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCccc
Confidence 7999999999876555442 11 114666664 67777766542 2 111111112233 33 7999999999888
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.. +...++.|+.|+|||||+|++.+.
T Consensus 158 ~~~----d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP----DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 678899999999999999999753
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-07 Score=96.76 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=70.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH-----hCCCcccccccccc-cCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE-----RGIPAYLGVLGTKR-LPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~-----rg~~~~~~~~d~~~-lpf~~~sFDlV~~ 284 (617)
+++||+||||.|.++..++++ .|+++|+++.++..++..+... ...++.+...|+.. +...+++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 468999999999999988765 4889999998887776433321 12346667777654 2334678999997
Q ss_pred ccccccccccc----ceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDWLQRD----GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~ 316 (617)
... .++.... ..+++.+.+.|+|||.+++..
T Consensus 157 D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 532 2221111 346788999999999999854
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-08 Score=97.12 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=77.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhccc-C-Ccchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYST-Y-PRTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~-~-p~tfDlvh~~~ 528 (617)
-.+|||+|||+|.++..|++..-. .+|+.+|. +.+++.+.++ ++ +-.++ +..+.++. + +.+||+|.++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 357999999999999999875210 15666663 5666655432 22 11122 22133332 4 38999998743
Q ss_pred hhhhhh----hcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhccccc
Q 007128 529 VFSDIE----KRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~w~~ 580 (617)
..+... ..+.....+|.++.|+|||||.|+|. +......++.+.+..-+|++
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 322110 11123567899999999999999886 45556777888888888877
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.34 E-value=4e-08 Score=95.28 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=78.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..++..+. .|+.+|. +.+++.+.++ ++ +-.++ ++.+ ..+.+||+|.++..+.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 3599999999999999998765 5666663 5666555443 22 11111 2222 12479999998766643
Q ss_pred hhhc-----------------CCCcccchhhccccccCcceEEEecChhH-HHHHHHhhhhccccc
Q 007128 533 IEKR-----------------GCSGEDLLLEMDRILRPTGFVIIRDKQSV-VDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~~-----------------~c~~~~~l~Em~RiLrPgG~~ii~~~~~~-~~~~~~~~~~~~w~~ 580 (617)
.... ...++.+|.++.|+|||||.+++.+.... ..++.+.++..+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY 160 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence 3210 11145689999999999999999876654 677888888889987
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.2e-08 Score=93.84 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=84.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec---------ccccchhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR---------GLIGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r---------gl~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
.+|||+|||.|.++..|++++. +|..+|. +++++.+.++ ++.-..+++.+.+.. .+||+|.++..
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence 4699999999999999998865 5666664 5666555222 122223344443322 58999976543
Q ss_pred hhhh-----------------hhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccccccccCCCCC
Q 007128 530 FSDI-----------------EKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 530 ~~~~-----------------~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
+... ......+..++.++.|+|||||.+++-.+. ...+++.+++...+|+.. .+. ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~---~~~ 175 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE-VVA---EEK 175 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee-eee---ecc
Confidence 3210 000112456899999999999998776543 246779999999999873 222 122
Q ss_pred CCCCCeEEEEEEe
Q 007128 592 DKDGDEVVFIVQK 604 (617)
Q Consensus 592 ~~~~~~~~l~~~K 604 (617)
...+.-.++..+|
T Consensus 176 ~~~~~~~~~~~~~ 188 (188)
T PRK14968 176 FPFEELIVLELVK 188 (188)
T ss_pred cCCceEEEEEEeC
Confidence 2344444555544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.7e-08 Score=99.40 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=98.5
Q ss_pred chhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEeeccccc---chhhh---hhhcccCCcchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIYDRGLIG---SIHNW---CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~~rgl~~---~~~~~---~e~~~~~p~tfDlvh~~~~~ 530 (617)
.=|.|||||||.|-+.-.|+.+|. .|..|.|... -.+++-.-+-++| .+|.. -|.++. .++||+|.|-+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 445799999999999999999877 5666666542 1111111111121 11111 144444 5999999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEec-----Chh-------------------HHHHHHHhhhhccccccccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRD-----KQS-------------------VVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-----~~~-------------------~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
=|.. ++.+.|.++...|||||-+|+-. ... ...-++..+++.+++.+ +++|
T Consensus 193 YHrr----~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v-~~v~ 267 (315)
T PF08003_consen 193 YHRR----SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV-RCVD 267 (315)
T ss_pred hccC----CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE-EEec
Confidence 8766 88999999999999999998533 222 46679999999999988 7776
Q ss_pred CCCCCCCCCCeEEEEEEecccccCCCCCC
Q 007128 587 ASSDSDKDGDEVVFIVQKKIWLTSESLRD 615 (617)
Q Consensus 587 ~~~~~~~~~~~~~l~~~K~~w~~~~~~~~ 615 (617)
. .. ...+|. ||+=|-..+|+.+
T Consensus 268 ~--~~-Tt~~EQ----R~T~Wm~~~SL~d 289 (315)
T PF08003_consen 268 V--SP-TTIEEQ----RKTDWMDFQSLED 289 (315)
T ss_pred C--cc-CCHHHh----ccCCCcCcccHHH
Confidence 2 21 122332 6788887777654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-07 Score=102.85 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--CCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--YPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--f~~~sFDlV~~---- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+...++.+.+..+|+..++ +++++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 368999999999998888764 5899999998888776 444555666677778877654 34578999984
Q ss_pred ccc-cc------ccccc----------cceEEEEecccccCCceeeecChhhh
Q 007128 285 SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 285 s~~-l~------h~~~~----------~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
+.. .+ .|... ...+|.++.++|||||++++++-...
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 321 11 11111 12478899999999999999865443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-07 Score=98.14 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++. .+...+. ++.+..+|....+...++||+|++.....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence 68999999999999888753 38899999988777763 3333444 36667777766655557899999875432
Q ss_pred ccccccceEEEEecccccCCceeeec
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+. ...+.+.|+|||.+++.
T Consensus 161 ~i-------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 161 EV-------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred Hh-------HHHHHHhcCCCCEEEEE
Confidence 22 12367899999998884
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-07 Score=93.85 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc-cCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR-LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~-lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|.++..++. ..|+++|+++.++..++.+ +.+.++ ++.+..+|+.. ++.....+|.++..
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~--- 116 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE--- 116 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE---
Confidence 36899999999999888764 2599999999888777643 333443 45666666543 22222345665432
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
...+...++.++.++|+|||++++..+
T Consensus 117 --~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 --GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred --CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 112224689999999999999999754
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-08 Score=102.49 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=75.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccC-Ccchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTY-PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~-p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++.++++.+. ..|..+|. +.+++.+.++. +-..+.....+.... +..||+|+|+.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 4799999999999988887764 25667774 56666665542 111111111112222 379999999766553
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~ 581 (617)
+..++.++.|+|||||+++++.... ..+++.+.+++. |+.+
T Consensus 238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 3468999999999999999987643 445667766665 7764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-08 Score=94.88 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=76.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~~~~~~~ 532 (617)
-.+|||+|||+|.++..++++.- -.+|+.+|. +.+++.+.++ ++ ..+.-.+.+. ..++..||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~~- 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSGG- 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCcc-
Confidence 34799999999999999886521 124666664 4566555432 22 1111111111 12357899999865443
Q ss_pred hhhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~~ 581 (617)
.+..++.++.|+|+|||++++.. .....+++.+++++.+|+.+
T Consensus 109 ------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 ------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 35568899999999999999976 45567788899999998764
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.5e-08 Score=93.45 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDl 281 (617)
+.+|||+|||+|.++..++.. .|+++|+++.+ ...++.+..+|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 368999999999988877653 38999998843 1123445555655432 45678999
Q ss_pred cccccccc---cccc-------ccceEEEEecccccCCceeeecC
Q 007128 282 AHCSRCRI---DWLQ-------RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 282 V~~s~~l~---h~~~-------~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|++..+.. +|.. ....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99854310 1111 11358899999999999999964
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-07 Score=91.03 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=70.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc---ccchhhhh---hhcccCC-cchhhhhhhhh---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL---IGSIHNWC---EAYSTYP-RTYDLLHAWTV--- 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~~~---e~~~~~p-~tfDlvh~~~~--- 529 (617)
.+|||+|||+|+++..++++..-...|..+|...+.. ..++ .+...++. +....++ ++||+|.++..
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 3699999999999988876421111355555422221 1122 11221111 0011233 78999997543
Q ss_pred -----hhhhhhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 530 -----FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 530 -----~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
+.|.. ..++.+.+|.++.|+|||||.+++.. ....++++-..++..=|.. ....| .-......|++++|.
T Consensus 111 ~g~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 111 SGYWDIDHLR-SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKV-KVTKP--QASRKRSAEVYIVAK 186 (188)
T ss_pred CCCccccHHH-HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceE-EEeCC--CCCCcccceEEEEEe
Confidence 11111 11234689999999999999999943 2222222222221111222 11222 223345678898885
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.9e-08 Score=100.00 Aligned_cols=97 Identities=22% Similarity=0.391 Sum_probs=73.5
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEE----EeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKL----IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~----~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
..|||+|||-|+++.+++++ +|.|..|+-. +++... +.++|+-..++-.-++..+++..||-|.+-.+|.|+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg 151 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVG 151 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhC
Confidence 36999999999999999987 8955444443 344444 4556886455544455555666799999999999986
Q ss_pred hcCCCcccchhhccccccCcceEEEe
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.. +..+.+.-++++|+|||.+++-
T Consensus 152 ~~--~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 152 KE--NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cc--cHHHHHHHHHhhcCCCceEEEE
Confidence 33 6789999999999999998654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-07 Score=92.19 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=76.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..++.. .++++|+++.++..++.........++.+..+|... ++++++||+|+++.-.+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 358999999999988888754 588999998877766643331122346666666533 234578999998532110
Q ss_pred c------cc-------------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 291 W------LQ-------------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 291 ~------~~-------------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
. .. ....++.++.++|+|||++++... + .. -+.+.+++...||..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~-~~-----~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y-DQ-----GEAVRALLAAAGFAD 257 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c-hH-----HHHHHHHHHhCCCce
Confidence 0 00 001245566699999999998431 1 11 145677777888853
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-07 Score=102.37 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=72.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCccc--ccccccccCC--CCCccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYL--GVLGTKRLPY--PSRSFELAHC-- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~--~~~d~~~lpf--~~~sFDlV~~-- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+.+.+ ..+|....++ ++++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 368999999999888777653 58999999988877763 44445655333 4455554443 4678999984
Q ss_pred --c-ccccccccc----------------cceEEEEecccccCCceeeecChhhhc
Q 007128 285 --S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYA 321 (617)
Q Consensus 285 --s-~~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~ 321 (617)
+ ...++..++ ...+|.++.++|||||++++++-...+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 222221111 135888999999999999998765543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.1e-08 Score=96.52 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=82.4
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccc----cchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLI----GSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~----~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..|++.+. .|+.+|. ++|+..|.++.-. ..+...+.++...+++||+|.+..++.|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 45799999999999999998766 5667774 6888777766321 11222223444445899999998888776
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh------------------------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------~~~~~~~~~~~~~w~~~ 581 (617)
.. .++..++.++.|+++|++++.+..... ..+++.++++..+|+.+
T Consensus 133 ~~--~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 133 PA--SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred CH--HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 32 256789999999999888887754322 23456677777777764
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.1e-08 Score=97.32 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccC--CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lp--f~~~sFDlV~~s~~ 287 (617)
..+|||+|||+|.++..++++ .+++|++.+.+...|+...+... .-.+.+.+.|+..+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 468999999999999999876 58899998887777775444422 123667777877654 33447999999732
Q ss_pred cccc-----------------ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDW-----------------LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~-----------------~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.+.- ..+.+.+++-..++|||||++.+..++. ...++..++.+.+|+.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~ 189 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEP 189 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCc
Confidence 1110 1112346667788999999999986543 2356778888887754
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-07 Score=95.42 Aligned_cols=102 Identities=17% Similarity=0.024 Sum_probs=77.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHH------------HHHhCCCcccccccccccCCC---CCc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQF------------ALERGIPAYLGVLGTKRLPYP---SRS 278 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~------------a~~rg~~~~~~~~d~~~lpf~---~~s 278 (617)
.+||+.|||.|.-+.+|+++ .|+|+|+|+..+..+..+. ...++..+.+.++|+..++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 58999999999999999987 4999999998776653211 112356788889999888742 268
Q ss_pred ccccccccccccccccc-ceEEEEecccccCCceeeecCh
Q 007128 279 FELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 279 FDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
||+|+-..+++++.++. .++.+.+.++|+|||.+++...
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 99988665655554432 4599999999999999888643
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.5e-08 Score=109.99 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeecc----c-ccchhhhhhhccc-CC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRG----L-IGSIHNWCEAYST-YP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rg----l-~~~~~~~~e~~~~-~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.|++.+.++. . +-.++.-+..++. ++ ++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~---kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDK---RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46999999999999888764 33 6777774 57777766542 1 1111111233442 33 89999998887
Q ss_pred hhhhhh---------cCCCcccchhhccccccCcceEEEecC
Q 007128 530 FSDIEK---------RGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 530 ~~~~~~---------~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++++.. ...++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 775421 112567899999999999999999985
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-07 Score=91.71 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=63.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.++..++........++.+|. +++++.+.++ ++ +-.++.-.+.++.-+.+||+|++..++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 46999999999999998875410114555553 3444444333 12 1111111112221137999999988887
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.. ++..+|.++.++|+|||.+++.+
T Consensus 133 ~~~----~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 133 NVP----DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cCC----CHHHHHHHHHHhccCCcEEEEEE
Confidence 554 78899999999999999998864
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-07 Score=92.07 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=71.3
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~ 266 (617)
+.....+.+.|.. .++ .+|||||||+|.+++.|+.. .|+++|+.+.....|+...+.....++.+..
T Consensus 58 P~~~a~~l~~L~l------~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDL------KPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-------TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhc------CCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4455666677765 444 79999999999999888763 3789999886666666444433333577777
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+|...---....||.|++..+.. ..-..+.+.|++||++++-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~-------~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVP-------EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBS-------S--HHHHHTEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeeccc-------hHHHHHHHhcCCCcEEEEE
Confidence 77654333456899999876532 1224477889999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-07 Score=101.11 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=82.1
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC----CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP----YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp----f~~~sFDlV~~ 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+ ++.+..+|+..++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE-NAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH-HHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 368999999999998888753 48999999988877764 4444555 4677778887765 44678999985
Q ss_pred c----c-cccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 285 S----R-CRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 285 s----~-~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
. . ..++..++ ...+|.++.++|||||++++++-..++...+ ..+..++++.
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene-----~~v~~~l~~~ 403 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE-----AQIEQFLARH 403 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHH-----HHHHHHHHhC
Confidence 2 1 11111111 1357899999999999999886555433322 3455555543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-07 Score=96.16 Aligned_cols=95 Identities=13% Similarity=0.284 Sum_probs=67.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh--hhhhhcc-cCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH--NWCEAYS-TYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~--~~~e~~~-~~p~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.++..|++.+. +++.+|. ++++..+.++ ++...++ +. +.++ ..+.+||+|++..++.
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTA-EELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH-HHhhhhcCCCccEEEEhhHhh
Confidence 3599999999999999998765 4666663 4555554443 2211111 22 2222 1238999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|.. +...+|.++.++|+|||.+++...
T Consensus 126 ~~~----~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVP----DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccC----CHHHHHHHHHHHcCCCcEEEEEec
Confidence 775 678899999999999999999764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-07 Score=97.43 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=68.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++. .+...++. +.+..+|... ++++++||+|+++--.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999998888753 59999999988887774 44444443 6677777644 34545899999862110
Q ss_pred ------------cccc------------ccceEEEEecccccCCceeeecC
Q 007128 290 ------------DWLQ------------RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 ------------h~~~------------~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.+ ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1100 11235677888999999999854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-07 Score=104.14 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=80.3
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~---- 284 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+.+.|+. +.+...|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 368999999999887776642 5999999999888776 444555653 677778877765 5578999984
Q ss_pred cc-ccc------cccc----------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 285 SR-CRI------DWLQ----------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 285 s~-~l~------h~~~----------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
+. ..+ .|.. ....+|.++.++|||||++++++-...+...+ ..+..+++.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene-----~~v~~~l~~ 395 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE-----LQIEAFLQR 395 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH-----HHHHHHHHh
Confidence 21 111 1111 11247999999999999999987655443322 334555554
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-07 Score=95.27 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=80.9
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-C----CceEEEeec-ccccchhhhhhhc--ccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-P----NTLKLIYDR-GLIGSIHNWCEAY--STYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~----~~l~~~~~r-gl~~~~~~~~e~~--~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|+++..|++.-..-..|..+|. + ++++.+.+| +++..+.|...+. .....+||+|.++....+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence 6999999999999999986210012444443 2 366666554 4544444543221 112268999987654221
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
+...++.|+.|+|||||+|+|.-... +-+++ +.++..+++.+ ++++ .++. +.+..+++
T Consensus 215 ------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~-e~v~--L~Py-~~~h~~v~ 283 (293)
T PTZ00146 215 ------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPK-EQLT--LEPF-ERDHAVVI 283 (293)
T ss_pred ------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceE-EEEe--cCCc-cCCcEEEE
Confidence 22346679999999999999942211 12234 66777788876 5665 5554 23344555
Q ss_pred EEec
Q 007128 602 VQKK 605 (617)
Q Consensus 602 ~~K~ 605 (617)
++++
T Consensus 284 ~~~~ 287 (293)
T PTZ00146 284 GVYR 287 (293)
T ss_pred EEEc
Confidence 5553
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-07 Score=95.99 Aligned_cols=105 Identities=20% Similarity=0.354 Sum_probs=75.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhC------CCcccccccc------cccCCCCCcc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERG------IPAYLGVLGT------KRLPYPSRSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg------~~~~~~~~d~------~~lpf~~~sF 279 (617)
+..+||+|||-|.-+.....+ .++++||+...+.+++.+.-.-++ .++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 467999999999765555444 578999998888877755432211 2356666663 3456677679
Q ss_pred ccccccccccccc-ccc---ceEEEEecccccCCceeeecChhhh
Q 007128 280 ELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 280 DlV~~s~~l~h~~-~~~---~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
|+|-|-+|+ |+. ... ..+|.++.+.|||||+|+-+.|...
T Consensus 198 DivScQF~~-HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 198 DIVSCQFAF-HYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred ceeeeeeeE-eeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 999998884 542 221 3499999999999999999988764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-07 Score=97.96 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=69.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 57999999999999888764 5999999998888877 34444454 36677777643 23456899999862110
Q ss_pred ------------ccccc------------cceEEEEecccccCCceeeecC
Q 007128 290 ------------DWLQR------------DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 ------------h~~~~------------~~~~L~el~RvLrPGG~lvis~ 316 (617)
++.+. ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 00000 0235678889999999999853
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.2e-07 Score=90.73 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=75.5
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCC-CCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPY-PSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf-~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++.+ +...+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 47999999999998887653 589999999888777633 33333 3456666543 221 135799999863211
Q ss_pred cc-----cc----------------c----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DW-----LQ----------------R----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~-----~~----------------~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.. .+ + ...++..+.++|+|||++++..... . -.++..+++..||+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~-----~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----Q-----APLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----h-----HHHHHHHHHHCCCCc
Confidence 10 00 0 0135566779999999999864321 1 245777778888753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-07 Score=91.19 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=66.5
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc-CCcchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST-YPRTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~-~p~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..+++.+.. ++.+|. +.++..+.++ ++ +.....-.+.++. .+.+||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 346999999999999999877653 555553 4454444332 11 1111111122221 24899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.|.. ++..+|.++.++|+|||.+++...
T Consensus 123 ~~~~----~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP----DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC----CHHHHHHHHHHhcCCCcEEEEEec
Confidence 8776 778999999999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-07 Score=94.38 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred hhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchh-hhhhhcccCC-cchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIH-NWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
...|||+|||+|.++..|++. +. +++.+|. +++++.|.++.- +..++ +..+ .++ ++||+|.+..++.|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~---~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFD---PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccC---CCCCCCEEEEEECChhhh
Confidence 346999999999999999875 34 5777774 678887766421 11111 2222 233 89999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. .-++..++.||.|++ +++++|.+-
T Consensus 118 l~--p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 IN--PDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CC--HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 84 226789999999998 578888764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-07 Score=100.78 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=68.7
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH------hC----CCcccccccccc------cCC
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE------RG----IPAYLGVLGTKR------LPY 274 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~------rg----~~~~~~~~d~~~------lpf 274 (617)
+..+|||+|||-|.-+...... .++|+|++...+.+|+.+...- +. ..+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4579999999988655444443 5889999999888887665221 11 234445555432 222
Q ss_pred CCCcccccccccccccccccc---ceEEEEecccccCCceeeecChhh
Q 007128 275 PSRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
....||+|.|-+++|+..... ..+|..+...|+|||+|+.+.|..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999998855544443 249999999999999999998766
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-07 Score=92.30 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=70.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh----hhhhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH----NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~----~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
..|||+|||+|.++..++..-.....|+.+|. +.+++.+.++ |+...+. +..+.++.++..||+|.+...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 36999999999999887653111124666664 5666654433 3211111 221222233468999886331
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~w~~ 580 (617)
..++..++.++.|+|||||.+++. -+.+.+.++...++.++++.
T Consensus 121 ------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 121 ------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred ------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 125677999999999999999883 23445667777777777643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.13 E-value=6e-07 Score=86.32 Aligned_cols=95 Identities=16% Similarity=0.034 Sum_probs=65.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..++++ .++++|+++.++..++..... ..++.+..+|+..+++++.+||.|+++.- ++...
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~~~ 91 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNIST 91 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCC-cccHH
Confidence 58999999999999999876 589999998776665533321 23567788899999888778999987632 33322
Q ss_pred c-cceEEEEecccccCCceeeec
Q 007128 294 R-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 294 ~-~~~~L~el~RvLrPGG~lvis 315 (617)
. ...++.+. .+.++|.+++.
T Consensus 92 ~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 92 PILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred HHHHHHHhcC--CCcceEEEEEE
Confidence 1 12233322 24588888874
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-07 Score=92.54 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=61.1
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~ 537 (617)
+|||+|||+|.++..|++. +. ++..+|. ++++..+.++++--...+..+.++.++ ++||+|.++.+|+|+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 6999999999999999764 33 3445553 566666656664211122222233344 8999999999999887
Q ss_pred CCcccchhhccccccCc
Q 007128 538 CSGEDLLLEMDRILRPT 554 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPg 554 (617)
++..+|.||.|+++++
T Consensus 90 -d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 -NPEEILDEMLRVGRHA 105 (194)
T ss_pred -CHHHHHHHHHHhCCeE
Confidence 7889999998888764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-06 Score=85.86 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTK 270 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~ 270 (617)
....+.+.|.. .. +.+|||||||+|..++-|++. .|++++..+.-...|+.++.. .|. ++.+.++|..
T Consensus 60 ~vA~m~~~L~~------~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-lg~~nV~v~~gDG~ 130 (209)
T COG2518 60 MVARMLQLLEL------KP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-LGYENVTVRHGDGS 130 (209)
T ss_pred HHHHHHHHhCC------CC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-cCCCceEEEECCcc
Confidence 33455666655 33 379999999999999998875 688888877555555533332 344 6777777754
Q ss_pred ccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 271 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.---+...||.|++..+.-.. =..+.+.|+|||++++-
T Consensus 131 ~G~~~~aPyD~I~Vtaaa~~v-------P~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAAPEV-------PEALLDQLKPGGRLVIP 168 (209)
T ss_pred cCCCCCCCcCEEEEeeccCCC-------CHHHHHhcccCCEEEEE
Confidence 432244789999976553222 23456789999999984
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-07 Score=98.95 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=74.4
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCcccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAHCS-- 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~~s-- 285 (617)
+.+|||+|||+|..+.++++. .|+++|+++.++..++. .+.+.|++ +.+...|...++ +.+++||.|++.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 368999999999888777653 59999999988887774 44455654 567778877766 456789999852
Q ss_pred ---cccccccc----------------ccceEEEEecccccCCceeeecChhhh
Q 007128 286 ---RCRIDWLQ----------------RDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 286 ---~~l~h~~~----------------~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
...+...+ ....+|.++.+.|||||++++++-...
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 11111101 112468899999999999999865543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-07 Score=95.92 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=73.5
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccc---
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCS--- 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s--- 285 (617)
+.+|||+|||+|..+..+++. .|+++|+++.++..++.+. ...++ ++.+...|...++...+.||.|++.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 368999999999988777653 4899999998887776433 34454 4567777777766555679999852
Q ss_pred -c-cccc--------ccc--------ccceEEEEecccccCCceeeecChhhhc
Q 007128 286 -R-CRID--------WLQ--------RDGILLLELDRLLRPGGYFAYSSPEAYA 321 (617)
Q Consensus 286 -~-~l~h--------~~~--------~~~~~L~el~RvLrPGG~lvis~p~~~~ 321 (617)
. ..+. +.. ....+|.++.++|||||+++.++-...+
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 1111 100 1123888899999999999998655443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-07 Score=97.68 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=79.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh-hhhhhcccCCcchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH-NWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
..|||+|||+|.+|.+-++.|.- .|+.+|. +..++.|.+. |+-..+. ...+++.. ..||+|.|+-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH-
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH-
Confidence 38999999999888777777662 3555553 4444444333 4322111 01122222 99999999877772
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+..++-.+.+.|+|||++|++--.. -.++|.+.++. +|+.+.... .+.=..|+++|+
T Consensus 238 ------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~--------~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE--------EGEWVALVFKKK 295 (295)
T ss_dssp ------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE--------ETTEEEEEEEE-
T ss_pred ------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE--------ECCEEEEEEEeC
Confidence 3457788999999999999987765 44567777776 888752332 245678888875
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7e-07 Score=92.86 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=76.8
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC--cchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
+-++|||+|||+|.++.+.++.|.. .|+.+|. +-.++.+++. |+-...+.-.-.....+ ..||+|.|+-+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 4568999999999999999998773 3666664 4555555554 22111121111112233 599999996633
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~ 581 (617)
. . +..+.-++.|.|||||++|++--.+ ..+.+.+.+.+-+|+.+
T Consensus 240 ~-v------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 240 E-V------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred H-H------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEe
Confidence 3 2 2457788999999999999998654 34457777777788885
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-06 Score=90.63 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=67.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCccccccccccc--CCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKRL--PYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~l--pf~~~sFDlV~~ 284 (617)
.++||+||||.|.++..++++ +|+.+|+++..+..++..+... ....+.+..+|.... ..+++.||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 468999999999999988875 4677888887666665433221 123466666775332 123568999997
Q ss_pred cccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 285 SRCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 285 s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
... .++... ...+++.+.++|+|||.++.-..
T Consensus 172 D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 172 DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 532 222111 02468889999999999987543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.8e-07 Score=99.10 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=70.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSR- 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~- 286 (617)
.+|||+|||+|..+..+++. .|+++|+++.++..++ +.+.+.++ ++.+..+|+..++ ++ ++||+|++.-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 68999999999998887753 4899999998877776 34444554 3677777876653 33 6899998631
Q ss_pred ----cccc------cccc----------cceEEEEecccccCCceeeecChhh
Q 007128 287 ----CRID------WLQR----------DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 287 ----~l~h------~~~~----------~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
..+. |... ...+|.++.++|||||.+++++-..
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1010 0000 0236888999999999999875443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-07 Score=97.95 Aligned_cols=103 Identities=14% Similarity=0.290 Sum_probs=67.3
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEee----cccccchhhhhhhcc--cCCcchhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYD----RGLIGSIHNWCEAYS--TYPRTYDLLH 525 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~----rgl~~~~~~~~e~~~--~~p~tfDlvh 525 (617)
++....+.|||+|||+|.++..++++ ++ +++.+|.+.+++.+.+ .|+-..++..+.++. .+| .+|+|.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~---~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~ 220 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVL 220 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC---EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEE
Confidence 34455678999999999999999876 23 4555555556554433 344222222223322 234 479988
Q ss_pred hhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 526 AWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 526 ~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
..+++++.... ....+|.++.|.|||||.++|.|.
T Consensus 221 ~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77777643211 235799999999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-06 Score=89.75 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=65.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
+++||+||||+|.++..+++. .++++|+++..++.++..+.... ...+.+...|... +...+++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 358999999999988877654 48888998877766654332211 1234444455432 22224689999975
Q ss_pred ccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 286 RCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 286 ~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
.. .+.... ...+++.+.++|+|||.+++...
T Consensus 153 ~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 153 ST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred CC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 43 222111 12456789999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-06 Score=90.54 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=77.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.+ .|+++|+++.++..++ ++..++.+..+|+..+.. +.+||+|+++-.+.+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar-----~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK-----RLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 48999999999988777553 5889999886654443 333356677788776653 4689999997664442
Q ss_pred ccc-------------------cceEEEEecccccCCceeeec--ChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 292 LQR-------------------DGILLLELDRLLRPGGYFAYS--SPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 292 ~~~-------------------~~~~L~el~RvLrPGG~lvis--~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
... ....+..+.++|+|+|.+.+. ..+.|+-. -. -+++.+++++.||..
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s-l~---~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT-MK---SNKYLKWSKQTGLVT 209 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc-CC---HHHHHHHHHhcCcEe
Confidence 111 012446667888999977654 22222111 11 167889999999954
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-07 Score=89.04 Aligned_cols=115 Identities=18% Similarity=0.092 Sum_probs=75.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchh-------hhhhhcccCCcchhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIH-------NWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~-------~~~e~~~~~p~tfDlvh~~~ 528 (617)
..-|.++|+|||+|--+..+++.-- +|+++|- +.||++|...=-+...| +-.+++..-++|.|||.|.+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3445799999999944445555433 7888884 79999876553322222 21123332269999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcc-eEE---EecChhHHHHHHHhhhhcccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTG-FVI---IRDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG-~~i---i~~~~~~~~~~~~~~~~~~w~ 579 (617)
.++- ||++.++.++.|||||.| .+. .+|.....-+.-++..+++|+
T Consensus 109 a~HW-----Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AVHW-----FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hHHh-----hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 9984 489999999999999977 442 232333334455555555553
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.6e-07 Score=90.97 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=72.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcc--cCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYS--TYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~--~~p-~tfDlvh~~~~ 529 (617)
..|||+|||+|.++..|+.+.-. .+|+.+|. +.++..|..+ |+ +-.++.-...++ .+| .+||.|+.+.-
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 46999999999999999976211 26666664 5666555432 32 111111111111 134 68999986532
Q ss_pred hhhhh----hcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhcc-cccc
Q 007128 530 FSDIE----KRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALN-WEAV 581 (617)
Q Consensus 530 ~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~-w~~~ 581 (617)
.++.. ..+...+.+|.++.|+|||||.|++... ....+++.+.+.... |+.+
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 22111 1334446799999999999999987654 445666666655543 6653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.8e-07 Score=92.31 Aligned_cols=116 Identities=15% Similarity=0.221 Sum_probs=74.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-CCCcccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-GIPAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~ 267 (617)
.|.+.+...+.. . ..+++|||||||+|.++..++.. .++++|+++..++.++..+.... ..++.+..+
T Consensus 52 ~y~~~m~~~l~~------~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~ 124 (262)
T PRK04457 52 AYTRAMMGFLLF------N-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA 124 (262)
T ss_pred HHHHHHHHHHhc------C-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC
Confidence 466666444432 1 22368999999999999888654 58999999987776664433221 234666777
Q ss_pred ccccc-CCCCCccccccccccc-ccccc--ccceEEEEecccccCCceeeec
Q 007128 268 GTKRL-PYPSRSFELAHCSRCR-IDWLQ--RDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 d~~~l-pf~~~sFDlV~~s~~l-~h~~~--~~~~~L~el~RvLrPGG~lvis 315 (617)
|.... +-..++||+|++...- ..... ....+++++.++|+|||.+++.
T Consensus 125 Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 125 DGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 75432 2223689999864210 01110 0135788999999999999984
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-06 Score=93.85 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=84.9
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHH--H--HH---hCCC
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQF--A--LE---RGIP 261 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~--a--~~---rg~~ 261 (617)
.|.+.+.+..-. .....++||+||||+|..+..+++. .|+++|+++.+++.|+.-. . .. ....
T Consensus 135 iYHE~Lvhp~m~------~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR 208 (374)
T PRK01581 135 IYHEALVHPIMS------KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR 208 (374)
T ss_pred HHHHHHHHHHHH------hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc
Confidence 566776653322 1223468999999999988888764 4888999887776665210 0 00 1235
Q ss_pred cccccccccc-cCCCCCccccccccccccccccc-----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHH
Q 007128 262 AYLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSA 335 (617)
Q Consensus 262 ~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~ 335 (617)
+.+...|+.. ++-.++.||+|++... -..... ...+++.+.+.|+|||++++........ ...+..+.+
T Consensus 209 V~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~----~~~~~~i~~ 283 (374)
T PRK01581 209 VNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA----PLVYWSIGN 283 (374)
T ss_pred eEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh----HHHHHHHHH
Confidence 6666777655 3444568999997631 111000 0237788999999999998864322111 122234566
Q ss_pred HHHHhhhh
Q 007128 336 LVERMCWR 343 (617)
Q Consensus 336 l~~~~gf~ 343 (617)
.+++.++.
T Consensus 284 tL~~af~~ 291 (374)
T PRK01581 284 TIEHAGLT 291 (374)
T ss_pred HHHHhCCc
Confidence 66766663
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.8e-07 Score=91.49 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=68.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
-.+|||+|||+|.++..|++.+. .|+.+|. +++++.|.++- +...++....+++..+.+||+|.+..++.|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 35799999999999999998776 4667774 67777776552 1112222223344334899999999999875
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
... ++..++.++.+++++++.+.+...
T Consensus 141 ~~~--~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 PQE--DAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CHH--HHHHHHHHHHhhcCCeEEEEECCc
Confidence 422 567889999998876666555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-06 Score=96.51 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=80.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhH--HHH-H----hCCCcccccccccc-cCCCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQ--FAL-E----RGIPAYLGVLGTKR-LPYPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~--~a~-~----rg~~~~~~~~d~~~-lpf~~~sFDlV 282 (617)
.++|||||||+|..+..++++ .|+++|+++.+++.++.. +.. . ...++++...|... +...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 468999999999999887754 588899988877766631 111 0 11345666677654 23334689999
Q ss_pred ccccccccccccc-----ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 283 HCSRCRIDWLQRD-----GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
++... .+..... ..+++.+.+.|+|||.+++........ .+.+.++.+.+++.||
T Consensus 378 i~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 378 IVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCC
Confidence 97643 2221111 135678899999999999865333222 2234567778888888
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-06 Score=87.67 Aligned_cols=128 Identities=17% Similarity=0.247 Sum_probs=86.5
Q ss_pred hhccccCccchhhHHHhhhcchhhHhhhcCC-c-eEEEEeecCCC-CCceEEEee----ccc---c----cchhhhhhhc
Q 007128 449 LLSPKIQSNSLRNLMDMKAHLGSFAAALKEK-D-VWVMSVVPEDG-PNTLKLIYD----RGL---I----GSIHNWCEAY 514 (617)
Q Consensus 449 ~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~-~-~~v~~v~~~~~-~~~l~~~~~----rgl---~----~~~~~~~e~~ 514 (617)
+|+..+.......|||+|||.|..+-.|+++ . + -|+.++. +.+.+.|.+ .++ | +++..|...+
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 3444344444778999999999999999987 3 4 3444443 222222211 112 3 3333444433
Q ss_pred ccCCcchhhhhhhhhhh----------h----hhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 515 STYPRTYDLLHAWTVFS----------D----IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 515 ~~~p~tfDlvh~~~~~~----------~----~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.. .+||+|.|+==|- + -+.-.|++++++.=-.++|||||++.+-.+++-+.++-.++++++|..
T Consensus 112 ~~--~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 112 VF--ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEP 189 (248)
T ss_pred cc--cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCc
Confidence 32 6799997643221 1 113568889999999999999999999999999999999999999997
Q ss_pred c
Q 007128 581 V 581 (617)
Q Consensus 581 ~ 581 (617)
.
T Consensus 190 k 190 (248)
T COG4123 190 K 190 (248)
T ss_pred e
Confidence 3
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-06 Score=89.23 Aligned_cols=136 Identities=20% Similarity=0.340 Sum_probs=82.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec---cc---ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR---GL---IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r---gl---~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|+...- ...|+.+|. +.+++.+.++ +. +-.++ ++.+++. +++||+|.++--+.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~ 186 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYI 186 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCcC
Confidence 3699999999999999987531 114556663 4555554443 11 11111 2222221 27899998742111
Q ss_pred ----------hhhhcC------------CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCC
Q 007128 532 ----------DIEKRG------------CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASS 589 (617)
Q Consensus 532 ----------~~~~~~------------c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 589 (617)
.+..+. -....++.++.++|+|||++++.......+.++.++...+|..+....| .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d--~ 264 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD--L 264 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC--C
Confidence 000000 0124677888899999999999776666677899999888876522223 2
Q ss_pred CCCCCCCeEEEEEEe
Q 007128 590 DSDKDGDEVVFIVQK 604 (617)
Q Consensus 590 ~~~~~~~~~~l~~~K 604 (617)
.+.+++++++|
T Consensus 265 ----~~~~r~~~~~~ 275 (275)
T PRK09328 265 ----AGRDRVVLGRR 275 (275)
T ss_pred ----CCCceEEEEEC
Confidence 45678888765
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-06 Score=83.77 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=84.3
Q ss_pred eCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhh
Q 007128 174 KGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 174 ~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~ 251 (617)
..+..-|.|.|.||--..++|.+ +|.+.. -..+....++||+|+|.|.++..++.. .|.+.++|..|...
T Consensus 78 ~TdING~lgrGsMFifSe~QF~k----lL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-- 149 (288)
T KOG3987|consen 78 QTDINGFLGRGSMFIFSEEQFRK----LLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-- 149 (288)
T ss_pred hhccccccccCceEEecHHHHHH----HHhcCC--CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH--
Confidence 34555677888999888776644 333311 114455679999999999999999886 68888887765432
Q ss_pred hHHHHHhCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccC-Cceeeec
Q 007128 252 IQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFAYS 315 (617)
Q Consensus 252 ~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrP-GG~lvis 315 (617)
-...+.++ ......--.+-+||+|.|.+.+ .-..++..+|+.++.+|+| +|.++++
T Consensus 150 ---L~kk~ynV----l~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 150 ---LKKKNYNV----LTEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ---HhhcCCce----eeehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 22333332 2222222233469999998764 4444557899999999999 8988874
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-07 Score=81.13 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=58.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh----cccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA----YSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~----~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..+++..-- ..|+.+|. +.+++.+.++ ++ ..+...+.+ ....+.+||.|.+....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCcc
Confidence 47999999999999999875211 24566663 4555444321 22 111111111 11223789999875544
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
. ....++.++.|+|||||+|++.
T Consensus 99 ~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 3 2357899999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.6e-07 Score=90.71 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=60.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-eecccc--------------cchhhhhhhcccCC----c
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-YDRGLI--------------GSIHNWCEAYSTYP----R 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-~~rgl~--------------~~~~~~~e~~~~~p----~ 519 (617)
.+|||+|||.|.-+.+|+++|. +|+.+|. +..++.+ .+.|+- ..+.-.+.++..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3799999999999999999988 5666663 3333321 112220 01222334443333 4
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceE
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ 557 (617)
+||+|....+|.|+.. ...+..+..|.+.|||||++
T Consensus 113 ~fD~i~D~~~~~~l~~--~~R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 113 PVDAVYDRAALIALPE--EMRQRYAAHLLALLPPGARQ 148 (213)
T ss_pred CcCEEEechhhccCCH--HHHHHHHHHHHHHcCCCCeE
Confidence 6888887777777642 24567899999999999963
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-06 Score=90.81 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=79.4
Q ss_pred CccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccc----ccccccccc--------hhhhhccCCCccchhh
Q 007128 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVA----SFGAYLLSS--------DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 184 ~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G----~~~~~L~~~--------~V~gvDis~~dl~~a~ 251 (617)
.|.|.+...++ +.+.+.+.. .. ..-+|+..||++| +++..|.+. .|+|+|++...++.|+
T Consensus 93 eT~FFRd~~~f-~~L~~~~~~------~~-~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 93 LTAFFREAHHF-PILAEHARR------RS-GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred CCCccCCcHHH-HHHHHHHHh------cC-CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 34555655555 334333321 11 2368999999999 444444331 4888899888777665
Q ss_pred hHHHH---HhC----------------------------CCcccccccccccCCC-CCccccccccccccccccc-cceE
Q 007128 252 IQFAL---ERG----------------------------IPAYLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR-DGIL 298 (617)
Q Consensus 252 ~~~a~---~rg----------------------------~~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h~~~~-~~~~ 298 (617)
...=. -++ -.+.|...|....+++ .+.||+|+|.++++++... ...+
T Consensus 165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~v 244 (287)
T PRK10611 165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERI 244 (287)
T ss_pred hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHH
Confidence 32100 000 0134555666554443 5789999999998877443 2469
Q ss_pred EEEecccccCCceeeecC
Q 007128 299 LLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 299 L~el~RvLrPGG~lvis~ 316 (617)
+..+.+.|+|||+|++..
T Consensus 245 l~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHhCCCcEEEEeC
Confidence 999999999999998853
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-07 Score=92.46 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=80.6
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
...++||.|+|.|..+..|+-. .|..+|..+..+..|+........-...+.+...+++..+.++||+|.+-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999877654 4555666665555554332222222234444556666545679999999999887
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhh-------cCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAY-------AQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~-------~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
..++. ..+|+.+...|+|+|++++-..... ..+....+.-+.+.++++++|++++..+
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 76543 4699999999999999998432221 1111111222678999999999887654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.4e-07 Score=89.52 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=63.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-eecccc--------------cchhhhhhhcccC---C-cc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-YDRGLI--------------GSIHNWCEAYSTY---P-RT 520 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-~~rgl~--------------~~~~~~~e~~~~~---p-~t 520 (617)
+|||+|||.|.-+.+|+++|. +|+++|. +..++.+ .++|+. ..++-++.++..+ + .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999988 5666663 3433322 234441 1122234444333 2 57
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
||+|....+|.|+.. ......+..|.++|||||+++
T Consensus 117 fd~v~D~~~~~~l~~--~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 117 VDAVYDRAALIALPE--EMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred eeEEEehHhHhhCCH--HHHHHHHHHHHHHcCCCCeEE
Confidence 899988888887742 245688999999999999643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-06 Score=89.34 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=76.3
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccCC-cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STYP-RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~p-~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..+++. +. +++.+|. +.+++.+.++ |+ ..++-.+.++ ..++ ++||+|.++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcCCceeEEEECCCC
Confidence 36999999999999999975 33 4556663 4555544332 32 1111111111 2233 889999874322
Q ss_pred h------hhhhcCC----------------CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 531 S------DIEKRGC----------------SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~------~~~~~~c----------------~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
. ++..... ....++.++.|+|+|||.+++.......++++++++..+|+.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 1 1100000 1236788999999999999999887777889999999999876
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-05 Score=77.00 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=61.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~ 540 (617)
.|=|+|||-+.+|.++. .+..|.+..-+...+.+-. .++.. .|+++ .+.|++.+-..+. ..|+
T Consensus 75 viaD~GCGdA~la~~~~-~~~~V~SfDLva~n~~Vta-------cdia~--vPL~~--~svDv~VfcLSLM-----GTn~ 137 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP-NKHKVHSFDLVAPNPRVTA-------CDIAN--VPLED--ESVDVAVFCLSLM-----GTNW 137 (219)
T ss_dssp -EEEES-TT-HHHHH---S---EEEEESS-SSTTEEE-------S-TTS---S--T--T-EEEEEEES--------SS-H
T ss_pred EEEECCCchHHHHHhcc-cCceEEEeeccCCCCCEEE-------ecCcc--CcCCC--CceeEEEEEhhhh-----CCCc
Confidence 49999999999998865 3445555555443222111 11111 22222 9999988655555 2288
Q ss_pred ccchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccc
Q 007128 541 EDLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~ 581 (617)
.+.|.|-.|||||||.++|.+-.+ ..+.-.+.+++++++..
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999877 34455567888999984
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-07 Score=87.44 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=69.2
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cC--CCCCcccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LP--YPSRSFELAHCSRCRI 289 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lp--f~~~sFDlV~~s~~l~ 289 (617)
.+||||||.|.+...++.. +++|+|+...-+..+..+.......++.+..+|+.. ++ ++++++|.|+..+- -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 7999999999999999875 689999998877777644444444467787777665 22 56689999986543 3
Q ss_pred cccccc--------ceEEEEecccccCCceeeecC
Q 007128 290 DWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
+|.... ..++.++.++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333221 248899999999999999864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-06 Score=92.59 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=86.3
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.++ |+ +-.++ |+.+....-..+||+|.|+-=+-
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a---~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA---FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 6999999999999988753 33 5666664 6777666554 22 11111 33222110125799998743110
Q ss_pred -----h-------------hhhcCC---CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCC
Q 007128 532 -----D-------------IEKRGC---SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSD 590 (617)
Q Consensus 532 -----~-------------~~~~~c---~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 590 (617)
+ +..... .+..++.+..+.|+|||++++-...+--+.+++++...+|+.+....| .
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l- 407 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--L- 407 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--C-
Confidence 0 000000 122566777889999999999888888889999999999987633434 2
Q ss_pred CCCCCCeEEEEEEe
Q 007128 591 SDKDGDEVVFIVQK 604 (617)
Q Consensus 591 ~~~~~~~~~l~~~K 604 (617)
.+.++++++++
T Consensus 408 ---~G~dR~v~~~~ 418 (423)
T PRK14966 408 ---AGLDRVTLGKY 418 (423)
T ss_pred ---CCCcEEEEEEE
Confidence 56788988876
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.4e-06 Score=88.07 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=86.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc---ccch-hhhhhhcccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSI-HNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~-~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|.++.+|+.. +. .|+.+|. +.++++|.+. |+ +-.+ .++.++++. ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~---~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA---EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999874 23 5666664 5666655543 22 1111 244443321 4899998741
Q ss_pred -------------hhhhhh-----h---cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhh-hccccccccccc
Q 007128 529 -------------VFSDIE-----K---RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLR-ALNWEAVATTAD 586 (617)
Q Consensus 529 -------------~~~~~~-----~---~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 586 (617)
++.|-. . ..-.+..++.+..++|+|||++++-.....-+.+++++. ..+|..+....|
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 111100 0 000234688899999999999999888887788888887 578876523333
Q ss_pred CCCCCCCCCCeEEEEEEe
Q 007128 587 ASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 587 ~~~~~~~~~~~~~l~~~K 604 (617)
. .+.++++++++
T Consensus 271 --~----~g~~R~~~~~~ 282 (284)
T TIGR00536 271 --L----NGKERVVLGFY 282 (284)
T ss_pred --C----CCCceEEEEEe
Confidence 2 55788888875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-06 Score=82.55 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=82.6
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-C-cccccccccccCCCCCccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-P-AYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~-~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
++.+|||.|.|+|.++.+|+.. .|++.|+-+.....|+.++.. .++ + +.+...|+...-+++ .||+|+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~--- 168 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVF--- 168 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEE---
Confidence 3479999999999999999852 588888887666666644333 233 2 666677877766665 899997
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+...+ +..++..+..+|+|||.+++-.|..... +.....++..||..+..
T Consensus 169 --LDmp~-PW~~le~~~~~Lkpgg~~~~y~P~veQv--------~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 169 --LDLPD-PWNVLEHVSDALKPGGVVVVYSPTVEQV--------EKTVEALRERGFVDIEA 218 (256)
T ss_pred --EcCCC-hHHHHHHHHHHhCCCcEEEEEcCCHHHH--------HHHHHHHHhcCccchhh
Confidence 33333 4679999999999999999976665311 23334445558865543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.4e-06 Score=86.13 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=77.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC---CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
..+||||||.|.+...+|++ +++||++...-+..+. +.+.+.++ ++.+...|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999986 5899999887776665 66777888 8888888876542 45569999986654
Q ss_pred cccccccc--------ceEEEEecccccCCceeeecC
Q 007128 288 RIDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
-+|+... ..+++.+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 3454332 238889999999999999975
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.1e-06 Score=100.39 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=70.0
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---Cccccccccccc-CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRL-PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~l-pf~~~sFDlV~~s~~l 288 (617)
++|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ .+.+..+|+.+. .-..++||+|++.--.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~-N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER-NFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 68999999999999998865 49999999999888874 4444444 367777776442 1114689999975211
Q ss_pred cc----------cccccceEEEEecccccCCceeeecC
Q 007128 289 ID----------WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h----------~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+. ...+...++..+.++|+|||.++++.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 10 01111235677889999999998864
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.3e-06 Score=86.04 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccch-hhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSI-HNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~-~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..|||+|||+|.++..++..+. -.|+.+|. +.++..+.++ |+ +-.+ .++.+.++ +++||+|+++.-|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999999988653 25666663 4565544332 22 1111 13322222 279999998643221
Q ss_pred hhh-----------------cCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhccccc
Q 007128 533 IEK-----------------RGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~-----------------~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~ 580 (617)
... ....+..++.++.|+|||||.+++..+. ...+++...+++-+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0011456788999999999999985433 23445555555545543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.1e-06 Score=84.38 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=65.4
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-----f~~~sFDlV 282 (617)
++|||+|||+|..+..|+.. .|+++|+++.....++. ...+.++ .+.+..+|+... + .+.++||+|
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~-n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLE-FIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 68999999999866655432 59999999987776664 3344454 356666665442 1 124689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
++..- ......++.++.++|||||.+++.
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 85421 122245778889999999999875
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.75 E-value=2e-06 Score=87.38 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=68.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||+|.|.++..++++ .++.+|+ |..+..+. + ...+.+..+|+. -++|. +|+++..+++++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H-TTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c-ccccccccccHH-hhhcc--ccceeeehhhhh
Confidence 368999999999999999876 3566666 22333332 2 446778888887 67775 999999999888
Q ss_pred ccccc-ceEEEEecccccCC--ceeeecChhh
Q 007128 291 WLQRD-GILLLELDRLLRPG--GYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPG--G~lvis~p~~ 319 (617)
|.++. ..+|+++++.|+|| |.|+|.....
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 87653 35999999999999 9999975443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.5e-05 Score=82.76 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=60.7
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--ccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYL 264 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~ 264 (617)
+..|+..+.++|........+.+...+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++. +.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 467888888887542111123344578999999999776666543 58999999988888875444331343 223
Q ss_pred cc-cccccc----CCCCCcccccccccc
Q 007128 265 GV-LGTKRL----PYPSRSFELAHCSRC 287 (617)
Q Consensus 265 ~~-~d~~~l----pf~~~sFDlV~~s~~ 287 (617)
.. .+...+ ..+++.||+|+|+--
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCC
Confidence 21 222221 124578999999854
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.9e-06 Score=90.25 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=67.8
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc----cCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR----LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~----lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..+|+.. +++.+++||+|++.--
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 68999999999999998865 58999999999888874 4444444 47777777653 3455678999986532
Q ss_pred cccccccceEEEEecccccCCceeeecChh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.... ...+..+.+ ++|+++++++..+
T Consensus 377 --r~g~-~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 377 --RAGA-AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred --CcCh-HHHHHHHHh-cCCCeEEEEEeCh
Confidence 1111 123333333 6899999998543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.5e-06 Score=89.91 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc------c--ccchhhhhhhcccCCcch-----hhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG------L--IGSIHNWCEAYSTYPRTY-----DLLH 525 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg------l--~~~~~~~~e~~~~~p~tf-----Dlvh 525 (617)
.+|||+|||+|.++..|++...-..+++++|. +.||+.+.++- + .+...|-.+.++ ++..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 46999999999999999876211237889995 68887776651 1 111112221111 22222 2344
Q ss_pred hhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 526 AWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 526 ~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+...|.++.. -+...+|.++.+.|+|||.|+|.-
T Consensus 144 ~gs~~~~~~~--~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTP--EEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCH--HHHHHHHHHHHHhcCCCCEEEEec
Confidence 4556665531 245678999999999999999744
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.3e-06 Score=86.50 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=73.9
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+|||+|||+|.++..++.. .|+++|+++..+..|+ +.+...++ ++.+...|.. -+.. ++||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 7999999999999888865 5899999998888777 56666664 2223322211 1222 489999987321111
Q ss_pred c-----c-----c--------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 292 L-----Q-----R--------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 292 ~-----~-----~--------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
. + + ...++.++.+.|+|||.+++..-.. . -+.+.+++...|+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~----q-----~~~v~~~~~~~~~ 255 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT----Q-----GEAVKALFEDTGF 255 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC----c-----HHHHHHHHHhcCC
Confidence 1 0 0 0136677888999999999852111 1 1457778888883
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.6e-05 Score=74.67 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=70.6
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCc---eEEEeecccccchhhhhhhcccCC----cchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNT---LKLIYDRGLIGSIHNWCEAYSTYP----RTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~---l~~~~~rgl~~~~~~~~e~~~~~p----~tfDlvh~ 526 (617)
++.++-.+|||+||++|||+.++.+++.....|+.+|...+ -.+-.-+|-+-.. .....+.... ..||+|.|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~-~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNP-ENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEE-EHSHHGGGSHGTTTCSESEEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchh-hHHHhhhhhccccccCcceecc
Confidence 44556688999999999999999998722234555553222 1111112221110 0111222221 58999999
Q ss_pred hhhhhhhhh----cCC---CcccchhhccccccCcceEEEecCh-----hHHHHHHHhhhhcccccccccccCCCCCCCC
Q 007128 527 WTVFSDIEK----RGC---SGEDLLLEMDRILRPTGFVIIRDKQ-----SVVDFVKKYLRALNWEAVATTADASSDSDKD 594 (617)
Q Consensus 527 ~~~~~~~~~----~~c---~~~~~l~Em~RiLrPgG~~ii~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 594 (617)
+..+.-... +.- ....+|.=+-..|||||.+|+.--. ..+..++...+..++-. +.. ..+.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K------p~~-sr~~ 170 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK------PPS-SRSE 170 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-------TT-SBTT
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE------CcC-CCCC
Confidence 884431000 000 1123344444679999988874322 34555555444444433 212 1235
Q ss_pred CCeEEEEEEe
Q 007128 595 GDEVVFIVQK 604 (617)
Q Consensus 595 ~~~~~l~~~K 604 (617)
..|.+|||++
T Consensus 171 s~E~Ylv~~~ 180 (181)
T PF01728_consen 171 SSEEYLVCRG 180 (181)
T ss_dssp CBEEEEESEE
T ss_pred ccEEEEEEcC
Confidence 6888998875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.9e-06 Score=85.62 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccc---cchh-hhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLI---GSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~---~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.+++.|++. +. .|+.+|. +++++.+.++ |+. -.++ +..+.++. ..+||+|+++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 36999999999999888753 23 3555553 4555544432 321 1122 21122221 2789999987
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
..+.++. .|+.|+|+|||.+++-.
T Consensus 150 ~~~~~~~----------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP----------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh----------HHHHHhcCcCcEEEEEE
Confidence 7665443 47889999999999854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-06 Score=86.83 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=73.0
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC-cchhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP-RTYDLLHAWT-- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p-~tfDlvh~~~-- 528 (617)
.+|||+|||+|.++.+|+.. +. .|+.+|. +.+++.|.++ |+-..+...+.+ +..++ .+||+|.++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 46999999999999999975 33 5666674 5666666544 331111111111 12234 6899998751
Q ss_pred ----hhhhhhh---c--C----------CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 529 ----VFSDIEK---R--G----------CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ----~~~~~~~---~--~----------c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.+.++.. + . -....++.+..++|+|||++++-..... +++++++...+|.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCce
Confidence 1111100 0 0 0124678899999999999998776655 68888888766654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.8e-06 Score=92.40 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=77.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----cccccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
+|||+|||+|.++..++++.-. ..|+.+|. +.+++.+.+ .++-+.++ +..-++..++.||+|.++--|++...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCcc
Confidence 5999999999999999876211 13555553 355544432 23322221 11112223589999999887764210
Q ss_pred -cCCCcccchhhccccccCcceEEEecCh--hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 536 -RGCSGEDLLLEMDRILRPTGFVIIRDKQ--SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 536 -~~c~~~~~l~Em~RiLrPgG~~ii~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
..-..+.++.++.|.|||||.++|-... ..-..+++.... .+. +.+ ..+-+|+-|+|.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~---la~-------~~~f~v~~a~~~ 337 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEV---LAQ-------TGRFKVYRAIMT 337 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEE---EEe-------CCCEEEEEEEcc
Confidence 1113468899999999999999775432 223334433332 122 222 346788888763
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.8e-06 Score=90.87 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccC--C--CCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLP--Y--PSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lp--f--~~~sFDlV~~s 285 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+.... + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 68999999999988664432 5899999998888777 44444554 3567777765531 1 24689999976
Q ss_pred ccccccc--------cccceEEEEecccccCCceeeecC
Q 007128 286 RCRIDWL--------QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 286 ~~l~h~~--------~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
--.+.-. .....++..+.++|+|||++++.+
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 3211100 011223445678999999999754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.2e-05 Score=77.85 Aligned_cols=114 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+++|||||+|+++..++. ..|+++|-++..+...+ +.+.+.++ ++.+..+++...--...+||.|+....
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--
Confidence 46899999999999988873 25899998887766655 34444444 466666665443112227999987654
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
.....+|+.+...|||||++++..-.. +......+.+++.||
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~naitl--------E~~~~a~~~~~~~g~ 153 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAITL--------ETLAKALEALEQLGG 153 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 233568888999999999999853221 112345556677777
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=6e-06 Score=89.19 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe----eccc--ccchh-hhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY----DRGL--IGSIH-NWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~----~rgl--~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.|||+|||+|.|+..|+.+.-. .|++++|. +.++..+. .+|+ +-.++ |..+-+..+| +++|.|+++.-.+
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 5999999999999999976210 16666664 34443333 3344 11111 2211122344 9999998752222
Q ss_pred hhh-hc-CCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhc
Q 007128 532 DIE-KR-GCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRAL 576 (617)
Q Consensus 532 ~~~-~~-~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~ 576 (617)
... .| |-.....|.|+.|+|||||.+.++.. ....+.+.+.+...
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 100 00 11125799999999999999877544 44555555554443
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.3e-05 Score=78.94 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=61.9
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~ 529 (617)
..|||+|||+|.++..++.. +. .|+.+|. +.+++.+.++ |+ +-.++ +..+.+......+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 36999999999999888743 33 4556663 5565554432 22 11111 1111122122334555431
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRAL 576 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~ 576 (617)
...++..++.++.|+|+|||++++..... .+.++.+.++.+
T Consensus 117 ------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 117 ------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred ------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 12256789999999999999998886543 334455556554
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.9e-06 Score=80.35 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=68.5
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccc----ccccccccc---------hhhhhccCCCccchhh
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVA----SFGAYLLSS---------DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G----~~~~~L~~~---------~V~gvDis~~dl~~a~ 251 (617)
|.|.+....+......+++...... ..+..-+|+..||++| +++..|.+. .|+|+|+++..++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~-~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARA-RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhcccc-CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555444444443211111 2235578999999999 455555441 4788888887776654
Q ss_pred hHHH---HHhCC-------------------------CcccccccccccCCCCCcccccccccccccccccc-ceEEEEe
Q 007128 252 IQFA---LERGI-------------------------PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLEL 302 (617)
Q Consensus 252 ~~~a---~~rg~-------------------------~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el 302 (617)
...= .-+++ .+.|...|..+.+.+.+.||+|+|.++++.+.... ..+++.+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l 161 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRL 161 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHH
Confidence 2100 00011 13344455555333457899999999988775543 4599999
Q ss_pred cccccCCceeeecC
Q 007128 303 DRLLRPGGYFAYSS 316 (617)
Q Consensus 303 ~RvLrPGG~lvis~ 316 (617)
++.|+|||+|++..
T Consensus 162 ~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 162 HRSLKPGGYLFLGH 175 (196)
T ss_dssp GGGEEEEEEEEE-T
T ss_pred HHHcCCCCEEEEec
Confidence 99999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=9e-06 Score=80.09 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=85.5
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchh--hhhhhcccCCcchhhhhhhhhhh--
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIH--NWCEAYSTYPRTYDLLHAWTVFS-- 531 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~--~~~e~~~~~p~tfDlvh~~~~~~-- 531 (617)
..-+-|||||||+|--++.|.+.|- -.+.+|. +.||++|.+|-+-|.+. |--|.+|+=|.|||-+.+-++.+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 3456699999999999999998874 2455664 79999999875543322 44577886679999876433332
Q ss_pred -hhhhcCCCcc-----cchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 532 -DIEKRGCSGE-----DLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 532 -~~~~~~c~~~-----~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
+.. ..|+-. ..+.-+...|++|+..++.=.++..+.+.-|.....|.-
T Consensus 126 cnA~-~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 126 CNAD-KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG 179 (270)
T ss_pred cccC-ccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence 211 122222 346668899999999999999888888888887777765
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.65 E-value=2.9e-06 Score=89.78 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-----cch-hhh-hhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-----GSI-HNW-CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-----~~~-~~~-~e~~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++++. +|+.+|. ++|++.+.+|.- . +.. ..+ +.++...+++||+|.|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999999876 6778884 688888777631 0 000 111 12333446899999999998
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEE
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
.|+... ....++..+.++ .+||.++.
T Consensus 223 ~H~p~~--~~~~ll~~l~~l-~~g~liIs 248 (315)
T PLN02585 223 IHYPQD--KADGMIAHLASL-AEKRLIIS 248 (315)
T ss_pred EecCHH--HHHHHHHHHHhh-cCCEEEEE
Confidence 876522 233456666654 56666554
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.2e-05 Score=77.06 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred HHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcc
Q 007128 462 LMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGE 541 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~ 541 (617)
|-|+|||-+-+|.. ....|.-+.+++++.. -..-++.+ .++. ++|.|++++-..+. ..|+.
T Consensus 184 IaD~GCGEakiA~~-~~~kV~SfDL~a~~~~---------V~~cDm~~--vPl~--d~svDvaV~CLSLM-----gtn~~ 244 (325)
T KOG3045|consen 184 IADFGCGEAKIASS-ERHKVHSFDLVAVNER---------VIACDMRN--VPLE--DESVDVAVFCLSLM-----GTNLA 244 (325)
T ss_pred EEecccchhhhhhc-cccceeeeeeecCCCc---------eeeccccC--CcCc--cCcccEEEeeHhhh-----cccHH
Confidence 89999999988762 2235555666665421 00111111 1222 29999987544444 23888
Q ss_pred cchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 542 DLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 542 ~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+.+.|.+|||||||.++|.+-.+ .......-+..|+++. ...| . ...+.+|+--|+
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~--~~~d--~----~n~~F~lfefkK 303 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV--KHKD--V----SNKYFTLFEFKK 303 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee--eehh--h----hcceEEEEEEec
Confidence 99999999999999999998776 2334566678899998 3443 1 234555555443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.9e-05 Score=87.29 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=66.2
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc----CCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL----PYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l----pf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..+|+... ++.+++||+|++.-..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 58999999999999999864 59999999988887774 4444444 567777786542 3445679999854221
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..-...++..+. .++|++.++++..
T Consensus 373 ---~G~~~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 373 ---KGCAAEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred ---CCCCHHHHHHHH-hcCCCEEEEEcCC
Confidence 110122444433 3789998888743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-06 Score=84.40 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=76.2
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc-CCcchhhhhhhhhh--
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST-YPRTYDLLHAWTVF-- 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~-~p~tfDlvh~~~~~-- 530 (617)
+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.+. |.--...|+.+.++. +...||+|.++-=+
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 6999999999999998754 22 4566664 4565554432 210011133222221 23579999865211
Q ss_pred ----hhhh----hc--CC------C----cccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccccc
Q 007128 531 ----SDIE----KR--GC------S----GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 531 ----~~~~----~~--~c------~----~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
..+. .+ +. + +..++....++|+|||.+++....+-..++..++...+|+. .+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~--~~~~ 239 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIA--RVAS 239 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCc--eeeE
Confidence 1000 00 01 1 23677778899999999999888888888999999989988 5654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.8e-06 Score=81.76 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=58.1
Q ss_pred eEEEeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..++.+ .|+++|+++.++..++ +....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-----~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-----RIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-----hhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999998876542 5888888776554443 333346677788776665 4689999987432
Q ss_pred cccc-cc----------cceEEEEecccccCCce
Q 007128 289 IDWL-QR----------DGILLLELDRLLRPGGY 311 (617)
Q Consensus 289 ~h~~-~~----------~~~~L~el~RvLrPGG~ 311 (617)
.... .+ ...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2110 00 01255666676676665
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.4e-05 Score=84.80 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=66.8
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC-CCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY-PSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+..+.. ..++||+|++.-- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 68999999999999999875 5999999999888877 45555555 47888888876542 3457999986521 0
Q ss_pred ccccceEEEEecccccCCceeeecChh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. ....+.++...++|++.++++..+
T Consensus 251 ~G-~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 RG-IGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CC-ccHHHHHHHHHcCCCeEEEEECCc
Confidence 00 011122223335788888887544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.4e-05 Score=80.68 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=53.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH---hCCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE---RGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~---rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|.|+..+++. .|+++|+++.++.....+.++- ...++. ..+.+.++..-..||+++++.+.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCCceeeeEEEeehHh
Confidence 468999999999999999876 4899999987665422221110 011222 11222222222367877766542
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+..+.++|+| |.+++-
T Consensus 154 ---------~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEEE
Confidence 25567888888 766653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=2.4e-05 Score=81.60 Aligned_cols=134 Identities=24% Similarity=0.302 Sum_probs=85.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhh----
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWT---- 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~---- 528 (617)
+|||||||+|.+|.+|+...-. .+|+.+|. +..+..|.+. |+ .-...+|.+. .+..||+|.++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~---~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP---LRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc---cCCceeEEEeCCCCCC
Confidence 8999999999999999976331 26777774 5555554333 43 1111144433 446889886421
Q ss_pred ---------hhhh-----hhhcCC---CcccchhhccccccCcceEEEecChhHHHHHHHhhhhccc-ccccccccCCCC
Q 007128 529 ---------VFSD-----IEKRGC---SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNW-EAVATTADASSD 590 (617)
Q Consensus 529 ---------~~~~-----~~~~~c---~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~ 590 (617)
++.| +..... ....++.+..++|+|||++++.......+.+++++...++ ..+....|
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d---- 264 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKD---- 264 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEec----
Confidence 1000 000111 2237888999999999999999998888899999999994 43312222
Q ss_pred CCCCCCeEEEEEEe
Q 007128 591 SDKDGDEVVFIVQK 604 (617)
Q Consensus 591 ~~~~~~~~~l~~~K 604 (617)
-.+.++++++++
T Consensus 265 --~~g~~rv~~~~~ 276 (280)
T COG2890 265 --LFGRDRVVLAKL 276 (280)
T ss_pred --CCCceEEEEEEe
Confidence 245677777665
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.3e-05 Score=82.87 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=62.0
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-ccc------cchh-hhhhhcccCCcchhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-GLI------GSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-gl~------~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
..-++|||+|||.|.++..++...- ...|+.+|. +.+++.|.+. ++. -.++ |..+-+...+.+||+|.++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3456899999999999998876421 124566664 5666666544 111 1111 2112233445789999865
Q ss_pred hhhhhhhh-cCCCcccchhhccccccCcceEEE
Q 007128 528 TVFSDIEK-RGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 528 ~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
.|..... ....-..++.++.++|+|||.+++
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 2331110 111235889999999999999998
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.1e-06 Score=82.44 Aligned_cols=100 Identities=23% Similarity=0.198 Sum_probs=66.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh------------CCCcccccccccccCCCC-Ccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER------------GIPAYLGVLGTKRLPYPS-RSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r------------g~~~~~~~~d~~~lpf~~-~sF 279 (617)
..+||+.|||.|.-+..|+++ .|+|+|+|+..+..+..+..... .-++.+.++|+..++... ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 368999999999999999987 49999999876655432211100 012355677887776543 579
Q ss_pred ccccccccccccccc-cceEEEEecccccCCceeee
Q 007128 280 ELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 280 DlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvi 314 (617)
|+|+=..++.....+ ..++.+.+.++|+|||.+++
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 999744333322222 24599999999999999444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=3e-06 Score=84.72 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=55.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc-CC--cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST-YP--RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~-~p--~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.+++.|++....-..|+.+|. +.+++.|.++ |+ ..++-.+.+... ++ ..||+|+++...
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~- 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAAG- 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCCc-
Confidence 36999999999999999875221113555553 5666555443 33 222222222111 12 689999875433
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
..+..++.+.|+|||++++-
T Consensus 157 ---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 ---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------ccccHHHHHhcCcCcEEEEE
Confidence 33556778999999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.3e-05 Score=84.66 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=69.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCCcchhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYPRTYDLLHAWT-- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p~tfDlvh~~~-- 528 (617)
.+|||+|||+|.++.+|+...- ..+|+.+|. +.+++.|.++ |+ +-.++ |+.+.++ +++||+|.++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 4699999999999999986521 125677774 5666666544 33 22222 3222222 26899999751
Q ss_pred ----hhhhhh---hcCC------------CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcc
Q 007128 529 ----VFSDIE---KRGC------------SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALN 577 (617)
Q Consensus 529 ----~~~~~~---~~~c------------~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~ 577 (617)
-+.++. .+.. ....++.+..++|+|||++++-.... ..++.+++....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 111000 0000 12467899999999999999866554 445777777654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.1e-05 Score=78.00 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=74.1
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~ 251 (617)
+..+..|.+. .+....+...+.+.+.+... . ...+|||+|||+|.++..++.+ .|+++|+++..+..++
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-----~--~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-----I--VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-----c--CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3444444332 22334444445555555320 1 1258999999999999764332 5889999887766555
Q ss_pred hHHHHHhCC-Ccccccccccc-cCCCCCcccccccccccccccccc-ceEEEEec--ccccCCceeeecCh
Q 007128 252 IQFALERGI-PAYLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD-GILLLELD--RLLRPGGYFAYSSP 317 (617)
Q Consensus 252 ~~~a~~rg~-~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~--RvLrPGG~lvis~p 317 (617)
+.+...++ ++.+...|+.. ++...++||+|++.-- +.... ..++..+. .+|+|+|++++...
T Consensus 94 -~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 94 -KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 33333343 46666667644 2223457999987632 11111 12233222 34788999888744
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.5e-06 Score=80.89 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=91.8
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh--CCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER--GIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r--g~~~~~~~ 266 (617)
+.+.+.+.+.-.. +...+.+|||...|-|.++...+++ .|+.++.+++-+..|.++--... ...+.+..
T Consensus 118 dP~~Dt~~Kv~~V------~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iil 191 (287)
T COG2521 118 DPLEDTLAKVELV------KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIIL 191 (287)
T ss_pred CcHHHHHhhhhee------ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEec
Confidence 4555666554333 3445689999999999999888876 47778888877766654321111 11345666
Q ss_pred cccccc--CCCCCccccccccccccccccc--cceEEEEecccccCCceeeecChhhh-cCCHHHHHHHHHHHHHHHHhh
Q 007128 267 LGTKRL--PYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 267 ~d~~~l--pf~~~sFDlV~~s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~~w~~l~~l~~~~g 341 (617)
+|+.++ .|+|.+||+|+-.--.+..... -..+-+|++|+|||||.++--+-+.. .+.. ......+.+.+++.|
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG--~d~~~gVa~RLr~vG 269 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG--LDLPKGVAERLRRVG 269 (287)
T ss_pred ccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc--CChhHHHHHHHHhcC
Confidence 676554 4889999999632110000000 13477899999999999986432221 1111 112356788899999
Q ss_pred hhhhhcc
Q 007128 342 WRIAAKR 348 (617)
Q Consensus 342 f~~v~~~ 348 (617)
|.++...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9866543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.2e-06 Score=78.75 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=40.0
Q ss_pred hhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 511 CEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 511 ~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.++++.-+++||+|.+..++.++. +...+|.|+.|+|||||.|+|.|..
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV----DRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC----CHHHHHHHHHHHcCcCeEEEEEECC
Confidence 344542238999999998888775 7889999999999999999988764
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.8e-06 Score=88.16 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=71.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC---Ccchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY---PRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~---p~tfDlvh~~~~~~~ 532 (617)
.|||.|||+|++...++..+. .|..+|. +.|+..+..+ |+-. ++-.+.++... +++||+|.++--|..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 599999999999877776665 5666674 5665544332 3311 11112222222 379999998532210
Q ss_pred ---hhhc--CCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 533 ---IEKR--GCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ---~~~~--~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
...+ ......+|.|+.|+|||||++++-.+... .+++.++..+| ++
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-ch
Confidence 0000 01236799999999999999987765432 56677888888 64
|
This family is found exclusively in the Archaea. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.6e-06 Score=69.98 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=58.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe---eccc---ccchhhhhhhccc-CCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY---DRGL---IGSIHNWCEAYST-YPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~---~rgl---~~~~~~~~e~~~~-~p~tfDlvh~~~~~~~ 532 (617)
+|+|+|||.|.++..+++... ..+..+|. ++.+..+. ..+. +-.++.-...+.. .+.+||+|.+..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 379999999999999987321 24444443 22222221 1111 1112211112221 2488999999888875
Q ss_pred -hhhcCCCcccchhhccccccCcceEEEe
Q 007128 533 -IEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 533 -~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.. ....++..+.+.|||||.+++.
T Consensus 79 ~~~----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh----HHHHHHHHHHHHcCCCCEEEEE
Confidence 32 5678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.55 E-value=1.6e-05 Score=81.82 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCCceeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHhCCC--ccccccccccc---CCCCCcc
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRL---PYPSRSF 279 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~l---pf~~~sF 279 (617)
..+..-+||||.||.|......+.. .|.-.|+++..++..+ +.++++|+. +.|...|+.+. .--+-..
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 4455678999999999766555432 4666788888777776 566777775 36777775432 1112346
Q ss_pred cccccccccccccccc---ceEEEEecccccCCceeeecChhhhcCCHHHH---------HHH-------HHHHHHHHHh
Q 007128 280 ELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSPEAYAQDEEDL---------RIW-------KEMSALVERM 340 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~---------~~w-------~~l~~l~~~~ 340 (617)
++++.+.. +...++. ...|.-+.+++.|||+++.+.-++.+..+... ..| .+|.++.+.+
T Consensus 211 ~l~iVsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 211 TLAIVSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred CEEEEecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 88887754 5554442 23688899999999999999866655443211 235 8899999999
Q ss_pred hhhhhhc
Q 007128 341 CWRIAAK 347 (617)
Q Consensus 341 gf~~v~~ 347 (617)
||+.+..
T Consensus 290 GF~K~~q 296 (311)
T PF12147_consen 290 GFEKIDQ 296 (311)
T ss_pred CCchhhh
Confidence 9976553
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=2.2e-05 Score=94.41 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=76.1
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhC-----------------CCcccccccccccCC
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERG-----------------IPAYLGVLGTKRLPY 274 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg-----------------~~~~~~~~d~~~lpf 274 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+... .+ -++.+..+|.....-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhcc
Confidence 58999999999999888764 599999999988888744432 21 136677777654321
Q ss_pred C-CCccccccccccccccc---------------------ccc----------------ceEEEEecccccCCceeeecC
Q 007128 275 P-SRSFELAHCSRCRIDWL---------------------QRD----------------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 275 ~-~~sFDlV~~s~~l~h~~---------------------~~~----------------~~~L~el~RvLrPGG~lvis~ 316 (617)
. ...||+|+++--.+... ++. .+++.++.++|+|||++++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999863211000 000 124455667999999999842
Q ss_pred hhhhcCCHHHHHHHHHHH-HHHHHhhhhh
Q 007128 317 PEAYAQDEEDLRIWKEMS-ALVERMCWRI 344 (617)
Q Consensus 317 p~~~~~~~~~~~~w~~l~-~l~~~~gf~~ 344 (617)
-. .+. +.+. +++++.||+.
T Consensus 279 G~----~q~-----~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 279 GG----RPG-----QAVCERLFERRGFRI 298 (1082)
T ss_pred Cc----cHH-----HHHHHHHHHHCCCCe
Confidence 11 111 4566 5888888854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.6e-06 Score=80.94 Aligned_cols=101 Identities=16% Similarity=0.431 Sum_probs=64.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH--Hh--CCC-------------------------
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL--ER--GIP------------------------- 261 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~--~r--g~~------------------------- 261 (617)
+..+|||||-.|.++..+++. .|.|+||++.-+..|..+.-. .. .+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 357999999999999888864 699999999877666532110 00 000
Q ss_pred ------cccc----cccc-cccCCCCCccccccccc----ccccccccc-ceEEEEecccccCCceeeec
Q 007128 262 ------AYLG----VLGT-KRLPYPSRSFELAHCSR----CRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 262 ------~~~~----~~d~-~~lpf~~~sFDlV~~s~----~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
+.+. +.+. +-+.+....||+|.|.. +.+.|.++. ..++..+.++|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 0000 01223446799998853 223444442 35999999999999999995
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.2e-06 Score=82.45 Aligned_cols=92 Identities=21% Similarity=0.381 Sum_probs=69.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
+..++||+|||-|+.+..|+.. .-.|...+. +.|...-.+||. +=...+|.+ -+..||+|-|-.|+..-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRCD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhccC-
Confidence 4557999999999999999873 334555553 577777778887 223334542 246899999999998443
Q ss_pred cCCCcccchhhccccccCcceEEEe
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
++..+|.+|++.|+|+|.+|+.
T Consensus 166 ---~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 166 ---RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---CHHHHHHHHHHHhCCCCEEEEE
Confidence 5668999999999999999885
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.7e-05 Score=78.44 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=59.1
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. .. +.+|||||||+|.++..|+++ .|+++|+++.++..+...... ..++.+..+|+.
T Consensus 16 ~~~~~iv~~~~~------~~--~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 16 RVVDRIVEYAED------TD--GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHHHhcCC------CC--cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 445566666554 22 368999999999999999876 589999998777665533222 235677888888
Q ss_pred ccCCCCCcccccccccc
Q 007128 271 RLPYPSRSFELAHCSRC 287 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~ 287 (617)
.++++ .||.|+++..
T Consensus 86 ~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 86 KVDLP--EFNKVVSNLP 100 (258)
T ss_pred cCCch--hceEEEEcCC
Confidence 87776 4898887643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.1e-05 Score=79.50 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
..+.+.+.+.. .. +.+|||||||+|.++..|+++ .|+++|+++.+++.++.... ..++.+..+|+..
T Consensus 30 i~~~i~~~l~~------~~--~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAAGP------QP--GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhcCC------CC--cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhc
Confidence 34455555543 22 368999999999999999876 58999999987766653221 1357778888888
Q ss_pred cCCCCCcccccccc
Q 007128 272 LPYPSRSFELAHCS 285 (617)
Q Consensus 272 lpf~~~sFDlV~~s 285 (617)
+++++-.+|.|+++
T Consensus 99 ~~~~~~~~~~vv~N 112 (272)
T PRK00274 99 VDLSELQPLKVVAN 112 (272)
T ss_pred CCHHHcCcceEEEe
Confidence 87664224677655
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.47 E-value=5.8e-06 Score=79.70 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=64.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--cc-chhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IG-SIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~-~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|+.+.-.. .|+.+|. +++++.+.+. ++ +- ..+|+.+.+. +..||+|.++-=|.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPFH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccchh
Confidence 359999999999999998863321 3666664 4555555332 22 11 2234444433 39999999864332
Q ss_pred hhhh-cCCCcccchhhccccccCcceEE--EecChhHHHHHHHhh
Q 007128 532 DIEK-RGCSGEDLLLEMDRILRPTGFVI--IRDKQSVVDFVKKYL 573 (617)
Q Consensus 532 ~~~~-~~c~~~~~l~Em~RiLrPgG~~i--i~~~~~~~~~~~~~~ 573 (617)
.... .......++.+-.++|||||.++ +.........++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f 154 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELF 154 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhc
Confidence 1110 00124678999999999999884 333333333344433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2.8e-05 Score=79.68 Aligned_cols=97 Identities=26% Similarity=0.223 Sum_probs=69.1
Q ss_pred eeEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
+..+||+|||.|-.+..=..-.+.+.|++...+. .++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~-----~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLG-----GAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhcc-----ccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4679999999996654332224667777664433 33333332 46678999999999999999988776666543
Q ss_pred c--ceEEEEecccccCCceeeecCh
Q 007128 295 D--GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 295 ~--~~~L~el~RvLrPGG~lvis~p 317 (617)
. ..+++|+.|+|||||...+..-
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 2 3599999999999999777543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2.8e-05 Score=79.40 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=81.2
Q ss_pred HHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccc
Q 007128 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGT 269 (617)
Q Consensus 197 ~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~ 269 (617)
.|...+.+ .+| .+|||.|.|+|+++..|+.. .|+..|+.......|+.++. ..++ ++.+...|+
T Consensus 31 ~I~~~l~i------~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 31 YILMRLDI------RPG--SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHTT--------TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-G
T ss_pred HHHHHcCC------CCC--CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecce
Confidence 45555555 334 79999999999999999864 47788887766666654433 3454 367777787
Q ss_pred cccCCC---CCccccccccccccccccccceEEEEecccc-cCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 270 KRLPYP---SRSFELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 270 ~~lpf~---~~sFDlV~~s~~l~h~~~~~~~~L~el~RvL-rPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
..-.|. ++.||.|+ +...+ +..++..+.++| ||||++++-.|... . -......+++.||..+
T Consensus 102 ~~~g~~~~~~~~~Davf-----LDlp~-Pw~~i~~~~~~L~~~gG~i~~fsP~ie----Q----v~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVF-----LDLPD-PWEAIPHAKRALKKPGGRICCFSPCIE----Q----VQKTVEALREHGFTDI 167 (247)
T ss_dssp GCG--STT-TTSEEEEE-----EESSS-GGGGHHHHHHHE-EEEEEEEEEESSHH----H----HHHHHHHHHHTTEEEE
T ss_pred ecccccccccCcccEEE-----EeCCC-HHHHHHHHHHHHhcCCceEEEECCCHH----H----HHHHHHHHHHCCCeee
Confidence 655553 35799987 33333 367899999999 99999998666552 1 1344555666788655
Q ss_pred h
Q 007128 346 A 346 (617)
Q Consensus 346 ~ 346 (617)
.
T Consensus 168 ~ 168 (247)
T PF08704_consen 168 E 168 (247)
T ss_dssp E
T ss_pred E
Confidence 3
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.46 E-value=1.6e-05 Score=81.95 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred ceeEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHh---------------------------C-----
Q 007128 214 RLRTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALER---------------------------G----- 259 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~r---------------------------g----- 259 (617)
...+||-=|||.|.++..++.++ +.|.++|--|+-... +.... .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34689999999999999998874 566666665542221 11110 0
Q ss_pred ----------CCcccccccccccCCCC---CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHH-
Q 007128 260 ----------IPAYLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE- 325 (617)
Q Consensus 260 ----------~~~~~~~~d~~~lpf~~---~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~- 325 (617)
.+.....+|+..+..++ ++||+|++.+ ++.-..+.-.+|..|.++|||||+++=.+|-.|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 01112233443333333 6899998764 24444444568999999999999998888877765553
Q ss_pred ------HHHHHHHHHHHHHHhhhhhhhcc
Q 007128 326 ------DLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 326 ------~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
..-.|+++..+++..||+.+..+
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 33447999999999999876543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.45 E-value=6e-06 Score=83.88 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred ccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeeccccc-chhhhhhhcccCCcchhhhhhhhh
Q 007128 453 KIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIG-SIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 453 ~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~-~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
...+.+.+.|+|+|+|.|.++.+++++ ++ .++-.|.|..++.+.+..-+. .-+|. |.++|. +|++...++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHV 167 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC---cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehh
Confidence 356788889999999999999999865 34 334445555555544421111 11222 244667 999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCc--ceEEEecCh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPT--GFVIIRDKQ 563 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPg--G~~ii~~~~ 563 (617)
+++.... +...+|..+.+.|+|| |.|+|-|..
T Consensus 168 Lh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDE--DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9866544 3468999999999999 999999886
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.8e-06 Score=81.02 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC--cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP--RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p--~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.+++.|++...-...|+.+|. +++++.+.++ |+ ..+.-.+.+ +..++ ..||+|++...+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 47999999999999888764210013444553 4666555443 22 111111111 11222 7899999865444
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+..++.+.|||||.+++-.
T Consensus 157 ----------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 157 ----------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ----------cchHHHHHhhCCCcEEEEEE
Confidence 33456677999999998854
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=2.1e-05 Score=69.86 Aligned_cols=100 Identities=29% Similarity=0.386 Sum_probs=66.9
Q ss_pred EEeeccccccc--ccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccc--cCCCC-Ccccccccccccc
Q 007128 218 VLDVGCGVASF--GAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKR--LPYPS-RSFELAHCSRCRI 289 (617)
Q Consensus 218 VLDVGCG~G~~--~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~--lpf~~-~sFDlV~~s~~l~ 289 (617)
++|+|||+|.. ...+... .++++|+++.++..+...... .... +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 466778877666552221111 2222 3555566555 78877 489999 666656
Q ss_pred ccccccceEEEEecccccCCceeeecChhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5554 45789999999999999999765543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=2.1e-05 Score=92.07 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=77.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+|||+|+|+.+++..|.. .|+.+|. +.+++.|.+. |+ .+.+-+|.+ .+.++||+|.+
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~---~~~~~fDlIil 614 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK---EAREQFDLIFI 614 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH---HcCCCcCEEEE
Confidence 47999999999999999987653 3666664 4555555443 22 122222222 23578999986
Q ss_pred h-----------hhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccccc
Q 007128 527 W-----------TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 527 ~-----------~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
+ .++.... +...++....++|+|||.+++......+......+...+++. ++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~----~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~--~~i~ 679 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQR----DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKA--EEIT 679 (702)
T ss_pred CCCCCCCCCccchhhhHHH----HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeE--EEEe
Confidence 4 2232222 345678888999999999998776665556677777778877 4543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.41 E-value=1.9e-05 Score=78.38 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=78.6
Q ss_pred chhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEe-----ecccccchhhh-hhhcccCCcchhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIY-----DRGLIGSIHNW-CEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~-----~rgl~~~~~~~-~e~~~~~p~tfDlvh~~~~~ 530 (617)
.....||.|||.|..+..|.-.-. .|-=|.|+ +..++.|. +.+-++.+... -+.|..-+..||+|.+.=++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 455699999999999998765433 33234443 34444444 22223433321 13443223799999988888
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhccccccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~~~~ 584 (617)
.||.+. ++...|.--..-|+|+|.++|.+..+ ..+.++++.++.+++.++..
T Consensus 133 ghLTD~--dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDE--DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HH--HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHH--HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 888755 77889999999999999999999876 46679999999999987433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=2.1e-05 Score=81.55 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=72.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe----eccccc--chhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY----DRGLIG--SIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~----~rgl~~--~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|-++..|+++.- ...|+-+|. ...++.+. ..++-+ ++++ --++.-...||+|.|+==|+.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998642 113444442 12222221 112222 2221 1122233699999876666521
Q ss_pred hhcCC---CcccchhhccccccCcceEEEec--ChhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 534 EKRGC---SGEDLLLEMDRILRPTGFVIIRD--KQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 534 ~~~~c---~~~~~l~Em~RiLrPgG~~ii~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
. .- --..++.+-.+-|++||.++|=- ......+|+++.. ++ +++. ..+.-+||-++|.
T Consensus 238 ~--~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v--~~la------~~~gf~Vl~a~k~ 300 (300)
T COG2813 238 K--AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NV--EVLA------KNGGFKVLRAKKA 300 (300)
T ss_pred c--chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CE--EEEE------eCCCEEEEEEecC
Confidence 1 00 01267888899999999885543 3445556666655 22 3332 1456788888773
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=2.6e-05 Score=78.01 Aligned_cols=119 Identities=15% Similarity=0.254 Sum_probs=81.4
Q ss_pred hHHHhhhcchhhHhhhcCCce-EEEEeecCC-CCCceEEEeeccc------ccchhhhhhhcccCC---cchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDV-WVMSVVPED-GPNTLKLIYDRGL------IGSIHNWCEAYSTYP---RTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~-~~~~l~~~~~rgl------~~~~~~~~e~~~~~p---~tfDlvh~~~~ 529 (617)
.||.+|||.|.-.--|.+..- --..|-..| +++.+++..++-- -+.++|.+.+-...| .++|+|.+--|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999987766664311 012344555 3555444433321 455666654432232 99999999889
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh------------------------------HHHHHHHhhhhcccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------------VVDFVKKYLRALNWE 579 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------------~~~~~~~~~~~~~w~ 579 (617)
|+-++ .-.+..+|..+.|+|||||.+++||--. ..+++.++....+..
T Consensus 154 LSAi~--pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIH--PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccC--hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 98664 3367799999999999999999998754 356777787777777
Q ss_pred cc
Q 007128 580 AV 581 (617)
Q Consensus 580 ~~ 581 (617)
.+
T Consensus 232 ~~ 233 (264)
T KOG2361|consen 232 EV 233 (264)
T ss_pred hh
Confidence 64
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=4.4e-05 Score=80.69 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred eeEEEeeccccccccccc--ccchhhhhccCCCccchhhhHHHHHhCCCcccc-cccccccCCCCCcccccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYL--LSSDVITMSLAPNDVHQNQIQFALERGIPAYLG-VLGTKRLPYPSRSFELAHCSRC---- 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L--~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~-~~d~~~lpf~~~sFDlV~~s~~---- 287 (617)
+..|||==||||+++... ....++|.|++..|+..+..++..-+--+..+. ..|+..+|+++++||.|++---
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 368999999999887554 445688999988888777654443321223233 3499999999999999987421
Q ss_pred -ccccc---cccceEEEEecccccCCceeeecCh
Q 007128 288 -RIDWL---QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 -l~h~~---~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
-..-. .-...+|..+.++|++||++++..|
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 00000 1113578889999999999999877
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=2.4e-05 Score=81.68 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=61.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------cc---------ccchhhhhhhcccCCc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------GL---------IGSIHNWCEAYSTYPR 519 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------gl---------~~~~~~~~e~~~~~p~ 519 (617)
.+-++|||+|||.|+++..++++ ++ .+|+.++. +.+++.+.+. |+ ++....+ +..-++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCC
Confidence 45678999999999999999876 44 25666664 5666555432 11 1211111 122247
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+||+|.++..-+......---...+.++.|.|+|||.+++..
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 999998754322100000001456789999999999999864
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.31 E-value=5e-05 Score=82.46 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=65.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC-CCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY-PSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++ +.+...++ ++.+..+|+..... ..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 58999999999999988865 5899999998887776 44444555 56777778755321 1246999986522 1
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..-...++..+ ..++|++.++++..
T Consensus 311 ~G~~~~~l~~l-~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 RGIGKELCDYL-SQMAPKFILYSSCN 335 (374)
T ss_pred CCCcHHHHHHH-HhcCCCeEEEEEeC
Confidence 11011233333 24789999999853
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=7.2e-05 Score=74.15 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=75.6
Q ss_pred eEEEeeccccccccccccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC---CCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP---SRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~---~~sFDlV~~s~~l~h~ 291 (617)
-++|||||=+......-.. -.|+.||+.+... .+...|+...|.| ++.||+|+|+.+ +.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSLV-LNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEEE-Eee
Confidence 6899999875543332211 1477777766221 1334566666653 679999999987 456
Q ss_pred cccc---ceEEEEecccccCCce-----eeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 292 LQRD---GILLLELDRLLRPGGY-----FAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 292 ~~~~---~~~L~el~RvLrPGG~-----lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
.+++ ..+++.+.+.|+|+|. |+++.|..--..... ..-+.+..+++.+||..+..+
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy-~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY-MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc-cCHHHHHHHHHhCCcEEEEEE
Confidence 5544 3599999999999999 888876653211100 001568889999999776543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=3.7e-05 Score=80.94 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=66.4
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRC-- 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~-- 287 (617)
.++|||||||+|.++..-+++ .|+++|.|... ..+ .+.+..++.. +++..+.++++.+|....|+|++-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a-~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFA-RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHH-HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 368999999999888777665 58888887633 333 3566666654 45556666666666779999997542
Q ss_pred -ccccccccceEEEEecccccCCceeeec
Q 007128 288 -RIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 288 -l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+++ ..-...+|-.=.+.|+|||.++=+
T Consensus 139 ~Ll~-EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 139 FLLY-ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHH-hhhhhhhhhhhhhccCCCceEccc
Confidence 221 112234666678899999988743
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.29 E-value=4.8e-05 Score=78.91 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=60.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-----c-c----ccchh-hhhhhcccCCcchhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-----G-L----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-----g-l----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
.+-++||++|||.|+++..+++... +.+|+.+|. +++++.+.+. + + +-.++ |-.+-+...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3455899999999999988877641 234555553 4454444332 0 0 00111 1111122235899999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.++...........-....+..+.++|+|||.+++...
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 87654321110000024677899999999999998643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.28 E-value=4.9e-05 Score=78.86 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc-cC-C----CCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR-LP-Y----PSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~-lp-f----~~~sFDlV 282 (617)
++|||||+|+|..+..++.. .|+++|.++.....|+. ...+.|+. +.+..+|+.. |+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~-n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKR-YYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 68999999999988888753 48899999877666663 44445553 5666666533 22 1 13689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.-. .......++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8542 2223345778888999999999985
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=4.2e-05 Score=76.54 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=68.0
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--ccccc-ccccc-cC-CCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGV-LGTKR-LP-YPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~-~d~~~-lp-f~~~sFDlV~~s 285 (617)
++||+||.+.|..+..|+.. .++++|+++.....|+..+ ++.|+. +.... +|..+ +. ...++||+|+.-
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 68999999999888888753 4899999998887777443 344543 33333 34322 22 456899999843
Q ss_pred ccccccccccceEEEEecccccCCceeeec
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.-.+...++..+.++|||||.+++.
T Consensus 140 ----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 140 ----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 23344467899999999999999985
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.26 E-value=3e-05 Score=77.16 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=65.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cC-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LP-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lp-----f~~~sFDlV 282 (617)
++||+|||++|..+..|++. .|+++|+++.....|+ +...+.|. .+.+..+|+.. ++ ...++||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999988888753 5899999887666655 34444454 35566666533 22 123589999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.-.. ......++..+.++|+|||.+++..
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 85432 2223446777889999999999863
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00011 Score=74.32 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK 496 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~ 496 (617)
.+|||+|||+|+|+..|+++|+ -.|..+|. ++|+.
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~ 112 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLA 112 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHH
Confidence 4699999999999999999865 24666664 34543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=6e-06 Score=73.70 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=58.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-------ccchhhhhhhcccCCcchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-------IGSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-------~~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
+|||+|||+|.|+.++++.+ ..++..+|. +..++.+..+ ++ .+.+.+..+.++. +.||+|.++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 58999999999999999876 225666653 3333333222 11 2333333222222 9999999877
Q ss_pred hhhhhhh----cCCCcccchhhccccccCcceEEEec
Q 007128 529 VFSDIEK----RGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 ~~~~~~~----~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
-|..... ..-....++.++.|+|||||.+++--
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7652210 11123577999999999999998753
|
... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00018 Score=69.74 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred eeEEEeecccccccccc--ccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAY--LLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~--L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+++|+|+|||||.++.. ++. ..|+++|+++..++.+. +.+.+.+..+.+.++|+.+.. ..||.|+.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEEC
Confidence 36899999999976544 333 36999999998877776 555556667888888887764 458877654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=2.5e-05 Score=77.85 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=55.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC--cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++... .|..+|. +++++.+.++ |+ +-..+. ..+..++ ++||+|.++..+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccCc
Confidence 4699999999999998887643 3555553 4555544443 22 111111 0112232 789999986655
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+ +..++.+.|+|||.+++.-.
T Consensus 155 ~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh----------hhHHHHHhcCCCcEEEEEEc
Confidence 53 34567799999999988644
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=4.7e-05 Score=85.78 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=72.1
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc--CCCCCccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL--PYPSRSFELAHCSR 286 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l--pf~~~sFDlV~~s~ 286 (617)
....+||||||.|.++..++.. +++|+|+...-+..+. +.+.+.++ ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3468999999999999999875 6899999886666555 33444455 444555554322 26788999998765
Q ss_pred ccccccccc--------ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
. -+|.... ..++..+.++|+|||.+.+.+
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4 3453321 237889999999999999975
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=3.4e-05 Score=80.57 Aligned_cols=137 Identities=8% Similarity=0.085 Sum_probs=79.3
Q ss_pred chhhHHHhhhcchhhHhhhcC----CceEEEEeecCCCCCceEEEee-----ccc---cc-chhhhhhhcccCCcchhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKE----KDVWVMSVVPEDGPNTLKLIYD-----RGL---IG-SIHNWCEAYSTYPRTYDLL 524 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~~~~l~~~~~-----rgl---~~-~~~~~~e~~~~~p~tfDlv 524 (617)
.-++|+|||||.|++++.+.. .+..+.++.-. +.+++.|.+ .|+ +- ..+|..+. ......||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d--~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID--PSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEE
Confidence 557899999999988766543 23333344332 333332221 233 11 11122221 1112789999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHH---H-HHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVD---F-VKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~---~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
.+. ++.+.. .-+...+|..+.|.|||||+++++...-... . +..-..+ +|+.+..++ ++. ..-.-++
T Consensus 200 F~~-ALi~~d--k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~-gf~~~~~~~-P~~----~v~Nsvi 270 (296)
T PLN03075 200 FLA-ALVGMD--KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR-GFEVLSVFH-PTD----EVINSVI 270 (296)
T ss_pred EEe-cccccc--cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC-CeEEEEEEC-CCC----CceeeEE
Confidence 998 766542 2377899999999999999999997422111 1 1111111 999974444 222 3456799
Q ss_pred EEEecc
Q 007128 601 IVQKKI 606 (617)
Q Consensus 601 ~~~K~~ 606 (617)
+++|.-
T Consensus 271 ~~r~~~ 276 (296)
T PLN03075 271 IARKPG 276 (296)
T ss_pred EEEeec
Confidence 999965
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00017 Score=75.82 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=58.2
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-CCCcccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~ 269 (617)
...+.+.+.+.. . +..+|||||||+|.++..|++. .|+++|+++.++..++..++... ..++.+..+|+
T Consensus 23 ~i~~~Iv~~~~~------~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 23 LVLDKIVEKAAI------K--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred HHHHHHHHhcCC------C--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 344555555544 2 2368999999999999999875 58999999988777764443322 23567788888
Q ss_pred cccCCCCCcccccccc
Q 007128 270 KRLPYPSRSFELAHCS 285 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s 285 (617)
...+++ .||+|+++
T Consensus 95 l~~~~~--~~d~VvaN 108 (294)
T PTZ00338 95 LKTEFP--YFDVCVAN 108 (294)
T ss_pred hhhccc--ccCEEEec
Confidence 776654 68988865
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.16 E-value=3.2e-05 Score=74.92 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=56.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhC----CCcccccccccc-c--C-CCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERG----IPAYLGVLGTKR-L--P-YPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg----~~~~~~~~d~~~-l--p-f~~~sFDlV 282 (617)
+.+|||+|||+|..+..++.. .|+..|..+ -+...+ ..+..++ ..+.+...+-.. . . ...++||+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 368999999999666655544 588888877 333332 3333322 223333333211 1 1 234689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+++.+++. ....+.++.-+.++|+|+|.++++.+..
T Consensus 124 lasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99998653 3444568888999999999988765443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=7.6e-05 Score=80.31 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=74.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..++|+|||.|....+++.. ++++++.++..+..+...... .++. ..+...+....||+++.||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~- 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC- 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecc-
Confidence 47999999999888777653 688888888766665533322 2222 3346678888999999999999888754
Q ss_pred cccccceEEEEecccccCCceeeec
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.++...++.|++|+++|||+++..
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 4555578999999999999999984
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00024 Score=72.96 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccc---ccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE---LAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFD---lV~~s 285 (617)
..+|||+|||+|.++..|+++ .++++|+++.++..++..... ..++.+..+|+..++++ +|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 368999999999999999875 588999988776655432211 23567778888887765 466 55544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00016 Score=73.55 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=70.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
..+.+.+.+.+... .--....+||+|||+|.++..|+.. .|+++|.|+..+..+. +.+...++...+.+.
T Consensus 131 EE~V~~Vid~~~~~-----~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-----EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhh-----hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEE
Confidence 45666666655541 1112247999999999877766543 6899999887776665 344444333222221
Q ss_pred ------c-ccccCCCCCccccccccccccccccc------------c-------------ceEEEEecccccCCceeeec
Q 007128 268 ------G-TKRLPYPSRSFELAHCSRCRIDWLQR------------D-------------GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 ------d-~~~lpf~~~sFDlV~~s~~l~h~~~~------------~-------------~~~L~el~RvLrPGG~lvis 315 (617)
| ....+..++.+|+++|+--.+...+. . ..++.-+.|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 1 12334567899999987321111000 0 01344567889999999986
Q ss_pred Ch
Q 007128 316 SP 317 (617)
Q Consensus 316 ~p 317 (617)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 54
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.06 E-value=5.3e-05 Score=79.99 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec------cc--------ccchhhhhhhcccC-Ccc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR------GL--------IGSIHNWCEAYSTY-PRT 520 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r------gl--------~~~~~~~~e~~~~~-p~t 520 (617)
.+-++|||+|||.|+++..+++.+ .+..|+.++. +.+++.+.+. ++ ++....+- ... ++.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l---~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL---KNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH---hhccCCC
Confidence 456789999999999999998863 1234444442 2333333221 11 22221222 223 378
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
||+|.++...+......---...+..+.|.|+|||.+++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99998754332110000001357889999999999998743
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00024 Score=76.13 Aligned_cols=145 Identities=10% Similarity=0.059 Sum_probs=82.3
Q ss_pred ccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee--------cc-c--------ccchhhhhhhcccC
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD--------RG-L--------IGSIHNWCEAYSTY 517 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~--------rg-l--------~~~~~~~~e~~~~~ 517 (617)
..+-++||++|||.|+.+..+.+.+. +.+|+.+|. +.++++|.+ ++ + ++..-.+ +..-
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~ 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSP 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhc
Confidence 35567899999999999888887641 236677774 677777664 11 1 1222222 2223
Q ss_pred Ccchhhhhhhhhhhhhh-hcCCCcccchhhccccccCcceEEEecChh-----HHHHHHHhhhhcccccccccccCCCCC
Q 007128 518 PRTYDLLHAWTVFSDIE-KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~-~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
++.||+|.++...+... ....--...+..+.+.|+|||.+++..... ....+.+.++.....+. .... .-|
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~-~y~t--~vP 300 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK-SYHT--IVP 300 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE-EEEE--ecC
Confidence 47899998763211000 000011357889999999999998875532 22234555555555542 1111 111
Q ss_pred CCCCCeEEEEEEeccc
Q 007128 592 DKDGDEVVFIVQKKIW 607 (617)
Q Consensus 592 ~~~~~~~~l~~~K~~w 607 (617)
--...-.+++|.|.-.
T Consensus 301 syg~~WgF~~as~~~~ 316 (374)
T PRK01581 301 SFGTDWGFHIAANSAY 316 (374)
T ss_pred CCCCceEEEEEeCCcc
Confidence 1122367888877544
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.001 Score=66.51 Aligned_cols=116 Identities=27% Similarity=0.359 Sum_probs=77.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEe----eccc----ccchh-hhhhhcccCC-cchhhh-hh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIY----DRGL----IGSIH-NWCEAYSTYP-RTYDLL-HA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~----~rgl----~~~~~-~~~e~~~~~p-~tfDlv-h~ 526 (617)
=.+|||.=.|.|-+|..-+++|. .|.+|.- .+|-|+.|. .|+| |-.++ |..+-..+|+ .+||.| |-
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk--dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEK--DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEee--CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 34699999999999999999988 6655432 256666663 3455 23333 3345566676 889976 42
Q ss_pred hhhhh---hhhhcCCCcccchhhccccccCcceEEEe--cCh------hHHHHHHHhhhhcccccc
Q 007128 527 WTVFS---DIEKRGCSGEDLLLEMDRILRPTGFVIIR--DKQ------SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 527 ~~~~~---~~~~~~c~~~~~l~Em~RiLrPgG~~ii~--~~~------~~~~~~~~~~~~~~w~~~ 581 (617)
---|+ +|+ -+..-.||.|||||||.++=- .+- +....+.+-+.+.++.++
T Consensus 213 PPRfS~AgeLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 213 PPRFSLAGELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred CCccchhhhHh-----HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 22222 122 146789999999999998532 222 255668888888999876
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00019 Score=76.71 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=64.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
.++||.||+|.|..+.++++. .|+.+|+++..++.++..+... ....+.+...|... +....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 468999999999999887764 4788888887766665333211 12345666666544 23345789999965
Q ss_pred ccccccccc------cceEEE-EecccccCCceeeec
Q 007128 286 RCRIDWLQR------DGILLL-ELDRLLRPGGYFAYS 315 (617)
Q Consensus 286 ~~l~h~~~~------~~~~L~-el~RvLrPGG~lvis 315 (617)
.. -++... ...+++ .+.+.|+|||++++-
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 21 111100 013555 788999999999874
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00011 Score=81.52 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=59.8
Q ss_pred eeEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhC--CCcccccccccccCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERG--IPAYLGVLGTKRLPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~~d~~~lpf~~~sFDlV~~ 284 (617)
...|||||||+|.+....++ ..|++++-++......+ +.....+ -.+++..+|++.+..+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 36799999999977643322 25888888775443333 2223333 35788888999888774 8999996
Q ss_pred cccccccccc--cceEEEEecccccCCceeeec
Q 007128 285 SRCRIDWLQR--DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 285 s~~l~h~~~~--~~~~L~el~RvLrPGG~lvis 315 (617)
=..- .+..+ ....|....|.|||||.++=+
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 3211 11111 123677889999999988743
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00013 Score=80.74 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=65.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccch-hhhhhhcccCC-cchhhhhh----h
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSI-HNWCEAYSTYP-RTYDLLHA----W 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~-~~~~e~~~~~p-~tfDlvh~----~ 527 (617)
..|||+|||+|+++..+++..-- ..|+.+|. +.+++.+.++ |+ +..+ +|..+....++ .+||.|.+ +
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 36999999999999999875311 25667774 5666555433 22 1111 12111111123 78999983 2
Q ss_pred h--hhhhhh-----hc-------CCCcccchhhccccccCcceEEEecC----hhHHHHHHHhhhh
Q 007128 528 T--VFSDIE-----KR-------GCSGEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRA 575 (617)
Q Consensus 528 ~--~~~~~~-----~~-------~c~~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~ 575 (617)
. ++.+-. .+ ......+|.+..++|||||.++++.- .+-.+.+...+++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 2 111000 00 00123689999999999999998763 3333445555554
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=6.4e-05 Score=77.55 Aligned_cols=118 Identities=10% Similarity=0.083 Sum_probs=73.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC--cchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP--RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p--~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..++.+.. ..+|+.+|. +.+++.+.++- ..+.-.+.++..++ ++||+|.++--|.++...
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 3699999999999988876420 025677774 67777665541 11111223333332 789999987777643200
Q ss_pred ------CC----------CcccchhhccccccCcceEEEecChh-------HHHHHHHhhhhccccc
Q 007128 537 ------GC----------SGEDLLLEMDRILRPTGFVIIRDKQS-------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 537 ------~c----------~~~~~l~Em~RiLrPgG~~ii~~~~~-------~~~~~~~~~~~~~w~~ 580 (617)
+. .+...+....++|+|+|.+++.-.-. .-++.+++++.-+...
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 11 13567788899999999887763322 2346777777665543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00011 Score=81.64 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=65.2
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC-C-cchhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY-P-RTYDLLHAW-- 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~-p-~tfDlvh~~-- 527 (617)
..|||+|||+|+++..|++. +. .|+.+|. +.+++.+.++ |+ ..+...+.+...+ + .+||+|.++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 46999999999998877753 23 4666674 5666555443 43 1122222222222 2 789999742
Q ss_pred ----hhhhhhhh--cC---C-------CcccchhhccccccCcceEEEecCh----hHHHHHHHhhhh
Q 007128 528 ----TVFSDIEK--RG---C-------SGEDLLLEMDRILRPTGFVIIRDKQ----SVVDFVKKYLRA 575 (617)
Q Consensus 528 ----~~~~~~~~--~~---c-------~~~~~l~Em~RiLrPgG~~ii~~~~----~~~~~~~~~~~~ 575 (617)
+++.+-.. .. . ....+|.++.++|||||.+++..-. +-...++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 22211000 00 0 1125899999999999999997732 223346666664
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00012 Score=81.27 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=65.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhh---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWT--- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~--- 528 (617)
.+|||+|||+|+++..+++.-.-...|+.+|. +++++.+.++ |+ +-.++ |..+....++++||+|.++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 46999999999999998874100114666664 4555544332 33 11111 22111122347899997532
Q ss_pred ---hhhhhhh-----cCCC-------cccchhhccccccCcceEEEecCh----hHHHHHHHhhhhc-cccc
Q 007128 529 ---VFSDIEK-----RGCS-------GEDLLLEMDRILRPTGFVIIRDKQ----SVVDFVKKYLRAL-NWEA 580 (617)
Q Consensus 529 ---~~~~~~~-----~~c~-------~~~~l~Em~RiLrPgG~~ii~~~~----~~~~~~~~~~~~~-~w~~ 580 (617)
++.+-.. +..+ ...+|.+..|+|||||.++++.-. +....++.+++.- .|+.
T Consensus 332 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 332 GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 2211000 0001 135799999999999999965322 2233455666653 3554
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=9.9e-05 Score=81.73 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=68.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc---c----cCCcchhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY---S----TYPRTYDLLHA- 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~---~----~~p~tfDlvh~- 526 (617)
..|||+|||+|+++..|++.---...|+.+|. +.+++.+.++ |+ ..+...+.+. + ..+++||.|.+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEEEEe
Confidence 36999999999999998864110114666674 5666555433 32 1222222222 2 12378999874
Q ss_pred ---h--hhhhhhhh--cC---CC-------cccchhhccccccCcceEEEecC----hhHHHHHHHhhhhc-cccc
Q 007128 527 ---W--TVFSDIEK--RG---CS-------GEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRAL-NWEA 580 (617)
Q Consensus 527 ---~--~~~~~~~~--~~---c~-------~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~~-~w~~ 580 (617)
+ +++.+-.. ++ .+ ...+|.++.++|||||.++++.- .+..+.++..+++- .|+.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 2 23321110 00 00 24789999999999999987642 23444566666654 3543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00031 Score=72.64 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=65.8
Q ss_pred ceeEEEeeccccc----ccccccccc---------hhhhhccCCCccchhhhHH----HHHhCCC---------------
Q 007128 214 RLRTVLDVGCGVA----SFGAYLLSS---------DVITMSLAPNDVHQNQIQF----ALERGIP--------------- 261 (617)
Q Consensus 214 ~~~~VLDVGCG~G----~~~~~L~~~---------~V~gvDis~~dl~~a~~~~----a~~rg~~--------------- 261 (617)
..-+|+-.||++| +++..|.+. .|+|+|++...+..|+.-. ...++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3578999999999 444444332 4778888777666554211 1111221
Q ss_pred ----------cccccccccccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeec
Q 007128 262 ----------AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 262 ----------~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
+.|...|...-++..+.||+|+|-++++.+..+. .+++..++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1222333333332446799999999988765543 35999999999999999995
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0001 Score=81.39 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=58.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh---ccc--CCcchhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA---YST--YPRTYDLLHAW-- 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~---~~~--~p~tfDlvh~~-- 527 (617)
..|||||||+|+++..+++.-- -..|+.+|. +++++.+.++ |+-..++.-+.+ .+. -+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 4799999999999999886411 124666674 5665554333 331011001111 111 12789999742
Q ss_pred ----hhhhhhhh--cCC----------CcccchhhccccccCcceEEEec
Q 007128 528 ----TVFSDIEK--RGC----------SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ----~~~~~~~~--~~c----------~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+++.+.+. .+- .-..+|.+..|+|||||.++++.
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 34432110 000 01469999999999999999873
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00061 Score=67.01 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=61.5
Q ss_pred eeEEEeeccccccccccccc----ch--hhhhccCCCccchhhhHHHHHh----------CCCcccccccccccCCCCCc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SD--VITMSLAPNDVHQNQIQFALER----------GIPAYLGVLGTKRLPYPSRS 278 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~--V~gvDis~~dl~~a~~~~a~~r----------g~~~~~~~~d~~~lpf~~~s 278 (617)
+.+.||+|.|+|.++..++. .+ +.|+|..+.-++.+....-..- .-...+.++|....--+.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 36899999999988776653 22 3677766644433331111100 11244557777776667789
Q ss_pred cccccccccccccccccceEEEEecccccCCceeeec
Q 007128 279 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 279 FDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
||.|||... .....+++...|+|||.+++-
T Consensus 163 YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVGAA-------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEccC-------ccccHHHHHHhhccCCeEEEe
Confidence 999998743 135677788899999999983
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0004 Score=71.28 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=44.8
Q ss_pred cccccccccccccccccc---ceEEEEecccccCCceeeecCh-------------hhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 278 SFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSP-------------EAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p-------------~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
.||+|++.+|+.-...+. ..+++++.++|||||+|++..- +.....+ +.+++.++.+|
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~e------e~v~~al~~aG 231 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNE------EFVREALEEAG 231 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-H------HHHHHHHHHTT
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCH------HHHHHHHHHcC
Confidence 599999999976555543 3589999999999999998521 1111221 56788889999
Q ss_pred hhhhhc
Q 007128 342 WRIAAK 347 (617)
Q Consensus 342 f~~v~~ 347 (617)
|.+...
T Consensus 232 ~~i~~~ 237 (256)
T PF01234_consen 232 FDIEDL 237 (256)
T ss_dssp EEEEEE
T ss_pred CEEEec
Confidence 966543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00024 Score=72.66 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=63.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cCC------CCCcccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LPY------PSRSFEL 281 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lpf------~~~sFDl 281 (617)
++||+||+++|..+..|+.. .++++|..+.....|+. ...+.|+ .+.+..+++.. ++- ..++||+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~-~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLP-VIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 58999999999887777643 58899998866655553 3333443 35566665433 221 1368999
Q ss_pred ccccccccccccccceEEEEecccccCCceeeec
Q 007128 282 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 282 V~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|+.-. .......++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 98542 2222345667778999999999885
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00021 Score=73.96 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=56.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCCcchhhhhhhh-----
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYPRTYDLLHAWT----- 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p~tfDlvh~~~----- 528 (617)
.|||+|||+|+++..|++.--....|+.+|. +.+++.+.++ |+ +-.++.-...++.....||.|.++-
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~ 153 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGE 153 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCC
Confidence 5999999999999888763100014666674 4555544333 33 1122211122332235699987421
Q ss_pred -hhhhhhhc--CC----------CcccchhhccccccCcceEEEec
Q 007128 529 -VFSDIEKR--GC----------SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 529 -~~~~~~~~--~c----------~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.+-+.. .- .-.++|.+..++|||||+++.+.
T Consensus 154 G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 154 GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12110000 00 11358999999999999998874
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00031 Score=79.62 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=70.8
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc---------c----ccchh-hhhhhcccCCcchh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG---------L----IGSIH-NWCEAYSTYPRTYD 522 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg---------l----~~~~~-~~~e~~~~~p~tfD 522 (617)
+-++|||+|||.|..+..+++++. +..|+.+|. +++++.+.+.- + +-.++ |-.+-+...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999998887642 124555563 56666665520 0 11111 11111223458999
Q ss_pred hhhhhhhhhhhhh-cCCCcccchhhccccccCcceEEEecC-----hhHHHHHHHhhhhcccc
Q 007128 523 LLHAWTVFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDK-----QSVVDFVKKYLRALNWE 579 (617)
Q Consensus 523 lvh~~~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~-----~~~~~~~~~~~~~~~w~ 579 (617)
+|.++.-.+.... .+---++.+.++.|.|||||.+++... .....++.+.+++.++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9988633221100 000012577899999999999998543 33445566666666553
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0002 Score=77.96 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||++||+|.++..++.. .|+++|+++..+..++ +.+..+++. ..+...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 57999999999999888643 4899999987777666 344444443 4466677655432145799998542
Q ss_pred cccccceEEEEecccccCCceeeecC
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+ ..+..++..+.+.+++||++.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 222346677678899999999974
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.00037 Score=64.64 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred eeEEEeecccccccc--ccccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFG--AYLLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~--~~L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+++|+|||.|-+. ..+.+ ..|+|+|+.+..++... +.+.+..+++.+.++|+.++-+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 367999999999655 33333 36999999998877666 6777777888889999999888889999998553
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00053 Score=67.81 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=85.9
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEE----Eeeccc----ccchhh-----hh--hhcccCCcchhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKL----IYDRGL----IGSIHN-----WC--EAYSTYPRTYDL 523 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~----~~~rgl----~~~~~~-----~~--e~~~~~p~tfDl 523 (617)
.||.||||+|.-+++++.. +- +.--|.|- ++.+.- +.+.|+ .....| |. .+-+.++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999999888864 21 12445553 222111 223333 111112 21 112224589999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------HHHHHHHhhhhc
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------------------VVDFVKKYLRAL 576 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------------------~~~~~~~~~~~~ 576 (617)
|.|..+++ +....| .+.++.+..++|+|||.|++=.+-. .++.|..++.+-
T Consensus 106 i~~~N~lH-I~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 106 IFCINMLH-ISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeehhHHH-hcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 99999888 432333 4789999999999999999877653 466799999998
Q ss_pred ccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 577 NWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 577 ~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+++.. .+++ + -...++||-+|
T Consensus 184 GL~l~-~~~~----M--PANN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELE-EDID----M--PANNLLLVFRK 204 (204)
T ss_pred CCccC-cccc----c--CCCCeEEEEeC
Confidence 88874 3433 2 23567888776
|
The function of this family is unknown. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00054 Score=67.08 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC-CCceEEEeec-cc--ccch
Q 007128 434 KDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-GL--IGSI 507 (617)
Q Consensus 434 ~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-gl--~~~~ 507 (617)
+..+.|.+++-+=...+. .+..... +|+|||+|-| |+--+++.....+.=|.++.. -+.|+.+..+ || +-++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhh-hhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 446788887765444433 2333332 5999999999 555555555553333444332 2333333333 55 4455
Q ss_pred hhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHH---hhhhccccc
Q 007128 508 HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKK---YLRALNWEA 580 (617)
Q Consensus 508 ~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~---~~~~~~w~~ 580 (617)
|.-.|. ..++..||+|.|-. ...+..++.-+.+.|+|||.+++---....+|+++ ..+.++++.
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA--------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA--------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES--------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred Eeeecc-cccCCCccEEEeeh--------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 555555 44679999998732 23456677778899999999988776665555554 444444444
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00054 Score=74.92 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+|||+|+|+.+.+..+. -.|+.+|. +.+++.|.+. |+ .+.+-++...+..-.++||+|.+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999877655443 14555553 4555444322 22 12222221111111258999986
Q ss_pred hhhh-h----hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 527 WTVF-S----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 527 ~~~~-~----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+-=+ . .+.....+..+++.-..++|+|||.++.+..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5111 0 0110111345566667799999999998543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0002 Score=70.72 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=66.5
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-C----CceEEEeecccccchhhhhhh----ccc-C-Ccchhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-P----NTLKLIYDRGLIGSIHNWCEA----YST-Y-PRTYDLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~----~~l~~~~~rgl~~~~~~~~e~----~~~-~-p~tfDlvh~~ 527 (617)
.+||+|||.|.|...+|.. +. |+++++. . ..+..+..+|+ .+++-.+.+ +.. + |+++|-||.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 5999999999999999864 44 5555553 2 33333444454 222211111 111 2 3888888742
Q ss_pred hhhhhh----hhcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhc--cccc
Q 007128 528 TVFSDI----EKRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRAL--NWEA 580 (617)
Q Consensus 528 ~~~~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~--~w~~ 580 (617)
.=-+.. .+.|---...|.+|.|+|+|||.|.+. |..+..+.+.+.+... .++.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEE
Confidence 111110 123333357899999999999999665 5555667777777764 5554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00016 Score=76.89 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=52.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc---CCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST---YPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~---~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.+++.|++.......|+.+|. +.+++.|.++ |+ ..++..+.+... ....||+|.+.....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECCchH
Confidence 36999999999999999864210012445553 4555554432 32 112211222111 126799998754443
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++ ...+.+.|||||.+++-.
T Consensus 161 ~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 EV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred Hh----------HHHHHHhcCCCCEEEEEe
Confidence 22 234568999999988854
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0018 Score=62.41 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=80.8
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..-+||||||+|..+..|++. -..++|+++...+... +.|+.++..+...+.|...- ...++.|+++.+.-..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl-~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL-ETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH-HHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 467999999999888888765 2567899986655443 56666666655555554322 1226777776542211
Q ss_pred --------------ccc--cc----cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhccC
Q 007128 290 --------------DWL--QR----DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRN 349 (617)
Q Consensus 290 --------------h~~--~~----~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~~ 349 (617)
.|. .+ ..+++..+..+|.|.|.+++..-..+.. +++-..++..||.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--------~ei~k~l~~~g~~------ 187 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--------KEILKILEKKGYG------ 187 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--------HHHHHHHhhcccc------
Confidence 121 11 1247778888999999999975443321 3455567777773
Q ss_pred ceEEEeccCCcc
Q 007128 350 QTVVWQKPLNND 361 (617)
Q Consensus 350 ~~~iw~k~~~~~ 361 (617)
....|++..+.+
T Consensus 188 ~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 188 VRIAMQRKAGGE 199 (209)
T ss_pred eeEEEEEecCCc
Confidence 344566555443
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00053 Score=66.02 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=76.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceE----EEeecccc---c-chhhhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLK----LIYDRGLI---G-SIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~----~~~~rgl~---~-~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
+|||+|||-|.+-..|++.+..- ..+.+| .+..++ +|..+|+- - ...|.-.+ ...+.-||+||--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999876421 255555 332222 23333441 1 11122222 22358888888444333
Q ss_pred h--hh--hcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccccc
Q 007128 532 D--IE--KRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 532 ~--~~--~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~ 584 (617)
- |. ...-.+...+--++++|+|||.|+|..=.=..++|.+.......+.+.++
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEee
Confidence 1 11 11112245566788999999999999888788899888888877765333
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.00065 Score=75.72 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCcccccc---
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAH--- 283 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~--- 283 (617)
++.+|||++||+|.=+.++++. .|++.|+++.-+...+ +...+.|+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3478999999999777666653 4788888876555444 333444654 455566666553 2236799998
Q ss_pred -ccccc-c--------ccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 284 -CSRCR-I--------DWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 284 -~s~~l-~--------h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
|+..- + .|... ...+|..+.+.|||||+++.++-...+...+ +.+..++++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE-----~vV~~~L~~ 260 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ-----AVCLWLKET 260 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH-----HHHHHHHHH
Confidence 55211 1 11110 0247788899999999999987554433322 334555554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.00019 Score=79.45 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=64.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc--ccch-hhhhhhcccC-Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSI-HNWCEAYSTY-PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~-~~~~e~~~~~-p~tfDlvh~~ 527 (617)
.+|||||||+|+.+.++++. +. .|+.+|. +++++.+.++ |+ +-.. .|. ..++.+ +++||.|.++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADA-ERLTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch-hhhhhhhhccCCEEEEC
Confidence 36999999999999888764 33 5677774 5666665544 33 1111 122 123322 3789998742
Q ss_pred ------hhhhhhhh--cCC----------CcccchhhccccccCcceEEEecChh----HHHHHHHhhh
Q 007128 528 ------TVFSDIEK--RGC----------SGEDLLLEMDRILRPTGFVIIRDKQS----VVDFVKKYLR 574 (617)
Q Consensus 528 ------~~~~~~~~--~~c----------~~~~~l~Em~RiLrPgG~~ii~~~~~----~~~~~~~~~~ 574 (617)
+++.+-.. .+- .-..+|.+..+.|||||.++++.-.- ..+.|+.+++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 12210000 000 11367889999999999998865432 2333555554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.00075 Score=65.74 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=63.2
Q ss_pred eEEEeeccccccccccccc--chh-----------hhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccc
Q 007128 216 RTVLDVGCGVASFGAYLLS--SDV-----------ITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~--~~V-----------~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFD 280 (617)
..|||--||+|++..+.+. ..+ +|.|+++.+++.++. .+...++. +.+...|+..+++.++++|
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceEEEecchhhcccccCCCC
Confidence 6899999999988755433 233 489999988877764 44444543 5677889999998888999
Q ss_pred cccccccccccccc----------cceEEEEecccccCCceeeec
Q 007128 281 LAHCSRCRIDWLQR----------DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 281 lV~~s~~l~h~~~~----------~~~~L~el~RvLrPGG~lvis 315 (617)
+|+++- +|-.. ...+++++.|+|++...++++
T Consensus 109 ~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999862 22111 124788999999994444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.00097 Score=63.42 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.1
Q ss_pred eeEEEeecccccccccccccch-----hhhhccCCCccchhhhHHHHHhCCCcccccccccccC-----CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSSD-----VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-----YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~~-----V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-----f~~~sFDlV~~ 284 (617)
+.-||++|.|||-++..+++++ +++++.++ .....-.+....+.+..+|+..+. +.+..||.|+|
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 3679999999999999999875 45555554 333334445555667777776654 56778999998
Q ss_pred ccccccccccc-ceEEEEecccccCCceeeec
Q 007128 285 SRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 285 s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
.--++.+.... .++|+++...|++||-++--
T Consensus 124 ~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 124 GLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 75444443321 34888899999999988864
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0014 Score=67.54 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=69.8
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHH---HH-HhCCCccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQF---AL-ERGIPAYLGV 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~---a~-~rg~~~~~~~ 266 (617)
-|.+.+.+..-. ..+.+++||=||.|.|..++.++++ .|+.+|+++..++.++.-+ +. -....+.+..
T Consensus 57 iYHEmLvHppl~------~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~ 130 (262)
T PRK00536 57 IESELLAHMGGC------TKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK 130 (262)
T ss_pred hHHHHHHHHHHh------hCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee
Confidence 465666554333 3344689999999999999999987 5888888876665444211 00 0112222221
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
... .-..++||+|++-.. ....+.+.+.|+|+|||.++.-.-..
T Consensus 131 -~~~--~~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 131 -QLL--DLDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -hhh--hccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 111 112368999996532 22457788999999999999964433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.00088 Score=72.24 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--------C---C-----CC
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--------Y---P-----SR 277 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--------f---~-----~~ 277 (617)
+|||++||+|.++..|++. .|+++|+++.++..++ +.+...++ ++.+..+|+.++- + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988764 6999999999888777 44555555 4667777765421 1 0 11
Q ss_pred ccccccccccccccccccce-EEEEe-cccccCCceeeecChh
Q 007128 278 SFELAHCSRCRIDWLQRDGI-LLLEL-DRLLRPGGYFAYSSPE 318 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~-~L~el-~RvLrPGG~lvis~p~ 318 (617)
.||+|+. +++.. +..++ ..+++|+++++++..+
T Consensus 279 ~~d~v~l--------DPPR~G~~~~~l~~l~~~~~ivYvsC~p 313 (353)
T TIGR02143 279 NCSTIFV--------DPPRAGLDPDTCKLVQAYERILYISCNP 313 (353)
T ss_pred CCCEEEE--------CCCCCCCcHHHHHHHHcCCcEEEEEcCH
Confidence 3677753 22222 22333 3445688999997543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.002 Score=64.12 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=80.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee---cccccchhhhhhhcccCC-cchhhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD---RGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~---rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~ 535 (617)
.++|+||+.|..+..|...+| -.+.-+|. ..|++-+.+ -+++..+..-.|.|.+|- ++||||.++..++-.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~-- 150 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT-- 150 (325)
T ss_pred ceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh--
Confidence 599999999999999999886 23444443 355544333 355444444346665565 999999988877733
Q ss_pred cCCCcccchhhccccccCcceEEEec----Chh-------------------------HHHHHHHhhhhcccccc
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRD----KQS-------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~----~~~-------------------------~~~~~~~~~~~~~w~~~ 581 (617)
-+++.-|....-+|||.|.||-+- +.. .+..+..++.+.+++.+
T Consensus 151 --NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 378889999999999999997542 211 23346678888888885
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0015 Score=68.18 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=64.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCccccccccccc-CCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPAYLGVLGTKRL-PYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~~~~~~d~~~l-pf~~~sFDlV~~s 285 (617)
.++||-||-|.|.+++.++++ +++.+||.+..++.++.-+..-. ...+.+...|.... .-..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 369999999999999999876 47888887765554442221111 12234444454332 2223489999865
Q ss_pred ccccccccc-----cceEEEEecccccCCceeeecChh
Q 007128 286 RCRIDWLQR-----DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 286 ~~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. -+ ..+ ...+++.+.|.|+++|+++.-.-.
T Consensus 157 ~t-dp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 157 ST-DP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CC-CC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 32 22 111 134778899999999999997433
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.00048 Score=66.91 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=68.0
Q ss_pred hHHHhhhcchhhHhhhc--CCceEEEEeecCCC-CCceEEE---eec-cc--ccchhhhh-hhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALK--EKDVWVMSVVPEDG-PNTLKLI---YDR-GL--IGSIHNWC-EAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~--~~~~~v~~v~~~~~-~~~l~~~---~~r-gl--~~~~~~~~-e~~~~~p~tfDlvh~~~~~ 530 (617)
.++|+|||+|+.+..++ .... .|.+++. +..++.+ .+| |+ +-.+..+. +.++.+| +||.|.-..-
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~---~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg- 111 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSG---RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG- 111 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCc---eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-
Confidence 59999999999998888 3233 4555553 2222222 222 21 12222222 4455555 8888875222
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccc-cc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNW-EA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w-~~ 580 (617)
-+++.+|...-..|||||.+|+.-- .+....+-+.++.+++ ++
T Consensus 112 -------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei 156 (187)
T COG2242 112 -------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREI 156 (187)
T ss_pred -------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceE
Confidence 3667888888899999999988654 3455566777777888 55
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.00023 Score=72.37 Aligned_cols=96 Identities=7% Similarity=0.053 Sum_probs=53.9
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc-------ccchhhhhhhc-ccC-C
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL-------IGSIHNWCEAY-STY-P 518 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl-------~~~~~~~~e~~-~~~-p 518 (617)
..+-++|||+|||+|.-+.+|+.. +.. |+.+|. +.+++.|.+. |+ .|..-+....+ +.. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~---v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR---ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 345667999999999755555432 233 444442 3444443322 33 22222221111 111 2
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+||+|.++.-=. .....+.++.|.|||||.+++.+
T Consensus 143 ~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEEc
Confidence 6899998643222 23456778889999999998744
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0026 Score=65.33 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=57.5
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
.++.+.+.+.. .. ..+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...++.+..+|+..
T Consensus 18 v~~kIv~~a~~------~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk 87 (259)
T COG0030 18 VIDKIVEAANI------SP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALK 87 (259)
T ss_pred HHHHHHHhcCC------CC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhc
Confidence 34566666554 22 478999999999999999987 58999998865543332222 23456778888888
Q ss_pred cCCCCC-cccccccc
Q 007128 272 LPYPSR-SFELAHCS 285 (617)
Q Consensus 272 lpf~~~-sFDlV~~s 285 (617)
.++++. .++.|+++
T Consensus 88 ~d~~~l~~~~~vVaN 102 (259)
T COG0030 88 FDFPSLAQPYKVVAN 102 (259)
T ss_pred CcchhhcCCCEEEEc
Confidence 888753 57777755
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0014 Score=71.89 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=76.4
Q ss_pred EEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
++|-+|||.-.+...+-+. .|+.+|+|+..++..+...+.++ .-..+...|...+.|++++||+|+--..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999888888764 58889999988777766655332 3456778899999999999999987655444433
Q ss_pred ccc---------eEEEEecccccCCceeeecCh
Q 007128 294 RDG---------ILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 294 ~~~---------~~L~el~RvLrPGG~lvis~p 317 (617)
+.. ..+.++.|+|+|||+++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 322 356899999999999776543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.00073 Score=65.47 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccc---------cc-cCCC
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT---------KR-LPYP 275 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~---------~~-lpf~ 275 (617)
..+...+|||+||++|.|+..++++ .|+|+|+.+..... .+....+|. .. ++-.
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~-----------~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQ-----------NVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-T-----------TEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccccccc-----------ceeeeecccchhhHHHhhhhhcccc
Confidence 3334589999999999999998875 38899988752110 111111111 11 1112
Q ss_pred CCccccccccccccccccc----c-------ceEEEEecccccCCceeeecChh
Q 007128 276 SRSFELAHCSRCRIDWLQR----D-------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~~~----~-------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+.||+|+|-.+ .....+ . ...+.-+...|+|||.+++..+.
T Consensus 89 ~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999997642 111110 0 12344455779999998886544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0012 Score=65.40 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=71.8
Q ss_pred EEEeCceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccccccccccc--c--hhhhhccCCCc
Q 007128 171 MVVKGEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS--S--DVITMSLAPND 246 (617)
Q Consensus 171 ~~~~~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~--~--~V~gvDis~~d 246 (617)
.+..|-.+.+.-...+|..+-..-...+.+.+ .. +.+|||+-||.|.|+..++. . .|+++|+.|..
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--------~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a 137 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLV--------KP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA 137 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC----------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcC--------Cc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH
Confidence 44445555555555666554333333343332 22 37999999999999999887 2 49999999976
Q ss_pred cchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceee
Q 007128 247 VHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 247 l~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lv 313 (617)
++-.. +.++.+++. +....+|...+.. .+.||-|++.. +.....+|..+.+++++||.+-
T Consensus 138 ~~~L~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 138 VEYLK-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHH-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHH-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 65554 455555554 3455677776654 68999888653 2222347777889999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.00086 Score=62.91 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=43.2
Q ss_pred ccccCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeecChhhh
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
....+|.+++.|+|.|.+++.|..-+. ..++++.+|+|||||+|-++.|...
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 456789999999999999988876543 3489999999999999999877653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0019 Score=69.85 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=61.7
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc-C-CC--------------C
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL-P-YP--------------S 276 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l-p-f~--------------~ 276 (617)
.+|||++||+|.++..|+.. .|+++|+++.++..++ +.+...++ ++.+..+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 36999999999999988764 6999999998888777 44555555 467777776542 1 10 1
Q ss_pred Cccccccccccccccccccc-eEEEEe-cccccCCceeeecChh
Q 007128 277 RSFELAHCSRCRIDWLQRDG-ILLLEL-DRLLRPGGYFAYSSPE 318 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~~~~-~~L~el-~RvLrPGG~lvis~p~ 318 (617)
..||+|+.. +|. .+-.++ ..+.+|+++++++..+
T Consensus 287 ~~~D~v~lD--------PPR~G~~~~~l~~l~~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVD--------PPRAGLDDETLKLVQAYERILYISCNP 322 (362)
T ss_pred CCCCEEEEC--------CCCCCCcHHHHHHHHccCCEEEEEeCH
Confidence 258988732 211 122333 3334578888887544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0024 Score=71.00 Aligned_cols=108 Identities=15% Similarity=0.291 Sum_probs=66.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh----hhhhhccc--C-Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH----NWCEAYST--Y-PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~----~~~e~~~~--~-p~tfDlvh~~ 527 (617)
..|||+|||+|.|+..|++... .|+.+|. +.|++.|.+. |+ ..+. |+.+.+.. + +++||+|.++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3699999999999999998764 5666674 5676666543 22 1111 22222222 2 2679998752
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.++..+..++..+.+ |+|++.++++-.+..+.+ +..+. .-+|+.
T Consensus 375 -------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l 419 (443)
T PRK13168 375 -------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRL 419 (443)
T ss_pred -------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEE
Confidence 123233455555555 699999999977765543 55443 345765
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.00015 Score=72.37 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEeec----cc--ccchh-hhhhhcccCC--cch
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIYDR----GL--IGSIH-NWCEAYSTYP--RTY 521 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p--~tf 521 (617)
++.+. +|||+|||+|-++|.|+.. ...|.+|... +...+.|.++ |+ +..++ |-. ..+| ..|
T Consensus 70 l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~nv~~~~gdg~---~g~~~~apf 142 (209)
T PF01135_consen 70 LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDNVEVVVGDGS---EGWPEEAPF 142 (209)
T ss_dssp C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHSEEEEES-GG---GTTGGG-SE
T ss_pred cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCceeEEEcchh---hccccCCCc
Confidence 44443 6999999999999998864 2233333322 3333344333 22 12222 211 2233 679
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|.||++.... . +-.++-+-|||||.+|+=-.
T Consensus 143 D~I~v~~a~~-------~---ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVP-------E---IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBS-------S-----HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccc-------h---HHHHHHHhcCCCcEEEEEEc
Confidence 9999855444 2 23344466999999987544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.00068 Score=69.46 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh----CCCc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER----GIPA 262 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r----g~~~ 262 (617)
...|.+.+....-. ...+.++||=||-|.|..+..+++. .|+.+|+++..++.++.-+.... ..++
T Consensus 59 e~~y~e~l~h~~~~------~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~ 132 (246)
T PF01564_consen 59 EFIYHEMLVHPPLL------LHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV 132 (246)
T ss_dssp HHHHHHHHHHHHHH------HSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE
T ss_pred hHHHHHHHhhhHhh------cCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce
Confidence 35676666544332 1224579999999999999998875 48888888876666553222221 2345
Q ss_pred cccccccccc-CCCCC-ccccccccccccccccc----cceEEEEecccccCCceeeecC
Q 007128 263 YLGVLGTKRL-PYPSR-SFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 263 ~~~~~d~~~l-pf~~~-sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+...|.... .-..+ +||+|+.-.. -..... ...+++.+.+.|+|||.+++-.
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6666665432 22233 8999986432 111111 1357888999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0045 Score=62.29 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=82.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCc---------eEEEeecccccchhhhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNT---------LKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~---------l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
+.+||+|+-||||+-.|.++|+. -|.++| +-++ .-+.+||-=+-.+.. +.|. .-.|++.|+-.
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~~~---~~~d~~v~DvS 153 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--EDFT---EKPDLIVIDVS 153 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HHcc---cCCCeEEEEee
Confidence 45999999999999999998763 244444 2222 223344421111111 2222 35678888887
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccccccccC
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
|- .+..+|-.+..+|.|+|.++..-.+. +++++.+.+...+|... .+.-.
T Consensus 154 FI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~-gl~~S 225 (245)
T COG1189 154 FI-------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK-GLIKS 225 (245)
T ss_pred hh-------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe-eeEcc
Confidence 77 34568888888888888876655544 67789999999999985 33322
Q ss_pred CCCCCCCCCeEEEEEEec
Q 007128 588 SSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 588 ~~~~~~~~~~~~l~~~K~ 605 (617)
....+...-|+++..+|.
T Consensus 226 pi~G~~GNiE~l~~~~k~ 243 (245)
T COG1189 226 PIKGGKGNIEFLLLLKKS 243 (245)
T ss_pred CccCCCCcEeeeeeeecc
Confidence 222222344777766663
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0017 Score=68.98 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=66.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc----CCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST----YPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~----~p~tfDlvh~~~~~ 530 (617)
..|||+|||+|.|+..|++++. .|+.+|. +.+++.|.+. |+ ..++..+.+... .+..||+|..+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 4699999999999999999765 5677774 5666555433 33 222222222211 12579998864
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.+|..+...+.++-.-++|++.++++-.+..+-+ ++.+ . +|+.
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~ 291 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRI 291 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEE
Confidence 1333444444455555789999999988875543 4444 3 5654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.003 Score=62.14 Aligned_cols=97 Identities=13% Similarity=-0.036 Sum_probs=57.1
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cC-C-CCC-ccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LP-Y-PSR-SFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lp-f-~~~-sFDlV~~s~ 286 (617)
.+|||++||+|.++..++.+ .|+++|.++..+..++ +.+...+. ++.+...|+.. +. + ... .||+|+..-
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 58999999999999999876 4889999887666555 33333343 24566666633 22 1 122 367776432
Q ss_pred cccccccc-cceEEEEe--cccccCCceeeecC
Q 007128 287 CRIDWLQR-DGILLLEL--DRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~-~~~~L~el--~RvLrPGG~lvis~ 316 (617)
- +... ...++..+ ..+|+++|.+++..
T Consensus 130 P---y~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 P---FFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred C---CCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 1110 01122211 34678888887753
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.00077 Score=74.79 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=64.8
Q ss_pred ChhhhhhhHHHHHHHHHHHHHhhccccCccc----hhhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCc---eE
Q 007128 428 SSEMFEKDTESWRNRVDSYWNLLSPKIQSNS----LRNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNT---LK 496 (617)
Q Consensus 428 ~~e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~----~r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~---l~ 496 (617)
|-|.|+.|...+..-=+.-.+.|...+.... -..|||+|||+|.+...-++.+ .-...|.+++. ++. ++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 6799999988775422211112222222222 3459999999999864333221 00113444443 222 21
Q ss_pred -EEeeccc---ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 497 -LIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 497 -~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.+...|+ |-+++.-.+.+. .|...|+|.+-.+=+.+ .+. .+...|.-.+|.|||||.+|
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 1123343 555554444443 35799999854333311 122 44567888999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0014 Score=70.74 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----ccc-----ccchhhhhhhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGL-----IGSIHNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl-----~~~~~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
.++|+|||+|+...+.+.... -++..++. +..+..+.+ .++ + .+++ +..-++=+++||.+-+..+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~-~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVAD-FGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhh-hhcCCCCccccCcEEEEeec
Confidence 788999999999998876432 13444442 211111111 111 2 2222 21112112999999998888
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.|.. +.+.++.|+.|+|+|||+++.-+-.
T Consensus 189 ~~~~----~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAP----DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCC----cHHHHHHHHhcccCCCceEEeHHHH
Confidence 8776 7899999999999999999886654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0014 Score=69.29 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=67.7
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
....+|+|.|.|..+..+... .|.++++....+-.++...+ .| +....+|..+- .| +-|+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~-~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQD-TP--KGDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceeccccccc-CC--CcCeEEEEeecccCC
Confidence 468999999999999888874 46677766544444332332 23 44444453332 33 236999999999997
Q ss_pred ccc-ceEEEEecccccCCceeeecCh
Q 007128 293 QRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 293 ~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
+.. ..+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 753 5699999999999999999754
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0005 Score=73.38 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=60.2
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc---------------cccc-hh-hhh-hhc-ccC
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG---------------LIGS-IH-NWC-EAY-STY 517 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg---------------l~~~-~~-~~~-e~~-~~~ 517 (617)
.-..|||||||=||=..-....++ -.++.+|. ...++.|.+|- .... ++ |.. +.+ ..+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 445699999999984433333333 24455553 45555566665 1111 11 100 111 122
Q ss_pred C---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 518 P---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 518 p---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+ ..||+|=|-..|++.-...-....+|..+...|||||+||.+-+-+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2 5999998777777654444455679999999999999999887754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0013 Score=69.47 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=58.2
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCC-cchhhhhh----hhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYP-RTYDLLHA----WTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p-~tfDlvh~----~~~ 529 (617)
+.|||+|||+|.++..-++.|. .|+.|...+. .-..+++.+.|+ |-++..--|++ ..| .-.|+|.+ +-+
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhHHH
Confidence 3599999999999888787765 3444443332 222344555555 44555555555 356 89999874 112
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEE
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
|. .. -+..+|.-=||.|+|||.++
T Consensus 141 l~---Es--MldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LY---ES--MLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH---hh--hhhhhhhhhhhccCCCceEc
Confidence 21 11 23467777899999999874
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0036 Score=65.15 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=55.4
Q ss_pred eeEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCCCcc---ccc-ccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIPAY---LGV-LGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~~~---~~~-~d~~~lpf~~~sFDlV~~s 285 (617)
+.+|||+|||+|..+....+ ..++++|.|+.++..++. .... ..... ... .-....++. ..|+|+++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRA-GPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhc-ccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 46899999999965443332 257788888877765542 2221 11111 110 001123333 34999999
Q ss_pred cccccccccc-ceEEEEecccccCCceeeecChhh
Q 007128 286 RCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+++.+..+.. ..+++.+.+.+.+ +|+|..|..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 9987765421 1244555555544 888876544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0012 Score=66.79 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=71.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEE-----------------eecccccchhhhhhhcccCC---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLI-----------------YDRGLIGSIHNWCEAYSTYP--- 518 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~-----------------~~rgl~~~~~~~~e~~~~~p--- 518 (617)
..||+.|||.|-=+.+|+++|.. |+.+|. +..++.+ ..+|. .+.-+|.+|-+++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~--~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGD--DIEIYVADIFNLPKIA 119 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccC--ceEEEEccCcCCCccc
Confidence 37999999999999999999984 444442 2111111 11222 2333445544443
Q ss_pred ---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh--h---------HHHHHHHhhhh-cccccc
Q 007128 519 ---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ--S---------VVDFVKKYLRA-LNWEAV 581 (617)
Q Consensus 519 ---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~--~---------~~~~~~~~~~~-~~w~~~ 581 (617)
+.||+|.-...|.++..+ .-.....-|.++|||||.+++---. . ..++|+.+... ...+.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred cccCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEe
Confidence 479998876777766422 3457888899999999987543211 1 34567776643 344444
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0015 Score=63.97 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=57.2
Q ss_pred EEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCcccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+++|||+|.|.=+.-|+ +..++-+|-...-+.--. ..+.+-+++ +.+....++. +....+||+|++- ++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR-Av~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR-AVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE-SSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEee-hhc--
Confidence 79999999996444443 335676766554332221 233444655 6677666766 5556799999854 322
Q ss_pred ccccceEEEEecccccCCceeeec
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+...++.-+.+.|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 2235677788899999988874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0026 Score=69.15 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=72.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC---ccccccccccc-C---CCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRL-P---YPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~l-p---f~~~sFDlV~~ 284 (617)
+++|||+=|=||.++.+.+.. .|++||+|...+.-++.++ .-+++. ..+.++|+... . -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~-~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHH-HhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 479999999999988887764 6999999998888887444 444543 56777775432 2 22348999986
Q ss_pred cccc--------cccccccceEEEEecccccCCceeeecChhhh
Q 007128 285 SRCR--------IDWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 285 s~~l--------~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
.--. .....+...++..+.++|+|||.+++++....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 4210 11112223477888999999999999865443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.01 Score=60.80 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=50.6
Q ss_pred ceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC----cccccccccccCCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP----AYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~----~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+...||+||.|||.++..|++. .|+++++++.|+.+-..+.. |.+ ..+..+|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~---gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQ---GTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhc---CCCccceeeEEecccccCCCc--ccceeecc
Confidence 3478999999999999999986 59999999988765553322 333 45666777777766 69999865
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.0084 Score=56.44 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=37.8
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+|.|+|-|.+|+.|+.-. ....+++|-.|+|||||++-|.-+-
T Consensus 45 dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3999999999999998632 4468999999999999999888764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.00089 Score=67.78 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=53.6
Q ss_pred hHHHhhhcchhhHhhhcCCce--EEEEeecCCC-CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhh-
Q 007128 461 NLMDMKAHLGSFAAALKEKDV--WVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIE- 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~--~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~- 534 (617)
+|||+|||+|.|+.+++++-. ...+|+.+|. +.+++.|.+.- ...+-...++..+ +.+||+|.++==|..+.
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 699999999999998875310 0126777774 56666655332 1122222344333 36899997643332111
Q ss_pred ---hcC---CCc-ccchhhccccccCcce
Q 007128 535 ---KRG---CSG-EDLLLEMDRILRPTGF 556 (617)
Q Consensus 535 ---~~~---c~~-~~~l~Em~RiLrPgG~ 556 (617)
..+ ..+ ..++....|+|+||++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 011 122 2366667788888887
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.0092 Score=61.08 Aligned_cols=121 Identities=23% Similarity=0.302 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec-------ccc
Q 007128 435 DTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR-------GLI 504 (617)
Q Consensus 435 D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r-------gl~ 504 (617)
+++.|-++|.+-.+... +.+--.+||+|||+|-++-.|+.- .+ .|+++|- +..+..|.+. |-|
T Consensus 129 ETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred cHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 47788888765332221 111116999999999999888753 22 3455552 3333333222 446
Q ss_pred cchhhhh--hhcccCC---cchhhhhhhh--hhh----hhh------hcC--------C--CcccchhhccccccCcceE
Q 007128 505 GSIHNWC--EAYSTYP---RTYDLLHAWT--VFS----DIE------KRG--------C--SGEDLLLEMDRILRPTGFV 557 (617)
Q Consensus 505 ~~~~~~~--e~~~~~p---~tfDlvh~~~--~~~----~~~------~~~--------c--~~~~~l~Em~RiLrPgG~~ 557 (617)
.+.|... +.+.++| ..+|++.++- +++ .+. .+. | .+..+..=.-|.|+|||++
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 7666422 2244454 8899887542 111 010 000 0 0113334456999999999
Q ss_pred EEecC
Q 007128 558 IIRDK 562 (617)
Q Consensus 558 ii~~~ 562 (617)
++.-.
T Consensus 282 ~le~~ 286 (328)
T KOG2904|consen 282 QLELV 286 (328)
T ss_pred EEEec
Confidence 88655
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.008 Score=66.46 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=68.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC---CCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP---SRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~---~~sFDlV~~s~~l 288 (617)
..++||+=||.|.|+..|+++ .|+|+++++.+++.|+ +.|+..++ ++.|..+++++.... ...||.|+..
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD--- 369 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD--- 369 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence 368999999999999999975 6999999999998888 55665655 488888887776533 2478998732
Q ss_pred cccccccceEE----EEecccccCCceeeecChhh
Q 007128 289 IDWLQRDGILL----LELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 289 ~h~~~~~~~~L----~el~RvLrPGG~lvis~p~~ 319 (617)
++..-+ -+...-++|-.++++|..+.
T Consensus 370 -----PPR~G~~~~~lk~l~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 370 -----PPRAGADREVLKQLAKLKPKRIVYVSCNPA 399 (432)
T ss_pred -----CCCCCCCHHHHHHHHhcCCCcEEEEeCCHH
Confidence 222211 12233356778899986543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.0056 Score=63.04 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=59.1
Q ss_pred HHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCc
Q 007128 462 LMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSG 540 (617)
Q Consensus 462 vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~ 540 (617)
++|+|||.|- ++...+. ..+.+.|. ...+..+...|-....-.-+...+.=+.+||..-...|.+|+. .++.-
T Consensus 49 ~~d~gCGngk---y~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhls-T~~RR 122 (293)
T KOG1331|consen 49 GLDVGCGNGK---YLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLS-TRERR 122 (293)
T ss_pred eeecccCCcc---cCcCCCc--ceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhh-hHHHH
Confidence 9999999883 2332221 12444453 4555555555542111111222332229999999999999987 77778
Q ss_pred ccchhhccccccCcceEEE
Q 007128 541 EDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii 559 (617)
+.+|.||-|+|||||...|
T Consensus 123 ~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 123 ERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHhcCCCceEE
Confidence 8999999999999999443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.0014 Score=62.98 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=55.3
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
-.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++-- +-.++.-.+.++ ++ ..||.|.++--|.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN- 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc-
Confidence 34799999999999999999854 4566663 455555443311 112221112222 23 4689987765443
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+. ...+..++.+. .+.++|.+++.....
T Consensus 89 ~~--~~~i~~~l~~~--~~~~~~~l~~q~e~a 116 (169)
T smart00650 89 IS--TPILFKLLEEP--PAFRDAVLMVQKEVA 116 (169)
T ss_pred cH--HHHHHHHHhcC--CCcceEEEEEEHHHh
Confidence 21 11233343332 256899998887643
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.00099 Score=66.03 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=54.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----ccccchhhhhhh-cccCC--cchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEA-YSTYP--RTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~-~~~~p--~tfDlvh~~~~~~~ 532 (617)
..||+||||+|--+|.|++....|.+|.-+ +...+.|..+ |+ .+++-.+-+ .--|| ..||.|+.+....
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~- 149 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPYDRIIVTAAAP- 149 (209)
T ss_pred CeEEEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCcCEEEEeeccC-
Confidence 579999999999999999865544333322 2222222221 22 112211111 22344 7899999877776
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+...|+ +-|||||.+++=.-
T Consensus 150 ------~vP~~Ll---~QL~~gGrlv~PvG 170 (209)
T COG2518 150 ------EVPEALL---DQLKPGGRLVIPVG 170 (209)
T ss_pred ------CCCHHHH---HhcccCCEEEEEEc
Confidence 3344555 67999999988554
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.0048 Score=64.22 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEE----eeccc-------ccchhhhhhhc--ccC
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLI----YDRGL-------IGSIHNWCEAY--STY 517 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~----~~rgl-------~~~~~~~~e~~--~~~ 517 (617)
...+-++||++|+++|..+.+|+.. +.. |+.++. +...++| .+-|+ .|...+....+ ..-
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccc
Confidence 3445678999999999999988852 332 333332 2333322 22243 23322222111 111
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.+||+|..+.-=. +....+...-+.|||||.+++.+.
T Consensus 192 ~~~FD~VFIDa~K~-------~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 192 GSSYDFAFVDADKR-------MYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCcEEEEecC
Confidence 36899998533211 334566777799999999987654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.014 Score=54.19 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred eeEEEeecccccc-cccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC-CCcccccccccc
Q 007128 215 LRTVLDVGCGVAS-FGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP-SRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~-~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~-~~sFDlV~~s~~ 287 (617)
..+|||||||+|. ++..|.+. .|+++|+++. .++.+++.++ .+.+.|...-.+. -+.+|+|.+.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~-----aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK-----AVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 3689999999995 88888775 5888888775 3455555554 3455565544432 246888876543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.01 Score=59.37 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC----CCceEEEe-eccc--
Q 007128 433 EKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG----PNTLKLIY-DRGL-- 503 (617)
Q Consensus 433 ~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~----~~~l~~~~-~rgl-- 503 (617)
.+..+.|.+++-+=...+. ..... -.+++|+|+|.| |.--++...+. +|+-+|+ -+.|+.+. +=||
T Consensus 44 ~~~~e~~~rHilDSl~~~~-~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 44 RDPEELWQRHILDSLVLLP-YLDGK-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCHHHHHHHHHHHHhhhhh-ccccc-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCC
Confidence 3446788887765333322 11111 367999999999 44444555555 3555553 13343332 2355
Q ss_pred ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE---EecChhHHHHHHHhhhhccccc
Q 007128 504 IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI---IRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 504 ~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i---i~~~~~~~~~~~~~~~~~~w~~ 580 (617)
+..+|.-.|.|..=++-||+|.|-.+ . ++..++.=.-..||+||.++ +..-.+.+.+.+.......+..
T Consensus 119 v~i~~~RaE~~~~~~~~~D~vtsRAv-a-------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 119 VEIVHGRAEEFGQEKKQYDVVTSRAV-A-------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred eEEehhhHhhcccccccCcEEEeehc-c-------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence 55666666665531111999986222 2 33334444457899988874 4444456777888888888887
Q ss_pred ccccccCCCCCCCCCCeEEEEEEe
Q 007128 581 VATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+ .+.....+....+..+++.+|
T Consensus 191 ~--~~~~~~~p~~~~~r~l~ii~~ 212 (215)
T COG0357 191 E--KVFSLTVPELDGERHLVIIRK 212 (215)
T ss_pred E--EEEEeecCCCCCceEEEEEec
Confidence 4 333334444444455555555
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.009 Score=66.15 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccC---Ccchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTY---PRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~---p~tfDlvh~~~ 528 (617)
..|||+|||+|.|+..|++... .|+.+|. +.+++.|.+. |+ +-.++ +..+.++.+ +++||+|..+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC-
Confidence 3699999999999999998654 4555553 4555544432 22 11111 222222222 2578988741
Q ss_pred hhhhhhhcCCC-cccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 529 VFSDIEKRGCS-GEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~~~~c~-~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
.++-. ...++.++.+ |+|++.++++-.+..+.+--..+..-+|+.
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 12222 2455556555 899999999988777665555555566765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.0052 Score=64.22 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=58.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
++.|||||||+|.+....+.. .|.+++.|. |...|+ +....+.+. +.+..+-++++.+| +..|+|++--.-.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 468999999999776655543 588887765 433333 222323332 34445557777777 5799998643211
Q ss_pred ccccccceEEE---EecccccCCceeeec
Q 007128 290 DWLQRDGILLL---ELDRLLRPGGYFAYS 315 (617)
Q Consensus 290 h~~~~~~~~L~---el~RvLrPGG~lvis 315 (617)
-.. + +++|. ...|.|+|.|..+=+
T Consensus 255 mL~-N-ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLV-N-ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhh-h-HHHHHHHHHHHhhcCCCCcccCc
Confidence 111 1 22222 245899999998854
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.0022 Score=67.69 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=68.0
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeeccccccccccccc-----------chhhhhccCCCccchhhhHHHHHhCC
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS-----------SDVITMSLAPNDVHQNQIQFALERGI 260 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~-----------~~V~gvDis~~dl~~a~~~~a~~rg~ 260 (617)
....+.+.+++.. .. ..+|||-.||+|.|...+.+ ..++|+|+++.....++..... +++
T Consensus 32 ~~i~~l~~~~~~~------~~--~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP------KK--GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGI 102 (311)
T ss_dssp HHHHHHHHHHHTT-------T--TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHhhhhc------cc--cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcc
Confidence 3455666777754 33 36899999999998776654 2578888887666655544333 232
Q ss_pred Cc---ccccccccccCCC--CCccccccccccc--ccccc-----cc-------------ceEEEEecccccCCceeeec
Q 007128 261 PA---YLGVLGTKRLPYP--SRSFELAHCSRCR--IDWLQ-----RD-------------GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 261 ~~---~~~~~d~~~lpf~--~~sFDlV~~s~~l--~h~~~-----~~-------------~~~L~el~RvLrPGG~lvis 315 (617)
.. .+...|....+.. ...||+|+++--+ ..|.. +. ..++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 22 2444454333322 4689999986311 10100 00 12567788999999999888
Q ss_pred Chhh
Q 007128 316 SPEA 319 (617)
Q Consensus 316 ~p~~ 319 (617)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 7764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.0033 Score=55.52 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHhhhcchh--hHhhhcCCceEEEEeecCCC-CCceEEEeecc-------cccchhhhhhhcccCC--cchhhhhhhhh
Q 007128 462 LMDMKAHLGS--FAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG-------LIGSIHNWCEAYSTYP--RTYDLLHAWTV 529 (617)
Q Consensus 462 vLD~g~G~G~--fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg-------l~~~~~~~~e~~~~~p--~tfDlvh~~~~ 529 (617)
|+|+|||+|. +.+.+...+..+.. +|. +.++..+..+. +.....+.......+. .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554433333 332 23333222111 1111112211111233 389999 6555
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
..+.. +...++.++.|+|+|+|.+++.....
T Consensus 128 ~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLL----PPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcC----CHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44332 26789999999999999999988764
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.0061 Score=59.54 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=63.7
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+++|||+|.|+|..+..-+.. .|+..|+.+. ...+..-.+..+++.+.+...|..- .+..||+|+.+..++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3479999999999655444332 5888888863 3344434566677777666554333 5678999999887554
Q ss_pred cccccceEEEEecccccCCceeeecChhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.... .+++. ..+.|+..|..++..-+.
T Consensus 155 ~~~a-~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 HTEA-DRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred chHH-HHHHH-HHHHHHhCCCEEEEeCCC
Confidence 4332 34555 666666666655544333
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.0035 Score=63.70 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=64.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccch----hhhhhhcccCCcchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSI----HNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~----~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.|||.|.|+|.++++|+..-.-...|...+. ++..+.|.+. |+.-.+ -|.++... +..||.|..
T Consensus 97 rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~~~vDav~L----- 169 (256)
T COG2519 97 RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--EEDVDAVFL----- 169 (256)
T ss_pred EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--ccccCEEEE-----
Confidence 5999999999999999953111112333332 3333333322 331101 13333322 268888765
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~ 581 (617)
++. ++-.+|..++.+|+|||.+++-.+- +-++++-..++..+|--+
T Consensus 170 Dmp----~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 170 DLP----DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred cCC----ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 233 6678888899999999999877663 344444444444466543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.018 Score=60.26 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=39.2
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--HHHHHHHh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--VVDFVKKY 572 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--~~~~~~~~ 572 (617)
..||+|-|.-+|++-........-+|..+.+.|||||+||-+-|.+ ++.+|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 4499998877777543333344568999999999999999888765 45555544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.004 Score=75.40 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=73.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-------------------cc---ccchh-hhhhhccc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-------------------GL---IGSIH-NWCEAYST 516 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-------------------gl---~~~~~-~~~e~~~~ 516 (617)
.|||+|||+|.++.+|+++.-. -.|+.+|. +.+++.|.+. ++ +-.++ ||.+.+..
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5999999999999999875210 14555663 4555444211 11 11122 45444321
Q ss_pred CCcchhhhhhhh---------hhh-hhh-----------hcCCCc-------------ccchhhccccccCcceEEEecC
Q 007128 517 YPRTYDLLHAWT---------VFS-DIE-----------KRGCSG-------------EDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 517 ~p~tfDlvh~~~---------~~~-~~~-----------~~~c~~-------------~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
....||+|.++= .++ .+. .+.|.+ ..++.+..++|||||++++---
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 112599987431 111 110 123333 3578888999999999999988
Q ss_pred hhHHHHHH-Hhhhhcccccc
Q 007128 563 QSVVDFVK-KYLRALNWEAV 581 (617)
Q Consensus 563 ~~~~~~~~-~~~~~~~w~~~ 581 (617)
...-+.++ +++.+.+|+.+
T Consensus 280 ~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 280 GRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccHHHHHHHHHHHHCCCCee
Confidence 88888888 69988887764
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.037 Score=56.77 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLG 268 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d 268 (617)
..|..+|.. .+| .+||+-|.|+|+++.+++.. .+...|+...-...|. +.-++.++ ++.+..-|
T Consensus 95 a~I~~~L~i------~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~-eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 95 AMILSMLEI------RPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKAL-EEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHhcC------CCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHH-HHHHHhCCCcceEEEEee
Confidence 567777776 444 79999999999999888764 4666777443222222 22233444 46666777
Q ss_pred ccccCCC--CCccccccccccccccccccceEEEEecccccCCc-eeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 269 TKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 269 ~~~lpf~--~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG-~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+....|. +..+|.|+ +..+.+ ..++--++.+||.+| +|+--.|... .-+.--+++.+.||..+
T Consensus 166 Vc~~GF~~ks~~aDaVF-----LDlPaP-w~AiPha~~~lk~~g~r~csFSPCIE--------Qvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVF-----LDLPAP-WEAIPHAAKILKDEGGRLCSFSPCIE--------QVQRTCEALRSLGFIEI 231 (314)
T ss_pred cccCCccccccccceEE-----EcCCCh-hhhhhhhHHHhhhcCceEEeccHHHH--------HHHHHHHHHHhCCCceE
Confidence 7776665 56789886 333333 456777777999877 5554344331 11344556777788544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.0075 Score=64.08 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=61.3
Q ss_pred eEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhCCCccc--ccccccc----cCC--CCCcc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERGIPAYL--GVLGTKR----LPY--PSRSF 279 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg~~~~~--~~~d~~~----lpf--~~~sF 279 (617)
..++|+|||.|.=+..|++. .++++|+|...+..+..+........+.+ ..+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999765544432 36788888888777765554223222333 3444432 221 12345
Q ss_pred cccccccccccccccc--ceEEEEecc-cccCCceeeecC
Q 007128 280 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFAYSS 316 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~--~~~L~el~R-vLrPGG~lvis~ 316 (617)
.+++.....+.-.++. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 6665543333333322 358899999 999999999953
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.017 Score=65.65 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=38.7
Q ss_pred eeEEEeecccccccccccccc------------hhhhhccCCCccchhhhHHHHHhCCCccccccccccc-----CCCCC
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-----PYPSR 277 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-----pf~~~ 277 (617)
..+|||.|||+|.+...++.. .++++|+++..+..+.............+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 468999999999888776542 3566666665554444332221112222222221111 11125
Q ss_pred cccccccc
Q 007128 278 SFELAHCS 285 (617)
Q Consensus 278 sFDlV~~s 285 (617)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.026 Score=62.45 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=57.8
Q ss_pred CceeecCCCCccccCchh----hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccc
Q 007128 175 GEKIIFPGGGTHFHYGAD----KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVH 248 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~----~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~ 248 (617)
+-+++|+.+ .|.+... .+...+.+.+.+ +.+ ..+||+-||||.++..+++. .|+|+++++.++.
T Consensus 350 ~ltF~iSp~--AFFQ~Nt~~aevLys~i~e~~~l------~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 350 GLTFRISPG--AFFQTNTSAAEVLYSTIGEWAGL------PAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE 419 (534)
T ss_pred CeEEEECCc--hhhccCcHHHHHHHHHHHHHhCC------CCC--cEEEEEeecCCceehhhhccccceeeeecChhhcc
Confidence 445555443 3555433 344455666665 434 68999999999999999886 6999999999988
Q ss_pred hhhhHHHHHhCC-Ccccccc
Q 007128 249 QNQIQFALERGI-PAYLGVL 267 (617)
Q Consensus 249 ~a~~~~a~~rg~-~~~~~~~ 267 (617)
.|. ..|..+|+ +++|.++
T Consensus 420 dA~-~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 420 DAE-KNAQINGISNATFIVG 438 (534)
T ss_pred hhh-hcchhcCccceeeeec
Confidence 887 56666776 4666665
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.0038 Score=67.79 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=65.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccC-CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP-YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp-f~~~sFDlV~~s~~l 288 (617)
.+|||+.||+|..+..++.+ .|+++|+++..++..+ +.+...++. +.+...|+..+- .....||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999888764 3889999987766555 333434443 556666655442 1235799997432
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+ ..+..++..+.+.+++||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 22235888899999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.021 Score=56.94 Aligned_cols=110 Identities=14% Similarity=0.255 Sum_probs=70.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhh-hhcccCC-cchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWC-EAYSTYP-RTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~-e~~~~~p-~tfDlvh~~~~~~~~~~~~ 537 (617)
-++|||||=....+..- .+ |. +|+++|....-+-|.+. |+. -++|+-+ +.||+|.++.|+.+++++.
T Consensus 53 lrlLEVGals~~N~~s~--~~-~f-dvt~IDLns~~~~I~qq-------DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG-WF-DVTRIDLNSQHPGILQQ-------DFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc--cC-ce-eeEEeecCCCCCCceee-------ccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 36999998754433222 12 33 58888853332222222 221 1233333 8999999999999886221
Q ss_pred CCcccchhhccccccCcce-----EEEecCh-h-------HHHHHHHhhhhcccccc
Q 007128 538 CSGEDLLLEMDRILRPTGF-----VIIRDKQ-S-------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~-----~ii~~~~-~-------~~~~~~~~~~~~~w~~~ 581 (617)
.--+.+.-..+.|||+|. ++|--|. + ..+.++.|+.+|++..+
T Consensus 122 -~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 122 -QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred -HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEE
Confidence 122788889999999999 5554443 3 34579999999999986
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.0057 Score=63.11 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=63.2
Q ss_pred ccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee------ccc----ccchhhhhhhcccCCcch
Q 007128 453 KIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD------RGL----IGSIHNWCEAYSTYPRTY 521 (617)
Q Consensus 453 ~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~------rgl----~~~~~~~~e~~~~~p~tf 521 (617)
+....+-++||=+|.|-|+.+..+.+.+- +|+-+|. +..++.+.+ .++ +- ++.+.. ....++|
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~-l~~~~~--~~~~~~f 140 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFT-HAKQLL--DLDIKKY 140 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEE-Eeehhh--hccCCcC
Confidence 34457789999999999999999999863 5555554 344333322 011 00 001111 1113789
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
|+|..++.|+ +.....+.|.|+|||.++......
T Consensus 141 DVIIvDs~~~---------~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 141 DLIICLQEPD---------IHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred CEEEEcCCCC---------hHHHHHHHHhcCCCcEEEECCCCc
Confidence 9999987665 345577899999999999976543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.022 Score=57.06 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred eeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+++|||.|.|.=+.-|+ +.+|+-+|-...-+.--+ +.+.+-+++ +.+....++.+.-....||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~-~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLR-EVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHH-HHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 4689999999996555544 335666655443222111 233455665 77777777776532111999985432
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.+...++.-....+++||.++.--.. .....+.+.+......+|.+.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~------~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL------AGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH------hhhhhHHHHHHHHHhhcCcEE
Confidence 12223455567788999987652111 112224556666666666443
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.0029 Score=63.06 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=58.3
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEE----eeccc---ccchh-hhhhhcccC-----
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLI----YDRGL---IGSIH-NWCEAYSTY----- 517 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~----~~rgl---~~~~~-~~~e~~~~~----- 517 (617)
+...+-++||++|+++|--+.+|++. +..+..+... +...++| ..-|+ |-.++ +..+-++.+
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~ 118 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE 118 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC
Confidence 44456778999999999888888853 4544444432 2333333 22244 22222 222223322
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++||+|..+.-=. +....+...-+.|||||.+|+.+..
T Consensus 119 ~~~fD~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 119 EGQFDFVFIDADKR-------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp TTSEEEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred CCceeEEEEccccc-------chhhHHHHHhhhccCCeEEEEcccc
Confidence 25899998533222 2234555666899999999998765
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.012 Score=58.85 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=62.9
Q ss_pred eEEEeecccccccccccc----cc-hhhhhccCCCccchhhhHHHHHhCCC--ccccccccc-cc-----CCCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLL----SS-DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTK-RL-----PYPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~----~~-~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~-~l-----pf~~~sFDlV 282 (617)
++.||||.=||..+..++ +. .|+++|+.+....... +..+..|+. +.+.++.+. .| ....++||++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 589999977775443333 33 5899999887666664 455555543 444444322 11 1356899999
Q ss_pred cccccccccccccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+. -+|-.....+..++.++||+||.+++.
T Consensus 154 Fv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 FV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 73 345554456888899999999999985
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.0047 Score=62.50 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=67.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-----CCceEEEeeccc--ccchh-hhhhhcccCC--cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-----PNTLKLIYDRGL--IGSIH-NWCEAYSTYP--RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-----~~~l~~~~~rgl--~~~~~-~~~e~~~~~p--~tfDlvh~~~~~ 530 (617)
.+|+||||.|.|...||.++=.+ |+.+++. ...++.+.+.|+ +-++. |-.+-+..++ ++.|-|+- -|
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 59999999999999999763211 3444432 355556666666 33332 2222234343 48888864 23
Q ss_pred hhhh------hcCCCcccchhhccccccCcceEEEecChh-HHHH-HHHhhhh
Q 007128 531 SDIE------KRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDF-VKKYLRA 575 (617)
Q Consensus 531 ~~~~------~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~-~~~~~~~ 575 (617)
++=+ +.|=--...|.++.|+|+|||.|.+..+.+ ..+. +...+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3111 233333578999999999999997776655 4444 4444444
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.031 Score=59.68 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+=+|.|.|+..++.. .|+++|+.|..+.-.+ +.++.+++. +....+|....+..-+.||-|++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~--- 264 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL--- 264 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC---
Confidence 479999999999999998875 3889999997766555 344444443 4566788887776657899998653
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
......++..+.+.+++||.+-+-........+. .....+.......|+
T Consensus 265 --p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 --PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGY 313 (341)
T ss_pred --CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccC
Confidence 2222457888899999999988754333222111 112556666666655
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.0044 Score=62.33 Aligned_cols=114 Identities=19% Similarity=0.303 Sum_probs=69.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe-eccc--------------ccchhhhhhhcccCC----cc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY-DRGL--------------IGSIHNWCEAYSTYP----RT 520 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~-~rgl--------------~~~~~~~~e~~~~~p----~t 520 (617)
.||+-|||.|.-+.+|+++|. +|+.+|. +..++.++ ++++ .+.+.-+|.+|-.++ +.
T Consensus 40 rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp EEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred eEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 599999999999999999997 5666663 33333332 2222 112223444544443 56
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcce--EEEecChh----------HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGF--VIIRDKQS----------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~--~ii~~~~~----------~~~~~~~~~~~~~w~~ 580 (617)
||+|.=...|.-+. ...-.+...-|.++|||||. ++.-+... ..++|++++. -+|++
T Consensus 117 fD~iyDr~~l~Alp--p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i 185 (218)
T PF05724_consen 117 FDLIYDRTFLCALP--PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEI 185 (218)
T ss_dssp EEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEE
T ss_pred ceEEEEecccccCC--HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEE
Confidence 99997444454332 11345777889999999999 43333221 4567888887 56665
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.024 Score=60.28 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=53.2
Q ss_pred ceeEEEeecccccccccccccch--hhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSSD--VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~~--V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
++.++|||||++|.|+..|.+++ |++||..+-+- .......+.....|..+...+.+.+|+|+|-.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 45799999999999999999875 88888655221 111223455555554443322578999998643
Q ss_pred ccccceEEEEecccccCC
Q 007128 292 LQRDGILLLELDRLLRPG 309 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPG 309 (617)
..+.++..-+.+.|..|
T Consensus 280 -e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -EKPARVAELMAQWLVNG 296 (357)
T ss_pred -cCHHHHHHHHHHHHhcC
Confidence 22334555566666554
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.0078 Score=60.61 Aligned_cols=44 Identities=9% Similarity=0.334 Sum_probs=32.6
Q ss_pred cchhhhhhhhhhh--hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 519 RTYDLLHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 519 ~tfDlvh~~~~~~--~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+-||+|.|-++=. ||--+.-.+...+..+.|.|+|||++|+--.
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 7899988865543 4433334566888999999999999998544
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.0043 Score=60.69 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=68.9
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~ 251 (617)
|..+..|.+. ......+..-+.+.++|.. ..-.+.++||+-||+|.++...+.++ |+.+|.++..+...+
T Consensus 10 gr~l~~p~~~-~~RPT~drvrealFniL~~------~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~ 82 (183)
T PF03602_consen 10 GRKLKTPKGD-NTRPTTDRVREALFNILQP------RNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK 82 (183)
T ss_dssp T-EEE-TT---TS-SSSHHHHHHHHHHHHC------H-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH
T ss_pred CCEecCCCCC-CcCCCcHHHHHHHHHHhcc------cccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 3445555442 2223334555667777764 10123689999999999999888774 778888775544333
Q ss_pred hHHHHHhCCC--ccccccccc-ccC---CCCCcccccccccccccccccc--ceEEEEec--ccccCCceeeecC
Q 007128 252 IQFALERGIP--AYLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQRD--GILLLELD--RLLRPGGYFAYSS 316 (617)
Q Consensus 252 ~~~a~~rg~~--~~~~~~d~~-~lp---f~~~sFDlV~~s~~l~h~~~~~--~~~L~el~--RvLrPGG~lvis~ 316 (617)
+....-+.. ..+...|+. .++ -....||+|++.- ++.... ..++..+. .+|+++|.+++-.
T Consensus 83 -~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 83 -KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 233333332 344444532 221 2457899998642 222111 23444444 7888999998853
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.019 Score=62.01 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=38.5
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTK 270 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~ 270 (617)
+|||+=||.|.++..|++. .|+|+++++.++..|+ +.|..+++ ++.|..++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeecc
Confidence 6999999999999999885 6999999998888887 45555555 4666655544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.015 Score=63.19 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=61.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh---cc-cCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA---YS-TYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~---~~-~~p~tfDlvh~~~~~ 530 (617)
++|||++||+|.|+..|+.++. .|+.+|. +.+++.|.+. |+ ..+...+.+ +. .....||+|..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 4799999999999999998765 4556663 4444444332 22 111111111 11 111458888763
Q ss_pred hhhhhcCCCcc-cchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 531 SDIEKRGCSGE-DLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~-~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
.+|..+. .++..+. -++|++.++++..+..+.+ ++.+ -+|+.
T Consensus 308 ----PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l 351 (374)
T TIGR02085 308 ----PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQI 351 (374)
T ss_pred ----CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceE
Confidence 1333322 3333333 4799999999998886554 5555 35765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.019 Score=62.05 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred CceeEEEeecccccccccccccc-----h-hhhhccCCCccchhhhHHHHHhCCC-cccccccccccC---CCCCccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS-----D-VITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLP---YPSRSFELA 282 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~-----~-V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lp---f~~~sFDlV 282 (617)
.++.+|||+.++.|.=+.+|++. . |+++|+++.-+..-. ....+-|+. +.....|...++ ...+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 34489999999999766666654 2 588888885544433 334444554 455566655543 222359999
Q ss_pred ccc-----ccccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 283 HCS-----RCRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 283 ~~s-----~~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
++- ...++-.++ ...+|..+.++|||||.|+.++=...+...+ +.+..++++.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE-----~vV~~~L~~~ 307 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE-----EVVERFLERH 307 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH-----HHHHHHHHhC
Confidence 752 111211010 0248888999999999999987555444333 3355555543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.009 Score=59.55 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred ccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHH--HHH---
Q 007128 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQF--ALE--- 257 (617)
Q Consensus 187 F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~--a~~--- 257 (617)
|..........+.+.+.. . +....+|||||.|......+-. ..+|+++.+.-...+.... ..+
T Consensus 23 YGEi~~~~~~~il~~~~l------~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~ 94 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL------T--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK 94 (205)
T ss_dssp GGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHhCC------C--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 333334444555555554 3 2368999999999765544422 3778888774333332111 111
Q ss_pred -hCC---CcccccccccccCCCC---CccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 258 -RGI---PAYLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 258 -rg~---~~~~~~~d~~~lpf~~---~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+. ++.+..+|....++.. ..-|+|++++.. +.++....|.++..-||+|-+++-+
T Consensus 95 ~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 95 HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred HhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 121 2344455544332211 246889887653 3344344567777888888777643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.013 Score=61.01 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHH--------HHHHHHHHHHHHHHhhhhhhhcc
Q 007128 277 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE--------DLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~--------~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
++||+|+..+ ++.-..+.-.+|..+..+|+|||+++=.+|-.|+.... ..-..+++.+++...||+++..+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699997653 23323333458889999999999999888877765441 11224889999999999887654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.023 Score=59.69 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=37.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
..+||.+||.|..+..+++. .|+|+|.++.++..++..... .-++.+...+...
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~ 79 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSN 79 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHH
Confidence 58999999999999988865 489999999877766533322 2234445444443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.013 Score=58.02 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=59.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDlV 282 (617)
.+|+|+|+-+|+|+..+++. .|+++|+.|.+.... +.+.++|+..-+ +....+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~-----------V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG-----------VIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC-----------ceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 78999999999999988765 389999988654332 444555544322 333457999
Q ss_pred cccccc---ccccccc-------ceEEEEecccccCCceeeecChhh
Q 007128 283 HCSRCR---IDWLQRD-------GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 283 ~~s~~l---~h~~~~~-------~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+|-.+- -++..+. ..++.-+..+|+|||.+++..+..
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 864221 1111110 125556677999999999975443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.014 Score=62.44 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------c--------ccchhhhhhhcccCCcc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------L--------IGSIHNWCEAYSTYPRT 520 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------l--------~~~~~~~~e~~~~~p~t 520 (617)
.+.++||-+|+|.|+.+..+++. ++ ..|+.++. ++.++++.+.- + ++.--.+- ..-++.
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCC
Confidence 35678999999999999988775 34 24444443 44444443221 0 11111211 122478
Q ss_pred hhhhhhhhhhhhhhhcCCC---cccchh-hccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCS---GEDLLL-EMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~---~~~~l~-Em~RiLrPgG~~ii~~ 561 (617)
||+|.++. +.......|. -...+. .+.|.|+|||.+++..
T Consensus 177 yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999763 2101000010 123555 7899999999998753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.0052 Score=56.96 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=55.6
Q ss_pred hhHHHhhhcchh-hHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGS-FAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~-fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
+.|||||||+|. +|..|++.|. .|+.+|. ++.++.+.++++-...-|+.++=...=..+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 569999999996 9999999887 6667774 55566666666533333433221110033444332
Q ss_pred CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
||-+.+....+.+++++++=+.+
T Consensus 84 ---------------------irpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 84 ---------------------IRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred ---------------------eCCCHHHHHHHHHHHHHcCCCEE
Confidence 45567777778888888877763
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.004 Score=65.06 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC---cccccccccc-cC-C-CCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKR-LP-Y-PSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~-lp-f-~~~sFDlV~~s~ 286 (617)
++|||+=|=||.|+.+.+.. .|+.+|.|...++.++.+.+. ++++ +.+...|+.. +. . ..+.||+|++.-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 68999999999999876654 489999999888888754443 4443 4566666543 21 1 246899999742
Q ss_pred cc-----cccccccceEEEEecccccCCceeeecC
Q 007128 287 CR-----IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l-----~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
-. .....+...++..+.++|+|||++++++
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 11 1111222347778889999999988764
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.0081 Score=58.13 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=56.2
Q ss_pred hHHHHHHHHH--HHHHhhcc---ccCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEE---Eeec----
Q 007128 435 DTESWRNRVD--SYWNLLSP---KIQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKL---IYDR---- 501 (617)
Q Consensus 435 D~~~Wk~~V~--~y~~~l~~---~i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~---~~~r---- 501 (617)
....|...+- .|...... ......-++||++|||+|-.+.+++.. +. ..|+..|.+..++. ..++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSL 94 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhcccc
Confidence 4567765443 55543210 012234457999999999544444443 11 12333332212111 1111
Q ss_pred --c-cccchhhhhhhc--ccC-CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 502 --G-LIGSIHNWCEAY--STY-PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 502 --g-l~~~~~~~~e~~--~~~-p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+ +-....+|.++. ... ++.||+|.+..++-.-. ..+.++.=++++|+|+|.+++..+.
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~----~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEE----LFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GG----GHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchHH----HHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 1 123445887643 222 27899999877765322 3456777788999999998887764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.046 Score=56.44 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=48.0
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT 269 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~ 269 (617)
....+.+.+.+.. . +...|||||+|+|.++..|++. .++++++++.....-...+. ...++.+...|+
T Consensus 16 ~~~~~~Iv~~~~~------~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL------S--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC------G--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC------C--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecch
Confidence 4566777777765 2 3368999999999999999876 58888887744322221111 233566666676
Q ss_pred cccCCC
Q 007128 270 KRLPYP 275 (617)
Q Consensus 270 ~~lpf~ 275 (617)
..+...
T Consensus 86 l~~~~~ 91 (262)
T PF00398_consen 86 LKWDLY 91 (262)
T ss_dssp TTSCGG
T ss_pred hccccH
Confidence 665544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.0089 Score=61.61 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=41.2
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCC-cchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYP-RTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++-- .+.+.-.+.++..++ ..||.|.++.=+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCc
Confidence 35799999999999999999865 4555563 455555544311 122222223333333 457888765433
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.016 Score=55.57 Aligned_cols=68 Identities=24% Similarity=0.261 Sum_probs=44.6
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC--CCCCc-ccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP--YPSRS-FELAHCS 285 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp--f~~~s-FDlV~~s 285 (617)
.|+|+.||.|..+..++.. .|+++|+++..+.-++ ..|.--|+ ++.+..+|...+. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999886 5999999997776666 45665565 4677778865542 22122 8999876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.024 Score=58.68 Aligned_cols=132 Identities=21% Similarity=0.321 Sum_probs=81.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch----hhHhhhcCCce----EEEEeecCCC-CCce----E
Q 007128 430 EMFEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG----SFAAALKEKDV----WVMSVVPEDG-PNTL----K 496 (617)
Q Consensus 430 e~F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G----~fa~~L~~~~~----~v~~v~~~~~-~~~l----~ 496 (617)
..|--+.+.|....+.-...|-. -..++.-+|.-+||++| ++|..|.+... +...|.+.|. ...| .
T Consensus 69 T~FFR~~~~f~~l~~~v~p~l~~-~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 69 TEFFRDPEHFEELRDEVLPELVK-RKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred chhccCcHHHHHHHHHHHHHHHh-hccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 34555666665544432221111 01124556999999999 67777766542 3457777774 2332 3
Q ss_pred EEee-----cccc-------------c--------------chhhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccch
Q 007128 497 LIYD-----RGLI-------------G--------------SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLL 544 (617)
Q Consensus 497 ~~~~-----rgl~-------------~--------------~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l 544 (617)
-+|. +|+. | ..|+...+-+ +++-||+|.|-.|+-++... .-..++
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~--~q~~il 224 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE--TQERIL 224 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH--HHHHHH
Confidence 3344 4441 1 1233222211 56889999999999877422 456899
Q ss_pred hhccccccCcceEEEecChhH
Q 007128 545 LEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 545 ~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..+...|+|||++++=++..+
T Consensus 225 ~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 225 RRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHHHHHhCCCCEEEEccCccc
Confidence 999999999999999888654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.031 Score=59.05 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=52.1
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccCCC-CCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLPYP-SRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lpf~-~~sFDlV~~s~ 286 (617)
.+|||+|.|+|.-+..+-.- .++.++.++ .+...-...+..-.. +..-......+++++ ...|++|+...
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56999999998655444321 233334333 111111111111111 001111112344544 35688887766
Q ss_pred ccccccccc--ceEEEEecccccCCceeeecChh
Q 007128 287 CRIDWLQRD--GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 287 ~l~h~~~~~--~~~L~el~RvLrPGG~lvis~p~ 318 (617)
-+++..... ...++.+..+++|||.|+|..+.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 555432221 12677888999999999997543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.062 Score=52.58 Aligned_cols=131 Identities=22% Similarity=0.210 Sum_probs=73.3
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~ 251 (617)
+..+.+|.+. ......++.-+.+.+++... .-.+.++||+=+|+|.++...+.++ ++.+|.+.......+
T Consensus 11 gr~L~~p~~~-~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 11 GRKLKTPDGP-GTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCcccCCCCC-CcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 4445555542 22233344556666766531 1234689999999999999988874 777777765444333
Q ss_pred hHHHHHhC--CCccccccccccc-CCCCC--cccccccccccccccccc---ce--EEEEecccccCCceeeecC
Q 007128 252 IQFALERG--IPAYLGVLGTKRL-PYPSR--SFELAHCSRCRIDWLQRD---GI--LLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 252 ~~~a~~rg--~~~~~~~~d~~~l-pf~~~--sFDlV~~s~~l~h~~~~~---~~--~L~el~RvLrPGG~lvis~ 316 (617)
+....-+ ..+.+...|+... +-... .||+|+..-- +.... .. .+.+-..+|+|+|.+++-.
T Consensus 84 -~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP---y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 84 -ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP---YAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred -HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC---CccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 2222223 3455555565432 22222 4999985422 11110 11 1222457799999999953
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.013 Score=58.06 Aligned_cols=95 Identities=7% Similarity=0.021 Sum_probs=48.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..++.++. -.|+.++. +..++.+.+. |+ +-.++ |..+.+......||+|.++==|.
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 699999999999985444432 13444443 2332222111 11 11111 22222221225699998743321
Q ss_pred hhhcCCC-cccchhhc--cccccCcceEEEecCh
Q 007128 533 IEKRGCS-GEDLLLEM--DRILRPTGFVIIRDKQ 563 (617)
Q Consensus 533 ~~~~~c~-~~~~l~Em--~RiLrPgG~~ii~~~~ 563 (617)
.. .+.++.-+ ..+|+|+|.+++....
T Consensus 133 -----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 -----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 12233322 3468999999999775
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.05 Score=57.01 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=38.7
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..||+|.|..||.|+... ....++..+.+.|+|||++++-+....
T Consensus 222 ~~fD~I~cRNvliyF~~~--~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDKT--TQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred CCcceeeHhhHHhcCCHH--HHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 899999999999988422 567899999999999999999887543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.011 Score=61.35 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR 501 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r 501 (617)
..|||+|||+|.++..|++++. .|+.+|. +.|++.+.++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 4699999999999999999865 5666774 6777766554
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.051 Score=55.97 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhccccc
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~ 580 (617)
.|+.||+|.+...+...-...-....++..|-+.|||||.||+..-.. ..+.|++.++..+.++
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEE
Confidence 456799987666555332222234589999999999999999876543 4567999999999987
Q ss_pred ccccccCCCCCCCCCCeEEEEEEe
Q 007128 581 VATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+ ... .....-..+...+|+|||
T Consensus 235 ~-~~~-~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 235 E-DLE-KQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp E-EEE-G-TTTB---EEEEEEEEE
T ss_pred E-ecc-cccCcCCCCcEEEEEEeC
Confidence 4 222 112333356677888887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.012 Score=59.06 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=61.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh--hhhhhccc-CCc
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH--NWCEAYST-YPR 519 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~--~~~e~~~~-~p~ 519 (617)
+...+-++||.+|.+.|--|.+|+.. +. -++.++. +++.++|++- |+ |-.+. ++-+-++. ...
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g---~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~ 131 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDG---RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDG 131 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCC---eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCC
Confidence 34457788999999999888888742 33 2444442 4444444322 33 22222 55555663 569
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+||+|..+.- .-+....+.+.-+.|||||.+|+.+
T Consensus 132 ~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 132 SFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred CccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 9999985222 2245677888889999999997754
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.3 Score=48.60 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=69.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---c--eEEEEeecCCCCCceEEEeecccc---cchhhhhhhcccCCcchhhhhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEK---D--VWVMSVVPEDGPNTLKLIYDRGLI---GSIHNWCEAYSTYPRTYDLLHAWTVF- 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~--~~v~~v~~~~~~~~l~~~~~rgl~---~~~~~~~e~~~~~p~tfDlvh~~~~~- 530 (617)
..|+|+||-+||.+-.++++ + +....|.|++....+..+ +|-+ .......+.+.. ..+|+|.++..=
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~l~~--~~~DvV~sD~ap~ 122 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEALGG--APVDVVLSDMAPN 122 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHHcCC--CCcceEEecCCCC
Confidence 35999999999998877654 2 344555555532223332 2321 122222333333 446777532221
Q ss_pred -------hhhhhcCCCcccchhhcc-ccccCcceEEEecChh-----HHHHHHHhhhhcccccccccccCCCCCCCCCCe
Q 007128 531 -------SDIEKRGCSGEDLLLEMD-RILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEAVATTADASSDSDKDGDE 597 (617)
Q Consensus 531 -------~~~~~~~c~~~~~l~Em~-RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 597 (617)
.|... -.+..+..||. ++|+|||.|++..... .+..++.....+.=... +.- -+.+.|
T Consensus 123 ~~g~~~~Dh~r~--~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP------~aS-R~~S~E 193 (205)
T COG0293 123 TSGNRSVDHARS--MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKP------KAS-RKRSRE 193 (205)
T ss_pred cCCCccccHHHH--HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecC------ccc-cCCCce
Confidence 11100 01234555555 4999999999987654 45555555554433221 111 123458
Q ss_pred EEEEEEe
Q 007128 598 VVFIVQK 604 (617)
Q Consensus 598 ~~l~~~K 604 (617)
-+++|.+
T Consensus 194 ~y~v~~~ 200 (205)
T COG0293 194 IYLVAKG 200 (205)
T ss_pred EEEEEec
Confidence 8888865
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.016 Score=59.35 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=61.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEe----eccc---ccchh-hhhh-hcc-cCCcc
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIY----DRGL---IGSIH-NWCE-AYS-TYPRT 520 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~----~rgl---~~~~~-~~~e-~~~-~~p~t 520 (617)
|..|. .||+.|.|+|+++.+|+.. ...|.+..-- ++..+.|. +-|+ +...| |.|+ -|. ...+.
T Consensus 38 i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~--~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 38 IRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFR--EDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp --TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred CCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccC--HHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 44444 5999999999999999853 2334333322 22222222 2244 23333 5663 342 12356
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccc-cCcceEEEecC-hhHHHHHHHhhhhcccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRIL-RPTGFVIIRDK-QSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiL-rPgG~~ii~~~-~~~~~~~~~~~~~~~w~~~ 581 (617)
||.|. -++. ++-.+|.-+.++| ||||.+++-.+ .+-+.++-..++..+|..|
T Consensus 114 ~Davf-----LDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 114 FDAVF-----LDLP----DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEEE-----EESS----SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred ccEEE-----EeCC----CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 67655 3444 6677888888999 99999976654 3333344444555577665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.029 Score=56.21 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=73.7
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccccccccc---CCCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL---PYPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l---pf~~~sFDlV~~s 285 (617)
++.+||-+|+.+|+...++.+- .|.++++|+..... .+..|.+|. ++.-...|+..- ..--+..|+|++.
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rd-L~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRD-LLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH-HHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHH-HHHHhccCC-ceeeeeccCCChHHhhcccccccEEEec
Confidence 3479999999999888887652 48899999955433 335666653 433233444321 1112478999854
Q ss_pred ccccccccccceEEEEecccccCCceeeecChhh--hc-CCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA--YA-QDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~--~~-~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
-+ -.+....++.++...||+||+++++.... .. ..+ ...|.+-.+.++..+|+..
T Consensus 151 Va---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP--EEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--HHHHHHHHHHHHCTTCEEE
T ss_pred CC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--HHHHHHHHHHHHHcCCChh
Confidence 22 22332457788889999999999875332 21 222 2346555556666677654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.044 Score=54.27 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=33.1
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhH
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~ 565 (617)
..||+|.|-.|+-++... ....++.-+.+.|+|||++++-.....
T Consensus 135 ~~fD~I~CRNVlIYF~~~--~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 135 GRFDLIFCRNVLIYFDPE--TQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp --EEEEEE-SSGGGS-HH--HHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred CCccEEEecCEEEEeCHH--HHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 999999999999987532 446899999999999999999888643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.069 Score=55.36 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=41.6
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh-----h-----------HHHHHHHhhhhcccccc
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----S-----------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----~-----------~~~~~~~~~~~~~w~~~ 581 (617)
++||.|...-...-.+ ++.+.|..|.++|||||+.|=--|. + ..++|+.+++.++|+.+
T Consensus 164 ~~~d~VvT~FFIDTA~----Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 164 GSFDVVVTCFFIDTAE----NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CcccEEEEEEEeechH----HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 4889876432222122 6677888999999999976522211 1 47899999999999985
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.013 Score=55.51 Aligned_cols=74 Identities=19% Similarity=0.396 Sum_probs=50.9
Q ss_pred CCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhccC-ceEE
Q 007128 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKRN-QTVV 353 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~~-~~~i 353 (617)
..++||+|+|+.|++ +.+.-..+++.+.+.|+|.|..++..|..... .+.+.+.....||.+.-.++ +..+
T Consensus 100 eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s-------L~kF~de~~~~gf~v~l~enyde~i 171 (201)
T KOG3201|consen 100 EQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQS-------LQKFLDEVGTVGFTVCLEENYDEAI 171 (201)
T ss_pred hhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecCcccch-------HHHHHHHHHhceeEEEecccHhHHH
Confidence 346899999999964 44443568889999999999988876654322 34566667777887654443 3445
Q ss_pred Eec
Q 007128 354 WQK 356 (617)
Q Consensus 354 w~k 356 (617)
|++
T Consensus 172 wqr 174 (201)
T KOG3201|consen 172 WQR 174 (201)
T ss_pred HHH
Confidence 654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.084 Score=56.27 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=68.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccch---hhhhhhcccCC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSI---HNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~---~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
+|||==||||||.....=.|. ++...|. ..|+.-|.. .| +-.+ ..|......++ ++||.|.++-=.-
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~-Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKI-NLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhh-hhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 499999999999877666666 6777775 566554322 22 1111 12222222255 5699987532111
Q ss_pred hhh-hcCC----CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 532 DIE-KRGC----SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~-~~~c----~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
... ...- -..++|.++.++|++||++++--+...++++.+ +.|+++
T Consensus 276 rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~----~~f~v~ 326 (347)
T COG1041 276 RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE----LGFKVL 326 (347)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh----cCceEE
Confidence 000 0111 135789999999999999999998666655444 455554
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.017 Score=56.92 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=57.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.++||+|||-|-++..|+.. +--|-+.+. ..|......++. +=...+|.+. +=.||+|-|-.++..-.
T Consensus 114 ~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc~--- 183 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRCF--- 183 (288)
T ss_pred eeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhhc---
Confidence 45999999999999888763 112333332 234332223332 2223455411 12399999988887433
Q ss_pred CCcccchhhccccccC-cceEEEe
Q 007128 538 CSGEDLLLEMDRILRP-TGFVIIR 560 (617)
Q Consensus 538 c~~~~~l~Em~RiLrP-gG~~ii~ 560 (617)
++-.+|.++.-+|+| .|.+|+.
T Consensus 184 -~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 -DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -ChHHHHHHHHHHhccCCCcEEEE
Confidence 566899999999999 9998875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.041 Score=58.61 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccccchhhhhhhcccC--CcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~~~~ 537 (617)
..+||+||.+|||+-.|+++|. .|+.+|...|-+...+-+.+-.+.. ..|... ++.+|+|.|+.+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv-------- 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV-------- 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc--------
Confidence 3699999999999999999987 4555664333333333333211111 112111 478999999555
Q ss_pred CCcccchhhccccccCc--ceEEEecC
Q 007128 538 CSGEDLLLEMDRILRPT--GFVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPg--G~~ii~~~ 562 (617)
|.+..++.=|.+.|..| ..+|+.=+
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 34566777777888776 34555433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.072 Score=52.95 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=62.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccch---hhhhccCCCccchhhhHHHHHhCCCccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQIQFALERGIPAYLGVLG 268 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d 268 (617)
..|...+++.+.. ++ .+||.||-|-|.....+.++. -+.++..+. +-+.+...+-...-++.+..+-
T Consensus 88 tpiMha~A~ai~t------kg---grvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~-V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 88 TPIMHALAEAIST------KG---GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPD-VLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hHHHHHHHHHHhh------CC---ceEEEeccchHHHHHHHhhcCCcceEEEecCHH-HHHHHHhcccccccceEEEecc
Confidence 3455666666654 33 599999999998887776652 123344442 2112212221111123322222
Q ss_pred ccc-c-CCCCCccccccccccccccccccceEEEEecccccCCceeee
Q 007128 269 TKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 269 ~~~-l-pf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvi 314 (617)
-++ + .++++.||-|.-. +.-+..++...+.+.+.|+|||+|.+-+
T Consensus 158 WeDvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hHhhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 111 1 2578889999743 2223334444566788999999998876
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.099 Score=56.47 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=59.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc------ccchhhhhhhccc---C---------
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL------IGSIHNWCEAYST---Y--------- 517 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl------~~~~~~~~e~~~~---~--------- 517 (617)
.|||++||+|.|+.+|++... .|+.+|. +.+++.|.+. |+ .+...++...... +
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 399999999999999988644 4566663 4555554433 21 1222222211100 1
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcc-cchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGE-DLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~-~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
...||+|.. ..+|..+. .++ +.+++|++.++|+-.+..+.+ ++.+.+. |+.
T Consensus 277 ~~~~d~v~l-------DPPR~G~~~~~l---~~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l 329 (353)
T TIGR02143 277 SYNCSTIFV-------DPPRAGLDPDTC---KLVQAYERILYISCNPETLKANLEQLSET--HRV 329 (353)
T ss_pred cCCCCEEEE-------CCCCCCCcHHHH---HHHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEE
Confidence 012566553 12343322 232 345669999999988886553 6666555 665
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.22 Score=54.38 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=69.2
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
+.|||+=|-||+|+.+.+..|. .|++|.... ..|+.|.+. |+ .+++-.|-+....=-.+||+|..
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 3699999999999999999888 666665433 333333332 33 23333333222211149999962
Q ss_pred ---------hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhc
Q 007128 527 ---------WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRAL 576 (617)
Q Consensus 527 ---------~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~ 576 (617)
.+.|+-.. +..+++..--+||+|||.++++.... .++.|..-+..+
T Consensus 297 DPPsF~r~k~~~~~~~r----dy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 297 DPPSFARSKKQEFSAQR----DYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred CCcccccCcccchhHHH----HHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 22233222 45578899999999999999987654 344455555555
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.12 Score=55.00 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=74.1
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-------CCCccccccccccc-CCCCCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-------GIPAYLGVLGTKRL-PYPSRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-------g~~~~~~~~d~~~l-pf~~~sFDlV 282 (617)
.++||-+|.|.|.-++.|.+. +|+-+|++|.|++.+....+... ...+.+...|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 478999999999999999875 58889999999887763333222 12234444444332 2234589999
Q ss_pred cccccccccccccc---------eEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 283 HCSRCRIDWLQRDG---------ILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 283 ~~s~~l~h~~~~~~---------~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
+.. ..++.. .+-.-+.|.|+++|.+++..-..+..... |=.+...++++||.
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v----fw~i~aTik~AG~~ 430 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV----FWRIDATIKSAGYR 430 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce----eeeehhHHHhCcce
Confidence 843 222211 13334567889999999965444433321 22345566777764
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.51 Score=47.81 Aligned_cols=121 Identities=16% Similarity=0.258 Sum_probs=71.4
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCccc-ccccccccC---CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYL-GVLGTKRLP---YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~-~~~d~~~lp---f~~~sFDlV~~s~~ 287 (617)
++.+||+|+.||.|+..++++ .|+++|+.-..++. ..+....+.. ...++..+. +. +..|+++|.-+
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvS 153 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVS 153 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEee
Confidence 479999999999999999987 48899886654433 2233222221 122233222 22 26788887655
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhc-------------CCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA-------------QDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~-------------~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
++. ...+|-.+..+|+|+|.++.-.-+... ........-..+.+.+...||...
T Consensus 154 FIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 154 FIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred hhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 332 235777888889998877764322210 011112233667777777777543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.17 Score=54.64 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=54.2
Q ss_pred eEEEeecccccccccccccch-------------------------------------------hhhhccCCCccchhhh
Q 007128 216 RTVLDVGCGVASFGAYLLSSD-------------------------------------------VITMSLAPNDVHQNQI 252 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~-------------------------------------------V~gvDis~~dl~~a~~ 252 (617)
..++|-=||+|+++...+-.. ++|+|+++.++..|+
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 579999999998765443211 559999999998887
Q ss_pred HHHHHhCCC--cccccccccccCCCCCcccccccc
Q 007128 253 QFALERGIP--AYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 253 ~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
..|++.|+. +.|.++|+..++-+-+.+|+|+|+
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 677777876 788899998887554789999987
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.67 E-value=0.091 Score=56.95 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=58.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc------ccchhhhhhhccc---C---------
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL------IGSIHNWCEAYST---Y--------- 517 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl------~~~~~~~~e~~~~---~--------- 517 (617)
.|||++||+|+|+.+|++..- .|+.+|. +.+++.|.+. |+ .+.+.++...+.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 499999999999999987644 3555553 4555444432 22 1222222211110 0
Q ss_pred CcchhhhhhhhhhhhhhhcCCCc-ccchhhccccccCcceEEEecChhHHHH-HHHhhhhccccc
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSG-EDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLRALNWEA 580 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~-~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~~~~w~~ 580 (617)
...||+|.. ..+|-.+ +.++ ..+++|++.++++-.+..+-+ ++.+.+ +|+.
T Consensus 286 ~~~~D~v~l-------DPPR~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l 338 (362)
T PRK05031 286 SYNFSTIFV-------DPPRAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKV 338 (362)
T ss_pred CCCCCEEEE-------CCCCCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEE
Confidence 014787765 1123221 1222 345568999999988876554 666654 6765
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.55 Score=47.32 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=60.4
Q ss_pred CchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccc----cccccccchhhhhccCCCccchhhhHHHHHhCCCcc-
Q 007128 189 YGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVAS----FGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAY- 263 (617)
Q Consensus 189 ~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~----~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~- 263 (617)
.++..|+..++++|....+.+. ++.-++||||.|.-- ++.+.-.-..+|.|+++..++.|+.......++...
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 3567899999999987544443 445789999988763 233333335788888888777776544443233211
Q ss_pred -ccc-cccc----ccCCCCCcccccccccccccc
Q 007128 264 -LGV-LGTK----RLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 264 -~~~-~d~~----~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.. -|.. .+--.++.||++.|+--++..
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchh
Confidence 111 1111 111235789999998764433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.05 Score=55.80 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=27.6
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY 499 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~ 499 (617)
.-..|||+|||+|.++..|+++... |+.+|. +.+++.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILR 68 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHH
Confidence 3457999999999999999987653 444443 45544443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.19 Score=49.06 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=54.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-----CCCcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-----GIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-----g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+.|+|+|+|.++...++. +|++++..|.-. +.|.++ ..++.+.++|+....| ...|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37999999999776555443 688888877432 233333 2356778888888888 368999985310
Q ss_pred cccc-cccceEEEEecccccCCceee
Q 007128 289 IDWL-QRDGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 289 ~h~~-~~~~~~L~el~RvLrPGG~lv 313 (617)
-... ......+..+...||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 0011 111224444444556666554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.16 Score=44.43 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHhhhcchhhHhhhcCC----c-eEEEEeecCCC-CCceEEEeecccccchhhhh----hhcccCC-cchhhhhhhh--h
Q 007128 463 MDMKAHLGSFAAALKEK----D-VWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWC----EAYSTYP-RTYDLLHAWT--V 529 (617)
Q Consensus 463 LD~g~G~G~fa~~L~~~----~-~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~----e~~~~~p-~tfDlvh~~~--~ 529 (617)
|.+|+..|..+..|++. + ..+..|.+... +...+++.+.++-..++-.. +-++.++ ..||+|+-+. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 57898899888777753 2 13445555442 23444444445522222111 2244555 8999998433 3
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.. ....+..+.+.|+|||.+++-|
T Consensus 81 ~~~-------~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 YEA-------VLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHH-------HHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHH-------HHHHHHHHHHHcCCCeEEEEeC
Confidence 332 2345677778999999999876
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.25 Score=45.96 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=30.9
Q ss_pred CceeEEEeeccccccccccccc-----c---hhhhhccCCCccchhh
Q 007128 213 GRLRTVLDVGCGVASFGAYLLS-----S---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~-----~---~V~gvDis~~dl~~a~ 251 (617)
.+..+|+|+|||.|.++..|+. . .|+++|..+..++.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~ 70 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ 70 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH
Confidence 3457899999999999988887 3 5889998887665554
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.66 Score=45.90 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=23.5
Q ss_pred cchhhccccccCcceEEEecCh-hHHHHHHHhhhhc
Q 007128 542 DLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRAL 576 (617)
Q Consensus 542 ~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~ 576 (617)
..|.|..=+||+||.++..... +.-+.|.+.+.+-
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h 199 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH 199 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence 5677888899999999765554 4444455555444
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.039 Score=58.06 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
.|||+|||+|.++..|++.+. .|+.+|. +++++.+.++ |+.+.+.-.+.++..++ ..||+|.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVAN 108 (294)
T ss_pred EEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEec
Confidence 699999999999999998765 4555563 4565555443 22122221222322233 567887764
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.29 Score=46.72 Aligned_cols=51 Identities=10% Similarity=0.331 Sum_probs=38.8
Q ss_pred cccCCcchhhhhhhhhhhhhh----hcCCC---cccchhhccccccCcceEEEecChh
Q 007128 514 YSTYPRTYDLLHAWTVFSDIE----KRGCS---GEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 514 ~~~~p~tfDlvh~~~~~~~~~----~~~c~---~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+-.|.++||.+-|.+++.|.- ...-| -...|+++.|+|||||.+++.-|.-
T Consensus 57 ~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 57 WQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred HHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 346889999999999998743 11111 1378899999999999999998864
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=86.90 E-value=0.12 Score=53.88 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=67.1
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEee--cccccchhh-hhhhc----ccCCcchhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYD--RGLIGSIHN-WCEAY----STYPRTYDLLHAWT 528 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~--rgl~~~~~~-~~e~~----~~~p~tfDlvh~~~ 528 (617)
.-+.|||+|||+|+-.-+..+. + ....++.+|. +.|++++.. +......+. |-..+ ..+ ...|||.+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEeh
Confidence 3456999999999755444432 2 2346667774 566553221 111111111 21111 111 3349999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh-----HHHHHHHhhhhccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~ 580 (617)
++..+.. -....++..|=+.+.+ ++||-++-. .+.++++.+...++.+
T Consensus 111 ~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 111 VLNELPS--AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred hhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 9998863 3445566555454555 888888754 5667777776655554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.19 Score=46.27 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.0
Q ss_pred EEEeecccccccccccccc----hhhhhccCCCccchhh
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~ 251 (617)
++||||||.|.++..++.. .++++|.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999998888754 4888999887666555
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.024 Score=49.79 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=35.6
Q ss_pred Eeecccccccccccccc-------hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc--CCCCCcccccccccc
Q 007128 219 LDVGCGVASFGAYLLSS-------DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL--PYPSRSFELAHCSRC 287 (617)
Q Consensus 219 LDVGCG~G~~~~~L~~~-------~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l--pf~~~sFDlV~~s~~ 287 (617)
||||+..|..+..+++. .++++|..+. .+..+ +..++.+. .+.+..++.... .++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999887777653 3778887773 11111 22222222 355555554322 122568999986532
Q ss_pred ccccccccceEEEEecccccCCceeeec
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|-.......+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22222245678889999999999874
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=86.47 E-value=0.064 Score=55.02 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=52.9
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEE----eeccc---ccchh-hhhhhccc------
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLI----YDRGL---IGSIH-NWCEAYST------ 516 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~----~~rgl---~~~~~-~~~e~~~~------ 516 (617)
+...+-++||++|+++|--|.+|+.. +..+..+... +...++| ..-|+ |-.++ +..+-++.
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc
Confidence 34456778999999999777666642 3444444432 2222222 22243 21111 11122222
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++.+||+|..+.-=. .....+...-+.|||||.+++.+
T Consensus 153 ~~~~fD~iFiDadK~-------~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 153 YHGTFDFIFVDADKD-------NYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cCCcccEEEecCCHH-------HhHHHHHHHHHhcCCCeEEEEcC
Confidence 346899998533211 12234444458999999988764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.43 E-value=0.043 Score=53.56 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=60.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc--cccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG--LIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg--l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.|+|+|||+|.||-..+-.|.. .|..+|. +..++++.+.- +.|.+-..+.+.+.+..-||.|..+==|- .+...
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG-~~~rh 124 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG-SQRRH 124 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc-ccccc
Confidence 4999999999877666655531 2344442 34444443321 34555555667777778888765433333 11122
Q ss_pred CCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
-|.+.++. -|+=.=.++=.+.....+-+++.....+..+
T Consensus 125 aDr~Fl~~----Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 125 ADRPFLLK----ALEISDVVYSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred CCHHHHHH----HHHhhheEEEeeccccHHHHHHHHHhcCCeE
Confidence 34443222 1111223444445556667777777776554
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.14 Score=53.79 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEee----ccc---ccchhhhhhhcccCCcchhhhhh----h
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYD----RGL---IGSIHNWCEAYSTYPRTYDLLHA----W 527 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~----rgl---~~~~~~~~e~~~~~p~tfDlvh~----~ 527 (617)
-|.|||+|||.|.+...-+..|.. .|-++++.+|.+.|.. ..+ |.++-.--|++. .|...|+|.+ +
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccchh
Confidence 455999999999877655555542 3444455556443321 111 334444445554 6788898864 2
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.++. . .+...-+--+|.|+|.|...
T Consensus 255 mL~N----E--RMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVN----E--RMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhh----H--HHHHHHHHHHhhcCCCCccc
Confidence 2222 0 11222233459999999764
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.59 E-value=0.47 Score=46.95 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=75.3
Q ss_pred CceeEEEeecccccccccccccc---h-hhhhccCCCccchhhhHHHHHhCCCcccccccccccC----CCCCccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS---D-VITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----YPSRSFELAHC 284 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~---~-V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----f~~~sFDlV~~ 284 (617)
.++.+||=+|+.+|+...++.+- + +.++++|+.....-. ..+.+|. ++.=...|+. .| +-=+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~-Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRP-NIIPILEDAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCC-CceeeecccC-CcHHhhhhcccccEEEE
Confidence 44579999999999888777652 3 889999997765544 5665553 2222223332 22 11245788874
Q ss_pred cccccccccccceEEEEecccccCCceeeecChhhh-cCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 285 SRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 285 s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.-+ -.+....+..++...|++||+++++..... .........|.+-..-++..+|++.+.
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 321 112223477888999999998887532211 011112344655555556667776543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=85.38 E-value=0.49 Score=49.78 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=46.1
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC--ccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP--AYL 264 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~--~~~ 264 (617)
+..|+..+.++|......+ ...-++||||+|.-.+=-.|. .-.++|.|+++..++.|+....+..++. +.+
T Consensus 82 R~nYi~~i~DlL~~~~~~~---~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGI---PEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHHT--TCGC---S---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred hHHHHHHHHHHhhcccccc---ccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 3578888888887622111 114689999999874332232 2258899999988888875444432443 222
Q ss_pred ccccc-----cccCCCCCcccccccccc
Q 007128 265 GVLGT-----KRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 265 ~~~d~-----~~lpf~~~sFDlV~~s~~ 287 (617)
..... ..+-.+++.||+..|+--
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EEcCCccccchhhhcccceeeEEecCCc
Confidence 21111 112223467999988754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=84.90 E-value=1.2 Score=47.83 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCceeEEEeecccccccccccccch--------------------hhhhccCCCccchhhhHHHHH-----hCCCccc-
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSSD--------------------VITMSLAPNDVHQNQIQFALE-----RGIPAYL- 264 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~~--------------------V~gvDis~~dl~~a~~~~a~~-----rg~~~~~- 264 (617)
...+.-+|+|+||..|..+..+...= |.--|+-.+|-+.-....... ...++..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 34456789999999997776665431 122233333332222111111 1111111
Q ss_pred -ccccccccCCCCCccccccccccccccccccc
Q 007128 265 -GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 296 (617)
Q Consensus 265 -~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~ 296 (617)
.-++...--||+++.|+++++.+ +||....+
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP 124 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYA-LHWLSQVP 124 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES--TTB-SSS-
T ss_pred ecCchhhhccCCCCceEEEEEech-hhhcccCC
Confidence 11233444488999999999987 78987643
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.039 Score=57.75 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=64.6
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-ccccccccccc-C-CCCCccccccc--
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRL-P-YPSRSFELAHC-- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~l-p-f~~~sFDlV~~-- 284 (617)
+.+|||+.++.|.=+.++++. .+++.|++..-+..-. ....+-|+. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 367999999999777666653 4788888775544433 233344554 33333555444 1 23346999975
Q ss_pred --ccc-ccc------cccc----------cceEEEEecccc----cCCceeeecChhhhcCC
Q 007128 285 --SRC-RID------WLQR----------DGILLLELDRLL----RPGGYFAYSSPEAYAQD 323 (617)
Q Consensus 285 --s~~-l~h------~~~~----------~~~~L~el~RvL----rPGG~lvis~p~~~~~~ 323 (617)
+.. .+. |... ...+|..+.+.+ ||||+++.++=...+..
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 211 111 1000 024788899999 99999999875554443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=84.49 E-value=0.14 Score=51.00 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=66.2
Q ss_pred EEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCC-ccccccccccccc
Q 007128 218 VLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSR-SFELAHCSRCRID 290 (617)
Q Consensus 218 VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~-sFDlV~~s~~l~h 290 (617)
|.||||--|.+..+|.+. .++++|+++.-+..|+...+. .++. +.+..+|... +++.+ ..|.|+.+.+-=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 689999999999999986 488999999888877754443 4432 4455555332 22333 3788876542111
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.. ...|.+....++..-.|++. |.. ....+++.+.++||.++++
T Consensus 79 lI---~~ILe~~~~~~~~~~~lILq-P~~---------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 LI---IEILEAGPEKLSSAKRLILQ-PNT---------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HH---HHHHHHTGGGGTT--EEEEE-ESS----------HHHHHHHHHHTTEEEEEE
T ss_pred HH---HHHHHhhHHHhccCCeEEEe-CCC---------ChHHHHHHHHHCCCEEEEe
Confidence 11 12444444555555567664 211 1357889999999977654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=84.46 E-value=1.7 Score=47.52 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
..--||+++.+++|++.+ +||....+.-+..-....--.|.+++.
T Consensus 154 Y~RLfP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~ 198 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIH 198 (386)
T ss_pred cccccCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEec
Confidence 334489999999999988 689876544332111111135666664
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.23 Score=51.29 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=51.6
Q ss_pred ceeEEEeeccccc--cccccccc-----chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----------C--
Q 007128 214 RLRTVLDVGCGVA--SFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----------Y-- 274 (617)
Q Consensus 214 ~~~~VLDVGCG~G--~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----------f-- 274 (617)
..+..||||||-- .....+++ ..|.-+|..|.-+..++.-.+....-...+..+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 3678999999954 33444433 258888999877666653333222112556666654321 0
Q ss_pred CCCccccccccccccccccc---cceEEEEecccccCCceeeecChhh
Q 007128 275 PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 275 ~~~sFDlV~~s~~l~h~~~~---~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+...=+++ ..++||..+ +..++..+...|.||.+|+|+....
T Consensus 148 ~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 148 FDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 012232333 234566544 2458999999999999999985543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.34 E-value=0.45 Score=49.92 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=38.9
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE--------EecChh---------HHHHHHHhhhhcccccc
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI--------IRDKQS---------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i--------i~~~~~---------~~~~~~~~~~~~~w~~~ 581 (617)
++||+|...-...-.+ ++-+.|.-+..+|+|||..| +.|+.. ..+.|..+++.++|+.+
T Consensus 258 ~~~d~VvTcfFIDTa~----NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ 333 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAH----NILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVE 333 (369)
T ss_pred CccceEEEEEEeechH----HHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEE
Confidence 4699986321111111 44456666778999999986 333221 56789999999999985
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.61 E-value=0.16 Score=53.21 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=59.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe------------ecc--cccchhhhhhhcccCC
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY------------DRG--LIGSIHNWCEAYSTYP 518 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~------------~rg--l~~~~~~~~e~~~~~p 518 (617)
+..++.|+||=+|-|.|+.+..+.+.+- +-.++.++. ++.++.++ .|- +|+.--.|-. .++
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~---~~~ 147 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR---DCE 147 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH---hCC
Confidence 4456668999999999999999998752 123333332 23322221 111 1333333333 345
Q ss_pred cchhhhhhhhhhhhhhhcCCC--cccchhhccccccCcceEEEe
Q 007128 519 RTYDLLHAWTVFSDIEKRGCS--GEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~--~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.+||+|..+..=. . .+... =........|.|+|+|.++..
T Consensus 148 ~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 7999998643333 1 01000 135777889999999999998
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=83.45 E-value=0.095 Score=52.56 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEE--EeecCCCCCceEEEeec-ccccchhhhhhhcccCC---cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVM--SVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYP---RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~--~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p---~tfDlvh~~~~~~ 531 (617)
+||-+|+.+|+....+.+- ...|- ...|-...+.+.+|..| .+++.+.|-..+. .|. ...|+|.+
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~~lv~~VDvI~~----- 149 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYRMLVEMVDVIFQ----- 149 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGTTTS--EEEEEE-----
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-HhhcccccccEEEe-----
Confidence 5999999999888777642 22222 22332224666677676 4666666644221 122 45566554
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
++. ..-..+-++.-++..||+||.++|.-... +..+-.+-++.-+++.+ +..+ .||+..+ -.+++
T Consensus 150 DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~-e~i~--LePy~~d-H~~vv 224 (229)
T PF01269_consen 150 DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL-EQIT--LEPYERD-HAMVV 224 (229)
T ss_dssp E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE-EEEE---TTTSTT-EEEEE
T ss_pred cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh-eEec--cCCCCCC-cEEEE
Confidence 332 11133457778889999999999876553 22233334444566766 4555 7775433 34444
Q ss_pred EE
Q 007128 602 VQ 603 (617)
Q Consensus 602 ~~ 603 (617)
++
T Consensus 225 ~~ 226 (229)
T PF01269_consen 225 GR 226 (229)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.23 E-value=0.37 Score=47.35 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=62.3
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC--CC------ceEEEeecccccchhhhhh---hcccCCcchhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG--PN------TLKLIYDRGLIGSIHNWCE---AYSTYPRTYDLLHA 526 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~--~~------~l~~~~~rgl~~~~~~~~e---~~~~~p~tfDlvh~ 526 (617)
+|.|+=-|-|-|++-|... ...|.+++|.+. .. +-..+.|.+. .+..-... .+. -|.-.|++..
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq~~d~~~~ 128 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQKLDLVPT 128 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCCccccccc
Confidence 5999999999999888754 237889998874 11 1112222222 11111111 112 2377777765
Q ss_pred hhhhhhhh---hcCCCcccchhhccccccCcceEEEecChh
Q 007128 527 WTVFSDIE---KRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 527 ~~~~~~~~---~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..+.++ .+--...++-.++.+.|||||.+.+-|.+.
T Consensus 129 ~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 129 AQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred chhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 44444332 122344688999999999999999888765
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=0.63 Score=45.76 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred eeEEEeecccccccccccccc----h-hhhhccCCCcc-----ch-hhhH-HHHHhC-CCcccccccccccCCCCCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----D-VITMSLAPNDV-----HQ-NQIQ-FALERG-IPAYLGVLGTKRLPYPSRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~-V~gvDis~~dl-----~~-a~~~-~a~~rg-~~~~~~~~d~~~lpf~~~sFDl 281 (617)
+.+|+|+=.|.|.|++-+... + |++ +.+.+. .. .+.. .+++.. -++...-.+...++ +.+..|+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~--~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYA--YVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEE--ecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 479999999999999888764 2 332 222222 11 1111 111111 11222211222233 2233444
Q ss_pred ccccc-------cccccccccceEEEEecccccCCceeeecChhhhc---CCHHHHHHH---HHHHHHHHHhhhhhhhc
Q 007128 282 AHCSR-------CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA---QDEEDLRIW---KEMSALVERMCWRIAAK 347 (617)
Q Consensus 282 V~~s~-------~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~---~~~~~~~~w---~~l~~l~~~~gf~~v~~ 347 (617)
+...+ -.+| ......+..++++.|||||.+++.+....+ ........+ ..+.+..+..||++..+
T Consensus 126 ~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 126 VPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 43321 1122 222345788899999999999986433221 111000001 45667778889876543
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.75 E-value=0.1 Score=51.70 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=27.8
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
.-||.||+-. ....+.+||--.|+|||.++|---++
T Consensus 161 a~YDaIhvGA----------aa~~~pq~l~dqL~~gGrllip~~~~ 196 (237)
T KOG1661|consen 161 APYDAIHVGA----------AASELPQELLDQLKPGGRLLIPVGQD 196 (237)
T ss_pred CCcceEEEcc----------CccccHHHHHHhhccCCeEEEeeccc
Confidence 8899999832 34567778888999999998876554
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.34 E-value=1.7 Score=43.99 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=38.1
Q ss_pred ccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCC-----CCCCCCeEEEEEEec
Q 007128 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSD-----SDKDGDEVVFIVQKK 605 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~l~~~K~ 605 (617)
+.++.|+.|||||||.+++--.......+..+++..+|.....++=+|.. -.....|.+++..|.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 46889999999999999864333223445555566555432122211111 112445888888875
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=82.31 E-value=0.12 Score=57.88 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=54.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceE---EEeec-ccccchhhhhh---hc-ccCCcchhhhh----hh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLK---LIYDR-GLIGSIHNWCE---AY-STYPRTYDLLH----AW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~---~~~~r-gl~~~~~~~~e---~~-~~~p~tfDlvh----~~ 527 (617)
.||||.||+||=+..|++.----..|+.+|. ++.++ ...+| |+ .+++-.+. .+ ..+|.+||.|. |+
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 6999999999988888764100013555553 22222 22233 43 22111111 12 23457899997 54
Q ss_pred hh--hhhhhhcCCCc------------ccchhhccccccCcceEEEecC
Q 007128 528 TV--FSDIEKRGCSG------------EDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~--~~~~~~~~c~~------------~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. |.+-+...-.+ ..+|....+.|||||++|.+.=
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 32 22111000000 2678888899999999987643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=81.79 E-value=0.089 Score=52.24 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=44.9
Q ss_pred cCccchhhHHHhhhcchhhHhhhcC--CceEEEEeecCCC-C---CceE-EEeeccc---ccchhhhhhhcccCCcchhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-P---NTLK-LIYDRGL---IGSIHNWCEAYSTYPRTYDL 523 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~---~~l~-~~~~rgl---~~~~~~~~e~~~~~p~tfDl 523 (617)
+..+. .|+||-||.|.|+-.+++ ++.. |.++|. | ..|. -+...++ +-.++.=+..+.. ...||-
T Consensus 99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE
T ss_pred CCcce--EEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 44443 699999999999999987 5553 334342 2 1221 1111122 2222221222222 477886
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
|.+..-- .-...|.+..+++|+||.+-
T Consensus 173 vim~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred EEECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 6552211 12357777889999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=81.35 E-value=0.16 Score=45.32 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=34.8
Q ss_pred hhhhhhhhhhh--hhhhcCCCcccchhhccccccCcceEEEecChh--------HHHHHHHhhhhccccc
Q 007128 521 YDLLHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 521 fDlvh~~~~~~--~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------~~~~~~~~~~~~~w~~ 580 (617)
||+|-|-+|-. |+......+..++.-|.+.|||||.||+--.+- ..+++.+-.+++.+..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 78777765554 443333456788999999999999999965542 2344555555555543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.42 E-value=0.47 Score=50.53 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
..+...+|+|+|.|..+..+..+ .+...|.+. +--++.+-.-+ .|+-|--+..|-+-| .=|+|..--+++|..
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdl---p~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL---PFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHhCCCCceeecCH---HHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCC
Confidence 35777999999999999888764 233233322 22222221111 333444445555544 335888888888876
Q ss_pred hcCCCcccchhhccccccCcceEEEecCh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+. +...+|+-...-|+|||.+|+-|..
T Consensus 251 De--dcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 251 DE--DCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred hH--HHHHHHHHHHHhCCCCCEEEEEecc
Confidence 55 4578999999999999999999883
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.30 E-value=0.58 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEeecccccccccccccc----hhhhhcc
Q 007128 217 TVLDVGCGVASFGAYLLSS----DVITMSL 242 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~----~V~gvDi 242 (617)
.+.|||||.|.+...|+.. -++|++|
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 5899999999999998875 2666655
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.09 E-value=0.83 Score=51.03 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=65.7
Q ss_pred eeEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
...|+-+|+|-|-+.....+. .+++++=.|+.+..-+...-..-.-.+++...|...++-|..+.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 567889999999766554432 366777777655443322222223457778888888886668999998632
Q ss_pred ccccccccc--ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQRD--GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~~--~~~L~el~RvLrPGG~lvis~ 316 (617)
+=-+.++. ...|.-+-+.|||.|+.+=+.
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 11222221 358999999999998877543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-06 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 3e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 5e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 9e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 9e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 9e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 1e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-04 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-04 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 2e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 2e-04 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-04 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 3e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 4e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 5e-04 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 6e-04 |
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 25/159 (15%)
Query: 216 RTVLDVGCGVASFGAYLLS---SDVITMSLAPNDVHQNQIQFALER----GIPAYLGVLG 268
++D+GCG F + S V+ + L+ + A GI L
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE-----KMLARARAAGPDTGITYERADLD 99
Query: 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS---------SPEA 319
+L P SF+LA+ S + +++ L + + L PGG+F +S +
Sbjct: 100 --KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
Query: 320 YAQDEEDLRIWKEMSALVERMCWRIAAKRNQTVVWQKPL 358
+A D E R W LVE + V + +
Sbjct: 157 WAIDAEGRRTWPIDRYLVEGP-RKTDWLAKGVVKHHRTV 194
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 216 RTVLDVGCGVASFGAYLLS---SDVITMSLAPNDVHQNQIQFALER----GIPAYLGVLG 268
+TVLD+GCG Y V+ + D+ + + A + + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAI- 99
Query: 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315
+ + ++ + S + ++ + ++ L+ G F +S
Sbjct: 100 -EDIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 217 TVLDVGCGVASFGAYL--LSSDVITMSLAPNDVHQNQIQFALERGIPAYLG-VLG-TKRL 272
VLDVGCG L + + ++ IQ ERG L + G L
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSL 110
Query: 273 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315
P+ + FE ++W + L E+ R+L+ GY +
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIA 152
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 6/136 (4%)
Query: 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP 275
VLD+G G + + L + L D + ++ A E+G+ + LP+P
Sbjct: 56 CRVLDLGGGTGKW-SLFLQERGFEVVLV--DPSKEMLEVAREKGVKNVVEAKAED-LPFP 111
Query: 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF--AYSSPEAYAQDEEDLRIWKEM 333
S +FE + +++ E+ R+L P G + + Q + W ++
Sbjct: 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQI 171
Query: 334 SALVERMCWRIAAKRN 349
+ ++ +
Sbjct: 172 TRFLKTQTTSVGTTLF 187
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL 272
+TVLD G G + + ++ + + + F+ E + ++L
Sbjct: 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNISKGDIRKL 83
Query: 273 PYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFAYS 315
P+ S + I ++++ + + E+ R+L+PGG +
Sbjct: 84 PFKDESMSFVYSYGT-IFHMRKNDVKEAIDEIKRVLKPGGLACIN 127
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 9e-05
Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 14/136 (10%)
Query: 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER--GIPAYLGVLGTKRL 272
+LDVG G + +L S + + ++ A + + + G + L
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIE-----GLEPATRLVELARQTHPSVTFHHGTI--TDL 96
Query: 273 PYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIW 330
+ + + + + L+ L + GG S + + +
Sbjct: 97 SDSPKRWAGLLAWYS-LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVA 155
Query: 331 KEMSALVERMCWRIAA 346
+ + +
Sbjct: 156 TAYRWPLPELAQALET 171
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 32/134 (23%)
Query: 217 TVLDVGCGVASFGAYLLSSDVITMSLAPN--------DVHQNQIQFALERGIPAYLGVLG 268
+ D+GCG G T+ LA D+ + I+ E + A
Sbjct: 49 KIADIGCGT---GG-------QTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRV 98
Query: 269 T------KRLPYPSRSFEL--AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320
LP+ + +L + + I + E + L+ GG+ A S +
Sbjct: 99 KGITGSMDNLPFQNEELDLIWSEGAIYNIG----FERGMNEWSKYLKKGGFIAVSEASWF 154
Query: 321 AQD--EEDLRIWKE 332
+ E W +
Sbjct: 155 TSERPAEIEDFWMD 168
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP 275
++L+VG G + L + + + + R A + LP+P
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEALPFP 92
Query: 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA 313
SF++ +++++ +LLE R+LRPGG
Sbjct: 93 GESFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 26/177 (14%)
Query: 186 HFHYGADKYIASIANMLNFSNDNINNEGRLR--------TVLDVGCGVASFGAYLLSS-- 235
+H A +I ++ + S + ++ L VLD+GCG L
Sbjct: 16 SWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI 75
Query: 236 DVITMSLAPNDVHQNQIQFALERGIPAYLGVL---GTKRLPYPSRSFELAHCSRCRIDWL 292
+ + + D + + A G + + ++L C+ +
Sbjct: 76 EAVGV-----DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI-CANFALLHQ 129
Query: 293 QRDGILLLELDRLLRPGGYFAYS------SPEAYAQDEEDLRIWKEMSALVERMCWR 343
LL + LL PGG + QD + + + M W
Sbjct: 130 DIIE-LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWY 185
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYL--LSSDVITMSL 242
T+ + +Y + I + + G+ VLD+ CGV F L +V+ +
Sbjct: 12 TYTDINSQEYRSRIETLEPLLMKYMKKRGK---VLDLACGVGGFSFLLEDYGFEVVGV-- 66
Query: 243 APNDVHQNQIQFALERGIPAYLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQRD-GI 297
D+ ++ I+ A E V +L + ++F+ + + +
Sbjct: 67 ---DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQ 123
Query: 298 LLLELDRLLRPGGYFA 313
+ E+ R+L+P G F
Sbjct: 124 VFKEVRRVLKPSGKFI 139
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 28/132 (21%)
Query: 217 TVLDVGCGVASFGAYLLSSDVITMSLAPN--------DVHQNQIQFALERGIPAYLG--- 265
+ D+GCG G TM LA + D I + L
Sbjct: 49 LIADIGCGT---GG-------QTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRV 98
Query: 266 --VLGT-KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ 322
++G+ LP+ + +L S I + L E + L+ GGY A S +
Sbjct: 99 TGIVGSMDDLPFRNEELDLIW-SEGAI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTD 156
Query: 323 D--EEDLRIWKE 332
+ E W +
Sbjct: 157 ERPAEINDFWMD 168
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPY 274
+ D+G G + L + + ++ + Q A+ + + G L
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAE--NLAL 90
Query: 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMS 334
P +S + I E+ R++R G + AQ + +
Sbjct: 91 PDKSVDGVISILA-IHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLW 149
Query: 335 ALVER 339
R
Sbjct: 150 EDALR 154
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 200 NMLNFSNDNINN--EGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALE 257
+ N N N+ + + VLD+GC + GA + + + + + A E
Sbjct: 16 HYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKE 72
Query: 258 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317
+ LG + T +PY F+ ++ L ++ ++ ++ G S P
Sbjct: 73 KLDHVVLGDIETMDMPYEEEQFDCVIFGDV-LEHLFDPWAVIEKVKPYIKQNGVILASIP 131
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 216 RTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271
VLD+GCG + + ++ I+ A +R V + R
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV-----AIKAAAKRYPQVTFCVASSHR 141
Query: 272 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWK 331
LP+ S + I EL R+++PGG+ ++P E I+
Sbjct: 142 LPFSDTSMDAIIR----IYAPC----KAEELARVVKPGGWVITATPGPRHLMELKGLIYN 193
Query: 332 E 332
E
Sbjct: 194 E 194
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 30/143 (20%)
Query: 217 TVLDVGCGVASFGAYLLSSDVITMSLAPN---------DVHQNQIQFALERGIPAYLG-- 265
VL+ GCG+ + T+ LA N D+ ++ A E +
Sbjct: 40 KVLEAGCGIGA----------QTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV 89
Query: 266 --VLGT-KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA-----YSSP 317
+ LP+ SF+ ++ LQ L L ++L+PGG + S
Sbjct: 90 KFLQANIFSLPFEDSSFDHIFVCFV-LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSC 148
Query: 318 EAYAQDEEDLRIWKEMSALVERM 340
+ + ++ + W + + M
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYM 171
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 42/186 (22%)
Query: 183 GGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYL---LSSDV-- 237
G + G + I + + + + VLD+G G+ Y+ +
Sbjct: 32 GENYISSGGLEATKKILSDIELNEN--------SKVLDIGSGLGGGCMYINEKYGAHTHG 83
Query: 238 ITMSLAPNDVHQNQIQFALERGIPAYLG-----VLGTKR-LPYPSRSFELAHCSRCRIDW 291
I + N + A ER +P +F+L + D
Sbjct: 84 IDIC-------SNIVNMANER---VSGNNKIIFEANDILTKEFPENNFDLIYS----RDA 129
Query: 292 LQRDGI-----LLLELDRLLRPGGYFAYS----SPEAYAQDEEDLRIWKEMSALVERMCW 342
+ + L + + L+P G + + + DE + + L+ +
Sbjct: 130 ILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEY 189
Query: 343 RIAAKR 348
Sbjct: 190 ADILTA 195
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 217 TVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLG-----VLG 268
VLDVGCG+ L ++ V +S++ Q+ A R A L
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGISISR-----PQVNQANARATAAGLANRVTFSYA 118
Query: 269 TKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA 313
LP+ SF+ R L E+ R+LRPGG A
Sbjct: 119 DAMDLPFEDASFDAVWALESLHHMPDRGR-ALREMARVLRPGGTVA 163
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 33/150 (22%), Positives = 46/150 (30%), Gaps = 18/150 (12%)
Query: 191 ADKYIASIANMLNFSNDNINNEGRL--------RTVLDVGCGVASFGAYLLSS--DVITM 240
++ Y N+ ND I E RL +LD GCG G YL DV+
Sbjct: 16 SENYAQRWRNLAAAGND-IYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGT 74
Query: 241 SLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIL-- 298
D+ I +A + A V F+L + + +L DG
Sbjct: 75 -----DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPA 129
Query: 299 LLELDRLLRPGGYFAYSSPEAYAQDEEDLR 328
L + R L G D
Sbjct: 130 LANIHRALGADGRAVIGFGAGRGWVFGDFL 159
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 25/146 (17%)
Query: 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK-RL 272
VL+ GCG A D ++ A A + K L
Sbjct: 50 TRVLEAGCGHGPDAARFGPQAARWAAY-----DFSPELLKLARANAPHADVYEWNGKGEL 104
Query: 273 PYPSRS-FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWK 331
P + F L R + L L P +F Y P +
Sbjct: 105 PAGLGAPFGLIVSRRGPTSVIL-------RLPELAAPDAHFLYVGPRLNVPE-------- 149
Query: 332 EMSALVERMCWRIAAKRNQTVVWQKP 357
+ + + W I A+ + +V+ P
Sbjct: 150 -VPERLAAVGWDIVAEDHVSVLAHAP 174
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 34/178 (19%)
Query: 183 GGTHFHYG-------ADKYIASIANMLNFSNDNINNEGRLR---TVLDVGCGVASFGAYL 232
GG H G D+ + + + G L+ LD+G G +L
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFL 100
Query: 233 ---LSSDV--ITMSLAPNDVHQNQIQFALERGIPAYLG-----VLGTKR-LPYPSRSFEL 281
+ + ++ Q + E A L G+ +P S++
Sbjct: 101 VRKFGVSIDCLNIA-------PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 153
Query: 282 --AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP-EAYAQDEEDLRIWKEMSAL 336
+ + + + E R+L+P G A + P + D+ ++ + L
Sbjct: 154 IWSQDAFLHSPDKLK---VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 274
+L + G +L S +V + + + + + Q A E+G+
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQEKGVKITTVQSNLADFDI 90
Query: 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314
+ ++E C + R L ++ + L+PGG F
Sbjct: 91 VADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFIL 129
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 16/121 (13%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 217 TVLDVGCGVASFGAYLL--SSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 274
++D GCG + YLL ++ + + D++ ++ E+ + + + +
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSVITL--SDPKEI 71
Query: 275 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFA---YSSPEAYAQDEEDLRIWK 331
P S + + + ++ E+ R+L+ G + +R+ +
Sbjct: 72 PDNSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDE 130
Query: 332 E 332
+
Sbjct: 131 K 131
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.46 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.44 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.42 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.42 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.41 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.4 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.38 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.38 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.38 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.36 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.35 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.35 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.35 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.35 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.35 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.34 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.34 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.32 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.32 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.31 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.31 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.31 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.31 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.3 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.3 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.29 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.29 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.29 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.29 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.29 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.29 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.29 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.28 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.28 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.27 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.26 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.26 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.25 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.25 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.25 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.24 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.24 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.24 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.23 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.23 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.23 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.22 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.22 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.22 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.22 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.21 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.21 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.21 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.19 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.19 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.19 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.18 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.18 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.18 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.17 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.17 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.16 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.15 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.15 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.15 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.15 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.13 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.13 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.12 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.1 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.1 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.1 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.09 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.09 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.09 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.09 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.09 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.09 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.08 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.08 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.08 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.08 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.08 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.08 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.08 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.07 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.06 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.06 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.06 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.06 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.06 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.05 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.04 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.04 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.04 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.04 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.04 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.04 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.03 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.03 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.03 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.03 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.02 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.02 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.02 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.02 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.01 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.01 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.0 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.0 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.0 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.99 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.98 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.98 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.98 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.98 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.98 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.98 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.98 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.98 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.97 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.97 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.97 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.97 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.97 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.96 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.96 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.96 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.96 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.95 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.95 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.95 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.95 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.95 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.95 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.95 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.95 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.94 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.94 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.94 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.94 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.94 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.93 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.93 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.93 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.93 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.93 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.93 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.93 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.93 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.93 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.93 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.92 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.92 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.92 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.92 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.91 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.91 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.91 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.9 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.9 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.9 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.9 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.89 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.89 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.89 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.89 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.89 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.89 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.89 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.88 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.88 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.88 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.87 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.87 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.87 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.87 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.87 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.86 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.86 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.86 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.85 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.85 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.84 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.83 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.83 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.82 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.82 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.82 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.82 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.82 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.82 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.82 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.81 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.81 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.81 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.81 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.81 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.8 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.8 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.79 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.79 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.79 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.79 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.78 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.78 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.78 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.78 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.77 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.77 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.77 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.77 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.77 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.77 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.76 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.76 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.75 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.75 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.75 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.75 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.75 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.75 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.75 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.75 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.74 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.74 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.74 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.74 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.73 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.73 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.72 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.72 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.72 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.71 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.71 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.71 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.71 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.7 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.7 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.7 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.69 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.69 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.69 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.68 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.68 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.68 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.68 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.68 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.67 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.67 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.67 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.67 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.67 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.66 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.66 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.65 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.65 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.65 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.65 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.63 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.63 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.63 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.63 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.62 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.61 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.61 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.61 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.61 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.61 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.6 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.6 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.6 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.6 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.59 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.59 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.58 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.58 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.57 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.57 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.57 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.57 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.56 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.56 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.56 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.56 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.56 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.56 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.55 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.54 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.54 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.54 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.54 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.53 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.53 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.53 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.52 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.52 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.51 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.51 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.51 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.51 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.51 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.5 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.5 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.5 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.49 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.49 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.49 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.49 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.47 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.47 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.47 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.47 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.46 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.46 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.46 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.45 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.45 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.44 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.44 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.44 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.43 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.43 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.43 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.43 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.43 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.42 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.42 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.42 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.42 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.41 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.4 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.39 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.39 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.39 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.39 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.39 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.38 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.38 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.38 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.37 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.37 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.37 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.37 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.37 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.36 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.36 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.35 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.34 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.34 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.34 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.33 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.33 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.32 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.31 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.31 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.31 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.3 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.3 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.3 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.29 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.29 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.29 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.27 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.25 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.24 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.24 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.24 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.24 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.23 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.23 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.23 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.22 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.22 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.21 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.21 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.2 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.2 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.19 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.19 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.18 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.18 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.17 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.17 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.16 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.14 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.13 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.13 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.12 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.11 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.1 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.09 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.08 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.08 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.07 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.06 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.05 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.04 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.03 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.02 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.01 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.01 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.99 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.98 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.98 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.97 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.97 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.94 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.94 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.93 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.91 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.89 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.87 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.84 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 97.84 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.83 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.82 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.82 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.81 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.81 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.81 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.81 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.81 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.8 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.79 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.79 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.79 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.78 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.77 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.77 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 97.74 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.74 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.71 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.7 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.69 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.69 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.68 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.68 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.67 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.66 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.66 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.64 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 97.64 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.63 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.63 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.62 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.62 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.61 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.59 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.58 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.57 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.55 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.51 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.49 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.46 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.45 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-16 Score=162.85 Aligned_cols=131 Identities=20% Similarity=0.240 Sum_probs=92.2
Q ss_pred cCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHH
Q 007128 180 FPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALE 257 (617)
Q Consensus 180 Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~ 257 (617)
|......|...++.|.+.+.+.|.. ..+...+|||||||+|.++..|++. .|+|+|+|+.|+..++
T Consensus 11 F~~~a~~Y~~~Rp~yp~~l~~~l~~------~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~------ 78 (257)
T 4hg2_A 11 FTPVADAYRAFRPRYPRALFRWLGE------VAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL------ 78 (257)
T ss_dssp ---------CCCCCCCHHHHHHHHH------HSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC------
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHH------hcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh------
Confidence 3333445555555555555554432 1112358999999999999999886 5999999887765543
Q ss_pred hCCCcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCH
Q 007128 258 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE 324 (617)
Q Consensus 258 rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~ 324 (617)
+..++.+.+++++.+|+++++||+|+|+.++ ||.+. ..++.|+.|+|||||+|++.........+
T Consensus 79 ~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~-~~~~~e~~rvLkpgG~l~~~~~~~~~~~~ 143 (257)
T 4hg2_A 79 RHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDL-DRFWAELRRVARPGAVFAAVTYGLTRVDP 143 (257)
T ss_dssp CCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCH-HHHHHHHHHHEEEEEEEEEEEECCCBCCH
T ss_pred hcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhH-HHHHHHHHHHcCCCCEEEEEECCCCCCCH
Confidence 2346788899999999999999999999885 77654 67999999999999999987654444443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-15 Score=148.46 Aligned_cols=112 Identities=16% Similarity=0.278 Sum_probs=88.5
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL 272 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l 272 (617)
+.+.+.+.. . ++.+|||||||+|.++..|++. .|+++|+++.++..++. .+.+.++ ++.+.++|+..+
T Consensus 27 ~~l~~~l~~------~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~l 97 (260)
T 1vl5_A 27 AKLMQIAAL------K--GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQM 97 (260)
T ss_dssp HHHHHHHTC------C--SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CC
T ss_pred HHHHHHhCC------C--CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEEecHHhC
Confidence 455566654 2 3368999999999999988876 58999999988877764 3334443 478889999999
Q ss_pred CCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 273 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 273 pf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
|+++++||+|+|..+++|+ .++..+|.++.|+|||||++++..+
T Consensus 98 ~~~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 98 PFTDERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999999886554 5557899999999999999999743
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-14 Score=144.74 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=103.9
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Cccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~ 266 (617)
....+.+.+.+.. ..+ .+|||||||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..
T Consensus 22 ~~~~~~l~~~~~~------~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~ 92 (256)
T 1nkv_A 22 EEKYATLGRVLRM------KPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIH 92 (256)
T ss_dssp HHHHHHHHHHTCC------CTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHhcCC------CCC--CEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEE
Confidence 4455666666654 333 68999999999999888764 68999999988887773 4444454 478888
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCC--HHHHHH-----------HHHH
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD--EEDLRI-----------WKEM 333 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~--~~~~~~-----------w~~l 333 (617)
+|+..+++ +++||+|+|..+++| ..+...+|+++.|+|||||+++++.+...... ...... ..++
T Consensus 93 ~d~~~~~~-~~~fD~V~~~~~~~~-~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 93 NDAAGYVA-NEKCDVAACVGATWI-AGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGL 170 (256)
T ss_dssp SCCTTCCC-SSCEEEEEEESCGGG-TSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHH
T ss_pred CChHhCCc-CCCCCEEEECCChHh-cCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHH
Confidence 99999988 789999999887544 44557899999999999999999765432111 111111 1567
Q ss_pred HHHHHHhhhhhh
Q 007128 334 SALVERMCWRIA 345 (617)
Q Consensus 334 ~~l~~~~gf~~v 345 (617)
.++++++||+.+
T Consensus 171 ~~~l~~aGf~~~ 182 (256)
T 1nkv_A 171 VGAFDDLGYDVV 182 (256)
T ss_dssp HHHHHTTTBCCC
T ss_pred HHHHHHCCCeeE
Confidence 778888888654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-14 Score=147.67 Aligned_cols=121 Identities=25% Similarity=0.374 Sum_probs=92.5
Q ss_pred CchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccc
Q 007128 189 YGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAY 263 (617)
Q Consensus 189 ~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~ 263 (617)
.......+.+.+.+.. .. +.+|||||||+|.++..+++. .|+++|+++.++..++. .+...++ ++.
T Consensus 44 ~~~~~~~~~l~~~~~~------~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~ 114 (273)
T 3bus_A 44 DATDRLTDEMIALLDV------RS--GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA-RATAAGLANRVT 114 (273)
T ss_dssp HHHHHHHHHHHHHSCC------CT--TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEE
T ss_pred HHHHHHHHHHHHhcCC------CC--CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceE
Confidence 3344455556666654 33 368999999999999988764 68999999988777663 3333444 377
Q ss_pred cccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 264 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 264 ~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+..+|...+|+++++||+|++..++.|+ .+...+|+++.|+|||||+++++++..
T Consensus 115 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 115 FSYADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp EEECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EEECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 8888999999999999999999886554 445789999999999999999986543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-14 Score=143.90 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=99.1
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++. .+...++. +.+..+|+..+|+++++||+|+|..+++
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 368999999999999998875 68999999988877763 44444543 7788899999999999999999998866
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhc--CCHHHHHHH----------HHHHHHHHHhhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYA--QDEEDLRIW----------KEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~--~~~~~~~~w----------~~l~~l~~~~gf~~v~ 346 (617)
|. +...+++++.++|||||+++++++.... ........| .++.++++++||+.+.
T Consensus 126 ~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 126 NI--GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp CC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred hc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 55 4567999999999999999998754322 122222223 5677888888886543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-14 Score=144.59 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=99.1
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++. .+...++. +.+..+|+..+|+++++||+|+|..++.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY 125 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence 468999999999999998875 68999999988877774 33444543 7888999999999999999999998866
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhc--CCHHHHHHH----------HHHHHHHHHhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYA--QDEEDLRIW----------KEMSALVERMCWRIA 345 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~--~~~~~~~~w----------~~l~~l~~~~gf~~v 345 (617)
|+ +...+++++.++|||||+++++++.... ........| .++.++++++||+.+
T Consensus 126 ~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 126 NI--GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp GT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred ec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 55 4577999999999999999998654321 122222233 567888888888665
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-14 Score=138.99 Aligned_cols=129 Identities=10% Similarity=0.139 Sum_probs=97.1
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..|++. .++++|+++.++..++.. +...++ ++.+..+|...+++++++||+|+|..+++|
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN-IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 38999999999999998875 689999999888777643 333343 477888999999999999999999988655
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcC-------------CH--------HHHHHHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ-------------DE--------EDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~-------------~~--------~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
+ .+...+++++.++|||||+++++.+..... .. .....-+++.++++++||+.+.
T Consensus 124 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 124 W-EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred c-cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 5 555789999999999999999964221100 00 0000117788999999997654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-14 Score=148.39 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=106.9
Q ss_pred ccCchhhHHHHHHhHh----cCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhC
Q 007128 187 FHYGADKYIASIANML----NFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERG 259 (617)
Q Consensus 187 F~~~a~~Y~~~l~~lL----~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg 259 (617)
+........+.+.+.+ .. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.. ....+
T Consensus 59 ~~~~~~~~~~~l~~~l~~~~~~------~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~ 129 (297)
T 2o57_A 59 IREASLRTDEWLASELAMTGVL------QR--QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAG 129 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------CT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHT
T ss_pred hHHHHHHHHHHHHHHhhhccCC------CC--CCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcC
Confidence 3334445556666666 43 22 368999999999999998875 589999999888777643 33344
Q ss_pred C--CcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCH--HHHHH------
Q 007128 260 I--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDE--EDLRI------ 329 (617)
Q Consensus 260 ~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~--~~~~~------ 329 (617)
+ ++.+..+|+..+|+++++||+|++..+++|+. +...+|+++.|+|||||+++++++....... .....
T Consensus 130 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (297)
T 2o57_A 130 LADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208 (297)
T ss_dssp CTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC
T ss_pred CCcceEEEEcCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcC
Confidence 4 47788899999999999999999998866654 4578999999999999999998654321110 00111
Q ss_pred -----HHHHHHHHHHhhhhhhh
Q 007128 330 -----WKEMSALVERMCWRIAA 346 (617)
Q Consensus 330 -----w~~l~~l~~~~gf~~v~ 346 (617)
-.++.++++++||+++.
T Consensus 209 ~~~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 209 HDMGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp SSCCCHHHHHHHHHHTTEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCeEEE
Confidence 15567778888886543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-14 Score=144.58 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=93.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++...... .++.+..+|...+|+++++||+|++..+++|+
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 133 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDAILAL 133 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence 468999999999999998875 5889988886665554222111 46778888999999999999999999886655
Q ss_pred c-cccceEEEEecccccCCceeeecChhhhc---CCHHHHHH----------HHHHHHHHHHhhhhhhh
Q 007128 292 L-QRDGILLLELDRLLRPGGYFAYSSPEAYA---QDEEDLRI----------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~-~~~~~~L~el~RvLrPGG~lvis~p~~~~---~~~~~~~~----------w~~l~~l~~~~gf~~v~ 346 (617)
. .+...+++++.|+|||||++++.++.... ........ -+++.++++++||+.+.
T Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 134 SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 2 44467999999999999999998653322 11111100 15677788888886543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-14 Score=138.60 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=92.9
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC-CCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG-IPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg-~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..|++. .++++|+++.++..++ ++. .++.+..+|+..++++ ++||+|+|..++.|+
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-----~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~- 119 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK-----EKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL- 119 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHH-----HHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGS-
T ss_pred CeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHH-----HhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcC-
Confidence 58999999999999999875 5888888876655444 332 2577888899999988 899999999886554
Q ss_pred cccce--EEEEecccccCCceeeecChhhhcCCHH-----------------HHH-----HHHHHHHHHHHhhhhhhhcc
Q 007128 293 QRDGI--LLLELDRLLRPGGYFAYSSPEAYAQDEE-----------------DLR-----IWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 293 ~~~~~--~L~el~RvLrPGG~lvis~p~~~~~~~~-----------------~~~-----~w~~l~~l~~~~gf~~v~~~ 348 (617)
.+... +|+++.|+|||||+++++++........ ... .-+++.++++++||+++...
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 44444 8999999999999999985432111000 000 01678888999999766554
Q ss_pred Cc
Q 007128 349 NQ 350 (617)
Q Consensus 349 ~~ 350 (617)
..
T Consensus 200 ~~ 201 (220)
T 3hnr_A 200 LN 201 (220)
T ss_dssp CS
T ss_pred cc
Confidence 33
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-14 Score=139.22 Aligned_cols=101 Identities=21% Similarity=0.335 Sum_probs=83.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++.. +...++ ++.+..+|+..+|+++++||+|+|..+++|+
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 100 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF-AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF 100 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhc
Confidence 368999999999999988876 589999999888777643 333443 5788888999999999999999999886655
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+...++.++.|+|||||++++.++
T Consensus 101 -~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 101 -SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4557899999999999999999754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-14 Score=138.99 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=98.3
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++.... ..++ ++.+..+|...+++++++||+|+++.++.
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 117 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVN-KLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence 68999999999999888764 48999999988887774443 3343 57888899999999999999999998865
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCC----HHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD----EEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~----~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
|+ .+...+++++.++|||||+++++.+...... ......-+++.+++++.||+.+..
T Consensus 118 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 118 EL-SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp GC-SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred hc-CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 55 4557899999999999999999753322110 000001267889999999986653
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-14 Score=143.55 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=78.4
Q ss_pred eeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||||||+|.++..|+++ .|+|+|+|+.|++.|+.+..... ..++.+.++|+..+|++ .||+|+++.+
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~ 148 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 148 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESC
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeee
Confidence 368999999999998888753 58999999999988875443322 23578888999988875 5999999887
Q ss_pred cccccccc--ceEEEEecccccCCceeeecCh
Q 007128 288 RIDWLQRD--GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 l~h~~~~~--~~~L~el~RvLrPGG~lvis~p 317 (617)
++ +..+. ..+|++++|+|||||+|+++.+
T Consensus 149 l~-~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 149 LQ-FLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GG-GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ee-ecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 54 44332 3589999999999999999743
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-14 Score=143.19 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=80.3
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++.... ..++.+..+|+..+|+++++||+|+|..++.|
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~- 120 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY- 120 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGGG-
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhhh-
Confidence 468999999999999998875 58899988876655542221 34678888999999999999999999987554
Q ss_pred ccccceEEEEecccccCCceeeecCh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
..+...+|+++.++|||||+++++.+
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 45567899999999999999999743
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-14 Score=142.31 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=91.9
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..|++. .|+|+|+++.++..++ ++.. ++.+.++|+..+ +++++||+|+|..+++|+
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~- 116 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQ-----GRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI- 116 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHH-----HHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC-
T ss_pred CcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHH-----HhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh-
Confidence 57999999999999999876 5889988886665544 3322 577788888877 467899999999886554
Q ss_pred cccceEEEEec-ccccCCceeeecChhhhcCCH-----------------HH-H------HHHHHHHHHHHHhhhhhhhc
Q 007128 293 QRDGILLLELD-RLLRPGGYFAYSSPEAYAQDE-----------------ED-L------RIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 293 ~~~~~~L~el~-RvLrPGG~lvis~p~~~~~~~-----------------~~-~------~~w~~l~~l~~~~gf~~v~~ 347 (617)
.++..+|+++. |+|||||+++++++....... .. . ..-+++.++++++||+++..
T Consensus 117 ~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 117 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 45578999999 999999999998755421100 00 0 00167888888889876654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-15 Score=148.47 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=95.2
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..|++. .|+++|+++.++..++.+.... .++.+..+|+..+++++++||+|+|..++.|+
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 171 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence 468999999999999988875 4889999887776655322211 35778888999999988999999999986665
Q ss_pred c-cccceEEEEecccccCCceeeecChhhhcC-------CHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 292 L-QRDGILLLELDRLLRPGGYFAYSSPEAYAQ-------DEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 292 ~-~~~~~~L~el~RvLrPGG~lvis~p~~~~~-------~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
. .+...+|+++.++|||||+++++++..... .......-+++.++++++||+++..
T Consensus 172 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 3 234679999999999999999986422110 0000001167889999999976643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-14 Score=146.60 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=98.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..|+++ .|+++|+++.++..++. .+...++ ++.+..+|+..+|+++++||+|++..++.
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 196 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR-RARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTM 196 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGG
T ss_pred CCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchh
Confidence 468999999999999998875 58999999988877773 4444554 37888999999999999999999998865
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCC---HHHHH----H-------HHHHHHHHHHhhhhhhhc
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD---EEDLR----I-------WKEMSALVERMCWRIAAK 347 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~---~~~~~----~-------w~~l~~l~~~~gf~~v~~ 347 (617)
|+ + ...+|+++.|+|||||++++.++...... ..... . -+++.++++++||+++..
T Consensus 197 ~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 197 YV-D-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp GS-C-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred hC-C-HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 55 3 57899999999999999999764433211 11000 1 166788888888876543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-14 Score=141.71 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=82.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++... ...++ ++.+...|...+++++++||+|++..++.
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 116 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENT-EKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE 116 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence 468999999999999888765 5899999998887776433 33343 57888889999999999999999998855
Q ss_pred ccccccceEEEEecccccCCceeeecCh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
| ..++..+++++.++|||||++++..+
T Consensus 117 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 117 H-LQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp G-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h-cCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 5 45556899999999999999999754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-14 Score=141.53 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=99.6
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
.+.+.+.+.+.. .. +.+|||||||+|.++..|++. .|+|+|+++.++..++ ++. ++.+.+.|+.
T Consensus 21 ~~~~~l~~~~~~------~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~-~~~~~~~d~~ 86 (261)
T 3ege_A 21 RIVNAIINLLNL------PK--GSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-----VHP-QVEWFTGYAE 86 (261)
T ss_dssp HHHHHHHHHHCC------CT--TCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-----CCT-TEEEECCCTT
T ss_pred HHHHHHHHHhCC------CC--CCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-----hcc-CCEEEECchh
Confidence 455666666654 22 368999999999999999875 5899999886665443 222 6788889999
Q ss_pred ccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhc--------CCHHHHHH-------HHHHHH
Q 007128 271 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA--------QDEEDLRI-------WKEMSA 335 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~--------~~~~~~~~-------w~~l~~ 335 (617)
.+|+++++||+|+|..+++|+ .+...+++++.|+|| ||++++.++.... ..+..... -+.+.
T Consensus 87 ~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (261)
T 3ege_A 87 NLALPDKSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN- 163 (261)
T ss_dssp SCCSCTTCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-
T ss_pred hCCCCCCCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-
Confidence 999999999999999886555 555789999999999 9988886544221 11111111 15577
Q ss_pred HHHHhhhhhhh
Q 007128 336 LVERMCWRIAA 346 (617)
Q Consensus 336 l~~~~gf~~v~ 346 (617)
+++++||+.+.
T Consensus 164 ~l~~aGF~~v~ 174 (261)
T 3ege_A 164 LLQENTKRRVE 174 (261)
T ss_dssp HHHHHHCSEEE
T ss_pred HHHHcCCCcee
Confidence 89999996654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-14 Score=140.17 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccccc--CCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL--PYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l--pf~~~sFDlV~~s~~l~h 290 (617)
+.+|||||||+|.++..|++. .|+++|+++.++. .++++ +.+..+|...+ |+++++||+|+|..++.|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~-----~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIK-----FCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHH-----HHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHH-----HHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 368999999999999988876 5788888775544 44433 55667777665 888899999999988655
Q ss_pred ccc-ccceEEEEecccccCCceeeecChhhhcCCHHHHHH-----------HHHHHHHHHHhhhhhh
Q 007128 291 WLQ-RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRI-----------WKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~~-~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~-----------w~~l~~l~~~~gf~~v 345 (617)
+.. +...+++++.|+|||||++++..+........ ... -+++.+++++.||+++
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSL-INFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHH-HHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHH-HHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 542 22579999999999999999986654221110 000 1678889999999754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-14 Score=144.39 Aligned_cols=103 Identities=9% Similarity=0.062 Sum_probs=74.3
Q ss_pred CceeEEEeeccccccccccc----ccc--hh----hhhccCCCccchhhhHHHHHhCC---CcccccccccccC------
Q 007128 213 GRLRTVLDVGCGVASFGAYL----LSS--DV----ITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLP------ 273 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L----~~~--~V----~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lp------ 273 (617)
.+..+|||||||+|.++..+ +.+ ++ +++|+|+.|+..++.+.+...++ ...+..++.+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 44579999999999765433 221 22 89999999988877544432233 2334455555443
Q ss_pred CCCCccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 274 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 274 f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+++++||+|+|+.++ ||.+++..+|++++|+|||||++++..
T Consensus 131 ~~~~~fD~V~~~~~l-~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 131 KELQKWDFIHMIQML-YYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TCCCCEEEEEEESCG-GGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeee-eecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 678899999999985 555666789999999999999999864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-13 Score=136.40 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=88.9
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
.+.+.+.+++.. ...+..+|||||||+|.++..+++. .++++|+++.++..++.. ....+.++.+..+|+.
T Consensus 22 ~~~~~~~~~l~~------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~d~~ 94 (246)
T 1y8c_A 22 KWSDFIIEKCVE------NNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK-FRSQGLKPRLACQDIS 94 (246)
T ss_dssp HHHHHHHHHHHT------TTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH-HHHTTCCCEEECCCGG
T ss_pred HHHHHHHHHHHH------hCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH-HhhcCCCeEEEecccc
Confidence 344555666654 2123368999999999999998876 589999999888777643 3334457788888998
Q ss_pred ccCCCCCccccccccc-cccccc--cccceEEEEecccccCCceeeecCh
Q 007128 271 RLPYPSRSFELAHCSR-CRIDWL--QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~-~l~h~~--~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.++++ ++||+|+|.. ++.|+. .+...+|+++.++|+|||+++++.+
T Consensus 95 ~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 95 NLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 88887 8999999987 765552 3446799999999999999998643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-14 Score=142.93 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=82.3
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC-CCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP-YPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++.. +...++ ++.+..+|...++ +++++||+|+|..++.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQA-AEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 368999999999999999876 589999999888777633 333343 4678888988887 7789999999998855
Q ss_pred ccccccceEEEEecccccCCceeeecChh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|+ .++..+|+++.++|||||++++..+.
T Consensus 148 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 148 WV-ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GC-SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cc-cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 54 55578999999999999999997643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-13 Score=135.94 Aligned_cols=144 Identities=14% Similarity=0.140 Sum_probs=97.3
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLG 268 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d 268 (617)
..|.+.+.+.+.. . +.+|||||||+|..+..+++. .++++|+++.++..++ +.+...+.++.+..++
T Consensus 47 ~~~m~~~a~~~~~------~---G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~ 116 (236)
T 3orh_A 47 TPYMHALAAAASS------K---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGL 116 (236)
T ss_dssp HHHHHHHHHHHTT------T---CEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESC
T ss_pred HHHHHHHHHhhcc------C---CCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeeh
Confidence 4566666666653 2 368999999999999988775 5899999998887776 4455556667777677
Q ss_pred cccc--CCCCCccccccc-----cccccccccccceEEEEecccccCCceeeecChhhh------cCCHHHHHHH-HHHH
Q 007128 269 TKRL--PYPSRSFELAHC-----SRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY------AQDEEDLRIW-KEMS 334 (617)
Q Consensus 269 ~~~l--pf~~~sFDlV~~-----s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~------~~~~~~~~~w-~~l~ 334 (617)
+..+ ++++++||.|++ .....| ..+...++.++.|+|||||+|++...... .+.. ....+ +...
T Consensus 117 a~~~~~~~~~~~FD~i~~D~~~~~~~~~~-~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (236)
T 3orh_A 117 WEDVAPTLPDGHFDGILYDTYPLSEETWH-THQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSD-ITIMFEETQV 194 (236)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTT-THHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSC-HHHHHHHHTH
T ss_pred HHhhcccccccCCceEEEeeeecccchhh-hcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhh-hhhhhHHHHH
Confidence 6543 578889998863 333333 33346799999999999999998542221 0111 11122 4456
Q ss_pred HHHHHhhhhhhhc
Q 007128 335 ALVERMCWRIAAK 347 (617)
Q Consensus 335 ~l~~~~gf~~v~~ 347 (617)
..+.+.||+....
T Consensus 195 ~~L~eaGF~~~~i 207 (236)
T 3orh_A 195 PALLEAGFRRENI 207 (236)
T ss_dssp HHHHHHTCCGGGE
T ss_pred HHHHHcCCeEEEE
Confidence 6677889976543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-14 Score=139.65 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=95.0
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++... ...++.+..+|+..+++++++||+|+|..+++|+ .
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~ 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT-E 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS-S
T ss_pred CeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcChHhhc-c
Confidence 58999999999999999876 5888888876655444221 2345778888999999999999999999886555 5
Q ss_pred ccceEEEEecccccCCceeeecChhhhcCCH--HHHH-----------HHHHHHHHHHHhhhhhhhc
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPEAYAQDE--EDLR-----------IWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~~~~~~~--~~~~-----------~w~~l~~l~~~~gf~~v~~ 347 (617)
+...+++++.++|+|||+++++.+....... .... .-.++.++++++||+++..
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 5568999999999999999997533211100 0000 0157889999999987653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-13 Score=140.72 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=82.4
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||||||+|.++..|++. .|+++|+++.++..++. .+...+.++.+.+.|+..++++ ++||+|+|..++.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~ 100 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLL 100 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHH-HHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhh
Confidence 468999999999999888764 58999999988777663 3333445788889999999885 6999999998755
Q ss_pred ccccccceEEEEecccccCCceeeecChh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
| ..+...+++++.++|||||++++..+.
T Consensus 101 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 101 H-MTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp G-CSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred c-CCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4 455578999999999999999988765
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-14 Score=139.54 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=96.7
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
..+|||||||+|.++..|++. .|+++|+++.++..++.........++.+..+|+..+++++++||+|+|..++.|+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 469999999999999988765 58999999988777764333322334677888888899888899999999886555
Q ss_pred ccc-cceEEEEecccccCCceeeecChhhhc------CCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSSPEAYA------QDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~p~~~~------~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.++ ...+|+++.++|||||+++++++.... ........-+++.++++++||+++..
T Consensus 160 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 160 TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 432 236899999999999999997643221 00000001267888999999976653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-13 Score=136.88 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=78.9
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+..+|||||||+|.++..+++. .++++|+++.++..++.+. ...+ ++.+..+|+..++++ ++||+|+|..++.
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RGNL-KVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CSCT-TEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-ccCC-CEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 3479999999999999988875 5889999887776655322 2222 677888999999888 8999999998866
Q ss_pred ccccccc--eEEEEecccccCCceeeecCh
Q 007128 290 DWLQRDG--ILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~~~~--~~L~el~RvLrPGG~lvis~p 317 (617)
|+ .+.. .+++++.|+|||||+++++++
T Consensus 121 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 121 HL-EDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 55 4333 489999999999999999753
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-13 Score=137.33 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=88.9
Q ss_pred CceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh-CC----------------------------
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER-GI---------------------------- 260 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r-g~---------------------------- 260 (617)
.++.+|||||||+|.++..++.. .|+|+|+|+.++..++.....+. ..
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 34579999999999887776654 49999999999887763321110 00
Q ss_pred Ccc-cccccccc-cCCC---CCccccccccccccccc---cccceEEEEecccccCCceeeecChhh---hcCCH----H
Q 007128 261 PAY-LGVLGTKR-LPYP---SRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFAYSSPEA---YAQDE----E 325 (617)
Q Consensus 261 ~~~-~~~~d~~~-lpf~---~~sFDlV~~s~~l~h~~---~~~~~~L~el~RvLrPGG~lvis~p~~---~~~~~----~ 325 (617)
.+. +.++|+.. .|++ .++||+|+|+.+++|.. ++...+++++.|+|||||+|++++... +.... .
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 111 55667666 3443 57999999999866543 333569999999999999999985221 10000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 007128 326 DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 326 ~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..-.-+++.++++++||+++.
T Consensus 214 ~~~~~~~l~~~l~~aGF~i~~ 234 (263)
T 2a14_A 214 VALEKGEVEQAVLDAGFDIEQ 234 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEE
Confidence 000015788999999997654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-13 Score=131.44 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=96.2
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~- 292 (617)
.+|||||||+|.++..|++. .|+++|+++.++ +.++++..++.+..+|+..+++++++||+|+|..+++|+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQIEGLEPATRLV-----ELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHH-----HHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 58999999999999999876 588888877554 4444555578888899999999999999999998876654
Q ss_pred cccceEEEEecccccCCceeeecChhhhcCCH-------HHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEAYAQDE-------EDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~-------~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
.+...+|+++.++|||||+++++.+....... ......+++.+++++.||+++...
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 24467999999999999999997644321000 000002678899999999876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-13 Score=135.85 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=80.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC------CcccccccccccCCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI------PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~------~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+...|...+++++++||+|++..+
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 110 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAF 110 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcch
Confidence 58999999999999998876 58899998877766652 3333333 457778899999998999999999988
Q ss_pred ccccccccc---eEEEEecccccCCceeeecChhh
Q 007128 288 RIDWLQRDG---ILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 288 l~h~~~~~~---~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+.|+. ++. .+++++.++|||||+++++++..
T Consensus 111 l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 111 LTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp GGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred hhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 65543 334 69999999999999999986543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-14 Score=136.15 Aligned_cols=99 Identities=12% Similarity=-0.027 Sum_probs=77.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHH------------hCCCcccccccccccCCCC-Cccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALE------------RGIPAYLGVLGTKRLPYPS-RSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~------------rg~~~~~~~~d~~~lpf~~-~sFD 280 (617)
.+|||+|||+|..+..|+++ .|+|+|+|+.+++.++.+.... ...++.+.++|+..+++++ ++||
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD 103 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCA 103 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEE
T ss_pred CEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEE
Confidence 68999999999999999876 5999999999888776432210 1346788899999999875 8999
Q ss_pred cccccccccccccc-cceEEEEecccccCCceeee
Q 007128 281 LAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 281 lV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvi 314 (617)
+|++..+++|+..+ ...+++++.|+|||||++++
T Consensus 104 ~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 104 AFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred EEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99987775554322 23589999999999998444
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-13 Score=139.05 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=78.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+..+|...+ +++||+|++..+++
T Consensus 73 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~ 148 (302)
T 3hem_A 73 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFE 148 (302)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGG
T ss_pred cCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHH
Confidence 368999999999999999876 58999999988877764 3344454 367778888766 68999999998866
Q ss_pred ccccc--------cceEEEEecccccCCceeeecCh
Q 007128 290 DWLQR--------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~~--------~~~~L~el~RvLrPGG~lvis~p 317 (617)
|+.++ ...+++++.++|||||++++.++
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 55332 14689999999999999999754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-13 Score=133.48 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=97.4
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
...+.+.+.+.+.. +..+|||||||+|.++..|++. .|+++|+++.++..++. .+...+.++.+..+
T Consensus 46 ~~~~~~~l~~~~~~---------~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~ 115 (236)
T 1zx0_A 46 ETPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKG 115 (236)
T ss_dssp GHHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcCC---------CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEec
Confidence 34555556555432 2368999999999999988764 58999999988877774 34444566788888
Q ss_pred ccccc--CCCCCccccccc-ccccccccc----ccceEEEEecccccCCceeeecChhhhc-----CCHHHHHHH-HHHH
Q 007128 268 GTKRL--PYPSRSFELAHC-SRCRIDWLQ----RDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEEDLRIW-KEMS 334 (617)
Q Consensus 268 d~~~l--pf~~~sFDlV~~-s~~l~h~~~----~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~~~~~w-~~l~ 334 (617)
|...+ |+++++||+|++ .+.+ +... ....+++++.|+|||||+|++....... ........| +...
T Consensus 116 d~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T 1zx0_A 116 LWEDVAPTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV 194 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred CHHHhhcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHH
Confidence 98888 899999999998 4442 2111 1124699999999999999987644320 000111112 3345
Q ss_pred HHHHHhhhhhh
Q 007128 335 ALVERMCWRIA 345 (617)
Q Consensus 335 ~l~~~~gf~~v 345 (617)
..+.+.||...
T Consensus 195 ~~l~~aGF~~~ 205 (236)
T 1zx0_A 195 PALLEAGFRRE 205 (236)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHCCCCCC
Confidence 56778888653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-13 Score=138.39 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=77.9
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++.+. .+.++ ++.+..+|...+| ++||+|+|..++.
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE 140 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCC---CCeeEEEEeCchh
Confidence 368999999999999988843 5899999988777666333 33333 4677778887766 7899999998876
Q ss_pred ccc-cccceEEEEecccccCCceeeecChh
Q 007128 290 DWL-QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 290 h~~-~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|+. .+...+++++.|+|||||++++.++.
T Consensus 141 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 141 HFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 664 34467999999999999999997644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-13 Score=131.08 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=77.7
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC------CcccccccccccCCCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI------PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~------~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+... .++ ++.+..+|+..+++++++||+|+|.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 58999999999999998864 589999999888777644332 222 5678888888888888899999999
Q ss_pred cccccccccc--ceEEEEecccccCCceeeec
Q 007128 286 RCRIDWLQRD--GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 286 ~~l~h~~~~~--~~~L~el~RvLrPGG~lvis 315 (617)
.++.|+ .++ ..+++++.++|||||+++.+
T Consensus 110 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 110 EVIEHL-DENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred HHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 886655 432 47999999999999977664
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-13 Score=145.90 Aligned_cols=132 Identities=20% Similarity=0.197 Sum_probs=98.5
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh----C----CCccccccccccc------CCC
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER----G----IPAYLGVLGTKRL------PYP 275 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r----g----~~~~~~~~d~~~l------pf~ 275 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++.+..... | .++.+..+|+..+ |++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 468999999999988888764 58999999988877764433221 3 4678888898887 899
Q ss_pred CCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHH----HHH----------HHHHHHHHHHhh
Q 007128 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEED----LRI----------WKEMSALVERMC 341 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~----~~~----------w~~l~~l~~~~g 341 (617)
+++||+|+++.++ ++..+...+|+++.|+|||||+|+++++......... ... ++++.+++++.|
T Consensus 164 ~~~fD~V~~~~~l-~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 242 (383)
T 4fsd_A 164 DSSVDIVISNCVC-NLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG 242 (383)
T ss_dssp TTCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT
T ss_pred CCCEEEEEEccch-hcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC
Confidence 9999999998875 4555567899999999999999999754332211110 011 177899999999
Q ss_pred hhhhhc
Q 007128 342 WRIAAK 347 (617)
Q Consensus 342 f~~v~~ 347 (617)
|+.+..
T Consensus 243 F~~v~~ 248 (383)
T 4fsd_A 243 FRDVRL 248 (383)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 976543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-14 Score=136.62 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=91.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+. ++.+..+|+..++ ++++||+|+|+.+++|+..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 68999999999999999876 5888988886665554222 4556677888888 7789999999988666542
Q ss_pred -ccceEEEEecccccCCceeeecChhhhcCCHH------HHHHHHHHHHHHHHhh-hhhhhc
Q 007128 294 -RDGILLLELDRLLRPGGYFAYSSPEAYAQDEE------DLRIWKEMSALVERMC-WRIAAK 347 (617)
Q Consensus 294 -~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~------~~~~w~~l~~l~~~~g-f~~v~~ 347 (617)
+...+|+++.++|||||+++++.+........ ....-+++.++++++| |+++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 34579999999999999999975433211000 0001267889999999 987654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-13 Score=139.14 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=80.9
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC----CCcccccccccccCCCCCccccccccccccc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG----IPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg----~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+|||||||+|.++..|++. .|+++|+++.++..++.+. ...+ .++.+.++|+..+++ +++||+|+|+...+|
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSIN 162 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHT
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccc
Confidence 8999999999999999876 5899999998887776433 3333 457888999999988 689999998766566
Q ss_pred cccc--cceEEEEecccccCCceeeecChhh
Q 007128 291 WLQR--DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~--~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+.++ ...+|+++.++|||||+|++..+..
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 6553 3569999999999999999975443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-13 Score=136.57 Aligned_cols=96 Identities=15% Similarity=0.324 Sum_probs=77.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++ ++..++.+.++|+..+|+ +++||+|++..++ |+..
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l-~~~~ 131 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKAR-----QNYPHLHFDVADARNFRV-DKPLDAVFSNAML-HWVK 131 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHCTTSCEEECCTTTCCC-SSCEEEEEEESCG-GGCS
T ss_pred CEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHH-----hhCCCCEEEECChhhCCc-CCCcCEEEEcchh-hhCc
Confidence 68999999999999988764 5889988886665443 333467788889999987 5799999998874 5555
Q ss_pred ccceEEEEecccccCCceeeecChh
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
++..+|+++.|+|||||++++..+.
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6678999999999999999997654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-13 Score=133.94 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=80.7
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||||||+|.++..+++. .|+++|+++.++..++... .....++.+..+|...+|+++++||+|++..++ |+.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~ 117 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HLV 117 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG-GGC
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCch-hhc
Confidence 468999999999999988875 5889999887776665332 222346788889999999999999999998874 555
Q ss_pred cccceEEEEecccccCCceeeec
Q 007128 293 QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+...++.++.|+|||||++++.
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCcEEEEE
Confidence 55578999999999999999987
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-13 Score=136.22 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=92.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHH-hCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+.... ...++.+.++|+..++ ++++||+|+|..++.++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence 48999999999999998875 5899999998877776433221 1234778888988877 446999999988765553
Q ss_pred c-ccceEEEEecccccCCceeeecChhhhcCCHH--HHHHHHHHHHHHHHhhhhhhh
Q 007128 293 Q-RDGILLLELDRLLRPGGYFAYSSPEAYAQDEE--DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 293 ~-~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~--~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. +...+++++.++|||||++++........... .....+++.++++..||+++.
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 2 33569999999999999999864332111000 000126788999999997654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-13 Score=135.59 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=75.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc-cccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR-CRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~-~l~h~~ 292 (617)
.+|||||||+|.++..|++. .|+++|+++.++.. ++++..++.+..+|+..+++ +++||+|+|.. ++.|+.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAI-----ARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHH-----HHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHH-----HHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 68999999999999999876 48888888765544 44444467788889999888 68999999987 654443
Q ss_pred --cccceEEEEecccccCCceeeecC
Q 007128 293 --QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 293 --~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+...+|+++.++|||||++++..
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 244568999999999999999963
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-13 Score=129.88 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=98.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhc---ccCC-cchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAY---STYP-RTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~---~~~p-~tfDlvh~~~~~~~~~ 534 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.+++.+.....-.+.+ +..+ .+||+|++..++. ..
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~ 129 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQ 129 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SS
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hh
Confidence 5699999999999999999877 5666664 67888887775432222112222 2233 5699999988887 33
Q ss_pred hcCCCcccchhhccccccCcceEEEecChh--------------------------------HHHHHHHhhhhccccccc
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------------------------VVDFVKKYLRALNWEAVA 582 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------------------------~~~~~~~~~~~~~w~~~~ 582 (617)
++..+|.++.|+|||||+++|.+... ..+++.+++++.+++.+
T Consensus 130 ----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~- 204 (227)
T 3e8s_A 130 ----DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV- 204 (227)
T ss_dssp ----CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE-
T ss_pred ----hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE-
Confidence 78899999999999999999987511 46789999999999986
Q ss_pred ccccCCCCCCCCCCeEEEEEEec
Q 007128 583 TTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+.+............+++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 205 SLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEecCCCCCCCCceeEEEEeecC
Confidence 55442222111234677888874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-13 Score=131.37 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=77.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC-CCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG-IPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg-~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++ +.+ .++.+..+|+..+ +++++||+|+|+.+++|+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~-----~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAG-----RHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHG-----GGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-----hcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 58999999999999998876 5888988886665554 344 4577888888887 7889999999998865554
Q ss_pred cc-cceEEEEecccccCCceeeecCh
Q 007128 293 QR-DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 293 ~~-~~~~L~el~RvLrPGG~lvis~p 317 (617)
++ ...+|+++.++|+|||+++++++
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 32 25799999999999999999854
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-13 Score=132.22 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=89.7
Q ss_pred eEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 295 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~ 295 (617)
.+|||||||+|.++..++.. +++|+++.++..+ +++ ++.+..+|+..+++++++||+|++..++.| ..++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a-----~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIA-----RKR--GVFVLKGTAENLPLKDESFDFALMVTTICF-VDDP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHH-----HHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGG-SSCH
T ss_pred CcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHH-----Hhc--CCEEEEcccccCCCCCCCeeEEEEcchHhh-ccCH
Confidence 58999999999999998877 8888887655444 333 456777888889988889999999988554 4555
Q ss_pred ceEEEEecccccCCceeeecChhhhcCCHHH---------------HHHHHHHHHHHHHhhhhhhh
Q 007128 296 GILLLELDRLLRPGGYFAYSSPEAYAQDEED---------------LRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 296 ~~~L~el~RvLrPGG~lvis~p~~~~~~~~~---------------~~~w~~l~~l~~~~gf~~v~ 346 (617)
..+|+++.++|+|||+++++.+......... ....+++.++++++||+++.
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 7899999999999999999755432110000 00126788889999997654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-13 Score=137.02 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=78.8
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++.. ..+.++ .+.+..+|...+| ++||+|++..++.
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV-LASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE 166 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence 368999999999999988865 589999998887776633 333343 3677778887765 7899999998866
Q ss_pred ccc-cccceEEEEecccccCCceeeecChhh
Q 007128 290 DWL-QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 290 h~~-~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
|+. .+...+++++.++|||||++++.++..
T Consensus 167 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 167 HFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 653 344679999999999999999976543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-13 Score=127.99 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=74.1
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC-CCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP-YPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~h 290 (617)
+.+|||+|||+|.++..|++. .|+++|+++.++..++.+ +.+.++ ++.+...+...++ +.+++||+|+++...++
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQR-LSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 368999999999999999875 699999999998888743 334443 4666666666653 45789999987643232
Q ss_pred c--------ccccceEEEEecccccCCceeeecChh
Q 007128 291 W--------LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~--------~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
. ......++.++.|+|||||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp --------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2 112234778999999999999997544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-13 Score=129.73 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC------CcccccccccccCCCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI------PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~------~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+. ...++ ++.+..+|+..+++++++||+|+|.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 58999999999999998864 5899999998887776433 22222 4777888887777777899999999
Q ss_pred cccccccccc--ceEEEEecccccCCceeeecCh
Q 007128 286 RCRIDWLQRD--GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 286 ~~l~h~~~~~--~~~L~el~RvLrPGG~lvis~p 317 (617)
.++.|+ .++ ..+++++.++|||||+++++..
T Consensus 110 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 110 EVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp SCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 886655 433 5799999999999997777643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-13 Score=134.31 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=78.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH-----------------HhCCCcccccccccccCCCC
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL-----------------ERGIPAYLGVLGTKRLPYPS 276 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~-----------------~rg~~~~~~~~d~~~lpf~~ 276 (617)
.+|||+|||+|..+..|++. .|+|+|+|+.++..++.+... ..+.++.+.++|+..+++++
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 149 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRAN 149 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGC
T ss_pred CeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCccc
Confidence 58999999999999999886 499999999988777533321 12356788899999998874
Q ss_pred -Cccccccccccccccccc-cceEEEEecccccCCceeeec
Q 007128 277 -RSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 277 -~sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis 315 (617)
++||+|++..++.+...+ ...+++++.|+|||||++++.
T Consensus 150 ~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 150 IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 899999987765554332 235899999999999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-13 Score=129.58 Aligned_cols=104 Identities=13% Similarity=0.246 Sum_probs=80.6
Q ss_pred CceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+..+|||||||+|.++..|++. .|+++|+++.++..++..... ..++.+.++|+..++ ++++||+|+|+.+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 34579999999999999999876 589999988777666533222 226788888998888 6789999999988655
Q ss_pred ccccc--ceEEEEecccccCCceeeecChhh
Q 007128 291 WLQRD--GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~--~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+.+.. ..++.++.++|||||+++++++..
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 44321 357999999999999999976443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-13 Score=138.39 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=78.5
Q ss_pred eEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|+. ..|+++|+++.++..++. .+...++. +.+..+|+..++++ ++||+|+|..++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 197 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN 197 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence 6899999999999988852 268999999988877763 33334443 77888999999988 899999998876
Q ss_pred cccccccc--eEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDG--ILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~--~~L~el~RvLrPGG~lvis~ 316 (617)
+|+.+... .+++++.++|||||+++++.
T Consensus 198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 198 IYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 65544422 37999999999999999876
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.2e-14 Score=151.48 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=90.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcc---cccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAY---LGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~---~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||||||+|.++..|++. .|+|+|+++.++. .|++++++.. +...+...+|+++++||+|++..+++
T Consensus 108 ~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~-----~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~ 182 (416)
T 4e2x_A 108 DPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAA-----KAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLC 182 (416)
T ss_dssp SCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHH-----HHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGG
T ss_pred CCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHH-----HHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHH
Confidence 468999999999999999876 5888888776554 4444454422 33445667788889999999999866
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcC----------CHH-HHHHHHHHHHHHHHhhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ----------DEE-DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~----------~~~-~~~~w~~l~~l~~~~gf~~v~ 346 (617)
|+ .++..+|+++.|+|||||++++..+..... .++ .....+++.+++++.||+++.
T Consensus 183 h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 183 HI-PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp GC-TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred hc-CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence 55 456789999999999999999986542110 000 000016788899999997654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-13 Score=129.06 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=79.9
Q ss_pred ceeEEEeecccccccccccccc-hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
+..+|||||||+|.++..+ .. .++++|+++.++..++ ++..++.+..+|...+|+++++||+|++..++.| .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGR-----RRAPEATWVRAWGEALPFPGESFDVVLLFTTLEF-V 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHH-----HHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTT-C
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHH-----HhCCCcEEEEcccccCCCCCCcEEEEEEcChhhh-c
Confidence 3468999999999999888 55 7899998886655444 3334567788889999999999999999988554 4
Q ss_pred cccceEEEEecccccCCceeeecChhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+...+++++.++|||||++++++++.
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 455789999999999999999987654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-12 Score=127.25 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=81.0
Q ss_pred eEEEeeccccccccccc-ccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYL-LSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L-~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..+ +.. .|+++|+++.++..++. .+...+.++.+..+|+..+++++++||+|+|..+++|+.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 103 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHH-HHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence 68999999999885433 332 58999999988887763 344445677888889999999889999999988766652
Q ss_pred -cccceEEEEecccccCCceeeecChh
Q 007128 293 -QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 293 -~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+...+++++.++|||||+++++.+.
T Consensus 104 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 104 KNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 34467999999999999999997654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-13 Score=128.02 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=87.1
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||+|||+|.++..+++. .++++|+++.++..+ +++..++.+...| +++++++||+|++..++.|+
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a-----~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~- 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEV-----KEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM- 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHH-----HHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC-
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHH-----HHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc-
Confidence 368999999999999998876 588888887655444 3334456777666 78888999999999886555
Q ss_pred cccceEEEEecccccCCceeeecChhhhcCC----HHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEAYAQD----EEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~~~~~----~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.+...+++++.|+|||||++++..+...... ......-+++.++++ ||+.+..
T Consensus 89 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 89 DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc
Confidence 4557899999999999999999754322110 000000156777777 9976553
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-13 Score=144.14 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=83.0
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc-
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW- 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~- 291 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++++.+...|+...+.++++||+|+|+..+ |+
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~-~~~ 311 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEALTEEARFDIIVTNPPF-HVG 311 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCC-CTT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhccccCCCeEEEEECCch-hhc
Confidence 368999999999999999876 58999999988887773 44555667888889998888777899999988764 43
Q ss_pred ----ccccceEEEEecccccCCceeeecChhh
Q 007128 292 ----LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ----~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
......++.++.++|||||+++++....
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2233468999999999999999986544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-12 Score=125.06 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=91.1
Q ss_pred EEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc-cc
Q 007128 217 TVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQ 293 (617)
Q Consensus 217 ~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~-~~ 293 (617)
+|||||||+|.++..|++. .|+++|+++.++..++. .....+.++.+..+|+..+++++++||+|+|+.. |+ ..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQ-LAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHH-HHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCCHH
Confidence 8999999999999888876 58999999988877763 3334456788888899999988899999998643 33 23
Q ss_pred ccceEEEEecccccCCceeeecChhhhcCC--------HHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPEAYAQD--------EEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~~~~~~--------~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+...++.++.++|+|||+++++.+...... ......-+++.++++ ||+++..
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 446799999999999999999854332110 000000156677776 8866543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-13 Score=128.79 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=87.7
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccccc---CCCC-Ccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL---PYPS-RSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l---pf~~-~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..|++. .|+++|+++.++..+ +++ ..+.+...+...+ ++.. ++||+|+|+.+++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a-----~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAA-----RAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHH-----HHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHH-----HHh-cccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 68999999999999998876 588888887655444 333 3455666666655 5554 4599999998854
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHH-----------------------HHHHHHHHHHHHHHhhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEE-----------------------DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~-----------------------~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..+...+++++.++|||||+++++++........ .....+++.++++++||+++.
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 4566789999999999999999976533211100 000126788999999997764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-12 Score=133.63 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=81.2
Q ss_pred eeEEEeeccccccccccccc---c--hhhhhccCCCccchhhhHHHHH--hCCCcccccccccccCCCC------Ccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS---S--DVITMSLAPNDVHQNQIQFALE--RGIPAYLGVLGTKRLPYPS------RSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~---~--~V~gvDis~~dl~~a~~~~a~~--rg~~~~~~~~d~~~lpf~~------~sFDl 281 (617)
..+|||||||+|.++..|++ . .|+|+|+++.++..++...... ...++.+.++|+..+++++ ++||+
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 116 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM 116 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence 46899999999999999883 2 5899999998887777443332 1446888899999998887 89999
Q ss_pred ccccccccccccccceEEEEecccccCCceeeec
Q 007128 282 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 282 V~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|+|+.+++| . +...++.++.|+|||||++++.
T Consensus 117 V~~~~~l~~-~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 117 ITAVECAHW-F-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEESCGGG-S-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeHhhHHHH-h-CHHHHHHHHHHhcCCCcEEEEE
Confidence 999988554 4 6678999999999999999984
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-12 Score=129.93 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=78.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..+++. .++++|+++.++..+ +++..++.+..+|+..++ ++++||+|+|+.++ |
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a-----~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~ 106 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA-----ADRLPNTNFGKADLATWK-PAQKADLLYANAVF-Q 106 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHH-----HHHSTTSEEEECCTTTCC-CSSCEEEEEEESCG-G
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCCCcEEEECChhhcC-ccCCcCEEEEeCch-h
Confidence 368999999999999888765 588888887665444 344456788888998888 78899999998874 5
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|..+...+|+++.++|||||+++++.+.
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 107 WVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5566678999999999999999998754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-13 Score=135.81 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=88.5
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh----CCCcccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER----GIPAYLG 265 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r----g~~~~~~ 265 (617)
..+.+.+.+.+.. .. ..+|||||||+|.++..|++. .|+++|+++.++..++.+..... ..++.+.
T Consensus 43 ~~~~~~l~~~l~~------~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 43 AEYKAWLLGLLRQ------HG--CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp HHHHHHHHHHHHH------TT--CCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred HHHHHHHHHHhcc------cC--CCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 4455566666654 22 368999999999999999876 58999999988877764332211 1234566
Q ss_pred cccccccC---CCCCcccccccc-cccccccc------ccceEEEEecccccCCceeeecChhh
Q 007128 266 VLGTKRLP---YPSRSFELAHCS-RCRIDWLQ------RDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 266 ~~d~~~lp---f~~~sFDlV~~s-~~l~h~~~------~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+|...++ +++++||+|+|. .++.|+.+ ....+++++.++|||||+++++.++.
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 77888887 888999999997 67555543 14679999999999999999986643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-12 Score=127.53 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=81.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc-
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW- 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~- 291 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++.. ....+.++.+..+|+..+++++++||+|+|+.++.++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY-AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 468999999999999888776 589999999888777643 3334466788889998888888899999998773222
Q ss_pred ccccceEEEEecccccCCceeeecChh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
..+...+++++.++|+|||++++..+.
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 234467999999999999999997654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-12 Score=126.26 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=86.6
Q ss_pred eEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 295 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~ 295 (617)
.+|||||||+|.++..++ ..++++|+++. ++.+..+|+..+|+++++||+|+|..++ |+ .+.
T Consensus 69 ~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~~ 130 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TNI 130 (215)
T ss_dssp SCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SCH
T ss_pred CeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cCH
Confidence 589999999999998885 57899999885 3456677888899988999999998885 54 555
Q ss_pred ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 296 GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 296 ~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..++.++.++|+|||+++++.+...... -+++.+++++.||+++.
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~~~------~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRFED------VRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGCSC------HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCCC------HHHHHHHHHHCCCEEEE
Confidence 7799999999999999999865543222 25688889999997765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.7e-13 Score=136.76 Aligned_cols=104 Identities=9% Similarity=0.044 Sum_probs=74.1
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC-------cccccccc------ccc--CCCC
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP-------AYLGVLGT------KRL--PYPS 276 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~-------~~~~~~d~------~~l--pf~~ 276 (617)
+.+|||||||+|..+..++.. .|+|+|+|+.+++.|+.+. .+.+.. +.+.+.|+ ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-HhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 468999999999765554433 5999999999999888543 333322 33444444 333 4677
Q ss_pred Ccccccccccccccccc--ccceEEEEecccccCCceeeecChhh
Q 007128 277 RSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~--~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
++||+|+|..++++..+ +...+|+++.|+|||||+|++++++.
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 89999999887433222 22569999999999999999987654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-12 Score=134.15 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=80.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCC-CCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPY-PSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++.+. ...+. ++.+.++|+..+|+ ++++||+|+|..+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 144 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 144 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred CeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECchhh
Confidence 58999999999998888764 5899999998887776433 33333 46788889988888 578999999988754
Q ss_pred cc---ccccceEEEEecccccCCceeeecChhh
Q 007128 290 DW---LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 290 h~---~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+. ..+...+|+++.++|||||+++++.+..
T Consensus 145 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 145 YAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 31 3344679999999999999999986543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-12 Score=122.87 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=79.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..+++. .++++|+++.++..++.. +...++ ++.+..+|...+++ +++||+|++..++.|+.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~ 111 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI-KSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLE 111 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSC
T ss_pred CeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCC
Confidence 58999999999999988875 589999999888777643 333444 57788889988888 78999999998865543
Q ss_pred c-ccceEEEEecccccCCceeeecC
Q 007128 293 Q-RDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 293 ~-~~~~~L~el~RvLrPGG~lvis~ 316 (617)
. +...+++++.++|+|||++++..
T Consensus 112 ~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 112 AKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 2 34569999999999999988753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-13 Score=137.04 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=76.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhC-------------------------------
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERG------------------------------- 259 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg------------------------------- 259 (617)
+.+|||||||+|.++..|+.. .|+|+|+++.++..++........
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 368999999999999988875 589999999888777643221110
Q ss_pred ---------------------------CCcccccccccccC-----CCCCccccccccccccccc-----cccceEEEEe
Q 007128 260 ---------------------------IPAYLGVLGTKRLP-----YPSRSFELAHCSRCRIDWL-----QRDGILLLEL 302 (617)
Q Consensus 260 ---------------------------~~~~~~~~d~~~lp-----f~~~sFDlV~~s~~l~h~~-----~~~~~~L~el 302 (617)
.++.+..+|....+ +.+++||+|+|..++.++. .....+|+++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~ 206 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHH
Confidence 24667777765443 5678999999988753322 1335699999
Q ss_pred cccccCCceeeecChhh
Q 007128 303 DRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 303 ~RvLrPGG~lvis~p~~ 319 (617)
.++|||||+|++...++
T Consensus 207 ~~~LkpGG~lil~~~~~ 223 (292)
T 3g07_A 207 YRHLRPGGILVLEPQPW 223 (292)
T ss_dssp HHHEEEEEEEEEECCCH
T ss_pred HHHhCCCcEEEEecCCc
Confidence 99999999999975443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-12 Score=123.67 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=87.6
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .|+++|+++.++..++. .+...+.. +.+..+|... +.+++||+|+++..+ +
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~-~ 136 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE-NAALNGIYDIALQKTSLLA--DVDGKFDLIVANILA-E 136 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCH-H
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEeccccc--cCCCCceEEEECCcH-H
Confidence 368999999999999888765 58999999988877764 33344444 7777777655 345899999987653 3
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
+. ..+++++.++|+|||+++++..... ..+.+.+++++.||+.+.
T Consensus 137 ~~---~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 137 IL---LDLIPQLDSHLNEDGQVIFSGIDYL--------QLPKIEQALAENSFQIDL 181 (205)
T ss_dssp HH---HHHGGGSGGGEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTEEEEE
T ss_pred HH---HHHHHHHHHhcCCCCEEEEEecCcc--------cHHHHHHHHHHcCCceEE
Confidence 32 4689999999999999999754332 125677888999997654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-12 Score=128.23 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=77.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..+++. .++++|+++.++..++..... .++.+..+|...+++++++||+|++..++.| .
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~ 120 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALHY-V 120 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGGG-C
T ss_pred CEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEeccccc-c
Confidence 68999999999999888765 578888887666544422111 2467788888889988899999999987554 4
Q ss_pred cccceEEEEecccccCCceeeecChh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+...+|+++.++|+|||+++++.+.
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 55578999999999999999997643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-11 Score=122.62 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH---hCCCccccc-ccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE---RGIPAYLGV-LGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~---rg~~~~~~~-~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||||||+|.++..|++. .|+|+|+++.++..+..+..+. ...++.+.. .+....++...+||+++++.
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l- 116 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL- 116 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG-
T ss_pred CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH-
Confidence 368999999999999988875 5899999999988654321110 012333332 22222124456788887542
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcCC------------HH-HHHHHHHHHHHHHHhhhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD------------EE-DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~------------~~-~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..+|.++.|+|||||++++...+.+... .. .....+++.++++++||++..
T Consensus 117 --------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 117 --------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp --------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred --------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999999998632221111 11 111237788899999997543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.8e-12 Score=126.55 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=73.5
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCC------ccchhhhHHHHHhCC--Cccccccc---ccccCCCCCcc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPN------DVHQNQIQFALERGI--PAYLGVLG---TKRLPYPSRSF 279 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~------dl~~a~~~~a~~rg~--~~~~~~~d---~~~lpf~~~sF 279 (617)
.+|||||||+|.++..+++. .|+++|+++. ++..++.+. ...++ ++.+..+| ...+|+++++|
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 68999999999999888764 5899999986 666665333 33333 46677777 56678888999
Q ss_pred ccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 280 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
|+|+|..+++|+. ++..+++.+.++++|||++++...
T Consensus 124 D~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 124 DRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp SEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999998865554 434555556666677999999643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.8e-12 Score=125.85 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=90.6
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC------------------------------
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI------------------------------ 260 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~------------------------------ 260 (617)
++.+|||||||+|.++..++.. .|+++|+++.++..++..... .+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4579999999999999888765 589999999888776533221 110
Q ss_pred Cc-ccccccccccC-CCC---Ccccccccccccccc---ccccceEEEEecccccCCceeeecChhhh----------cC
Q 007128 261 PA-YLGVLGTKRLP-YPS---RSFELAHCSRCRIDW---LQRDGILLLELDRLLRPGGYFAYSSPEAY----------AQ 322 (617)
Q Consensus 261 ~~-~~~~~d~~~lp-f~~---~sFDlV~~s~~l~h~---~~~~~~~L~el~RvLrPGG~lvis~p~~~----------~~ 322 (617)
.+ .+..+|+...+ +++ ++||+|+|..++++. ..+...+|+++.|+|||||+|+++..... ..
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 214 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS 214 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence 14 56777877654 355 899999999886522 22346799999999999999999753210 00
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 323 DEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 323 ~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.... -+++.++++++||+++..
T Consensus 215 ~~~~---~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 215 LPLG---WETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp CCCC---HHHHHHHHHHTTCEEEEE
T ss_pred cccC---HHHHHHHHHHCCCEEEEE
Confidence 0000 147888999999976543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.8e-12 Score=122.77 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=92.5
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CC-cchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YP-RTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p-~tfDlvh~~~~~~ 531 (617)
+|||+|||+|.++..|+++ +. +|+.+|. +.+++.+.++ |+-..+...+.++.. ++ ++||+|++..++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHh
Confidence 7999999999999999987 43 5666664 5777766666 321112212222222 33 8999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh------------------------------HHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------------~~~~~~~~~~~~~w~~~ 581 (617)
|+. ++..+|.|+.|+|||||.++|.+... ..++++++++..+++.+
T Consensus 123 ~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 198 (219)
T 3dlc_A 123 FWE----DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSY 198 (219)
T ss_dssp GCS----CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSE
T ss_pred hcc----CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeE
Confidence 875 78899999999999999999975321 23678899999999986
Q ss_pred cccccCCCCCCCCCCeEEEEEEec
Q 007128 582 ATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+.. ......+++.|+
T Consensus 199 -~~~~-------~~~~~~~~~~k~ 214 (219)
T 3dlc_A 199 -EIIL-------GDEGFWIIISKT 214 (219)
T ss_dssp -EEEE-------ETTEEEEEEBCC
T ss_pred -EEEe-------cCCceEEEEecc
Confidence 4443 123456666663
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-12 Score=136.80 Aligned_cols=143 Identities=11% Similarity=0.116 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccch---
Q 007128 432 FEKDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSI--- 507 (617)
Q Consensus 432 F~~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~--- 507 (617)
+......|......+.+.+-..+....-.+|||+|||+|.++..|++++. +|+.+|. +++++.|.++|+-...
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~ 157 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFF 157 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeee
Confidence 33455667777776655444334444445799999999999999999887 6677774 6888888888762221
Q ss_pred -hhhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------------HH
Q 007128 508 -HNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------------VV 566 (617)
Q Consensus 508 -~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------------~~ 566 (617)
.+-.+.++.-+++||+|++..+|.|+. ++..+|.|+.|+|||||++++..+.. ..
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 233 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIP----YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSA 233 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCH
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcC----CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCH
Confidence 122233331139999999999999987 88999999999999999999986531 24
Q ss_pred HHHHHhhhhcccccc
Q 007128 567 DFVKKYLRALNWEAV 581 (617)
Q Consensus 567 ~~~~~~~~~~~w~~~ 581 (617)
++++.++++.+++.+
T Consensus 234 ~~l~~ll~~aGf~~~ 248 (416)
T 4e2x_A 234 TSVQGMAQRCGFELV 248 (416)
T ss_dssp HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 579999999999885
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-12 Score=129.55 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=84.5
Q ss_pred eeEEEeeccccccccccccc---chhhhhccCCCccchhhhHHHHH----------------hCC--------------C
Q 007128 215 LRTVLDVGCGVASFGAYLLS---SDVITMSLAPNDVHQNQIQFALE----------------RGI--------------P 261 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~---~~V~gvDis~~dl~~a~~~~a~~----------------rg~--------------~ 261 (617)
+.+|||||||+|.+...++. ..|+|+|+|+.++..++...... .+. .
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 46899999999995544443 25999999998887665322110 110 0
Q ss_pred cccccccccc-cCC-----CCCcccccccccccccc---ccccceEEEEecccccCCceeeecChhh---hcCCH----H
Q 007128 262 AYLGVLGTKR-LPY-----PSRSFELAHCSRCRIDW---LQRDGILLLELDRLLRPGGYFAYSSPEA---YAQDE----E 325 (617)
Q Consensus 262 ~~~~~~d~~~-lpf-----~~~sFDlV~~s~~l~h~---~~~~~~~L~el~RvLrPGG~lvis~p~~---~~~~~----~ 325 (617)
+.+..+|+.. +|+ ++++||+|+|+.++++. ..+...+|+++.|+|||||+|+++.... +.... .
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 2233447766 664 44679999999885442 3345679999999999999999963111 00000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 007128 326 DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 326 ~~~~w~~l~~l~~~~gf~~v~ 346 (617)
....-+++.+++++.||+++.
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~ 252 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRD 252 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEE
Confidence 000016788899999997654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-12 Score=122.24 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=89.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..++.. .++|+|+++.++..++. .+...++ ++.+..+|+..++ +++++||+|+++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~- 120 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 120 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-
Confidence 58999999999999888764 59999999988887774 3444444 5788888988877 77889999998754
Q ss_pred cccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
.+|... ...++.++.++|+|||++++.+... ...+.+.+.+.+.||+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------GLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------HHHHHHHHHHHHHTCEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHHCCCeeee
Confidence 233221 1358999999999999999974321 1135566777888886543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-12 Score=122.20 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=96.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++.- +..+..-.+.++.-+++||+|.+..++.|+. .
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~ 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG--P 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC--T
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC--H
Confidence 3699999999999999999876 5667774 677777776632 1111111122332238999999999999874 2
Q ss_pred CCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
-++..+|.++.|+|||||++++.+... ..+++++++...+|+.+ .+.. .. ..+...|.
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~--~~---~~p~~~l~ 191 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT-SSHW--DP---RFPHAYLT 191 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEE-EEEE--CT---TSSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEE-EEEe--cC---CCcchhhh
Confidence 377899999999999999999987432 36789999999999986 4432 21 24556666
Q ss_pred EEe
Q 007128 602 VQK 604 (617)
Q Consensus 602 ~~K 604 (617)
..|
T Consensus 192 ~~~ 194 (203)
T 3h2b_A 192 AEA 194 (203)
T ss_dssp EEE
T ss_pred hhh
Confidence 555
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-12 Score=124.99 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=73.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc--cCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR--LPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~--lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||+|||+|.++..+++. .++++|+++.++. .+.++.. .+..+|+.. +++++++||+|++..++.|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~-----~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAE-----QAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEH 105 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHH-----HHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHH-----HHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhh
Confidence 468999999999999888775 5788888775543 3333322 455667665 6778889999999988655
Q ss_pred cccccceEEEEecccccCCceeeecChh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+ .++..++.++.++|+|||+++++.+.
T Consensus 106 ~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 106 L-FDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp S-SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred c-CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4 44478999999999999999998654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-12 Score=123.86 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=97.0
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----c-ccchhhhhhhcccCCcchhhhhhhh-hhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----L-IGSIHNWCEAYSTYPRTYDLLHAWT-VFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l-~~~~~~~~e~~~~~p~tfDlvh~~~-~~~ 531 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++. + +..+..-.+.++ ++++||+|.+.. +|.
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-ccCCceEEEEcCcccc
Confidence 34799999999999999999876 5677774 67777766552 1 111111112222 348999999998 999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh------------------------------------------------
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------------------------------------------ 563 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------------------------------------------ 563 (617)
|+. ..-++..+|.++.|+|||||.+++....
T Consensus 114 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (246)
T 1y8c_A 114 YII-DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYK 192 (246)
T ss_dssp GCC-SHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEE
T ss_pred ccC-CHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccc
Confidence 882 1116789999999999999999983210
Q ss_pred ----------hHHHHHHHhhhhcccccccccccC-CCCC-CCCCCeEEEEEEec
Q 007128 564 ----------SVVDFVKKYLRALNWEAVATTADA-SSDS-DKDGDEVVFIVQKK 605 (617)
Q Consensus 564 ----------~~~~~~~~~~~~~~w~~~~~~~~~-~~~~-~~~~~~~~l~~~K~ 605 (617)
-..+++++++++.+++.+ .+... ..++ .+..+..+++|+|+
T Consensus 193 ~~~~~~~~~~~~~~~l~~ll~~aGf~~~-~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 193 RFDEEHEERAYKEEDIEKYLKHGQLNIL-DKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEE-EEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred ccEEEEEEEcCCHHHHHHHHHHCCCeEE-EEEcccccCcCCCCceeEEEEEEec
Confidence 046789999999999986 44321 1111 22346678999985
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-12 Score=131.02 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhcCC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGC 538 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c 538 (617)
+|||+|||+|.++..|++++. +|+.+| ++.|++.|.++.-+...+.-.+.++ +| ++||+|.|.++|+++
T Consensus 42 ~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h~~----- 112 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMHWF----- 112 (257)
T ss_dssp EEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCTTC-----
T ss_pred CEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehhHh-----
Confidence 599999999999999999887 456666 3688877766543333333334544 44 999999999999755
Q ss_pred CcccchhhccccccCcceEEEec
Q 007128 539 SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 539 ~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.+.++.|+.|+|||||.|++-.
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEEE
Confidence 57889999999999999998754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-12 Score=119.45 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=96.2
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhc
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~ 536 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++. ..+...+.+.+ ++ ++||+|.+..++.|+.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~--~~v~~~~~d~~-~~~~~~D~v~~~~~l~~~~-- 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKF--DSVITLSDPKE-IPDNSVDFILFANSFHDMD-- 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHC--TTSEEESSGGG-SCTTCEEEEEEESCSTTCS--
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhC--CCcEEEeCCCC-CCCCceEEEEEccchhccc--
Confidence 34699999999999999999874 7778884 67777776661 12221122222 44 8999999999999875
Q ss_pred CCCcccchhhccccccCcceEEEecChh-------------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS-------------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
+...+|.|+.|+|||||++++.+... ..++++++++ +|+.+ ...+ . ....+.|++.
T Consensus 90 --~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~-~~~~--~----~~~~~~l~~~ 158 (170)
T 3i9f_A 90 --DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVE-KRFN--P----TPYHFGLVLK 158 (170)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEE-EEEC--S----STTEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEE-EccC--C----CCceEEEEEe
Confidence 78899999999999999999986532 3567888888 99886 4443 2 3467888888
Q ss_pred ecc
Q 007128 604 KKI 606 (617)
Q Consensus 604 K~~ 606 (617)
|+=
T Consensus 159 ~~~ 161 (170)
T 3i9f_A 159 RKT 161 (170)
T ss_dssp ECC
T ss_pred cCC
Confidence 854
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-11 Score=121.41 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=88.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhH---HHHHhCC-CcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQ---FALERGI-PAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~---~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+|||||||+|.++..|++. .|+++|+++.++.....+ .+...+. ++.+.++|+..+|+++++ |.|+...
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~ 106 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM 106 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence 368999999999999998875 599999999888753211 1122333 578889999999988766 6665221
Q ss_pred ---ccc-ccccccceEEEEecccccCCceeeecChhhhcCC--H-------HHHH-HHHHHHHHHHHhhhhhhh
Q 007128 287 ---CRI-DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD--E-------EDLR-IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ---~l~-h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~--~-------~~~~-~w~~l~~l~~~~gf~~v~ 346 (617)
..+ |+..++..+++++.|+|||||+++++.....+.. + .... .-+.+..++++.||++..
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 107 PWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp CCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred cchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 211 2455557899999999999999999632221110 0 0011 114588899999997644
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-12 Score=126.61 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=80.5
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||||||+|.++..|++. .++++|+++.++..++ ++... .+..+|+..+|+++++||+|++..+++|+.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-----~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR-----EKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH-----HHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHH-----hhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 368999999999999998876 5888888887665544 33222 267788888999889999999988778886
Q ss_pred cccceEEEEecccccCCceeeecChhh
Q 007128 293 QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+...+|+++.++|||||+++++.++.
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 666789999999999999999987664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.5e-12 Score=118.23 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=89.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..+++. .++++|+++.++.. ++++..++.+...|...+++++++||+|+++...+++..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~-----a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDY-----AKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHH-----HHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 58999999999999988875 57888887755444 444434567788888888888889999998733344442
Q ss_pred --ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 294 --RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 294 --~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
+...++.++.++|+|||++++..+...... .+++.+++++.||+++.
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~------~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRGWV------FGDFLEVAERVGLELEN 171 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCC------HHHHHHHHHHHTEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcC------HHHHHHHHHHcCCEEee
Confidence 235689999999999999999765543322 25678888999997654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-12 Score=124.59 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=79.6
Q ss_pred eEEEeecccccccccccccc-hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc-cccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR-CRIDWL- 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~-~l~h~~- 292 (617)
.+|||+|||+|.++..+++. .++++|+++.++..++.. +...+.++.+..+|+..++++ ++||+|+|.. ++.|..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEK-AMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHh-hhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCC
Confidence 58999999999999888775 689999999888777643 333456678888898888877 7899999875 544432
Q ss_pred -cccceEEEEecccccCCceeeecChh
Q 007128 293 -QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 293 -~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+...+++++.++|+|||++++..+.
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 33356899999999999999997544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-12 Score=123.03 Aligned_cols=120 Identities=10% Similarity=0.141 Sum_probs=87.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|++. .++|+|+++.++..++. .+.+.++ ++.+..+|+..++ +++++||.|++...
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~-~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~- 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence 57999999999999988764 58999999988887774 3444454 5788888988876 77889999986543
Q ss_pred cccccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 289 IDWLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 289 ~h~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.+|... ...++.++.++|+|||.|++.+... ...+.+...+...||...
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--------GLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--------HHHHHHHHHHHHHTCEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCccc
Confidence 223221 1357899999999999999975322 112445566677777543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-12 Score=126.45 Aligned_cols=130 Identities=11% Similarity=0.133 Sum_probs=92.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++++. +|+.+|. +.+++.+.++.- ..+...+.++..+ +++||+|.+..++.|+.
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~-- 120 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT-- 120 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCCSCCSEEEEESCGGGSC--
T ss_pred CeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCCCCeEEEEECcchhcCC--
Confidence 4699999999999999999876 5677774 577776666522 1111112222222 38999999999999886
Q ss_pred CCCccc--chhhccccccCcceEEEecChh-------------------------------HHHHHHHhhhhcccccccc
Q 007128 537 GCSGED--LLLEMDRILRPTGFVIIRDKQS-------------------------------VVDFVKKYLRALNWEAVAT 583 (617)
Q Consensus 537 ~c~~~~--~l~Em~RiLrPgG~~ii~~~~~-------------------------------~~~~~~~~~~~~~w~~~~~ 583 (617)
+... +|.|+.|+|||||.++|.++.. ..+++++++++.+++++ .
T Consensus 121 --~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~-~ 197 (220)
T 3hnr_A 121 --DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVT-F 197 (220)
T ss_dssp --HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEE-E
T ss_pred --hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEE-E
Confidence 3444 9999999999999999986431 13678899999999874 3
Q ss_pred cccCCCCCCCCCCeEEEEEEec
Q 007128 584 TADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+.. .+-..++.++|+
T Consensus 198 ~~~-------~~~~w~~~~~~~ 212 (220)
T 3hnr_A 198 TRL-------NHFVWVMEATKQ 212 (220)
T ss_dssp EEC-------SSSEEEEEEEEC
T ss_pred eec-------cceEEEEeehhh
Confidence 322 235667777774
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.8e-12 Score=125.98 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=96.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhh-hhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWT-VFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~-~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.|.++.- +..+..-.+.++ ++++||+|.|.. +|.|+..
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l~~~~~- 126 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFS-LGRRFSAVTCMFSSIGHLAG- 126 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCC-CSCCEEEEEECTTGGGGSCH-
T ss_pred CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCC-ccCCcCEEEEcCchhhhcCC-
Confidence 4699999999999999999876 5666674 677777766632 111111112223 259999999997 9998741
Q ss_pred CCCcccchhhccccccCcceEEEecCh-----------------------------------------------------
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQ----------------------------------------------------- 563 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~----------------------------------------------------- 563 (617)
.-++..+|.++.|+|||||.++|.+..
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 125668899999999999999996300
Q ss_pred --------hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 564 --------SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 564 --------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
-..+++++++++.+++.+ .+.. ......+++|+|+
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~-~~~~------~~~~~~~~va~K~ 249 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVE-FMPG------GPSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEE-EESS------TTTSSCEEEEEEC
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEE-EeeC------CCCCceeEEEecC
Confidence 026889999999999986 4442 1245678999996
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.5e-12 Score=127.40 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=80.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++++.+..+|+..+++ +++||+|+|+.+++|...
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~ 199 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNR 199 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCG
T ss_pred CcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCCH
Confidence 68999999999999999876 58999999988887773 444556688888999988887 789999999987654432
Q ss_pred c-cceEEEEecccccCCceeeecC
Q 007128 294 R-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 294 ~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
+ ...+++++.++|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 200 ERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 2369999999999999988753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-11 Score=117.04 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=93.0
Q ss_pred eCceeecCCCCccccCc-hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchh
Q 007128 174 KGEKIIFPGGGTHFHYG-ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQN 250 (617)
Q Consensus 174 ~~~~~~Fpgg~~~F~~~-a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a 250 (617)
.+..+.|......|... .....+.+.+.+.. . +..+|||+|||+|.++..+++. .++++|+++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~--~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a 90 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVV------D--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLA 90 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC------C--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHH
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHccc------C--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 34445553333344333 22444566666654 3 2368999999999999888765 589999999888777
Q ss_pred hhHHHHHhCCC---cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 251 QIQFALERGIP---AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 251 ~~~~a~~rg~~---~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+... ...++. +.+...|... ++++++||+|+++..+++.......+++++.++|+|||++++..+..
T Consensus 91 ~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 91 KENI-KLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHHH-HHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred HHHH-HHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6433 333443 6777777766 44567999999877643323444578999999999999999986554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-12 Score=119.49 Aligned_cols=135 Identities=16% Similarity=0.072 Sum_probs=90.5
Q ss_pred eeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhH
Q 007128 177 KIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 177 ~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~ 253 (617)
.+..|. ..+........+.+.+.+... ...++.+|||+|||+|.++..++.. .|+++|+++.++..++.+
T Consensus 14 ~l~~~~--~~~rp~~~~~~~~l~~~l~~~-----~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 86 (189)
T 3p9n_A 14 RIAVPP--RGTRPTTDRVRESLFNIVTAR-----RDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN 86 (189)
T ss_dssp EEECCS--CCC---CHHHHHHHHHHHHHH-----SCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred EecCCC--CCCccCcHHHHHHHHHHHHhc-----cCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence 344444 223344455555555555320 0112368999999999998877654 489999999888888743
Q ss_pred HHHHhCC-CcccccccccccC--CCCCccccccccccccccccccceEEEEecc--cccCCceeeecChhh
Q 007128 254 FALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQRDGILLLELDR--LLRPGGYFAYSSPEA 319 (617)
Q Consensus 254 ~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~l~h~~~~~~~~L~el~R--vLrPGG~lvis~p~~ 319 (617)
+...++ ++.+.++|+..++ +++++||+|+++....+...+...++.++.+ +|+|||++++..+..
T Consensus 87 -~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 87 -IEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp -HHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred -HHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 444444 5778888887764 4568999999876633322444668888988 999999999975443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-11 Score=123.45 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=79.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||+|||+|.++..|++. .|+++|+++.++..++. .+...+.++.+..+|+..++++ ++||+|+|..+.+++.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 368999999999999988876 58999999988887774 3444566788888999888876 6899999864434443
Q ss_pred --cccceEEEEecccccCCceeeecCh
Q 007128 293 --QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 293 --~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.+...+++++.++|+|||++++..+
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 2335689999999999999998654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-12 Score=123.20 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=77.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC-CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP-YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp-f~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+..+|+..++ +.+++||+|++...
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK-KLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-HHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 58999999999999888765 58999999988887774 3444444 5778888888776 66789999998765
Q ss_pred ccccc--------cccceEEEEecccccCCceeeecChh
Q 007128 288 RIDWL--------QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 288 l~h~~--------~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
++... .+...++.++.++|||||++++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 32211 11235899999999999999987543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.8e-12 Score=128.97 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=80.5
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH-------hCCCcccccccccccC----CC--CCc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE-------RGIPAYLGVLGTKRLP----YP--SRS 278 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~-------rg~~~~~~~~d~~~lp----f~--~~s 278 (617)
..+|||||||+|.++..+++. .++++|+++.++..++.+.... ...++.+.++|...++ ++ +++
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 368999999999999888754 5899999998887777544332 1225678888888876 64 459
Q ss_pred cccccccccccccc-cc---cceEEEEecccccCCceeeecChhh
Q 007128 279 FELAHCSRCRIDWL-QR---DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 279 FDlV~~s~~l~h~~-~~---~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
||+|+|+.+ +||. .+ ...+|.++.++|||||+++++.+..
T Consensus 115 fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 115 FDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp EEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 999999887 5565 32 3479999999999999999987654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-11 Score=116.13 Aligned_cols=114 Identities=11% Similarity=0.003 Sum_probs=85.7
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++... ...++ ++.+..+|........++||+|++..+..
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~- 119 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNL-KKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG- 119 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHH-HHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT-
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc-
Confidence 68999999999999888765 4899999998888777433 33444 46777777755443446899999876532
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
+...++.++.++|||||++++..+.. ...+.+.+.+++.||
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 120 ---MLEEIIDAVDRRLKSEGVIVLNAVTL--------DTLTKAVEFLEDHGY 160 (204)
T ss_dssp ---CHHHHHHHHHHHCCTTCEEEEEECBH--------HHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEeccc--------ccHHHHHHHHHHCCC
Confidence 33578999999999999999975432 124567788888898
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-11 Score=122.48 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=84.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccc-cccCCC-CCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT-KRLPYP-SRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~-~~lpf~-~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..|++. .|+++|+++.++..+ +++..++.+.++|. ..+|++ +++||+|+|+
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a-----~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLA-----RANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHH-----HHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHH-----HHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 58999999999999999876 588888887655444 44455678888888 678888 8999999976
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
.+...+++++.++|||||+++.. .. ... ...+.+.+.+.||+.+...
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~--~~-~~~------~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYV--GP-RLN------VPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEE--ES-SSC------CTHHHHHHHHTTCEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEe--CC-cCC------HHHHHHHHHHCCCeEEEEE
Confidence 23467899999999999999921 11 111 1356778889999765443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-11 Score=122.30 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=93.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc--c----ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG--L----IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg--l----~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
+.|||+|||+|+|+..|++.+. ..|+.+|. ++||..+..+. + ..++.... ...+| .+||+|.|+.+|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEeeHh
Confidence 4699999999999999988864 25777774 78887643321 1 11222211 12244 5699999988887
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccccccccCCC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAVATTADASS 589 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~~~~~~~~~ 589 (617)
++..+|.|+.|+|||||.+++...++ ..+++..++...+|........+-.
T Consensus 163 -------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 163 -------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp -------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred -------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 45789999999999999998872221 5667889999999998532222222
Q ss_pred CCCCCCCeEEEEEEec
Q 007128 590 DSDKDGDEVVFIVQKK 605 (617)
Q Consensus 590 ~~~~~~~~~~l~~~K~ 605 (617)
+ .....|+++.++|.
T Consensus 236 g-~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 G-GHGNIEFLAHLEKT 250 (291)
T ss_dssp C-GGGCCCEEEEEEEC
T ss_pred C-CCcCHHHHHHhhhc
Confidence 2 24577899988873
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-12 Score=124.52 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=87.4
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.-.+|||+|||+|.++..|++++. ..|+.+|. +.+++.+.++.- +-.++.-.+.++ ++ ++||+|++..++.
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC-CCCCCeEEEEEcchhh
Confidence 345799999999999999988752 24666663 567766665531 111111112233 33 8999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhcccccccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAVATTA 585 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~~~~~ 585 (617)
|+... ++..+|.++.|+|||||+++|.+... ..+++++++++.+|+.+ .+.
T Consensus 170 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~-~~~ 236 (254)
T 1xtp_A 170 YLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV-KEA 236 (254)
T ss_dssp GSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE-EEE
T ss_pred hCCHH--HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE-Eee
Confidence 88421 57899999999999999999988521 34789999999999986 443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-12 Score=128.61 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=74.6
Q ss_pred hHHHhhhcchhhHhhhcCC----ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK----DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~~~~ 530 (617)
+|||+|||+|.++..|+++ ++ +|+.+|. +.|++.|.++ |+...+.-.+.++..+| ..||+|.++.++
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l 149 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 149 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence 5999999999999998764 44 5677774 6899888776 33333333445555566 789999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|+... +...+|.|+.|+|||||.|++.|..
T Consensus 150 ~~~~~~--~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 150 QFLEPS--ERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eecCch--hHhHHHHHHHHHcCCCcEEEEEecc
Confidence 887522 4457899999999999999998753
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-11 Score=122.77 Aligned_cols=129 Identities=15% Similarity=0.189 Sum_probs=79.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccC-CCccchh---hhHHHHHhCC-CcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLA-PNDVHQN---QIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis-~~dl~~a---~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+.+|||||||+|.++..|++. .|+|+|+| +.++..| + +.+.+.++ ++.+..+|+..+|. ..||.|.+.
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~--~~~d~v~~i 101 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPF--ELKNIADSI 101 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCG--GGTTCEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhh--hccCeEEEE
Confidence 368999999999999998742 58999999 4444443 4 23334444 57888889888853 234544433
Q ss_pred ccccccc-------cccceEEEEecccccCCceeeec--ChhhhcCC-------HHHHHHH---HHHHHHHHHhhhhhhh
Q 007128 286 RCRIDWL-------QRDGILLLELDRLLRPGGYFAYS--SPEAYAQD-------EEDLRIW---KEMSALVERMCWRIAA 346 (617)
Q Consensus 286 ~~l~h~~-------~~~~~~L~el~RvLrPGG~lvis--~p~~~~~~-------~~~~~~w---~~l~~l~~~~gf~~v~ 346 (617)
.+.++|. .+...+|.++.|+|||||++++. ........ +.....| .++.+.++++||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 3322221 22345899999999999999982 11110000 0000112 3488889999997653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.1e-12 Score=120.60 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=78.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||+|||+|.++..+++. .++++|+++.++..++..... ..++.+..+|+..+++++++||+|++..++.+..
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 121 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL 121 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred CeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence 58999999999999988775 588999988777666533221 2356778889888898889999999876643332
Q ss_pred --------------cccceEEEEecccccCCceeeecChhh
Q 007128 293 --------------QRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 293 --------------~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+...+++++.++|||||++++.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 233569999999999999999986543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-12 Score=129.11 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=74.2
Q ss_pred chhhHHHhhhcchhhHhhhcC-CceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKE-KDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~-~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.-.+|||+|||+|.++..|++ .+. +|+.+|. +.+++.+.++ |+...+...+.++..+|++||+|++..+|.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE 140 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchh
Confidence 334799999999999999984 455 5666664 5777766665 332222222333444569999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+.. .++..+|.|+.|+|||||.+++.+..
T Consensus 141 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 141 HFGH--ERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp GTCT--TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hcCh--HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 8832 26789999999999999999997743
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-12 Score=122.54 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=87.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-ccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-GLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ ++--...+. +.++ .+++||+|.|..++.|+...
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~~- 118 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPRD- 118 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCHH-
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcCHH-
Confidence 4699999999999999999876 5666664 5777777666 321111121 2233 34999999999999987422
Q ss_pred CCcccchhhccccccCcceEEEecChh---------------HHHHHHHhhhhcc-cccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDKQS---------------VVDFVKKYLRALN-WEAV 581 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------~~~~~~~~~~~~~-w~~~ 581 (617)
++..+|.|+.|+|||||++++..... ..++++.++++.+ |+.+
T Consensus 119 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 119 -ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence 56789999999999999999985532 4678999999999 9986
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-11 Score=112.54 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=80.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccc-cccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGT-KRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~-~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...+.. + +...|. ..++..+++||+|++..+
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCc
Confidence 378999999999999888765 58999999988777763 33334443 4 555555 334433379999998877
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
+.+ ..+++++.++|+|||++++...... ....+...++..+++.
T Consensus 104 ~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 104 LTA-----PGVFAAAWKRLPVGGRLVANAVTVE--------SEQMLWALRKQFGGTI 147 (178)
T ss_dssp TTC-----TTHHHHHHHTCCTTCEEEEEECSHH--------HHHHHHHHHHHHCCEE
T ss_pred ccH-----HHHHHHHHHhcCCCCEEEEEeeccc--------cHHHHHHHHHHcCCee
Confidence 433 4689999999999999999754331 1245566667776543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7e-12 Score=124.74 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=85.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchh-hhhhhcccCC-cchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIH-NWCEAYSTYP-RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ + ..+. +..+....++ ++||+|++..++.|+...
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-~-~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-F-NVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-S-EEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-c-ceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 4699999999999999998877 5666774 5777777666 2 2111 2212122344 999999999999988522
Q ss_pred CCCcccchhhccccccCcceEEEecChh-------------------HHHHHHHhhhhcccccc
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS-------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------------~~~~~~~~~~~~~w~~~ 581 (617)
++..+|.++.|+|||||++++..+.. ..++++.++++.+++.+
T Consensus 118 --~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 118 --RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp --GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 45899999999999999999987542 23578888888888875
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-12 Score=124.37 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=70.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.|.++.- +..++.-.+.+ ..+++||+|++..++.|+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~--- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID--- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS---
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc---
Confidence 599999999999999999876 5666664 567666655521 11111111222 1249999999999999886
Q ss_pred CCcccchhhcc-ccccCcceEEEecC
Q 007128 538 CSGEDLLLEMD-RILRPTGFVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~-RiLrPgG~~ii~~~ 562 (617)
++..+|.|+. |+|||||+++|.++
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 7789999999 99999999999874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-11 Score=120.75 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||||||+|.++..|++. .++++|+++.++..+ +++..++.+..+|+..+++ +++||+|+|+...+++.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a-----~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHA-----RKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHH-----HHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHH-----HHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 368999999999999998876 488888887665544 3443457788888888887 67999999765334444
Q ss_pred ---cccceEEEEecccccCCceeeecChh
Q 007128 293 ---QRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 293 ---~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.+...+|+++.++|+|||+++++.+.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 33356999999999999999998543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-12 Score=125.72 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=85.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhh---hhcccCCcchhhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWC---EAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~---e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.+++....++..+ +.++.-+++||+|++..++.|+.
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE- 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-
Confidence 3699999999999999999877 4556663 57777777664211122111 22331138999999999999886
Q ss_pred cCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccc
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~ 581 (617)
+...+|.++.|+|||||.++|.+... ..++++.+++..+|+.+
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 77899999999999999999987321 23578899999999886
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-11 Score=116.75 Aligned_cols=115 Identities=14% Similarity=0.016 Sum_probs=85.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...+++ +.+..+|+........+||+|++..++
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~--- 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG--- 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC---
T ss_pred CEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc---
Confidence 68999999999999888765 58999999988877773 44444554 778888877733333579999976532
Q ss_pred ccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+.. ++.++.++|||||+++++.... ....++.+.+++.||++.
T Consensus 133 --~~~-~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 133 --SQA-LYDRLWEWLAPGTRIVANAVTL--------ESETLLTQLHARHGGQLL 175 (204)
T ss_dssp --CHH-HHHHHHHHSCTTCEEEEEECSH--------HHHHHHHHHHHHHCSEEE
T ss_pred --cHH-HHHHHHHhcCCCcEEEEEecCc--------ccHHHHHHHHHhCCCcEE
Confidence 234 8999999999999999975432 123566677788786543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-11 Score=129.80 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=91.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc--CCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL--PYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l--pf~~~sFDlV~~s~~ 287 (617)
.+|||||||+|.++..++++ .++++|+ +.++..++. .+.+.++ ++.+..+|+... |++ ++||+|++..+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v 257 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF 257 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence 68999999999999988764 4888998 767666653 3333343 477888888775 566 78999999998
Q ss_pred cccccccc-ceEEEEecccccCCceeeecChhhhcCCHHH-------H--------------HHHHHHHHHHHHhhhhhh
Q 007128 288 RIDWLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQDEED-------L--------------RIWKEMSALVERMCWRIA 345 (617)
Q Consensus 288 l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~~~~~-------~--------------~~w~~l~~l~~~~gf~~v 345 (617)
+++|.++. ..+|+++.++|||||++++..+......... . ...+++.++++++||+.+
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v 337 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEES
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEE
Confidence 77776542 4689999999999999998643222111000 0 012667788888888765
Q ss_pred hc
Q 007128 346 AK 347 (617)
Q Consensus 346 ~~ 347 (617)
..
T Consensus 338 ~~ 339 (363)
T 3dp7_A 338 EI 339 (363)
T ss_dssp CC
T ss_pred EE
Confidence 54
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-11 Score=125.77 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=93.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc-----cc-------------c---------------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG-----LI-------------G--------------- 505 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg-----l~-------------~--------------- 505 (617)
.+|||+|||+|.++..++..++. +|+.+|. ++|++.|.++. .+ |
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~~--~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhhc--ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 46999999999999888887762 6888884 67777665421 00 0
Q ss_pred ---c-hhhhhh--hcccC-CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------
Q 007128 506 ---S-IHNWCE--AYSTY-PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------- 564 (617)
Q Consensus 506 ---~-~~~~~e--~~~~~-p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------- 564 (617)
. ..|..+ ++... ..+||+|.|..+++|+..+.-++..+|.+|.|+|||||+|++++...
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~ 214 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 214 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence 0 011111 12111 26999999999999863222356789999999999999999996321
Q ss_pred --HHHHHHHhhhhcccccccccccCC--CC-C-CCCCCeEEEEEEec
Q 007128 565 --VVDFVKKYLRALNWEAVATTADAS--SD-S-DKDGDEVVFIVQKK 605 (617)
Q Consensus 565 --~~~~~~~~~~~~~w~~~~~~~~~~--~~-~-~~~~~~~~l~~~K~ 605 (617)
..+++.+++...+++.+ .+.... .. . .......+++|+|+
T Consensus 215 ~~~~~~l~~~l~~aGF~i~-~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 215 ALEKGEVEQAVLDAGFDIE-QLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCHHHHHHHHHHTTEEEE-EEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccCHHHHHHHHHHCCCEEE-EEeecccccccccCCCCceEEEEEEec
Confidence 35678999998888875 332210 10 0 11235668899995
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-10 Score=112.99 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=99.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHhh------------ccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCce
Q 007128 429 SEMFEKDTESWRNRVDSYWNLL------------SPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTL 495 (617)
Q Consensus 429 ~e~F~~D~~~Wk~~V~~y~~~l------------~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l 495 (617)
.+.|..++..|......|.... ........-.+|||+|||+|.++..|+. +|+.+|. +..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~------~v~~~D~s~~~~ 99 (215)
T 2zfu_A 26 QRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRN------PVHCFDLASLDP 99 (215)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCS------CEEEEESSCSST
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhhc------cEEEEeCCCCCc
Confidence 4567888888887666665421 1111112334699999999999999952 3344442 2211
Q ss_pred EEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---HHHHHHH
Q 007128 496 KLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---VVDFVKK 571 (617)
Q Consensus 496 ~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~ 571 (617)
.+. .+... .++ ++ ++||+|.+..+++ .. ++..+|.|+.|+|||||.++|.+... ..+++.+
T Consensus 100 ~~~-----~~d~~----~~~-~~~~~fD~v~~~~~l~-~~----~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~ 164 (215)
T 2zfu_A 100 RVT-----VCDMA----QVP-LEDESVDVAVFCLSLM-GT----NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLR 164 (215)
T ss_dssp TEE-----ESCTT----SCS-CCTTCEEEEEEESCCC-SS----CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHH
T ss_pred eEE-----Eeccc----cCC-CCCCCEeEEEEehhcc-cc----CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHH
Confidence 111 12222 222 33 8999999988885 22 78899999999999999999987665 5678999
Q ss_pred hhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 572 YLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 572 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+++..+++.+ .... . ...-.+++++|.
T Consensus 165 ~l~~~Gf~~~-~~~~---~---~~~~~~~~~~k~ 191 (215)
T 2zfu_A 165 AVTKLGFKIV-SKDL---T---NSHFFLFDFQKT 191 (215)
T ss_dssp HHHHTTEEEE-EEEC---C---STTCEEEEEEEC
T ss_pred HHHHCCCEEE-EEec---C---CCeEEEEEEEec
Confidence 9999999985 3321 1 334578888885
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-11 Score=122.99 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=90.5
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
+....-.+|||+|||+|.++..|++.+.. +|+.+|. +.+++.+.++.- +-.+..-.+.++.-+++||+|+|..+
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 117 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA 117 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence 33334457999999999999999988652 4566663 567766665532 11111111233321389999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------------------------
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------------------------------------- 564 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------------------------------------- 564 (617)
+.|+. ++..+|.++.|+|||||.+++.....
T Consensus 118 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (253)
T 3g5l_A 118 LHYIA----SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYH 193 (253)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEEC
T ss_pred hhhhh----hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEe
Confidence 99885 78999999999999999999973221
Q ss_pred -HHHHHHHhhhhccccccccccc
Q 007128 565 -VVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 565 -~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
..+++.+++++.+++.+ .+.+
T Consensus 194 ~t~~~~~~~l~~aGF~~~-~~~e 215 (253)
T 3g5l_A 194 RTVTTYIQTLLKNGFQIN-SVIE 215 (253)
T ss_dssp CCHHHHHHHHHHTTEEEE-EEEC
T ss_pred cCHHHHHHHHHHcCCeee-eeec
Confidence 45789999999999986 5554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-11 Score=119.93 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=94.7
Q ss_pred ChhhhhhhHHHHHHHHH----HHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc
Q 007128 428 SSEMFEKDTESWRNRVD----SYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG 502 (617)
Q Consensus 428 ~~e~F~~D~~~Wk~~V~----~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg 502 (617)
+.+.|....+.|..+.. .|...+..+.....-.+|||+|||+|.++..|+.. +.+|. +.+++.+.+++
T Consensus 13 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~ 85 (219)
T 1vlm_A 13 MWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRG 85 (219)
T ss_dssp TTHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTT
T ss_pred heeecchhHHHHHHHHHhcchhHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcC
Confidence 35666666777766544 23332221000111347999999999999999986 33342 46666666654
Q ss_pred cccchhhhhhhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-----------------
Q 007128 503 LIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------- 564 (617)
Q Consensus 503 l~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------- 564 (617)
+--...+ .+.++ ++ ++||+|++..++.|+. ++..+|.++.|+|||||.+++.+...
T Consensus 86 ~~~~~~d-~~~~~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 159 (219)
T 1vlm_A 86 VFVLKGT-AENLP-LKDESFDFALMVTTICFVD----DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159 (219)
T ss_dssp CEEEECB-TTBCC-SCTTCEEEEEEESCGGGSS----CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CC
T ss_pred CEEEEcc-cccCC-CCCCCeeEEEEcchHhhcc----CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcch
Confidence 3111111 12233 33 7999999999999876 77899999999999999999985431
Q ss_pred -------HHHHHHHhhhhcccccc
Q 007128 565 -------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 565 -------~~~~~~~~~~~~~w~~~ 581 (617)
..+++++++++.+++.+
T Consensus 160 ~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 160 YKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEE
T ss_pred hcccccCCHHHHHHHHHHCCCeEE
Confidence 34678899999999875
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-11 Score=122.01 Aligned_cols=119 Identities=11% Similarity=0.079 Sum_probs=87.6
Q ss_pred eeEEEeeccccccccccccc----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC---CCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP---SRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~---~~sFDlV~~s~ 286 (617)
..+|||||||+|.++..|+. ..|+++|+++.++..++. .+...++ ++.+..+|+..++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK-LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 46899999999999888873 259999999988887773 4444455 578888888888764 67999999764
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
. .+...++.++.++|+|||++++..... .. ....++.+.++..||+..
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~---~~---~~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVALKAAS---AE---EELNAGKKAITTLGGELE 197 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEECC----CH---HHHHHHHHHHHHTTEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEEeCCC---ch---HHHHHHHHHHHHcCCeEe
Confidence 2 334578999999999999999852111 11 113556677788888654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-10 Score=119.47 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=78.8
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH---hCCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE---RGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~---rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
+.+|||||||||.++..|++. .|+|+|+++.|++.+..+..+. ...++. ......+ +..+||+|+|..++
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~--~l~~~~l--~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFR--YAEPVDF--TEGLPSFASIDVSF 161 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGG--GCCGGGC--TTCCCSEEEECCSS
T ss_pred ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCce--ecchhhC--CCCCCCEEEEEeeH
Confidence 368999999999999888765 5999999999987643211100 011111 1122223 34469999987664
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhcC------------CHH-HHHHHHHHHHHHHHhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ------------DEE-DLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~------------~~~-~~~~w~~l~~l~~~~gf~~v 345 (617)
++ ...+|.++.|+|||||.+++...+.+.. ++. ....-+++..++..+||.+.
T Consensus 162 ~s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 162 IS----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp SC----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred hh----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 32 2568999999999999998862221110 111 11222778888889999643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-11 Score=115.13 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=81.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~ 269 (617)
.....+.+.+.. .. +.+|||+|||+|.++..|++. .|+++|+++.++..++.... ..++ ++.+..+|.
T Consensus 64 ~~~~~~~~~l~~------~~--~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~ 134 (210)
T 3lbf_A 64 YMVARMTELLEL------TP--QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLK-NLDLHNVSTRHGDG 134 (210)
T ss_dssp HHHHHHHHHTTC------CT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG
T ss_pred HHHHHHHHhcCC------CC--CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCceEEEECCc
Confidence 334555566554 32 368999999999999988875 58999999988877764333 3333 477888888
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
...+.++++||+|++..++.+.. .++.++|||||+++++.+.
T Consensus 135 ~~~~~~~~~~D~i~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 135 WQGWQARAPFDAIIVTAAPPEIP-------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCGGGCCEEEEEESSBCSSCC-------THHHHTEEEEEEEEEEECS
T ss_pred ccCCccCCCccEEEEccchhhhh-------HHHHHhcccCcEEEEEEcC
Confidence 77766678999999987654433 2589999999999997654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-11 Score=119.22 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=69.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCccccccccccc----CCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL----PYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l----pf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+|+|+++.++.... +.++++ .++.+..+|.... ++. ++||+|+|+.
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 468999999999998887763 5899999997765433 344433 3556666676653 455 7899999862
Q ss_pred cccccccccceEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
. . ......++.++.|+|||||+|+++.+
T Consensus 135 ~-~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 135 A-Q--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp C-S--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-C--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 1 1 12223358999999999999999853
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-11 Score=122.59 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=77.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Cccccccccccc-C--CCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRL-P--YPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l-p--f~~~sFDlV~~s~ 286 (617)
..+|||||||+|.++..|++. .|+|+|+++.++..++. .+.+.++ ++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~-~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLA-SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 358999999999999998864 49999999998888774 4444454 578888888774 4 7889999999764
Q ss_pred cccccccccc--------eEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQRDG--------ILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~~~--------~~L~el~RvLrPGG~lvis~p 317 (617)
. .+|..... .++.++.|+|||||+|++++.
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 33432211 389999999999999999754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-11 Score=121.97 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=78.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+.++|+..++ ++++||+|+++..+ ++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~-~~ 156 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN-NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW-GG 156 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC-SS
T ss_pred CEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc-CC
Confidence 68999999999999999876 58999999988887773 4444555 5788888988877 56799999988764 44
Q ss_pred ccccceEEEEecccccCCceeeec
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.......+.++.++|+|||++++.
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cchhhhHHHHHHhhcCCcceeHHH
Confidence 455456888999999999998875
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-11 Score=116.56 Aligned_cols=120 Identities=13% Similarity=-0.005 Sum_probs=71.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCC-----Ccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPS-----RSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~-----~sFDlV~~s 285 (617)
..+|||+|||+|.++..+++. .++++|+++.++..++... ...+.++.+.++|+.. ++++ ++||+|+|+
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNA-ERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSN 108 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEEEC
T ss_pred CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHhCCceEEEEcchHh-hhhhhhhccCcccEEEEC
Confidence 479999999999999888875 5899999999988877433 3334467777788766 5555 899999986
Q ss_pred ccccccc------ccc-------------------ceEEEEecccccCCce-eeecChhhhcCCHHHHHHHHHHHHHHH-
Q 007128 286 RCRIDWL------QRD-------------------GILLLELDRLLRPGGY-FAYSSPEAYAQDEEDLRIWKEMSALVE- 338 (617)
Q Consensus 286 ~~l~h~~------~~~-------------------~~~L~el~RvLrPGG~-lvis~p~~~~~~~~~~~~w~~l~~l~~- 338 (617)
...++.. ... ..+++++.++|||||+ +++..+.. . .+.+.++++
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~------~~~~~~~l~~ 179 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN---Q------ADEVARLFAP 179 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS---C------HHHHHHHTGG
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc---c------HHHHHHHHHH
Confidence 4322111 000 3467889999999999 66654311 1 245677777
Q ss_pred -Hhhhhhh
Q 007128 339 -RMCWRIA 345 (617)
Q Consensus 339 -~~gf~~v 345 (617)
+.||..+
T Consensus 180 ~~~gf~~~ 187 (215)
T 4dzr_A 180 WRERGFRV 187 (215)
T ss_dssp GGGGTEEC
T ss_pred hhcCCceE
Confidence 7887543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-11 Score=118.21 Aligned_cols=122 Identities=14% Similarity=0.075 Sum_probs=88.3
Q ss_pred eeEEEeeccc-ccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCccccccccccc-CCCCCcccccccccccc
Q 007128 215 LRTVLDVGCG-VASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-PYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG-~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-pf~~~sFDlV~~s~~l~ 289 (617)
+.+|||+||| +|.++..++.. .|+++|+++.++..++. .+...++++.+..+|...+ ++++++||+|+++...+
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 3689999999 99999888775 58999999988887773 4445566788888886433 56678999999875432
Q ss_pred cccc------------------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 290 DWLQ------------------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 290 h~~~------------------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
+... ....++.++.++|||||++++..+... ...+++.+.+++.||+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~ 200 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSV 200 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCce
Confidence 2111 013578899999999999999654321 12356778888889854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-11 Score=124.40 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=70.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCC-----CCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY-----PSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf-----~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|+++ .|+++|+|+.|+..++.+... . +...+...++. .+++||+|+|+.++
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~-~-----~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l 120 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD-R-----CVTIDLLDITAEIPKELAGHFDFVLNDRLI 120 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS-S-----CCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred CEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-c-----cceeeeeecccccccccCCCccEEEEhhhh
Confidence 68999999999999999876 589999998887766532221 1 22233333332 25689999999886
Q ss_pred ccccc-ccceEEEEecccccCCceeeecChh
Q 007128 289 IDWLQ-RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 289 ~h~~~-~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+|+.. +...++.++.++| |||+++++.+.
T Consensus 121 ~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 121 NRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 66543 3345899999999 99999998654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-11 Score=123.05 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=86.2
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc------ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL------IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl------~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
-.+|||+|||+|.++..|++.+. ..|+.+|. +.+++.+.++.- +-.+..-.+.++.-+++||+|.+..++.
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 45799999999999999998752 25666664 567766655531 1111111122232126899999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh---------------HHHHHHHhhhhcccccccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------VVDFVKKYLRALNWEAVATTA 585 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------~~~~~~~~~~~~~w~~~~~~~ 585 (617)
|+... ....+|.++.|+|||||+++|.+... ..++++++++..+|+.+ ...
T Consensus 158 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~-~~~ 223 (241)
T 2ex4_A 158 HLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL-AEE 223 (241)
T ss_dssp GSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE-EEE
T ss_pred hCCHH--HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEE-Eee
Confidence 87622 24589999999999999999977421 46789999999999986 443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-11 Score=124.28 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=83.7
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc----ccchh-hhhhhcccCC-cchhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL----IGSIH-NWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~-~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++.- +-.++ +. +.++ ++ ++||+|++..+
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDI-LTKE-FPENNFDLIYSRDA 129 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT-TTCC-CCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc-ccCC-CCCCcEEEEeHHHH
Confidence 3446999999999999999986 55 5666663 567766666532 11111 22 2222 33 99999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~ 581 (617)
+.|+.. .++..+|.|+.|+|||||.+++.+... ..+++.++++..+++.+
T Consensus 130 l~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 201 (266)
T 3ujc_A 130 ILALSL--ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201 (266)
T ss_dssp GGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHhcCh--HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEE
Confidence 998821 177899999999999999999987421 24567777888787764
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-11 Score=120.84 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=70.0
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
.-.+|||+|||+|.++..|++.+.. +|+.+|. +.+++.+.++.- +..++.-.+.++ ++ ++||+|++..++.|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLH-LPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-CCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-CCCCCceEEEEeccccc
Confidence 3457999999999999999988651 3455553 466666655532 111111112233 33 89999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEec
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+. ++..+|.++.|+|||||.+++..
T Consensus 120 ~~----~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE----DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc----hHHHHHHHHHHhcCcCcEEEEEe
Confidence 76 78899999999999999999975
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-11 Score=120.96 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=84.9
Q ss_pred CceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccccc---ccccCCCCCccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLG---TKRLPYPSRSFELAHC 284 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d---~~~lpf~~~sFDlV~~ 284 (617)
.++.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+.+++ ++.....| ....++..+++|+|++
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~-~a~~~~-ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRR-NIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH-HSTTCT-TEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hhHhhc-CeeEEEEeccCccccccccceEEEEEE
Confidence 34579999999999999999874 48999999988877653 333332 33333333 3456677789999986
Q ss_pred cccccccccccceEEEEecccccCCceeeecChhh----hcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 285 SRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA----YAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 285 s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~----~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
.. ++..+...++.++.|+|||||+++++.... ..... ..+.+..+.+++.||+.+.
T Consensus 154 d~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~---~~~~~ev~~L~~~GF~l~e 213 (233)
T 4df3_A 154 DV---AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPS---EVYKREIKTLMDGGLEIKD 213 (233)
T ss_dssp CC---CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCC---HHHHHHHHHHHHTTCCEEE
T ss_pred ec---cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChH---HHHHHHHHHHHHCCCEEEE
Confidence 53 233444568999999999999999863111 11111 1234445667788997654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-11 Score=123.20 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=83.0
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhh---hhcccCCcchhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWC---EAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~---e~~~~~p~tfDlvh~~~~ 529 (617)
-.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ |+-..+...+ +.++. +++||+|+|..+
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 347999999999999999875 54 4566664 5777666554 3311121111 22232 589999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~ 581 (617)
+.|+. ++..+|.|+.|+|||||++++.++.. ..+++.+++...+++.+
T Consensus 113 ~~~~~----~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 113 TWIAG----GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp GGGTS----SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred hHhcC----CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 98775 78999999999999999999987421 23567888888888775
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-11 Score=119.67 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=87.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhcccC--Ccchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++. ....+...+.++..+ +.+||+|.+..+|.|+
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 799999999999999999877 5677774 67777766653 222223223333333 2799999999999977
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~ 581 (617)
.. .+...+|.++.|+|||||++++.+... ..++++++++..+|+.+
T Consensus 146 ~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 146 EP--EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp CG--GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEE
T ss_pred CH--HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEE
Confidence 42 256789999999999999999865422 36789999999999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-11 Score=126.38 Aligned_cols=129 Identities=21% Similarity=0.196 Sum_probs=90.9
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
...+|||||||+|.++..+++. .++++|+ +.++..++.. ..+.++ .+.+..+|+. .+++. +||+|++.++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRR-FLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHH-HHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHh-hhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 3479999999999999888764 4788888 7777666633 333343 4778888876 46665 8999999999
Q ss_pred ccccccc-cceEEEEecccccCCceeeecChhhhcCCH-HH--HH----------HHHHHHHHHHHhhhhhhh
Q 007128 288 RIDWLQR-DGILLLELDRLLRPGGYFAYSSPEAYAQDE-ED--LR----------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 288 l~h~~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~~~-~~--~~----------~w~~l~~l~~~~gf~~v~ 346 (617)
+++|.++ ...+|+++.++|+|||++++..+......+ .. .. ..+++.++++++||+.+.
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 317 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 7777654 256999999999999999986432211100 00 00 016788899999997654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-11 Score=121.09 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=94.8
Q ss_pred hhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCceEEEeecc----c--ccchhhhhhhcccCC-cchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNTLKLIYDRG----L--IGSIHNWCEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~l~~~~~rg----l--~~~~~~~~e~~~~~p-~tfDlvh~~~ 528 (617)
.+|||+|||+|.++..|++.. . .|+.+|. +.+++.+.++. + +-.+..-.+.++ ++ ++||+|.+..
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG---KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LPDNTVDFIFMAF 114 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SCSSCEEEEEEES
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CCCCCeeEEEeeh
Confidence 479999999999999998865 4 4556663 56666665552 1 111111112222 33 8999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh-------------HHHHHHHhhhhcccccccccccCCCCCCCCC
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------VVDFVKKYLRALNWEAVATTADASSDSDKDG 595 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 595 (617)
++.|+. +...+|.|+.|+|||||.+++.+... ..+++..+++..+|+.+ ...+ . ..
T Consensus 115 ~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~--~----~~ 183 (219)
T 3dh0_A 115 TFHELS----EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVG-RVVE--V----GK 183 (219)
T ss_dssp CGGGCS----SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEE-EEEE--E----TT
T ss_pred hhhhcC----CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEE-EEEe--e----CC
Confidence 999886 77899999999999999999986321 35789999999999986 4443 2 33
Q ss_pred CeEEEEEEec
Q 007128 596 DEVVFIVQKK 605 (617)
Q Consensus 596 ~~~~l~~~K~ 605 (617)
...+++++|+
T Consensus 184 ~~~~~~~~k~ 193 (219)
T 3dh0_A 184 YCFGVYAMIV 193 (219)
T ss_dssp TEEEEEEECC
T ss_pred ceEEEEEEec
Confidence 6788888885
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-11 Score=110.77 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=93.6
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Cccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLG 268 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d 268 (617)
....+.+.+.+.. ..+ .+|||+|||+|.++..+++. .++++|+++.++..++.. ....++ ++.+..+|
T Consensus 21 ~~~~~~~~~~~~~------~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~d 91 (183)
T 2yxd_A 21 EEIRAVSIGKLNL------NKD--DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN-LAKFNIKNCQIIKGR 91 (183)
T ss_dssp HHHHHHHHHHHCC------CTT--CEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH-HHHTTCCSEEEEESC
T ss_pred HHHHHHHHHHcCC------CCC--CEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHHcCCCcEEEEECC
Confidence 4445556666654 333 58999999999999888764 589999999888777643 333443 56777778
Q ss_pred ccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
... ++++++||+|++..+ .+...++.++.++ |||++++..+... ...++.+.+++.||++...
T Consensus 92 ~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 92 AED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVLE--------NAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp HHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCHH--------HHHHHHHHHHHTTCEEEEE
T ss_pred ccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecccc--------cHHHHHHHHHHcCCeEEEE
Confidence 766 667789999998865 3335678888888 9999999764331 1356777888888765443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-10 Score=119.52 Aligned_cols=121 Identities=8% Similarity=0.070 Sum_probs=89.6
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++.+++.++. .+...++. +.+..+|+..++. +++||+|++...
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p--- 201 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV--- 201 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC---
T ss_pred CEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc---
Confidence 68999999999999999875 39999999988888774 44445554 6688889888876 689999987532
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.....++.++.++|||||++++........... ...+.+.+.+++.||+..
T Consensus 202 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TTHHHHHHHHHHTTCEEE
T ss_pred --hhHHHHHHHHHHHCCCCeEEEEEEeeccccccc--cHHHHHHHHHHHcCCeeE
Confidence 222468889999999999999976543211111 113567888888898654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.1e-11 Score=125.34 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=90.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++... .+.++ .+.+..+|+. .+++. .||+|++.+++
T Consensus 203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELL-TGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhh-hhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 468999999999999988875 4788898 77777666433 33333 4778888877 56665 89999999997
Q ss_pred ccccccc-ceEEEEecccccCCceeeecChhhhcCCHH---HHH------------HHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQDEE---DLR------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~~~~---~~~------------~w~~l~~l~~~~gf~~v~ 346 (617)
++|.++. ..+|+++.++|+|||++++..+........ ... ..+++.++++++||+.+.
T Consensus 279 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 279 HDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 6665442 269999999999999999964332211100 000 016788888889987654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.5e-11 Score=115.77 Aligned_cols=141 Identities=11% Similarity=0.112 Sum_probs=92.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----ccc----chhhhhhhcccC---Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIG----SIHNWCEAYSTY---PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~----~~~~~~e~~~~~---p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++.+-. .+|+.+|. +.+++.+.++- +-. .+.-.+.++... +++||+|.|.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 47999999999999999987510 15666663 57777666552 100 111111222222 2799999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHH----Hhhhhcccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVK----KYLRALNWEAV 581 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~----~~~~~~~w~~~ 581 (617)
.++.|+... ++..+|.++.|+|||||.+++..... ..++++ .++.+.+|++
T Consensus 110 ~~l~~~~~~--~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v- 186 (219)
T 3jwg_A 110 EVIEHLDEN--RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV- 186 (219)
T ss_dssp SCGGGCCHH--HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE-
T ss_pred HHHHhCCHH--HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE-
Confidence 999988522 34689999999999999887765432 123444 8888889987
Q ss_pred ccccc-CCCCCCCCCCeEEEEEEec
Q 007128 582 ATTAD-ASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 582 ~~~~~-~~~~~~~~~~~~~l~~~K~ 605 (617)
.... ....+.-.....+.|++|.
T Consensus 187 -~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 -RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp -EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred -EEEecCCccccCCCCeEEEEEecc
Confidence 3331 0022234567899999985
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.8e-11 Score=126.37 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=78.0
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccc--
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCR-- 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l-- 288 (617)
.+|||||||+|.++..+++. .|+|+|+++ ++..++ +.+...++. +.+..+|+..+++++++||+|++..+.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 58999999999999988876 599999995 777776 445555554 788899999999998999999986432
Q ss_pred cccccccceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+++......++.++.|+|||||+++...
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred ccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 2223344568888999999999998653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-11 Score=121.57 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=74.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCC-----Cccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPS-----RSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~-----~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.+. ...++.+.++|+..+++.. ..||+|++..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcchh
Confidence 58999999999999999876 5899999887776655322 1235777888887765432 249999988775
Q ss_pred ccccc-ccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQ-RDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~-~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+|... +...+++++.++|||||++++..+
T Consensus 135 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 135 HHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp TTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 44431 335799999999999999888754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-10 Score=121.31 Aligned_cols=128 Identities=15% Similarity=0.056 Sum_probs=90.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..++++ .++++|+ +.++..++....... ...+.+..+|... +++ ++||+|++..++++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 68999999999999888764 4889999 888877764433221 2347777788766 566 67999999999777
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhhcC-CHHHHH---------------HHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQ-DEEDLR---------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~-~~~~~~---------------~w~~l~~l~~~~gf~~v~ 346 (617)
|.++. ..+++++.++|+|||++++..+..... .+.... .-+++.++++++||+.+.
T Consensus 246 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 246 LDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 75442 379999999999999999974322110 000000 015678888888886543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-11 Score=122.17 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=73.5
Q ss_pred eeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..++ ...|+++|+++.+++.|+... .+.++ ++.+.++|+..+| +++||+|++...
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~-~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI-EGLGVDGVNVITGDETVID--GLEFDVLMVAAL-- 197 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHH-HHHTCCSEEEEESCGGGGG--GCCCSEEEECTT--
T ss_pred cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HhcCCCCeEEEECchhhCC--CCCcCEEEECCC--
Confidence 4799999999997764432 236999999999998888544 34444 5788888888876 689999986533
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
..+...+++++.|+|||||++++..
T Consensus 198 --~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 --AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp --CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred --ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 2444579999999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-10 Score=118.12 Aligned_cols=92 Identities=22% Similarity=0.394 Sum_probs=73.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..+++. .|+++|+++.++ +.++++..++.+...|...+|+++++||+|++..+
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA--- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC---
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC---
Confidence 368999999999999888764 478888877554 44555555677888899899999899999997543
Q ss_pred cccccceEEEEecccccCCceeeecChhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...+.++.|+|||||++++.++..
T Consensus 158 -----~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 -----PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 246899999999999999987654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-10 Score=114.11 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=86.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-----cchhhhh-hhccc--CC-cchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-----GSIHNWC-EAYST--YP-RTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-----~~~~~~~-e~~~~--~p-~tfDlvh~~~ 528 (617)
.+|||+|||+|.|+..|++++.. .|+.+|. ++|++.+..+.- + ..+...+ ++++. ++ .+||++.+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~-- 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI-- 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS--
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh--
Confidence 36999999999999999988742 5777774 788887655321 1 1222222 33332 23 56666654
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh----------------------hHHHHHHHhhhhccccccccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ----------------------SVVDFVKKYLRALNWEAVATTAD 586 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~----------------------~~~~~~~~~~~~~~w~~~~~~~~ 586 (617)
.+..+|.|+.|+|||||.+++...+ ...+++.+++.+.+|+.+.....
T Consensus 115 ----------~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 115 ----------SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp ----------CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred ----------hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 2367999999999999999986211 14557889999999998522222
Q ss_pred CCCCCCCCCCeEEEEEEec
Q 007128 587 ASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 587 ~~~~~~~~~~~~~l~~~K~ 605 (617)
+-.+ .....|+++.++|.
T Consensus 185 pi~g-~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 185 PIKG-GAGNVEFLVHLLKD 202 (232)
T ss_dssp SSCB-TTTBCCEEEEEEES
T ss_pred cCCC-CCCCHHHHHHHhhc
Confidence 1111 23467888888883
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-11 Score=124.16 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=85.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccC-Ccchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTY-PRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~-p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+ +..++.-.+.++.+ +++||+|+|..++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4699999999999999999877 4556663 5777766655 33 11222212333423 3999999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh----------------------------------HHHHHHHhhhhc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------------------VVDFVKKYLRAL 576 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------------------~~~~~~~~~~~~ 576 (617)
.|+. ++..+|.|+.|+|||||+++|.+... ..++++.+++..
T Consensus 147 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 147 EWVA----DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp GGCS----CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred hccc----CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 9886 77899999999999999999987532 135788888888
Q ss_pred ccccc
Q 007128 577 NWEAV 581 (617)
Q Consensus 577 ~w~~~ 581 (617)
+|+.+
T Consensus 223 Gf~v~ 227 (285)
T 4htf_A 223 GWQIM 227 (285)
T ss_dssp TCEEE
T ss_pred CCcee
Confidence 88864
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-11 Score=120.73 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=91.5
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccC--Ccchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTY--PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++-- .+.+...+.++..+ +++||+|++..++.|+
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 57999999999999999986 55 4566663 567766665521 11222222333333 3899999999999987
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-----------------------------------------HHHHHHHh
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------------------------------VVDFVKKY 572 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------------------------------~~~~~~~~ 572 (617)
... +...+|.|+.|+|||||.+++.+... ..+++.++
T Consensus 123 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 123 EDE--DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp CHH--HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CHH--HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 521 22359999999999999999987321 12456778
Q ss_pred hhhcccccccccccCCCCCCCCCCeEEEEEEecccc
Q 007128 573 LRALNWEAVATTADASSDSDKDGDEVVFIVQKKIWL 608 (617)
Q Consensus 573 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~~w~ 608 (617)
++..+++.+ ++.- ..-.-.++...|+=|.
T Consensus 201 l~~aGF~~v-~~~~------~~~~~~~~~~~~~~~~ 229 (234)
T 3dtn_A 201 LKEAGFRDV-SCIY------KYYQFAVMFGRKTEGH 229 (234)
T ss_dssp HHHTTCEEE-EEEE------EETTEEEEEEECC---
T ss_pred HHHcCCCce-eeee------eecceeEEEEEecccc
Confidence 888999886 3332 1234667777776553
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-11 Score=123.70 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=72.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----c----------ccchhhhhhhcccCCcchhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----L----------IGSIHNWCEAYSTYPRTYDLL 524 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l----------~~~~~~~~e~~~~~p~tfDlv 524 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.|++.|.++. . .+...+..+++ ..+++||+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~V 134 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PAGDGFDAV 134 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCTTCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc-ccCCCeEEE
Confidence 4699999999999999999877 6777774 68888776542 1 11111111111 123899999
Q ss_pred hhh-hhhhhhhh---cCCCcccchhhccccccCcceEEEecCh
Q 007128 525 HAW-TVFSDIEK---RGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 525 h~~-~~~~~~~~---~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|. .+|.|+.. ...++..+|.++.|+|||||++++..+.
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 998 89998861 0112789999999999999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5e-11 Score=120.49 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=86.6
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++.+.+..+|.... +++++||+|+++.. .+.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~-~~~-- 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLY-AEL-- 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECC-HHH--
T ss_pred CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhhc-CcCCCCCEEEECCc-HHH--
Confidence 68999999999998887765 58999999988887773 4444555566666665542 45678999998643 232
Q ss_pred ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
...++.++.++|+|||+++++...... .+.+.+.+++.||+++.
T Consensus 197 -~~~~l~~~~~~LkpgG~lils~~~~~~--------~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 197 -HAALAPRYREALVPGGRALLTGILKDR--------APLVREAMAGAGFRPLE 240 (254)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEEGGG--------HHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEeeccCC--------HHHHHHHHHHCCCEEEE
Confidence 245889999999999999997543321 25678888899997654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-11 Score=112.81 Aligned_cols=111 Identities=15% Similarity=0.042 Sum_probs=81.9
Q ss_pred eEEEeecccccccccccccc-hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 294 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~ 294 (617)
.+|||+|||+|.++..|++. .|+++|+++.++.. ..++.+.++|+.. ++++++||+|+|+..+ ++..+
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~-~~~~~ 93 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPY-VPDTD 93 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCC-BTTCC
T ss_pred CeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCC-ccCCc
Confidence 48999999999999999876 68889888866544 2356777888776 6667899999997664 33222
Q ss_pred c---------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 295 D---------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 295 ~---------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. ..++.++.+.| |||++++..+... . .+++.+++++.||+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~------~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--R------PKEVLARLEERGYGTRI 145 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--C------HHHHHHHHHHTTCEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--C------HHHHHHHHHHCCCcEEE
Confidence 2 34677888888 9999999764331 1 25677888999996543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.9e-12 Score=131.51 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=76.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID- 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h- 290 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .....++...+...|.... .+++||+|+|+..+++
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-TLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCEEEEcccccc--ccCCeeEEEECCCcccC
Confidence 47999999999999888764 58999999988877774 3444566666666666543 4679999999876432
Q ss_pred ---cccccceEEEEecccccCCceeeecChhh
Q 007128 291 ---WLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ---~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.......+++++.|+|||||.+++..+..
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 12233569999999999999999976543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-11 Score=120.42 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=84.0
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc---cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR---LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~---lpf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+..+ .++.+..+|+.. +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 468999999999999988764 4899999987655444 444443 456777788766 556678999999754
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhh-cCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY-AQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~-~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. ..+....++.++.++|||||+++++.+... .........+..-.+++++.||+.+.
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 3 111213357889999999999999754421 11111111122224667778886543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-10 Score=117.76 Aligned_cols=120 Identities=9% Similarity=0.107 Sum_probs=85.3
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccC--CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLP--YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lp--f~~~sFDlV~~s~~ 287 (617)
+.+|||+|||+|.++..++++ .|+++|+++.++..++. .+...++. +.+..+|+..++ +++++||+|+|+..
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKR-SVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHH-HHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHH-HHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 368999999999999988875 58999999988877774 34444443 778888887765 55789999998643
Q ss_pred cccc----c---------------cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDW----L---------------QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~----~---------------~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.+.. . .+...++.++.++|||||++++..+.. . ..++...+.+.||..
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~------~~~~~~~l~~~~~~~ 195 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE---R------LLDIIDIMRKYRLEP 195 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT---T------HHHHHHHHHHTTEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH---H------HHHHHHHHHHCCCce
Confidence 2211 0 111347888999999999999964321 1 245666777777754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-11 Score=127.74 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=89.4
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHH------
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQF------ 254 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~------ 254 (617)
..|.......+..+.+.+.. ..+ .+|||||||+|.++..++.. .|+|+|+++.++..|+...
T Consensus 152 ~vYGEt~~~~i~~il~~l~l------~~g--d~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr 223 (438)
T 3uwp_A 152 EVYGETSFDLVAQMIDEIKM------TDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW 223 (438)
T ss_dssp GGGGGTHHHHHHHHHHHHCC------CTT--CEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhcCC------CCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 34444455566667677665 333 68999999999998887743 3999999998777666432
Q ss_pred HHHhC---CCcccccccccccCCCC--CccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 255 ALERG---IPAYLGVLGTKRLPYPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 255 a~~rg---~~~~~~~~d~~~lpf~~--~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+...+ .++.+..+|+..+|+.+ ..||+|+++.. +++ .+....|.++.|+|||||+|+++.+
T Consensus 224 ~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~F~-pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 224 MKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-AFG-PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-TCC-HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred HHHhCCCCCCeEEEECcccCCccccccCCccEEEEccc-ccC-chHHHHHHHHHHcCCCCcEEEEeec
Confidence 22334 35888999999988864 47999998755 333 4446688999999999999998754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-10 Score=133.10 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=82.2
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHH-----hC-CCcccccccccccCCCCCcccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALE-----RG-IPAYLGVLGTKRLPYPSRSFELAH 283 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~-----rg-~~~~~~~~d~~~lpf~~~sFDlV~ 283 (617)
+.+|||||||+|.++..|++. .|+|+|+++.++..++.+.... .+ .++.+.++|+..+++++++||+|+
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 368999999999999998764 4899999998888776543322 12 257888999999999999999999
Q ss_pred cccccccccccc-ceEEEEecccccCCceeeecChhh
Q 007128 284 CSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 284 ~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
|..++.|+.++. ..+++++.|+|||| ++++++++.
T Consensus 802 ~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 802 CLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 998866654432 24889999999999 888876554
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-10 Score=110.28 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=90.6
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--Cccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLG 268 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d 268 (617)
.....+.+.+.. ..+ .+|||+|||+|.++..+++. .|+++|+++.++..++.. ....+. ++.+...|
T Consensus 20 ~~~~~~~~~~~~------~~~--~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~d 90 (192)
T 1l3i_A 20 EVRCLIMCLAEP------GKN--DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGD 90 (192)
T ss_dssp HHHHHHHHHHCC------CTT--CEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESC
T ss_pred HHHHHHHHhcCC------CCC--CEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH-HHHcCCCcceEEEecC
Confidence 344455555554 333 68999999999998888765 589999998877776633 333344 46666677
Q ss_pred ccccCCCC-CccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 269 TKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 269 ~~~lpf~~-~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
... ++++ ++||+|++...+.+ ...++.++.++|+|||++++..+.. ....++.+.+++.||+.
T Consensus 91 ~~~-~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 91 APE-ALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRDLGFDV 154 (192)
T ss_dssp HHH-HHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHHTTCCC
T ss_pred HHH-hcccCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEEEEecCc--------chHHHHHHHHHHCCCce
Confidence 655 2333 58999998765322 2468999999999999999975432 12356778888899843
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-11 Score=117.88 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=82.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc----cCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR----LPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~----lpf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+++|+++.++..++. .+... .++.+..+|+.. +++. ++||+|++.
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~- 150 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED- 150 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC-
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe-
Confidence 468999999999999888764 48999999987766653 23322 456777778777 7776 789999822
Q ss_pred ccccccccc---ceEEEEecccccCCceeeecChhh-hcCCHHHHHHH-HHHHHHHHHhhhhhhh
Q 007128 287 CRIDWLQRD---GILLLELDRLLRPGGYFAYSSPEA-YAQDEEDLRIW-KEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~~-~~~~~~~~~~w-~~l~~l~~~~gf~~v~ 346 (617)
..++ ..++.++.++|||||+++++.... ..........+ +++. ++++.||+.+.
T Consensus 151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~ 209 (230)
T 1fbn_A 151 -----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVD 209 (230)
T ss_dssp -----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEE
T ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEE
Confidence 2222 457999999999999999962111 11110011222 5666 77888986544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-11 Score=116.36 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=75.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccCC--CCCc-cccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLPY--PSRS-FELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lpf--~~~s-FDlV~~s~ 286 (617)
.+|||+|||+|.++..++.+ .|+++|+++.++..++. .+...++ ++.+..+|+..+.. ++++ ||+|++..
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHH-HHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 58999999999998876554 58999999998888874 4444454 57788888776532 3678 99999876
Q ss_pred cccccccccceEEEEe--cccccCCceeeecChhh
Q 007128 287 CRIDWLQRDGILLLEL--DRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el--~RvLrPGG~lvis~p~~ 319 (617)
. ++ ......++.++ .|+|+|||+++++....
T Consensus 134 ~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 P-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp C-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred C-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5 33 23334577777 78999999999976544
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-11 Score=131.29 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC----CcccccccccccCCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI----PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~----~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+...|... ++++++||+|+|+..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~-n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL-NVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH-HHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 68999999999999998875 58999999988887774 3444443 35567777765 567789999999876
Q ss_pred cccc--cccc--ceEEEEecccccCCceeeecChhh
Q 007128 288 RIDW--LQRD--GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 288 l~h~--~~~~--~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+++. .... ..+++++.++|||||+++++.+..
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 4321 1111 146899999999999999975443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-11 Score=125.39 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=75.0
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..+++. .++++|+ +.++..++.+. ...++ ++.+..+|... +++. .||+|++..++
T Consensus 183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 258 (374)
T 1qzz_A 183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF-ADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVL 258 (374)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-cCCC-CCCEEEEeccc
Confidence 368999999999999888765 4788888 77777666433 33344 47777788754 4454 49999999987
Q ss_pred ccccccc-ceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
++|.+.. ..+|+++.++|+|||++++..+
T Consensus 259 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 259 LNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 7765442 3699999999999999998755
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-11 Score=122.64 Aligned_cols=145 Identities=14% Similarity=0.065 Sum_probs=89.9
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------------------ccc--------------
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------------------LIG-------------- 505 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------------------l~~-------------- 505 (617)
.+|||+|||+|.++..++.. +. +|+.+|. +.|++.|.++- +.|
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFE---DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCS---EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCCC---eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 46999999999965544443 33 6777774 67877665421 011
Q ss_pred ----c-hhhhhh--hcc--cCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh------------
Q 007128 506 ----S-IHNWCE--AYS--TYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------ 563 (617)
Q Consensus 506 ----~-~~~~~e--~~~--~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------ 563 (617)
. ..|... +|. .++ ++||+|.|..+|.++.....++..+|.|+.|+|||||+|++.+..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 0 002111 121 133 779999999999984311126789999999999999999996421
Q ss_pred ----hHHHHHHHhhhhcccccccccccCC-----CCCCCCCCeEEEEEEecccc
Q 007128 564 ----SVVDFVKKYLRALNWEAVATTADAS-----SDSDKDGDEVVFIVQKKIWL 608 (617)
Q Consensus 564 ----~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~l~~~K~~w~ 608 (617)
-..+++++++...+++.+ .+.... ..+.+...-.+.+++|+-|.
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVR-DLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE-EEEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred eeccCCHHHHHHHHHHcCCeEE-EeeEeeccccccccccCcceEEEEEEecccc
Confidence 146789999999888875 322111 11112333456667776663
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-11 Score=122.52 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=91.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..+++. .++++|++ .++..++.... +.++ .+.+..+|....+++++ ||+|++.+++
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 368999999999999888765 58899998 77777764333 3343 37788888887777754 9999999987
Q ss_pred cccccc-cceEEEEecccccCCceeeecChhhhcC--CHHHHH----------------HHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQR-DGILLLELDRLLRPGGYFAYSSPEAYAQ--DEEDLR----------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~--~~~~~~----------------~w~~l~~l~~~~gf~~v~ 346 (617)
+++.++ ...+|+++.++|+|||++++..+..... .+.... .-+++.++++++||+.+.
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 766432 2469999999999999998864332210 000000 026778888888886654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-11 Score=118.32 Aligned_cols=117 Identities=9% Similarity=0.122 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcc
Q 007128 438 SWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYS 515 (617)
Q Consensus 438 ~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~ 515 (617)
.|......+.+.+...+ ..-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- +..++.-.+.++
T Consensus 22 ~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~ 96 (239)
T 3bxo_A 22 DYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFR 96 (239)
T ss_dssp CHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC
T ss_pred hHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc
Confidence 34444444444444323 2234799999999999999998765 5666664 577777666531 111111112222
Q ss_pred cCCcchhhhhh-hhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 516 TYPRTYDLLHA-WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 516 ~~p~tfDlvh~-~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++++||+|.| ..++.|+. ...++..+|.++.|+|||||.+++.+
T Consensus 97 -~~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 97 -LGRKFSAVVSMFSSVGYLK-TTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp -CSSCEEEEEECTTGGGGCC-SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -cCCCCcEEEEcCchHhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2589999995 55888774 11256789999999999999999974
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.6e-11 Score=124.90 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=83.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++++|+++ .+..+..+. ......+.+..+|+. .+++ +||+|++..++++
T Consensus 185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~~~~~~-~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~ 259 (348)
T 3lst_A 185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVARHRLDA-PDVAGRWKVVEGDFL-REVP--HADVHVLKRILHN 259 (348)
T ss_dssp SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHTTCCCCC-GGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGG
T ss_pred CceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhhcccccc-cCCCCCeEEEecCCC-CCCC--CCcEEEEehhccC
Confidence 479999999999999988764 467777743 222111100 111224677778875 4555 8999999998777
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhhcC--C-HH-HHH------------HHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQ--D-EE-DLR------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~--~-~~-~~~------------~w~~l~~l~~~~gf~~v~ 346 (617)
|.++. ..+|+++.++|||||++++.+...... . .. ... ..+++.++++++||+.+.
T Consensus 260 ~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 260 WGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp SCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 65542 479999999999999999864322111 0 00 000 116788899999997654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-11 Score=123.83 Aligned_cols=133 Identities=17% Similarity=0.076 Sum_probs=91.9
Q ss_pred hhHHHhhhcchhhHhhhcC--C-ceEEEEeecCCC-CCceEEEeecc----cccchhhhhhhccc--CCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE--K-DVWVMSVVPEDG-PNTLKLIYDRG----LIGSIHNWCEAYST--YPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~--~-~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~~~~e~~~~--~p~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|+. . +. +|+.+|. +.+++.+.++. +-..+...+.++.. ++++||+|.+..+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV---QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGL 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC---eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECCh
Confidence 4699999999999999952 2 34 5666664 56776665542 21112112222222 3499999999999
Q ss_pred hhhhhhcCCCccc---chhhccccccCcceEEEecCh---------------------------------------hHHH
Q 007128 530 FSDIEKRGCSGED---LLLEMDRILRPTGFVIIRDKQ---------------------------------------SVVD 567 (617)
Q Consensus 530 ~~~~~~~~c~~~~---~l~Em~RiLrPgG~~ii~~~~---------------------------------------~~~~ 567 (617)
+.|+. +... ++.|+.|+|||||++++.+.. -..+
T Consensus 197 ~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 197 NIYEP----DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp GGGCC----CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhcC----CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99875 4444 799999999999999998821 1367
Q ss_pred HHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 568 FVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 568 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+++++++..+++.+ ++.+ . ....-..++++|+
T Consensus 273 ~~~~~l~~aGF~~v-~~~~--~---~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDL-RFED--D---RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEE-EEEC--C---TTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEE-EEEc--c---cCceeeEEEEecC
Confidence 89999999999986 4443 1 1334567888884
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-10 Score=123.02 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=88.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..+++. .++++|+ +.++..++.+ ....++ ++.+..+|... +++. .||+|++..++
T Consensus 184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 259 (360)
T 1tw3_A 184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVL 259 (360)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCG
T ss_pred CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHH-HHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcccc
Confidence 368999999999999888765 3677788 7777776633 333344 47777788754 4454 49999999987
Q ss_pred ccccccc-ceEEEEecccccCCceeeecChh-hh-cC-CHH--HHH------------HHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSPE-AY-AQ-DEE--DLR------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p~-~~-~~-~~~--~~~------------~w~~l~~l~~~~gf~~v~ 346 (617)
++|.++. ..+++++.++|+|||++++..+. .. .. ... ... .-+++.++++++||+.+.
T Consensus 260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (360)
T 1tw3_A 260 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335 (360)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence 7765432 36899999999999999987543 11 11 110 000 016778888888987654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-11 Score=120.33 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=73.9
Q ss_pred eeEEEeecccccc----ccccccc--------chhhhhccCCCccchhhhHHHH---H-------------------hC-
Q 007128 215 LRTVLDVGCGVAS----FGAYLLS--------SDVITMSLAPNDVHQNQIQFAL---E-------------------RG- 259 (617)
Q Consensus 215 ~~~VLDVGCG~G~----~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~---~-------------------rg- 259 (617)
..+|||+|||+|. ++..|++ ..|+|+|+|+.+++.|+...-. . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3689999999996 5544543 2589999999988887743200 0 00
Q ss_pred --------CCcccccccccccCCC-CCcccccccccccccccccc-ceEEEEecccccCCceeeec
Q 007128 260 --------IPAYLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 260 --------~~~~~~~~d~~~lpf~-~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
-.+.|.+.|....|++ .+.||+|+|.++++++.+.. ..++.+++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1366777787776665 57899999999866553321 46999999999999999995
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-11 Score=120.82 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=93.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----------------------------------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----------------------------------- 503 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----------------------------------- 503 (617)
.+|||+|||+|.++..|+..+. .+|+.+|. +.+++.+.++.-
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 4699999999999999998765 35666774 567666644311
Q ss_pred c-cch-hhhhhhcccCC---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------
Q 007128 504 I-GSI-HNWCEAYSTYP---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------- 564 (617)
Q Consensus 504 ~-~~~-~~~~e~~~~~p---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------- 564 (617)
+ ..+ .+..+..+.-+ ++||+|+|..+++++..+.-++..+|.++.|+|||||++++.+...
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 215 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL 215 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence 1 111 12111111112 7999999999998543222267789999999999999999986321
Q ss_pred --HHHHHHHhhhhcccccccccccCC-CC--CCCCCCeEEEEEEec
Q 007128 565 --VVDFVKKYLRALNWEAVATTADAS-SD--SDKDGDEVVFIVQKK 605 (617)
Q Consensus 565 --~~~~~~~~~~~~~w~~~~~~~~~~-~~--~~~~~~~~~l~~~K~ 605 (617)
..+++.+++...+++.+....... .. ........+++|+|.
T Consensus 216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 345889999999998752222110 11 111234667888884
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-11 Score=118.33 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=84.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhccc-C-Ccchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYST-Y-PRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~-~-p~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++|+ ..+...+.++.. + +++||+|++..++.|+...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~ 123 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGL-DNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDD 123 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCC-TTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCC-CCeEEEecccccCCCCCceeEEEEechhhcCCHH
Confidence 3799999999999999998866 5666663 577777776663 111111112111 2 3999999999999988621
Q ss_pred CCCcccchhhccccccCcceEEEecChh----------------------------------HHHHHHHhhhhccccc
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------------------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------------------~~~~~~~~~~~~~w~~ 580 (617)
.+..+|.++.|+|||||.+++.+... ..+++.+++++.+|++
T Consensus 124 --~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 124 --RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred --HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 24789999999999999999986521 3367888999999986
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-11 Score=112.22 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=84.0
Q ss_pred ccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccc
Q 007128 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYL 264 (617)
Q Consensus 187 F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~ 264 (617)
+......+.+.+.+.+.. ...+..+|||+|||+|.++..+++. .|+++|+++.++..++.+ +...++++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~ 92 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRL------RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARV 92 (171)
T ss_dssp CCCCCHHHHHHHHHHHHH------HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEE
T ss_pred CCCCHHHHHHHHHHHHHh------hccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-HHHcCCceEE
Confidence 344445555666655542 1112368999999999999888765 489999999888877743 3334446777
Q ss_pred cccccccc-CC-C--CCccccccccccccccccccceEEEEec--ccccCCceeeecChhh
Q 007128 265 GVLGTKRL-PY-P--SRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFAYSSPEA 319 (617)
Q Consensus 265 ~~~d~~~l-pf-~--~~sFDlV~~s~~l~h~~~~~~~~L~el~--RvLrPGG~lvis~p~~ 319 (617)
...|+... +. + .++||+|++...+ + .....++..+. ++|+|||+++++.+..
T Consensus 93 ~~~d~~~~~~~~~~~~~~~D~i~~~~~~-~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 93 VALPVEVFLPEAKAQGERFTVAFMAPPY-A--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECSCHHHHHHHHHHTTCCEEEEEECCCT-T--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EeccHHHHHHhhhccCCceEEEEECCCC-c--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 77777652 21 1 2479999987653 2 33345667777 9999999999976554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-12 Score=143.21 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=72.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccc-cchh----hhhhhcccCCcchhhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLI-GSIH----NWCEAYSTYPRTYDLLHAWT- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~-~~~~----~~~e~~~~~p~tfDlvh~~~- 528 (617)
.+|||+|||+|+|+.+++..+.. .|+.+|. +.+++.+.++ |+- ..+. |..+-+....++||+|.++-
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 36999999999999999887652 3666664 5666666554 331 0111 22111222347999998743
Q ss_pred ----------hhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccc
Q 007128 529 ----------VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 529 ----------~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~ 579 (617)
++.... +...++.++.|+|||||+++++........-.+.+...+++
T Consensus 619 ~f~~~~~~~~~~~~~~----~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~ 675 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQR----DHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLK 675 (703)
T ss_dssp SBC-------CCBHHH----HHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEE
T ss_pred cccCCccchhHHHHHH----HHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCc
Confidence 222222 44578999999999999999988764322234555566666
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-12 Score=119.09 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=80.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.++.-.+.++. +++||+|.+..++.|
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 4799999999999999998876 5666664 5666655543 22 1111111122232 689999999999997
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
+... ++..+|.++.|+|||||.++|.+... ..++++++++. |+.+
T Consensus 110 ~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~ 168 (199)
T 2xvm_A 110 LEAK--TIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERV 168 (199)
T ss_dssp SCGG--GHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred CCHH--HHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEE
Confidence 7422 56789999999999999988765321 34578888887 8775
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-10 Score=115.22 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=87.4
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHH-hCCCcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++...... ...++.+...|+...++++++||+|++.
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~---- 173 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD---- 173 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE----
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC----
Confidence 68999999999999888765 4899999998887776443332 2235778888888888888899999863
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. .++..++.++.++|+|||++++..+... ...++.+.+++.||..+.
T Consensus 174 -~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 174 -L-MEPWKVLEKAALALKPDRFLVAYLPNIT--------QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp -S-SCGGGGHHHHHHHEEEEEEEEEEESCHH--------HHHHHHHHHTTTTEEEEE
T ss_pred -C-cCHHHHHHHHHHhCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCceEE
Confidence 2 2335789999999999999999765431 134556666778886544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-11 Score=119.36 Aligned_cols=116 Identities=9% Similarity=0.175 Sum_probs=82.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeecc-c--------------ccchhhhhhhcccCC----c
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRG-L--------------IGSIHNWCEAYSTYP----R 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rg-l--------------~~~~~~~~e~~~~~p----~ 519 (617)
.+|||+|||+|.++..|++++. .|+.+| ++.|++.|.++. . ...+...+.++..+| +
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 3699999999999999999876 677777 468888777662 1 122333334444443 6
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcce--EEEecCh----------hHHHHHHHhhhhcccccc
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGF--VIIRDKQ----------SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~--~ii~~~~----------~~~~~~~~~~~~~~w~~~ 581 (617)
+||+|.+..+|.|+.. .+...++.||.|+|||||. ++..+.. -..++++.++.. +|+.+
T Consensus 101 ~fD~v~~~~~l~~l~~--~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~ 171 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPA--DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT 171 (203)
T ss_dssp SEEEEEEESCGGGSCH--HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred CEEEEEECcchhhCCH--HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence 8999999888887742 1456789999999999998 3332221 135789999988 88764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-10 Score=122.96 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=77.4
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..++++ .|+++|++ .++..++ +.+...++. +.+..+|+..++++ ++||+|+|... .
T Consensus 64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~-~ 139 (376)
T 3r0q_C 64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM-G 139 (376)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC-B
T ss_pred CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh-h
Confidence 368999999999999888875 58999999 7887776 445555554 78888999998887 89999998543 3
Q ss_pred ccc---cccceEEEEecccccCCceeeecCh
Q 007128 290 DWL---QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~---~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++. .....++.++.++|||||+++++..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 333 2234588899999999999998643
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-10 Score=121.97 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=75.3
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc--
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR-- 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l-- 288 (617)
.+|||||||+|.++..+++. .|+++|+++ ++..++ +.....+. ++.+..+|+..+++++++||+|++..+.
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence 68999999999999888765 589999996 776665 34444443 5778888999999988899999986521
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+++......++.++.|+|||||+++..
T Consensus 144 l~~~~~~~~~l~~~~~~LkpgG~lip~ 170 (340)
T 2fyt_A 144 LLFESMLDSVLYAKNKYLAKGGSVYPD 170 (340)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCHHHHHHHHHHHHhhcCCCcEEEcc
Confidence 222333345888999999999999853
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-11 Score=125.30 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=82.5
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhh---hhcccCC-cchhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWC---EAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~---e~~~~~p-~tfDlvh~~ 527 (617)
.-.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ |+-..++..+ +.++ ++ ++||+|++.
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 157 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQ 157 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-CCCCCEeEEEec
Confidence 3347999999999999999986 65 5666664 5777666554 3211111111 2223 33 899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhcccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~ 581 (617)
.++.|+. ++..+|.|+.|+|||||++++.+... ..+++.+++...+++.+
T Consensus 158 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 229 (297)
T 2o57_A 158 DAFLHSP----DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTL 229 (297)
T ss_dssp SCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEE
T ss_pred chhhhcC----CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEE
Confidence 9999886 68899999999999999999987531 23346667777777664
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-10 Score=113.02 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=77.6
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++... ...+ ++.+..+|..
T Consensus 57 ~~~~~~~~~~~~------~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~ 126 (231)
T 1vbf_A 57 NLGIFMLDELDL------HK--GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGT 126 (231)
T ss_dssp HHHHHHHHHTTC------CT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGG
T ss_pred HHHHHHHHhcCC------CC--CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcc
Confidence 344556666654 33 368999999999999988875 5899999887776665332 2223 6677777876
Q ss_pred ccCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 271 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.....+++||+|++..++.|.. .++.++|+|||+++++.+
T Consensus 127 ~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 127 LGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred cccccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEc
Confidence 6333467899999987754432 368999999999999754
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-11 Score=118.65 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH-----HhC-CCcccccccccc-cC--CCCCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL-----ERG-IPAYLGVLGTKR-LP--YPSRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~-----~rg-~~~~~~~~d~~~-lp--f~~~sFDl 281 (617)
..+|||||||+|.++..|++. .|+|+|+++.++..++.+... ..+ .++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 368999999999999998865 589999999988877644322 122 357788888876 77 78899999
Q ss_pred ccccccccccccc--------cceEEEEecccccCCceeeecCh
Q 007128 282 AHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 282 V~~s~~l~h~~~~--------~~~~L~el~RvLrPGG~lvis~p 317 (617)
|++... .+|... ...+++++.++|||||.|++.+.
T Consensus 127 v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 127 MFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 986543 223211 02488999999999999999743
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-11 Score=122.62 Aligned_cols=96 Identities=8% Similarity=0.112 Sum_probs=71.5
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.|++.+.++.- +..+..-.+.++ ++++||+|++..++.|+.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVK-- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCS--
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCc--
Confidence 34699999999999999998766 5566663 577776665521 111111112233 368999999999999876
Q ss_pred CCCcccchhhccccccCcceEEEecC
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++..+|.|+.|+|||||++++...
T Consensus 132 --d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 132 --EPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEec
Confidence 788999999999999999999754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-10 Score=118.93 Aligned_cols=116 Identities=9% Similarity=0.123 Sum_probs=85.6
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh-CC-CcccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER-GI-PAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r-g~-~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++... ... +. ++.+..+|+.. ++++++||+|++.
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-- 186 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-- 186 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC--
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEEc--
Confidence 368999999999999888764 4899999998877766433 333 33 47777888776 6677899999862
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. .++..+++++.++|||||+++++++... ..+++.+.+++.||..+.
T Consensus 187 ---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 187 ---I-PDPWNHVQKIASMMKPGSVATFYLPNFD--------QSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp ---C-SCGGGSHHHHHHTEEEEEEEEEEESSHH--------HHHHHHHHSGGGTEEEEE
T ss_pred ---C-cCHHHHHHHHHHHcCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCeEEE
Confidence 2 2335799999999999999999875431 124566667778885543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.2e-11 Score=119.20 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=72.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhc
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~ 536 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.|++.+.++.-+..++.-.+.++ ++ ++||+||+..++.|+.
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~-- 108 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHFS-- 108 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGCS--
T ss_pred CCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhcc--
Confidence 45799999999999999999876 5666664 577776666642222222123334 44 8999999999999886
Q ss_pred CCCcccchhhccccccCcceEEEecCh
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++..+|.|+.|+|| ||++++.+..
T Consensus 109 --~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 109 --HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp --SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred --CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 88999999999999 9988776654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-11 Score=117.82 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=74.8
Q ss_pred CccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccC--Ccchhhhhhhhhh
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTY--PRTYDLLHAWTVF 530 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~--p~tfDlvh~~~~~ 530 (617)
....-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- .+.++..+.++..+ +++||+|.|..++
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l 124 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVL 124 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCG
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHH
Confidence 334455799999999999999999864 6777774 577777766532 11222222222222 3999999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
.|+.. ...+..+|.++.|+|||||.+++.++..
T Consensus 125 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 125 YYLED-MTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GGSSS-HHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HhCCC-HHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 98861 1122567999999999999999976544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.4e-11 Score=122.22 Aligned_cols=96 Identities=9% Similarity=0.156 Sum_probs=66.9
Q ss_pred hhHHHhhhcchhhHhhh----cC--CceEEEEeecCCC-CCceEEEeec-----ccccch-----hhhhhhcc-----cC
Q 007128 460 RNLMDMKAHLGSFAAAL----KE--KDVWVMSVVPEDG-PNTLKLIYDR-----GLIGSI-----HNWCEAYS-----TY 517 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L----~~--~~~~v~~v~~~~~-~~~l~~~~~r-----gl~~~~-----~~~~e~~~-----~~ 517 (617)
.+|||+|||+|.++..+ +. .++.| .++.+|. ++|++.+.++ |+ ..+ +.-.++++ .+
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v-~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTTT
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCcee-eEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcccc
Confidence 36999999999876533 32 13321 3467773 6888877665 22 111 11112332 13
Q ss_pred -CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 518 -PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 518 -p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+++||+|+|..++.|+. |+..+|.||.|+|||||+++|..
T Consensus 132 ~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCCEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 38999999999999887 88999999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-11 Score=120.02 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=70.8
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhh---hhcccCC-cchhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWC---EAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~---e~~~~~p-~tfDlvh~~ 527 (617)
.-.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ |+...+...+ +.++ ++ ++||+|++.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 136 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-FEDASFDAVWAL 136 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-CCCCCccEEEEe
Confidence 3347999999999999999874 55 5666664 5666666554 3311111111 2222 33 899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+|.|+. +...+|.|+.|+|||||.++|.+.
T Consensus 137 ~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 137 ESLHHMP----DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp SCTTTSS----CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhCC----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999886 678999999999999999999874
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-10 Score=122.83 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccC-CCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLP-YPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lp-f~~~sFDlV~~s~~ 287 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++. ...+.++ .+.+..+|....+ +..+.||+|++.++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARK-TIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHH-HHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 479999999999999888765 5788898 666666653 3333343 3677888887765 13356999999998
Q ss_pred ccccccc-cceEEEEecccccCCceeeecChhhhcC--CHHHH----------------HHHHHHHHHHHHhhhhhhh
Q 007128 288 RIDWLQR-DGILLLELDRLLRPGGYFAYSSPEAYAQ--DEEDL----------------RIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 288 l~h~~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~--~~~~~----------------~~w~~l~~l~~~~gf~~v~ 346 (617)
+++|.++ ...+|+++.++|+|||++++..+..... .+... ...+++.++++++||+++.
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 7776543 2569999999999999999864321110 00000 0016788999999998765
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-10 Score=110.34 Aligned_cols=123 Identities=15% Similarity=0.003 Sum_probs=84.1
Q ss_pred ccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--C
Q 007128 187 FHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--P 261 (617)
Q Consensus 187 F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~ 261 (617)
+......+.+.+.+.+.. . .+..+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ +
T Consensus 24 ~rp~~~~~~~~~~~~l~~------~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~ 95 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIGP------Y-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIAITKEPEK 95 (187)
T ss_dssp SCCCCHHHHHHHHHHHCS------C-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHTCGGG
T ss_pred cCcCHHHHHHHHHHHHHh------h-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcc
Confidence 344455666677776642 1 12368999999999998877654 58999999988887774 3334444 3
Q ss_pred ccccccccccc----CCCCCccccccccccccccccccceEEEEe--cccccCCceeeecChhh
Q 007128 262 AYLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 262 ~~~~~~d~~~l----pf~~~sFDlV~~s~~l~h~~~~~~~~L~el--~RvLrPGG~lvis~p~~ 319 (617)
+.+..+|+... ++.+++||+|++... ++. ......+..+ .++|+|||++++..+..
T Consensus 96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 96 FEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred eEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCc-hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 67777776552 233678999998765 222 2223456666 89999999999976554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-11 Score=115.94 Aligned_cols=95 Identities=13% Similarity=0.263 Sum_probs=67.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-cchhhhhhhccc--CCcchhhhhhhh-hhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-GSIHNWCEAYST--YPRTYDLLHAWT-VFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-~~~~~~~e~~~~--~p~tfDlvh~~~-~~~~~ 533 (617)
.+|||+|||+|.++..|++. . +|+.+|. +.+++.+.++.- . ..+.-.+.++.. ++++||+|.+.. ++.|+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 110 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYL 110 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGC
T ss_pred CeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhc
Confidence 57999999999999999987 3 6777774 677777665521 0 011111122222 348999999876 88877
Q ss_pred hhcCCCcccchhhccccccCcceEEE
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
. +..++..+|.++.|+|||||.+++
T Consensus 111 ~-~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 111 Q-TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp C-SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3 112567899999999999999998
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-10 Score=116.81 Aligned_cols=119 Identities=18% Similarity=0.075 Sum_probs=86.5
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCC---CCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYP---SRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~---~~sFDlV~~s~ 286 (617)
..+|||||||+|..+..|+.. .|+++|+++.++..++. .+.+.++ ++.+..+|++.++.. +++||+|+|..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 468999999999998887753 59999999988887773 4444555 478888888888753 47999999754
Q ss_pred cccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
+ .+...++.++.++|||||++++..... .. ....++...++..||+..
T Consensus 160 ~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~---~~---~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 160 V-----APLCVLSELLLPFLEVGGAAVAMKGPR---VE---EELAPLPPALERLGGRLG 207 (249)
T ss_dssp S-----CCHHHHHHHHGGGEEEEEEEEEEECSC---CH---HHHTTHHHHHHHHTEEEE
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEEeCCC---cH---HHHHHHHHHHHHcCCeEE
Confidence 2 223468889999999999988743211 11 113456667778888654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-10 Score=120.19 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=77.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++.+.. +.++ .+.+..+|+...|+++. |+|++..++
T Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vl 266 (359)
T 1x19_A 191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKESYPEA--DAVLFCRIL 266 (359)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTSCCCCC--SEEEEESCG
T ss_pred CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccCCCCCC--CEEEEechh
Confidence 368999999999999988865 5789999 888877764333 3333 37788888888877753 999999987
Q ss_pred cccccc-cceEEEEecccccCCceeeecC
Q 007128 289 IDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
++|.++ ...+|+++.++|||||++++.+
T Consensus 267 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 267 YSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 777542 3568999999999999998864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-10 Score=112.98 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=85.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ ++.+..+|.... +++++||+|+++...+.
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred CEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 58999999999999888743 69999999988887774 3444454 477777787653 44678999998732111
Q ss_pred ------------cc------------cccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 291 ------------WL------------QRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ------------~~------------~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
+. .....++.++.++|+|||++++..... . -+++.+++++.||+.+.
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~------~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---Q------GEAVRQAFILAGYHDVE 259 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---C------HHHHHHHHHHTTCTTCC
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch---H------HHHHHHHHHHCCCcEEE
Confidence 11 112347788999999999999974321 1 14677788889997543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-11 Score=121.23 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=72.3
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.-.+|||+|||+|.++..|++++. .|+.+|. +.|++.+.++ |+ +-.+..-.+.++ ++ ++||+|++..+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIA 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCCCCEEEEEEhhh
Confidence 345799999999999999998865 6777774 6777776654 22 111111112233 44 89999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.|+. ++..+|.|+.|+|||||++++.+.
T Consensus 113 l~~~~----d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 113 AHHFP----NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhcC----CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99886 788999999999999999999753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-11 Score=122.94 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=75.1
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.-.+|||+|||+|.++..|++. +. +|+.+|. +.+++.|.++ |+-..++..+.++..++++||+|++..+|.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~ 148 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFE 148 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHH
Confidence 3347999999999999999987 65 5666674 6777777665 332222222333333479999999999999
Q ss_pred hhhhc-----CCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKR-----GCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~-----~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|+.++ .-++..+|.++.|+|||||.++|.+.
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 88531 12346899999999999999999775
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-10 Score=112.67 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=85.8
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++.. +...+++ +.+...|+... +++++||+|+++.
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~- 170 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN-IKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL- 170 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS-
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH-HHHcCCCCceEEEECchhhc-cCCCCcCEEEECC-
Confidence 368999999999999888765 489999999888777643 3334443 67778887744 7778999998632
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh--hhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC--WRIAA 346 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g--f~~v~ 346 (617)
.++..++.++.++|+|||++++..+... ...++.+.+++.| |..+.
T Consensus 171 -----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 171 -----PQPERVVEHAAKALKPGGFFVAYTPCSN--------QVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp -----SCGGGGHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHTGGGBSCCE
T ss_pred -----CCHHHHHHHHHHHcCCCCEEEEEECCHH--------HHHHHHHHHHHcCCCccccE
Confidence 2335689999999999999999754431 1355677778888 86543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-11 Score=123.94 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ |+...+...+.++..+|++||+|++..+|.|
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 347999999999999999987 66 5666664 5777777665 3322222223344445689999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.. .++..+|.|+.|+|||||.+++.+.
T Consensus 168 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 168 FGH--ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp TCG--GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred cCH--HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 832 2678999999999999999999765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-10 Score=107.93 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=82.3
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc-cc-chhhhhhhccc---CCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL-IG-SIHNWCEAYST---YPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl-~~-~~~~~~e~~~~---~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ |+ +- ...|..+.++. .+++||+|.++
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPGV---SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTTE---EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CEEEEecCCHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 47999999999999999986 44 5666664 6777777655 21 11 12233333332 22799999985
Q ss_pred hhh------hhhhhc------CCC----------cccchhhccccccCcce-EEEecChhHHHHHHHhhh--hccccccc
Q 007128 528 TVF------SDIEKR------GCS----------GEDLLLEMDRILRPTGF-VIIRDKQSVVDFVKKYLR--ALNWEAVA 582 (617)
Q Consensus 528 ~~~------~~~~~~------~c~----------~~~~l~Em~RiLrPgG~-~ii~~~~~~~~~~~~~~~--~~~w~~~~ 582 (617)
--| .++... ... +..++.++.|+|||||+ +++..+....+++.+++. ..+|..+
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~- 187 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV- 187 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC-
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE-
Confidence 333 221110 001 16788999999999999 777777777888999999 8888775
Q ss_pred ccccCCCCCCCCCCeEEEEEEec
Q 007128 583 TTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+.. . ..+..++++++|+
T Consensus 188 ~~~~--~---~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVK--D---LRGIDRVIAVTRE 205 (215)
T ss_dssp CEEE--C---TTSCEEEEEEEEC
T ss_pred EEEE--e---cCCCEEEEEEEEc
Confidence 3332 1 1345889998874
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-11 Score=113.48 Aligned_cols=96 Identities=10% Similarity=0.190 Sum_probs=74.0
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..++.. .|+++|+++.+++.++. .+...|+...+...|.... .+.++||+|++..++ |+
T Consensus 51 ~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~-~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L-Hl 127 (200)
T 3fzg_A 51 SSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS-IIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML-PV 127 (200)
T ss_dssp SEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH-HHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH-HH
T ss_pred CeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH-Hh
Confidence 58999999999999988443 69999999999988874 4555566544444565444 355789999988775 45
Q ss_pred ccccceEEEEecccccCCceeee
Q 007128 292 LQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvi 314 (617)
.++....+.++.+.|+|||+++-
T Consensus 128 L~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 128 LKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp HHHTTCCHHHHHHTCEEEEEEEE
T ss_pred hhhhHHHHHHHHHHhCCCCEEEE
Confidence 56667788899999999998875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-10 Score=116.78 Aligned_cols=126 Identities=11% Similarity=0.087 Sum_probs=79.0
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC---CCCCcccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP---YPSRSFELAHCS 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp---f~~~sFDlV~~s 285 (617)
++.+|||+|||+|.++..+++. .|+++|+++.++.... +.+.++ .++.+..+|+.... ...++||+|++.
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~-~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL-LVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH-HHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhc-CCeEEEEcccccchhhhccccceEEEEec
Confidence 3479999999999999888764 5999999997764432 344443 46777777876532 124689999976
Q ss_pred ccccccccccceEEEEecccccCCceeeecChhhh---cCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAY---AQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~---~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
.. . ......++..+.++|||||+|+++..... ...++ +.+++....+++.||+++.
T Consensus 154 ~a-~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~--e~~~~~~~~L~~~gf~~~~ 212 (232)
T 3id6_C 154 IA-Q--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPK--EIYKTEVEKLENSNFETIQ 212 (232)
T ss_dssp CC-C--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSS--SSTTHHHHHHHHTTEEEEE
T ss_pred CC-C--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHH--HHHHHHHHHHHHCCCEEEE
Confidence 43 2 22212244556669999999999742211 11111 1123455566677887654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.7e-10 Score=116.93 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=80.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--h---hhhhccCCCccchhhhHHHHHhCC-Cccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--D---VITMSLAPNDVHQNQIQFALERGI-PAYLGV 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~---V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~ 266 (617)
...+.+.+.+.. .++ .+|||||||+|.++..+++. . |+++|+++.++..++.. +...++ ++.+..
T Consensus 62 ~~~~~l~~~l~~------~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~g~~~v~~~~ 132 (317)
T 1dl5_A 62 SLMALFMEWVGL------DKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VERLGIENVIFVC 132 (317)
T ss_dssp HHHHHHHHHTTC------CTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEE
T ss_pred HHHHHHHHhcCC------CCc--CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEE
Confidence 344556666654 333 68999999999999888764 3 99999999888777643 333444 477788
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+|....+.++++||+|++..++.|.. .++.++|||||+++++..
T Consensus 133 ~d~~~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 133 GDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred CChhhccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 88877655667899999887754432 468899999999999743
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-11 Score=115.35 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=71.1
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
.-.+|||+|||+|.++..|++.+. +++.+|. +.+++.+.++.. .+.+.+.. ..++ ++||+|++..++.|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLDHVVLGDIETMD---MPYEEEQFDCVIFGDVLEH 105 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSSEEEESCTTTCC---CCSCTTCEEEEEEESCGGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCcEEEcchhhcC---CCCCCCccCEEEECChhhh
Confidence 335799999999999999999865 5666664 566665555432 22222111 2244 89999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. +...+|.++.|+|||||++++..+
T Consensus 106 ~~----~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 106 LF----DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp SS----CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred cC----CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 86 678999999999999999999864
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-11 Score=117.79 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=70.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc--c---ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG--L---IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg--l---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++- . +-.++.-.+.++ ++ ++||+|++..+++
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLWH 115 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCchh
Confidence 34799999999999999999876 5666663 57777666551 1 111111112333 33 8999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|+. +...+|.|+.|+|||||++++.
T Consensus 116 ~~~----~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVP----DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCT----THHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC----CHHHHHHHHHHHCCCCcEEEEE
Confidence 876 7889999999999999999986
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-10 Score=116.46 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=74.7
Q ss_pred eEEEeecccc---ccccccccc----chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-----------CCCC
Q 007128 216 RTVLDVGCGV---ASFGAYLLS----SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-----------YPSR 277 (617)
Q Consensus 216 ~~VLDVGCG~---G~~~~~L~~----~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-----------f~~~ 277 (617)
.+|||||||+ |.++..+.+ ..|+++|+++.++..++.... ...++.+..+|+.+.+ ++..
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 6899999999 987665543 369999999988887764432 1235677777875421 3334
Q ss_pred ccccccccccccccccc-cceEEEEecccccCCceeeecChhh
Q 007128 278 SFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
+||+|++..+++|+.+. ...+|+++.++|+|||+|+++....
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 89999988775444432 4579999999999999999986554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-11 Score=113.55 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=79.1
Q ss_pred ceeEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCC---CCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY---PSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf---~~~sFDlV~~s~~l~h 290 (617)
++.+|||||||. + ++|+++.|+..++.+.. .++.+.++|+..+++ ++++||+|+|+.+++|
T Consensus 12 ~g~~vL~~~~g~-----------v-~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~ 75 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------S-PVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHKESSFDIILSGLVPGS 75 (176)
T ss_dssp TTSEEEEEECTT-----------S-CHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC
T ss_pred CCCEEEEecCCc-----------e-eeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCCCCCEeEEEECChhhh
Confidence 347899999986 2 37777777665553221 136778889988887 7899999999887554
Q ss_pred cccccceEEEEecccccCCceeeecChhhhcCC-HHHHHHHHHHHHHHHHhhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD-EEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~-~~~~~~w~~l~~l~~~~gf 342 (617)
...+...++++++|+|||||+|++..+...... .......+++.+.++++||
T Consensus 76 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 76 TTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 426667899999999999999999654321110 0000012678889999999
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-11 Score=120.95 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=80.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC--Ccchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ .+...+.++..+ +++||+|.+..+|.|
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFMF 196 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchhh
Confidence 4699999999999999999877 5666664 5666665554 32 112222222222 589999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh--------------HHHHHHHhhhhcccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------~~~~~~~~~~~~~w~~~ 581 (617)
+... +...+|.++.|+|||||.++|..... ..+++++++.. |+.+
T Consensus 197 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 255 (286)
T 3m70_A 197 LNRE--RVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFL 255 (286)
T ss_dssp SCGG--GHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred CCHH--HHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEE
Confidence 7422 56689999999999999987754322 24567888777 7764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-10 Score=108.04 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=76.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-Cccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGV 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~ 266 (617)
.....+.+.+.. .. +.+|||||||+|.++..+++. .|+++|+++.++..++.... ..+. ++.+..
T Consensus 64 ~~~~~~~~~~~~------~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~ 134 (215)
T 2yxe_A 64 HMVGMMCELLDL------KP--GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR-KLGYDNVIVIV 134 (215)
T ss_dssp HHHHHHHHHTTC------CT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEE
T ss_pred HHHHHHHHhhCC------CC--CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEE
Confidence 344455555544 33 368999999999998888763 48899999888777764333 3333 466666
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.|.......+++||+|++..++.+.. .++.++|||||++++..+.
T Consensus 135 ~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 135 GDGTLGYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SCGGGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred CCcccCCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 77643222257899999887754432 4789999999999997543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-10 Score=114.47 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=83.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-------ccchhhhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-------IGSIHNWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-------~~~~~~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ ++ +-.+..-.+.++.-+++||+|.+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3699999999999999999876 5666663 5666655553 22 111111112222113899999999
Q ss_pred hhhhhhhhcCCCcc---cchhhccccccCcceEEEecCh-----------------------------------------
Q 007128 528 TVFSDIEKRGCSGE---DLLLEMDRILRPTGFVIIRDKQ----------------------------------------- 563 (617)
Q Consensus 528 ~~~~~~~~~~c~~~---~~l~Em~RiLrPgG~~ii~~~~----------------------------------------- 563 (617)
.++.|+. +.+ .+|.++.|+|||||.+++.+..
T Consensus 109 ~~l~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 109 AFLTSVP----DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp SCGGGCC----CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred chhhcCC----CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 9999876 555 8999999999999999998541
Q ss_pred hHHHHHHHhhhhcccccc
Q 007128 564 SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 564 ~~~~~~~~~~~~~~w~~~ 581 (617)
-..+++++++++.+|+.+
T Consensus 185 ~~~~~l~~ll~~aGf~~~ 202 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEID 202 (235)
T ss_dssp BCHHHHHHHHHTTTEEEE
T ss_pred CCHHHHHHHHHHcCCEEE
Confidence 136789999999999986
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-10 Score=119.06 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH----HhCCCcccccccccccCC--CCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL----ERGIPAYLGVLGTKRLPY--PSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~----~rg~~~~~~~~d~~~lpf--~~~sFDlV~~ 284 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++..+.. ....++.+..+|...++. ++++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 468999999999999988765 589999999887776643321 112356777788776654 4689999998
Q ss_pred ccccccccccc----ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 285 SRCRIDWLQRD----GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 285 s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
... .++.... ..+++++.|+|||||++++...... ... .....+.+.+++.||..+
T Consensus 176 d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-~~~---~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 176 DTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-LDL---ELIEKMSRFIRETGFASV 235 (304)
T ss_dssp ECC----------CCHHHHHHHHHHEEEEEEEEEEECCTT-TCH---HHHHHHHHHHHHHTCSEE
T ss_pred CCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-cch---HHHHHHHHHHHhCCCCcE
Confidence 644 2332211 3578899999999999999643321 121 224667788888888543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-10 Score=117.28 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=83.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~ 267 (617)
.|.+.+.+.+.. .. +.+|||||||+|.++..+++. .|+++|+++ ++..++ +.+...++ ++.+..+
T Consensus 37 ~y~~~i~~~l~~------~~--~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~ 106 (348)
T 2y1w_A 37 TYQRAILQNHTD------FK--DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPG 106 (348)
T ss_dssp HHHHHHHHTGGG------TT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEES
T ss_pred HHHHHHHhcccc------CC--cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEc
Confidence 455566655543 22 368999999999999888765 589999996 665554 34444454 4778888
Q ss_pred cccccCCCCCccccccccccccccccc-cceEEEEecccccCCceeeecChh
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
|...++++ ++||+|++.....|+... ....+.++.++|||||++++....
T Consensus 107 d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 107 KVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp CTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred chhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 88888776 589999988765665433 235677899999999999986443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-10 Score=122.48 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=72.3
Q ss_pred eeEEEeeccc------ccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC------CC
Q 007128 215 LRTVLDVGCG------VASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP------SR 277 (617)
Q Consensus 215 ~~~VLDVGCG------~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~------~~ 277 (617)
..+||||||| +|..+..++.. .|+++|+++.+. ....++.+.++|+.++||. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 3689999999 66666555543 599999999762 1234678889999998887 78
Q ss_pred ccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 278 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+||+|+|..+ |+..+...+|+++.|+|||||++++.+..
T Consensus 288 sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999998643 44445567999999999999999997654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-10 Score=106.16 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--------CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--------YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--------f~~~sFDlV 282 (617)
.+|||+|||+|.++..+++. .++++|+++ ++.. .++.+..+|....+ +++++||+|
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence 68999999999998888754 588999998 6532 24556677777766 677899999
Q ss_pred ccccccccccccc-----------ceEEEEecccccCCceeeecChh
Q 007128 283 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+++.. +++.... ..++.++.++|+|||.++++.+.
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 93 MSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EECCC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 98765 3333222 46899999999999999997653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-10 Score=109.79 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=79.1
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Cccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~ 266 (617)
....+.+.+.+.. . .. ..+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+..
T Consensus 16 ~~~~~~~~~~l~~----~-~~--~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~ 87 (177)
T 2esr_A 16 DKVRGAIFNMIGP----Y-FN--GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLK 87 (177)
T ss_dssp --CHHHHHHHHCS----C-CC--SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEEC
T ss_pred HHHHHHHHHHHHh----h-cC--CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEE
Confidence 3444555566542 0 22 358999999999999888765 58999999988877763 3444444 366777
Q ss_pred ccccc-cCCCCCccccccccccccccccccceEEEEec--ccccCCceeeecChhh
Q 007128 267 LGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFAYSSPEA 319 (617)
Q Consensus 267 ~d~~~-lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~--RvLrPGG~lvis~p~~ 319 (617)
+|+.. ++..+++||+|++.... +. ......+..+. ++|+|||++++..+..
T Consensus 88 ~d~~~~~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 88 MEAERAIDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SCHHHHHHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CcHHHhHHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 77766 45445679999987542 21 12234555555 9999999999976544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.9e-11 Score=118.95 Aligned_cols=111 Identities=15% Similarity=0.278 Sum_probs=74.9
Q ss_pred HHHHhhccccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcc
Q 007128 445 SYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYS 515 (617)
Q Consensus 445 ~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~ 515 (617)
.+...+........-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ |+ +-.+..-.+.++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 100 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP 100 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC
Confidence 33444433232334457999999999999999876 45 4555553 5666655554 22 111111112233
Q ss_pred cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 516 TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 516 ~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.-+++||+|++..++.|+. ++..+|.++.|+|||||++++.+.
T Consensus 101 ~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 101 FEDSSFDHIFVCFVLEHLQ----SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp SCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeeEEEEechhhhcC----CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2238999999999999886 778999999999999999999763
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-10 Score=112.48 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=76.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHH-h--CCCcccccccccccCCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALE-R--GIPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~-r--g~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++...... . ..++.+..+|+...++++++||+|++..
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~- 179 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM- 179 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES-
T ss_pred CEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC-
Confidence 68999999999999888763 4899999998887776444433 1 2357788889888888888999998632
Q ss_pred ccccccccceEEEEecccccCCceeeecChhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.++..++.++.++|+|||++++..+..
T Consensus 180 -----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 180 -----LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp -----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred -----cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 233578999999999999999986643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-10 Score=110.16 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=72.0
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhC------CCcccccccccccCCCCCcccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERG------IPAYLGVLGTKRLPYPSRSFELAH 283 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg------~~~~~~~~d~~~lpf~~~sFDlV~ 283 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++.... ..+ .++.+..+|....+..+++||+|+
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR-KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 368999999999998888753 58999999988877764333 322 256777778776665667899999
Q ss_pred ccccccccccccceEEEEecccccCCceeeecCh
Q 007128 284 CSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 284 ~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+...+. .++.++.++|||||+++++..
T Consensus 157 ~~~~~~-------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 157 VGAAAP-------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ECSBBS-------SCCHHHHHTEEEEEEEEEEES
T ss_pred ECCchH-------HHHHHHHHhcCCCcEEEEEEe
Confidence 776532 345688999999999999754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-10 Score=110.93 Aligned_cols=120 Identities=13% Similarity=-0.036 Sum_probs=83.0
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC-Cccccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI-PAYLGV 266 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~ 266 (617)
...+.+.+.+.+.. . .+..+|||+|||+|.++..++.+ .|+++|+++.++..++. .+...++ ++.+..
T Consensus 38 ~~~~~~~l~~~l~~------~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~-~~~~~~~~~v~~~~ 109 (202)
T 2fpo_A 38 TDRVRETLFNWLAP------V-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIK-NLATLKAGNARVVN 109 (202)
T ss_dssp CHHHHHHHHHHHHH------H-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEEC
T ss_pred HHHHHHHHHHHHHh------h-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEE
Confidence 34455555555542 1 01258999999999999876554 58999999998888874 4444454 677888
Q ss_pred ccccc-cCCCCCccccccccccccccccccceEEEEec--ccccCCceeeecChhhh
Q 007128 267 LGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 267 ~d~~~-lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~--RvLrPGG~lvis~p~~~ 320 (617)
+|+.. ++..+++||+|++... ++. .....++.++. |+|+|||+++++.....
T Consensus 110 ~D~~~~~~~~~~~fD~V~~~~p-~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 110 SNAMSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp SCHHHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred CCHHHHHhhcCCCCCEEEECCC-CCC-CcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 88766 5666779999998754 332 22234666664 56999999999865543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.5e-11 Score=119.28 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=83.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhcc------------ccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEE
Q 007128 431 MFEKDTESWRNRVDSYWNLLSP------------KIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKL 497 (617)
Q Consensus 431 ~F~~D~~~Wk~~V~~y~~~l~~------------~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~ 497 (617)
.|...++.|......|++.... .+....-.+|||+|||+|.++..|++++. .|+.+|. +.|++.
T Consensus 6 ~~~s~a~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~ 82 (261)
T 3iv6_A 6 ITNSKAEAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDD 82 (261)
T ss_dssp TTCTTHHHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHH
Confidence 3455556666555555543221 11122234699999999999999999887 5677774 688888
Q ss_pred Eeeccc----ccchhhhhhhc-ccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 498 IYDRGL----IGSIHNWCEAY-STYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 498 ~~~rgl----~~~~~~~~e~~-~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+.++.- -+.+.+..... ...+.+||+|.|+.+++|+... +...+|.+|.|+| |||.++++-..
T Consensus 83 Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~--~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 83 LAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTE--EARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp HHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHH--HHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHH--HHHHHHHHHHHhC-cCcEEEEEecc
Confidence 776632 11111111100 1224799999999999876422 4667999999999 99999998654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-10 Score=115.59 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=83.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhh---hhcccCCcchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWC---EAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~---e~~~~~p~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..|++.+. .+|+.+|. +.+++.+.++ |+-..+...+ +.++.-+++||+|+|..++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 34699999999999999998743 14555563 5676666555 3311122122 2333113899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh---------------------hHHHHHHHhhhhcccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ---------------------SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~---------------------~~~~~~~~~~~~~~w~~~ 581 (617)
.|+ ++..+|.++.|+|||||++++.+.. ...+++.+++++.+|+.+
T Consensus 125 ~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 125 YNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp GGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred eec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 876 5789999999999999999998742 024568888888898875
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-10 Score=117.50 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=80.6
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Ccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~ 267 (617)
.|.+.+.+.+.. ..+ .+|||||||+|.++..+++. .|+++|+++ ++..++ +.+...++ .+.+..+
T Consensus 25 ~y~~ai~~~~~~------~~~--~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~ 94 (328)
T 1g6q_1 25 SYRNAIIQNKDL------FKD--KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRG 94 (328)
T ss_dssp HHHHHHHHHHHH------HTT--CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEES
T ss_pred HHHHHHHhhHhh------cCC--CEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEEC
Confidence 455555544443 222 58999999999999888765 589999994 766665 34444454 3678888
Q ss_pred cccccCCCCCccccccccccccc--cccccceEEEEecccccCCceeeec
Q 007128 268 GTKRLPYPSRSFELAHCSRCRID--WLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h--~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|+..+++++++||+|+|...... .......++.++.++|+|||+++..
T Consensus 95 d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 95 KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp CTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred chhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 99989888889999998643222 2222345788889999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-10 Score=116.91 Aligned_cols=97 Identities=10% Similarity=0.137 Sum_probs=68.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-----cchhhhhhhccc--CCcchhhhhh-hhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-----GSIHNWCEAYST--YPRTYDLLHA-WTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-----~~~~~~~e~~~~--~p~tfDlvh~-~~~~ 530 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- . ..+...+.++.. ++++||+|.| ..++
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCccc
Confidence 799999999999999999876 5666774 678777766521 0 112222222222 2599999885 4666
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.++.. .+...+|.++.|+|||||.|+|...
T Consensus 162 ~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 162 NELDE--ADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp TTSCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCH--HHHHHHHHHHHHHcCCCcEEEEEee
Confidence 65431 1357899999999999999999653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-10 Score=115.16 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=71.4
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
.-.+|||+|||+|.++..|++. +. +|+.+|. +.|++.+.++.- +-.++.-.+.++ .+++||+|++..++.|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence 3457999999999999999876 55 4555563 577777665521 111111112233 24899999999999988
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
. ++..+|.|+.|+|||||++++..+
T Consensus 109 ~----~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 109 P----DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp T----THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred C----CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 6 788999999999999999999864
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-10 Score=119.96 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=85.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++ +. .++.+..+|+.. |++++ |+|++..++++
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~ 273 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----AF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHD 273 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CC-TTEEEEECCTTT-CCCCC--SEEEEESCGGG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----hc-CCCEEEecCCCC-CCCCC--CEEEEechhhc
Confidence 468999999999999999864 4677787 54554443 11 357788888776 77754 99999999777
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhhcC---CHH--H-------HH---------HHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQ---DEE--D-------LR---------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~---~~~--~-------~~---------~w~~l~~l~~~~gf~~v~ 346 (617)
|.++. ..+|++++++|||||++++.+...... ... . .. .-+++.++++++||+.+.
T Consensus 274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 351 (368)
T 3reo_A 274 WSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351 (368)
T ss_dssp BCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeE
Confidence 76542 368999999999999999864322110 000 0 00 015688889999997654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-10 Score=108.16 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=92.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCC-cchhhhhhh-hhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYP-RTYDLLHAW-TVFSDIEK 535 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p-~tfDlvh~~-~~~~~~~~ 535 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- +..++.-...++ ++ ++||+|++. .++.|+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQ-ISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSC-CCCCCEEEEEECCCCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCC-CCCCceeEEEECCcHHhhcCh
Confidence 4699999999999999998876 5556663 456555544421 111111111122 33 899999998 67776531
Q ss_pred cCCCcccchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccccccccC-CCCCC-CCCCeEEEEEEec
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAVATTADA-SSDSD-KDGDEVVFIVQKK 605 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~~~~~~~-~~~~~-~~~~~~~l~~~K~ 605 (617)
. +...+|.++.|+|||||.+++..... ..+++.++++..+++.+ ..... ...+. +..+..+++++|+
T Consensus 124 ~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 124 D--GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELE-NAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp H--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEE-EEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEe-eeecccccCcCCCCCcEEEEEEecC
Confidence 1 45789999999999999999976554 46789999999999885 33221 11221 2345667777774
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-10 Score=118.29 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=80.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc-c-------------------ccchhhhhhhcccCC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG-L-------------------IGSIHNWCEAYSTYP 518 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg-l-------------------~~~~~~~~e~~~~~p 518 (617)
.+|||+|||+|.++..|+++|. .|+.+|. +.|++.|.++. + ...+.-.+.++..+|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 3699999999999999999987 6777774 67877775442 1 012222233333222
Q ss_pred ----cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec-C-----------hhHHHHHHHhhhhcccccc
Q 007128 519 ----RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD-K-----------QSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 519 ----~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~-----------~~~~~~~~~~~~~~~w~~~ 581 (617)
++||+|.+..+|.++.. .+...++.||.|+|||||.+++.. . .-..+++..++.. .|+++
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~--~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINP--GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCG--GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred cccCCCEEEEEEhhhhhhCCH--HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 78999999888887742 245679999999999999996321 1 0135678888876 47763
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-09 Score=110.00 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=68.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--ccccccccccc---CCC---CCccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRL---PYP---SRSFELA 282 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~l---pf~---~~sFDlV 282 (617)
..+|||+|||+|.++..++.+ .|+++|+++.++..++. .+...++. +.+..+|+... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 468999999999988888754 59999999998888874 34444543 67777776552 444 2689999
Q ss_pred cccccccccc--------------cccceEEEEecccccCCceeeec
Q 007128 283 HCSRCRIDWL--------------QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 283 ~~s~~l~h~~--------------~~~~~~L~el~RvLrPGG~lvis 315 (617)
+|+...++.. .+...++.++.|+|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9874433221 01124678999999999998875
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-09 Score=108.89 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=90.1
Q ss_pred hhhHHHhhhcchhhHhhhc--CCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc---CCcchhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALK--EKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST---YPRTYDLLHA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~--~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~---~p~tfDlvh~ 526 (617)
-.+|||+|||+|.++..|+ ..+. .|+.+|. +.+++.+.++ |+ +-.++.-.+.++. .+.+||+|.|
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3469999999999999998 4455 4666664 5666666543 33 2233322233332 2479999998
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
..+ .++..++.++.|+|||||.+++.+... .++++.+.++..+++.+ .+..- .-+...+...+++++
T Consensus 148 ~~~--------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~-~~~~~-~~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 148 RAV--------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE-NIHSF-KLPIEESDRNIMVIR 217 (240)
T ss_dssp ECC--------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE-EEEEE-ECTTTCCEEEEEEEE
T ss_pred ecc--------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEe-EEEEE-ecCCCCCceEEEEEE
Confidence 552 267889999999999999999876433 45567777778888764 22210 112223456777888
Q ss_pred ecccccCC
Q 007128 604 KKIWLTSE 611 (617)
Q Consensus 604 K~~w~~~~ 611 (617)
|.-.++..
T Consensus 218 k~~~~~~~ 225 (240)
T 1xdz_A 218 KIKNTPKK 225 (240)
T ss_dssp ECSCCCTT
T ss_pred ecCCCCCC
Confidence 86555443
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-10 Score=107.79 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=75.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhh-hhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAW-TVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~-~~~ 530 (617)
.+|||+|||+|.++..|++++. .|+.+|. +.+++.|.++ |+ +-.+++-.+.+..++ ++||+|.++ ..+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 3699999999999999999866 5667774 6777777655 33 222333334444343 899999876 333
Q ss_pred hhhh----hcCCCcccchhhccccccCcceEEEecCh------hHHHHHHHhhhhcc---cccc
Q 007128 531 SDIE----KRGCSGEDLLLEMDRILRPTGFVIIRDKQ------SVVDFVKKYLRALN---WEAV 581 (617)
Q Consensus 531 ~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------~~~~~~~~~~~~~~---w~~~ 581 (617)
++.. ...-+...+|.|+.|+|||||.+++.... ...+.+.+++..+. |..+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAM 164 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 2100 00012346789999999999999987543 23345666666554 6653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-10 Score=115.80 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=82.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.... .|+.+|. +.+++.+.++ |+ +-.++.-.+.++.-+++||+|+|..++.
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 47999999999999999987431 5666664 5677666555 32 1111111133332138999999999998
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh---------------------hHHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ---------------------SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~---------------------~~~~~~~~~~~~~~w~~~ 581 (617)
|+ ++..+|.++.|+|||||++++.+.. ...+++.+++++.+++.+
T Consensus 126 ~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (257)
T 3f4k_A 126 NI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT 191 (257)
T ss_dssp CC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEE
T ss_pred hc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEE
Confidence 66 5789999999999999999998742 024567888888888875
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-10 Score=115.63 Aligned_cols=97 Identities=15% Similarity=0.275 Sum_probs=71.8
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.+..-.+.++ ++ ++||+|++..+
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYA 96 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESC
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCc
Confidence 344799999999999999998865 5666664 5676665544 22 111121123333 33 89999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+.|+. ++..+|.|+.|+|||||++++.+.
T Consensus 97 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 97 AHHFS----DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99876 789999999999999999999754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=108.62 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=77.0
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC-Cccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLG 268 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d 268 (617)
.....+.+.+.. ..+ .+|||||||+|.++..+++. .|+++|+++.++..++.... ..++ ++.+..+|
T Consensus 78 ~~~~~~~~~l~~------~~~--~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d 148 (235)
T 1jg1_A 78 HMVAIMLEIANL------KPG--MNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGD 148 (235)
T ss_dssp HHHHHHHHHHTC------CTT--CCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESC
T ss_pred HHHHHHHHhcCC------CCC--CEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECC
Confidence 344556666654 333 58999999999999988774 58999999887777664333 3333 46677777
Q ss_pred ccccCCCCC-ccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 269 TKRLPYPSR-SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 269 ~~~lpf~~~-sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
. ..+++++ .||+|++..++.++ ..++.++|+|||+++++.+.
T Consensus 149 ~-~~~~~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 149 G-SKGFPPKAPYDVIIVTAGAPKI-------PEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp G-GGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEECS
T ss_pred c-ccCCCCCCCccEEEECCcHHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 6 4556554 49999988764333 23789999999999997643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-10 Score=110.13 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=82.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC-Ccchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY-PRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~-p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++..|++.+. .+|+.+|. +.+++.+.++ |+-. +...+.++..+ +++||+|.++.++.++
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~~ 138 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEIL 138 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHHH
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHHH
Confidence 4699999999999999998754 25666664 5777766665 3211 22222232223 4999999998888753
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~~ 581 (617)
..++.++.|+|||||++++.+. ....+++.+++...+|+.+
T Consensus 139 -------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 139 -------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQID 180 (205)
T ss_dssp -------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEE
T ss_pred -------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceE
Confidence 5789999999999999999753 4467788999999999885
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-10 Score=118.54 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=85.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++ + ..++.+..+|+.. |++++ |+|++..++++
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~-~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~ 271 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----Q-FPGVTHVGGDMFK-EVPSG--DTILMKWILHD 271 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----C-CTTEEEEECCTTT-CCCCC--SEEEEESCGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----h-cCCeEEEeCCcCC-CCCCC--CEEEehHHhcc
Confidence 468999999999999998864 4677787 54544433 1 1357788888877 77754 99999999777
Q ss_pred cccc-cceEEEEecccccCCceeeecChhhhcC---CHH--------HHHH----------HHHHHHHHHHhhhhhhh
Q 007128 291 WLQR-DGILLLELDRLLRPGGYFAYSSPEAYAQ---DEE--------DLRI----------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~---~~~--------~~~~----------w~~l~~l~~~~gf~~v~ 346 (617)
|.++ ...+|++++++|||||++++........ ... .... -+++.++++++||+.+.
T Consensus 272 ~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 349 (364)
T 3p9c_A 272 WSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVK 349 (364)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEE
Confidence 7544 2468999999999999999864322110 000 0000 15688888999997654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=108.06 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=71.0
Q ss_pred eeEEEeecccccccccccccc----------hhhhhccCCCccchhhhHHHHHh-----CCCcccccccccccCCCC-Cc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----------DVITMSLAPNDVHQNQIQFALER-----GIPAYLGVLGTKRLPYPS-RS 278 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----------~V~gvDis~~dl~~a~~~~a~~r-----g~~~~~~~~d~~~lpf~~-~s 278 (617)
+.+|||||||+|.++..|++. .|+++|+++.++..++....... ..++.+..+|... ++++ ++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 368999999999998888762 58999999988877764443322 2356677777765 5554 78
Q ss_pred cccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 279 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 279 FDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
||+|++...+.+ ++.++.++|||||++++...
T Consensus 164 fD~I~~~~~~~~-------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 164 YNAIHVGAAAPD-------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEEECSCBSS-------CCHHHHHTEEEEEEEEEEES
T ss_pred ccEEEECCchHH-------HHHHHHHHhcCCCEEEEEEe
Confidence 999998766433 34678999999999999743
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-10 Score=108.28 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=72.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .++++|+++.++..++. .+...++ ++.+...|+..++ ++++||+|++...
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ-VQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc---
Confidence 58999999999999888754 58999999988877763 3334444 3777888887766 4578999997532
Q ss_pred cccccceEEEEecccccCCceeeec
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+...++.++.++|+|||++++.
T Consensus 142 --~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 --ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEE
Confidence 22356899999999999999986
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-10 Score=116.79 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=70.6
Q ss_pred chhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCCcchhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ +. +-.+..-.+.++ ++++||+|++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHA 97 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEECC
Confidence 3457999999999999999986 45 4555553 4565554443 11 111111112222 368999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++.|+. ++..+|.++.|+|||||++++.++.
T Consensus 98 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMT----TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCS----SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCC----CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999876 7789999999999999999998876
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-10 Score=121.82 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=67.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+ +-.++.-...+..-+++||+|.++..|++.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 3699999999999999999876 5666664 5666665543 22 111221111221112799999998888752
Q ss_pred hh-cCCCcccchhhccccccCcceEEEecCh
Q 007128 534 EK-RGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 534 ~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.. ..-+...++.++.|+|||||.++|....
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 10 0114457899999999999999997554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-09 Score=111.53 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred eeEEEeecccccccccccccc-hhhhhccCCCccchhhhHH--HHHhCCCcccc--cccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQF--ALERGIPAYLG--VLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~--a~~rg~~~~~~--~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..+++. .|+|+|+++ ++..+..+. ....+.++.+. ++|+..++ +++||+|+|..+ .
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~ 150 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-E 150 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-C
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-c
Confidence 379999999999999988875 699999998 543222110 01112245666 77888776 679999998754 2
Q ss_pred c---c-cccc--ceEEEEecccccCCc--eeeecChh
Q 007128 290 D---W-LQRD--GILLLELDRLLRPGG--YFAYSSPE 318 (617)
Q Consensus 290 h---~-~~~~--~~~L~el~RvLrPGG--~lvis~p~ 318 (617)
+ + .+.. ..+|.++.++||||| .|++..+.
T Consensus 151 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 151 SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 1 1 1111 127888999999999 99986544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.8e-10 Score=114.42 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=69.1
Q ss_pred eeEEEeecccccccccccccc-hhhhhccCCCccchhhhHH--HHHhCCCcccc--cccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-DVITMSLAPNDVHQNQIQF--ALERGIPAYLG--VLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-~V~gvDis~~dl~~a~~~~--a~~rg~~~~~~--~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..++++ .|+|+|+++ ++..+..+. ....+.++.+. ++|+..+| +++||+|+|..+ .
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~ 158 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-E 158 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-C
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-c
Confidence 479999999999999988875 699999998 543322110 00112256666 78888776 679999998755 2
Q ss_pred cc----ccccc--eEEEEecccccCCc--eeeecChh
Q 007128 290 DW----LQRDG--ILLLELDRLLRPGG--YFAYSSPE 318 (617)
Q Consensus 290 h~----~~~~~--~~L~el~RvLrPGG--~lvis~p~ 318 (617)
.. .+... .+|.++.++||||| .|++..+.
T Consensus 159 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 159 SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 11 11111 26888999999999 99986544
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-10 Score=118.63 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=70.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++++|+ +.++..++. . ..+.+..+|+.. ++++ ||+|++..+++|
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~ 279 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----L-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHN 279 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----C-TTEEEEECCTTT-CCCC--EEEEEEESSGGG
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----c-CCCEEEeCCccc-CCCC--CCEEEEeccccc
Confidence 368999999999999998875 3566687 655554431 1 246777888876 6664 999999998766
Q ss_pred cccccc--eEEEEecccccCCceeeecC
Q 007128 291 WLQRDG--ILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~~~--~~L~el~RvLrPGG~lvis~ 316 (617)
|.+. . .+|+++.++|||||++++.+
T Consensus 280 ~~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 WSDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 6543 4 79999999999999999874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-10 Score=119.00 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=82.8
Q ss_pred hhhHHHhhhcchhhHhhhc-C-CceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALK-E-KDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~-~-~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|++++.++ + .+. .|+.+|. +.|++.|.++ |+ ..+...+.+...+| ++||+|.+..+.
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA 198 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC
T ss_pred cCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc
Confidence 3479999999999886653 3 355 5666664 6888887766 54 33333333333344 899999864432
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChhHHHH----HHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF----VKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.+.+.++.|+.|+|||||.|++++......- +.+ ...-+|+.+..++. .+ .....|.+++|
T Consensus 199 -------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p--~~---~v~N~vv~a~k 263 (298)
T 3fpf_A 199 -------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLP--SG---KVNNTSVLVFK 263 (298)
T ss_dssp -------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECC--CT---TCCCEEEEEEE
T ss_pred -------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECC--CC---CcCcEEEEEEc
Confidence 2678999999999999999999986432111 101 12227777523332 21 33567888888
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-10 Score=109.82 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=72.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cCCC-----CCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LPYP-----SRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lpf~-----~~sFDlV 282 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++. .+...++ ++.+..+|+.. ++.. .++||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ-MLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH-HHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 58999999999999888763 58999999988887774 3344444 36777777644 3322 2689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecChh
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
++.....++... ..++.++ ++|||||++++....
T Consensus 139 ~~d~~~~~~~~~-~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 139 FLDHWKDRYLPD-TLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EECSCGGGHHHH-HHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEcCCcccchHH-HHHHHhc-cccCCCeEEEEeCCC
Confidence 987654444322 3466666 999999999997544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-10 Score=119.48 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=92.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhcc----cCCcchhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAYS----TYPRTYDLLHA 526 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~~----~~p~tfDlvh~ 526 (617)
...++|||+|||+|.++..|+++ +. .++.+|.+.+++.|.++ |+-..+.....++. .+|.+||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 34568999999999999999873 44 34444445666666554 33122222122222 25689999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------------------------HHHHHHHhhhhc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------------VVDFVKKYLRAL 576 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------------~~~~~~~~~~~~ 576 (617)
..+++++... +...+|.++.|+|||||.|+|.|..- ..+++++++++.
T Consensus 255 ~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A 332 (363)
T 3dp7_A 255 SQFLDCFSEE--EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA 332 (363)
T ss_dssp ESCSTTSCHH--HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred echhhhCCHH--HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence 9999866432 34578999999999999999976421 245688889999
Q ss_pred ccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 577 NWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 577 ~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+++.+ ++.+ . ......++.+.|.
T Consensus 333 Gf~~v-~~~~--~---~g~~~svi~~~~~ 355 (363)
T 3dp7_A 333 GLEVE-EIQD--N---IGLGHSILQCRLK 355 (363)
T ss_dssp TEEES-CCCC--C---BTTTBEEEEEEEC
T ss_pred CCeEE-EEEe--C---CCCCceEEEEeec
Confidence 99886 4443 1 1234667777664
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.9e-10 Score=114.85 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=93.4
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~ 526 (617)
+......+|||+|||+|.++..|++. +.. ++.+|.+.+++.+.++ |+-..+.....++ ..+|.+||+|++
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~ 241 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVL 241 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCe---EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEE
Confidence 45566788999999999999999863 332 3333445566555543 3311121111221 234568999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------------HHHHHHHhhhhccccccccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------------VVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------------~~~~~~~~~~~~~w~~~~~~ 584 (617)
..+++|.... +...+|.++.|+|||||+++|.|... ..+++++++++.+++.+ ++
T Consensus 242 ~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~-~~ 318 (332)
T 3i53_A 242 SAVLHDWDDL--SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR-AA 318 (332)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE-EE
T ss_pred ehhhccCCHH--HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE-EE
Confidence 9999977532 24789999999999999999987521 24578899999999986 45
Q ss_pred ccCCCCCCCCCCeEEEEEEe
Q 007128 585 ADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~K 604 (617)
.. .. . ..++.++|
T Consensus 319 ~~--~~----~-~~vie~r~ 331 (332)
T 3i53_A 319 HP--IS----Y-VSIVEMTA 331 (332)
T ss_dssp EE--CS----S-SEEEEEEE
T ss_pred EE--CC----C-cEEEEEee
Confidence 43 21 2 66777776
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-10 Score=115.34 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=85.3
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccc---
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSR--- 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~--- 286 (617)
.+|||+|||+|..+..|++. .|+++|+++.++..++. .+...++ ++.+..+|+..++..+++||+|++..
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 68999999999999888753 48999999988877764 3444455 57788888888775567899999731
Q ss_pred --cccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 287 --CRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 287 --~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
..++..++ ...+|.++.++|||||++++++-...+...+ ..+..++++.+|+.+
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene-----~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE-----FVIQWALDNFDVELL 270 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHSSEEEE
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhH-----HHHHHHHhcCCCEEe
Confidence 11211111 0357889999999999999975443322221 345666676676544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-10 Score=113.98 Aligned_cols=99 Identities=18% Similarity=0.328 Sum_probs=71.5
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhhhhhhc
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~~ 536 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++...-.+..-.+.++ ++ ++||+|.+..++.|+..
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS-
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCC-CCCCCEEEEEEcchhhhccc-
Confidence 34799999999999999999876 5666664 577777766643101111112233 33 89999999876665521
Q ss_pred CCCcccchhhccccccCcceEEEecChh
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++..+|.|+.|+|||||.+++.....
T Consensus 130 --~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 130 --NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred --cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 58899999999999999999987653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.5e-10 Score=108.49 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=72.2
Q ss_pred eEEEeecccccccccccccc---------hhhhhccCCCccchhhhHHHHHh-----CCCcccccccccccC----CCCC
Q 007128 216 RTVLDVGCGVASFGAYLLSS---------DVITMSLAPNDVHQNQIQFALER-----GIPAYLGVLGTKRLP----YPSR 277 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---------~V~gvDis~~dl~~a~~~~a~~r-----g~~~~~~~~d~~~lp----f~~~ 277 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++....... ..++.+..+|....+ +..+
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 68999999999988888753 58999999988877764433322 235677778877654 5567
Q ss_pred ccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 278 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+||+|++...+.+ ++.++.++|+|||++++..+.
T Consensus 162 ~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGASASE-------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSBBSS-------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCchHH-------HHHHHHHhcCCCcEEEEEEcc
Confidence 8999998765332 457889999999999997543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-09 Score=118.71 Aligned_cols=115 Identities=7% Similarity=-0.011 Sum_probs=78.2
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchh--hh----HHHHHhC--
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQN--QI----QFALERG-- 259 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a--~~----~~a~~rg-- 259 (617)
......+.+.+.. .. +.+|||||||+|.++..++.. .|+|+|+++.++..| +. +.+...+
T Consensus 228 p~~v~~ml~~l~l------~~--g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~ 299 (433)
T 1u2z_A 228 PNFLSDVYQQCQL------KK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 299 (433)
T ss_dssp HHHHHHHHHHTTC------CT--TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHhcCC------CC--CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC
Confidence 3444555555544 33 368999999999999988874 489999999877766 22 2223334
Q ss_pred -CCccccccccccc--CC--CCCccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 260 -IPAYLGVLGTKRL--PY--PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 260 -~~~~~~~~d~~~l--pf--~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.++.+..+|.... ++ ..++||+|+++..+ +..+...+|.++.++|||||.+++..
T Consensus 300 ~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 300 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCceEEEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 2456665543321 22 24789999987654 22444567899999999999999974
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-10 Score=112.59 Aligned_cols=118 Identities=12% Similarity=0.133 Sum_probs=80.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cc----cchhhhhhhccc--CC-cchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LI----GSIHNWCEAYST--YP-RTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~----~~~~~~~e~~~~--~p-~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++++-. .+|+.+|. +.+++.+.++- +- ..+...+.++.. .+ ++||+|.|.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 47999999999999999986410 14666663 57777666551 10 012222222222 22 799999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChhH----------------------HHHHH----Hhhhhccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV----------------------VDFVK----KYLRALNWEA 580 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~----------------------~~~~~----~~~~~~~w~~ 580 (617)
.++.|+... ++..+|.++.|+|||||.+++...... .++++ .++++.++++
T Consensus 110 ~~l~~~~~~--~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 110 EVIEHLDLS--RLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNV 186 (217)
T ss_dssp SCGGGCCHH--HHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHcCCHH--HHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceE
Confidence 999988522 447899999999999998888766532 22344 8888888887
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-09 Score=110.44 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=82.8
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++ ++.+...|+... +++++||+|++..
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~-- 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV-- 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC--
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC--
Confidence 68999999999998888764 48999999887777663 3333344 466777777665 6677899998632
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
.++..++.++.++|+|||++++..+... ...++.+.+++.||..+
T Consensus 190 ----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--------~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 190 ----PDPWNYIDKCWEALKGGGRFATVCPTTN--------QVQETLKKLQELPFIRI 234 (277)
T ss_dssp ----SCGGGTHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHSSEEEE
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCcee
Confidence 2335789999999999999999765431 12455566667788544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-10 Score=110.85 Aligned_cols=95 Identities=24% Similarity=0.379 Sum_probs=68.5
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc-cccchhhhhhhcccCC-cchhhhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG-LIGSIHNWCEAYSTYP-RTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg-l~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~~~ 535 (617)
-.+|||+|||+|.++..| +. .+|+.+|. +.+++.+.++. -+..++.-.+.++ ++ ++||+|.+..++.|+.
T Consensus 37 ~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP-FPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC-SCSSCEEEEEEESCTTTCS-
T ss_pred CCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC-CCCCcEEEEEEcChhhhcC-
Confidence 347999999999999998 33 14556664 56776666652 1111111112233 33 8999999999999876
Q ss_pred cCCCcccchhhccccccCcceEEEecCh
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++..+|.|+.|+|||||.+++.+..
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7889999999999999999998754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-09 Score=109.74 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=71.4
Q ss_pred eEEEeecccccccccccccc--------hhhhhccCCCccchhhhHHHHHhCCCccccccccccc---CCCC-Ccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL---PYPS-RSFELAH 283 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l---pf~~-~sFDlV~ 283 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++ ....++.+.++|.... ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 58999999999998888653 5999999999887775 1234577888888773 5444 4799999
Q ss_pred ccccccccccccceEEEEecc-cccCCceeeecCh
Q 007128 284 CSRCRIDWLQRDGILLLELDR-LLRPGGYFAYSSP 317 (617)
Q Consensus 284 ~s~~l~h~~~~~~~~L~el~R-vLrPGG~lvis~p 317 (617)
+... | .+...+|.++.| +|||||++++.+.
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 7643 2 233568899997 9999999999764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-10 Score=120.99 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=84.2
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec---------c-c----ccchhhhhhhcc-----c
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR---------G-L----IGSIHNWCEAYS-----T 516 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r---------g-l----~~~~~~~~e~~~-----~ 516 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ | + +-.++.-.+.+. .
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46999999999999999874 44 4666664 5777777765 4 1 111111112221 2
Q ss_pred CC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-----------------------HHHHHHHh
Q 007128 517 YP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------------VVDFVKKY 572 (617)
Q Consensus 517 ~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------------~~~~~~~~ 572 (617)
++ ++||+|+++.++.|+. ++..+|.|+.|+|||||++++.+... ..+++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST----NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCC----CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 44 8999999999999876 78899999999999999999986432 23778999
Q ss_pred hhhcccccc
Q 007128 573 LRALNWEAV 581 (617)
Q Consensus 573 ~~~~~w~~~ 581 (617)
+.+.+|+.+
T Consensus 238 l~~aGF~~v 246 (383)
T 4fsd_A 238 VAEAGFRDV 246 (383)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 999999865
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.71 E-value=7.9e-10 Score=110.73 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh-------CC-Ccccccccccc-cC--CCCCcc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-------GI-PAYLGVLGTKR-LP--YPSRSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-------g~-~~~~~~~d~~~-lp--f~~~sF 279 (617)
..+|||||||+|.++..++.. .|+|+|+++.++..++.+....+ ++ ++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 368999999999999988864 49999999988877764433321 33 57788888775 66 778899
Q ss_pred ccccccccccccccc--------cceEEEEecccccCCceeeecC
Q 007128 280 ELAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 280 DlV~~s~~l~h~~~~--------~~~~L~el~RvLrPGG~lvis~ 316 (617)
|.|+.... -.|... ...++.++.++|+|||+|++.+
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 99974321 111100 0258889999999999999953
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-09 Score=102.76 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=79.4
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cccc--chh-hhhhhcccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIG--SIH-NWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~--~~~-~~~e~~~~~p~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ |+-. .++ +..+.++..+++||+|.+...
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQT---TAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSE---EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCC---eEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 46999999999999999887 44 5667774 5677776654 3310 222 333445544489999998877
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~ 580 (617)
+.+ ..++.++.|+|||||.+++.+.. .....+..+++..+++.
T Consensus 104 ~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 104 LTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147 (178)
T ss_dssp TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred ccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence 763 57999999999999999998763 45566777787777665
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-10 Score=116.14 Aligned_cols=117 Identities=9% Similarity=-0.043 Sum_probs=83.4
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CC-cchhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YP-RTYDLLHAW 527 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p-~tfDlvh~~ 527 (617)
..-.+|||+|||+|.++..|+++ +. .|+.+|. +.+++.|.++ |+-..+...+.++.. ++ ++||+|++.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNN 192 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEEC
Confidence 34457999999999999999987 65 4566664 5777666654 332112222222222 34 899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChh-----------------------HHHHHHHhhhhcccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------------~~~~~~~~~~~~~w~~~ 581 (617)
.++.|+ ++..+|.|+.|+|||||++++.+... ..+++.+++++.+++.+
T Consensus 193 ~~l~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~ 264 (312)
T 3vc1_A 193 ESTMYV-----DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPH 264 (312)
T ss_dssp SCGGGS-----CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEE
T ss_pred CchhhC-----CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEE
Confidence 999976 38899999999999999999877321 23567788888888764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-10 Score=108.97 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=68.7
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC---CCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP---YPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp---f~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+... .++.+..+|+.... ...++||+|++..
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 368999999999999988754 5899999987776655 333332 45677777776532 1235899999654
Q ss_pred cccccccccceEEEEecccccCCceeeec
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
. .......++.++.++|||||++++.
T Consensus 152 ~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 152 A---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 1111123589999999999999997
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.71 E-value=9.3e-10 Score=110.26 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=70.3
Q ss_pred eeEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHh--CC--C-----------------------
Q 007128 215 LRTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALER--GI--P----------------------- 261 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~r--g~--~----------------------- 261 (617)
..+|||+|||+|.++..++.. .|+|+|+++.++..++....... ++ .
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 478999999999998888754 58999999988877764332210 11 1
Q ss_pred --cc-------------cccccccccCC-----CCCcccccccccccccccc--------ccceEEEEecccccCCceee
Q 007128 262 --AY-------------LGVLGTKRLPY-----PSRSFELAHCSRCRIDWLQ--------RDGILLLELDRLLRPGGYFA 313 (617)
Q Consensus 262 --~~-------------~~~~d~~~lpf-----~~~sFDlV~~s~~l~h~~~--------~~~~~L~el~RvLrPGG~lv 313 (617)
+. +..+|+..... ..++||+|+|+..+++... ....++.++.++|+|||+++
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 211 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 211 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence 34 66677655321 3458999998765333221 11368899999999999999
Q ss_pred ec
Q 007128 314 YS 315 (617)
Q Consensus 314 is 315 (617)
++
T Consensus 212 ~~ 213 (250)
T 1o9g_A 212 VT 213 (250)
T ss_dssp EE
T ss_pred Ee
Confidence 95
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-09 Score=113.16 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=73.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCccccccccccc--CCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKRL--PYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~l--pf~~~sFDlV~~ 284 (617)
..+|||||||+|.++..|+++ .|+++|+++.++..++..+... ...++.+..+|+... .+++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 468999999999999998865 5899999998887777443321 123577777886653 234678999997
Q ss_pred cccccccc--cc--cceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDWL--QR--DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~~--~~--~~~~L~el~RvLrPGG~lvis~ 316 (617)
... .++. .. ...+++++.++|+|||++++..
T Consensus 201 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 201 DSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 533 2221 11 2468899999999999999964
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-09 Score=108.34 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--c
Q 007128 434 KDTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--I 504 (617)
Q Consensus 434 ~D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~ 504 (617)
...+.|..++..-...+.. +....-.+|||+|||+|.++..|+.. +. .|+.+|. +.+++++.++ |+ +
T Consensus 57 ~~~~~~~~~~~ds~~~l~~-~~~~~~~~vLDiG~G~G~~~i~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~l~~v 132 (249)
T 3g89_A 57 GEEEVVVKHFLDSLTLLRL-PLWQGPLRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFVERAIEVLGLKGA 132 (249)
T ss_dssp CHHHHHHHHHHHHHGGGGS-SCCCSSCEEEEETCTTTTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHhhceeeechhhhcc-cccCCCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCce
Confidence 3456676655443333322 21223346999999999999888764 44 4566663 5666666554 43 3
Q ss_pred cchhhhhhhccc---CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC---hhHHHHHHHhhhhccc
Q 007128 505 GSIHNWCEAYST---YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK---QSVVDFVKKYLRALNW 578 (617)
Q Consensus 505 ~~~~~~~e~~~~---~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~---~~~~~~~~~~~~~~~w 578 (617)
-.++.-.+.++. ++.+||+|.|..+ .++..++.++.|+|||||.+++-.. .+.+.+++..++.++|
T Consensus 133 ~~~~~d~~~~~~~~~~~~~fD~I~s~a~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~ 204 (249)
T 3g89_A 133 RALWGRAEVLAREAGHREAYARAVARAV--------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGG 204 (249)
T ss_dssp EEEECCHHHHTTSTTTTTCEEEEEEESS--------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTE
T ss_pred EEEECcHHHhhcccccCCCceEEEECCc--------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCC
Confidence 333433344432 3489999998543 2567899999999999999988664 3455567777888888
Q ss_pred ccccccccCCCCCCCCCCeEEEEEEecccccCCC
Q 007128 579 EAVATTADASSDSDKDGDEVVFIVQKKIWLTSES 612 (617)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~K~~w~~~~~ 612 (617)
+.. ++.+- .-++......+++.+|.-.++...
T Consensus 205 ~~~-~~~~~-~~p~~~~~R~l~~~~k~~~t~~~y 236 (249)
T 3g89_A 205 RLG-EVLAL-QLPLSGEARHLVVLEKTAPTPPAY 236 (249)
T ss_dssp EEE-EEEEE-ECTTTCCEEEEEEEEECSCCCTTC
T ss_pred eEE-EEEEe-eCCCCCCcEEEEEEEeCCCCCCCC
Confidence 874 44321 122223455677778866555443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-10 Score=117.08 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=67.6
Q ss_pred chhhHHHhhhcchhhHhhhc---CCceEEEEeecCCC-CCceEEEeec-----ccccchhhhh---hhcccCC------c
Q 007128 458 SLRNLMDMKAHLGSFAAALK---EKDVWVMSVVPEDG-PNTLKLIYDR-----GLIGSIHNWC---EAYSTYP------R 519 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~---~~~~~v~~v~~~~~-~~~l~~~~~r-----gl~~~~~~~~---e~~~~~p------~ 519 (617)
.-.+|||+|||+|.++..|+ ..+. +|+.+|. +.+++.|.++ |....++..+ +.++.-+ +
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 34579999999999999999 5555 5666664 5777776655 2211222111 2222112 6
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEE
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
+||+|+|..+++|+ ++..+|.++.|+|||||.+++
T Consensus 113 ~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence 99999999999966 788999999999999999998
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-09 Score=115.81 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=71.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..++++ .++++|+ +.++..++. . .++.+..+|+.. ++++ ||+|++..+++||
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----S-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNW 259 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----B-TTEEEEECCTTT-CCCC--CSEEEEESCGGGS
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----C-CCcEEEeccccC-CCCC--ccEEEeehhhccC
Confidence 68999999999999998864 4888888 766655542 1 236777788765 6663 9999999997777
Q ss_pred ccccc--eEEEEecccccC---CceeeecCh
Q 007128 292 LQRDG--ILLLELDRLLRP---GGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~--~~L~el~RvLrP---GG~lvis~p 317 (617)
.+. . .+|+++.++||| ||++++..+
T Consensus 260 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 260 TDK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 544 4 799999999999 999998754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.9e-10 Score=111.84 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=66.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----ccc-hhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-----IGS-IHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~-~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||||||+|.++.+|++... -+|+.+|. +.+++.|.++.- +-. ..+|.+-...++ .+||.|..+.+..
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 3699999999999999998754 25666664 678877766532 111 123333333454 8888886433322
Q ss_pred hh-hhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DI-EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~-~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. ..+.-+.+.++.|+.|+|||||.|++.+.
T Consensus 140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~ 171 (236)
T 3orh_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhcchhhhhhhhhheeCCCCEEEEEec
Confidence 11 01222678899999999999999998763
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-09 Score=108.45 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=76.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ ++.+..+|+..++. .++||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc--
Confidence 68999999999999999875 59999999988887774 4444554 56788888887744 5789999876432
Q ss_pred cccccceEEEEecccccCCceeeecChhh
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
....++.++.++|+|||+++++....
T Consensus 197 ---~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ---KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33568889999999999999986554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-09 Score=107.82 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=72.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC---ccccccccccc-C-CCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRL-P-YPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~l-p-f~~~sFDlV~~s 285 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++. ...+.++. +.+..+|+..+ + +++++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 48999999999998888763 58999999988887774 34444443 67777776553 2 346899999875
Q ss_pred ccccccccccceEEEEecccccCCceeeecChh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. ......++.++.++|||||++++....
T Consensus 137 ~~----~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 137 VS----PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp CC----TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred Cc----HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 43 122235788999999999999996543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-10 Score=111.75 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=73.1
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH---hCCC--ccccccccccc-------CCCCCc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE---RGIP--AYLGVLGTKRL-------PYPSRS 278 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~---rg~~--~~~~~~d~~~l-------pf~~~s 278 (617)
..+|||+|||+|.++..|+.+ .|+++|+++.++..++.. +.. .++. +.+..+|+..+ ++++++
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n-~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRS-LELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHH-TTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 468999999999999888765 589999998877776633 333 3333 66777887766 366789
Q ss_pred ccccccccccccc-----------------ccccceEEEEecccccCCceeeecChh
Q 007128 279 FELAHCSRCRIDW-----------------LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 279 FDlV~~s~~l~h~-----------------~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
||+|+|+...... ......+++++.++|||||+|++..+.
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 9999987322111 011234688889999999999986443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-10 Score=117.27 Aligned_cols=101 Identities=9% Similarity=0.056 Sum_probs=70.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----------------ccchhhhh--hhcc-cCC-
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----------------IGSIHNWC--EAYS-TYP- 518 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----------------~~~~~~~~--e~~~-~~p- 518 (617)
.+|||+|||+|+....++..+.. +|+.+|. +.|++.|.+|.- .+.++.-+ +.++ .+|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 46999999999877666555432 5777774 689888887631 11111111 3332 234
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++||+|.|..+++++... .+...+|.|+.|+|||||+|++..+.
T Consensus 128 ~~FD~V~~~~~lhy~~~~-~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHP-RHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCST-TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCH-HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 899999998888765322 25679999999999999999998764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-10 Score=105.54 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc----ccch-hhhhhhcccCCcchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL----IGSI-HNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl----~~~~-~~~~e~~~~~p~tfDlvh~~~ 528 (617)
-.+|||+|||+|.++..+++.+. +|+.+|. +.+++.+.++ |+ +-.+ .++.+.++ +++||+|.++.
T Consensus 53 ~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~ 127 (194)
T 1dus_A 53 DDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNP 127 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECC
Confidence 34799999999999999998855 5666663 5666655554 22 1111 12222222 37999999987
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.+.+.. -+...++.++.|+|||||.+++..... ...++.+.++.. +..+ ++.. . ...-.++.++|
T Consensus 128 ~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~--~----~~~~~~~~~~k 193 (194)
T 1dus_A 128 PIRAGK---EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNV-ETVT--I----KGGYRVLKSKK 193 (194)
T ss_dssp CSTTCH---HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCC-EEEE--E----ETTEEEEEEEC
T ss_pred Ccccch---hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcce-EEEe--c----CCcEEEEEEee
Confidence 776411 145689999999999999999988765 344466666666 4333 3332 1 23456666665
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-10 Score=117.28 Aligned_cols=87 Identities=14% Similarity=0.279 Sum_probs=53.6
Q ss_pred Ccchhhhhhhhhhhhhh--hcCCCcccchhhccccccCcceEEEecChh------------H----------HHHHHHhh
Q 007128 518 PRTYDLLHAWTVFSDIE--KRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------V----------VDFVKKYL 573 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~--~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------~----------~~~~~~~~ 573 (617)
+++||+|.|..++.|++ ....++..++.++.|+|||||+|+|....- . -+++..++
T Consensus 175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L 254 (292)
T 3g07_A 175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYL 254 (292)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHH
T ss_pred CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHH
Confidence 38999999999987653 122356789999999999999999964321 0 12466777
Q ss_pred hh--cccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 574 RA--LNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 574 ~~--~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+ .+++.+ ++++........=+..+++++|+
T Consensus 255 ~~~~~GF~~~-~~~~~~~~~~~g~~r~i~~~~k~ 287 (292)
T 3g07_A 255 TSPDVGFSSY-ELVATPHNTSKGFQRPVYLFHKA 287 (292)
T ss_dssp TSTTTCCCEE-EEC-----------CCCEEEECC
T ss_pred HhcCCCceEE-EEeccCCCCCCCccceEEEEEcC
Confidence 77 888665 33331001111223446666664
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-10 Score=109.40 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=83.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchh-hhhhhcccCC-cchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIH-NWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~-~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++.+.. +|+.+|. +.+++.+.++.- +-.+. +. +.++ ++ ++||+|.+..+|.+
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~-~~~~-~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDV-RKLD-FPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCT-TSCC-SCSSCEEEEEEESHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcch-hcCC-CCCCcccEEEECcchhh
Confidence 46999999999999999987642 4556663 566665555421 11111 21 1222 33 89999999888876
Q ss_pred hh-----------hcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhh--cccccccccccCCCCCCCCCCeEE
Q 007128 533 IE-----------KRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRA--LNWEAVATTADASSDSDKDGDEVV 599 (617)
Q Consensus 533 ~~-----------~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~ 599 (617)
+. .+..+...+|.|+.|+|||||.+++.+..... ..+.++.. ..|+. .... .+. ....++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~--~~~~--~~~--~~~~~~ 192 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSL--RHAT--YGS--GFHFHL 192 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEE--EEEE--ESG--GGCEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEE--EEEE--ecC--cceEEE
Confidence 53 11224578999999999999999999875422 23344433 35665 2221 111 234556
Q ss_pred EEEEe
Q 007128 600 FIVQK 604 (617)
Q Consensus 600 l~~~K 604 (617)
.+++|
T Consensus 193 ~~~~~ 197 (215)
T 2pxx_A 193 YLMHK 197 (215)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77766
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.68 E-value=8e-10 Score=109.78 Aligned_cols=96 Identities=8% Similarity=0.092 Sum_probs=72.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cC-CCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LP-YPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lp-f~~~sFDlV~~s~~ 287 (617)
.+|||||||+|.++..|+.. .|+++|+++.++..++. ...+.++ ++.+..+|+.. ++ ..+++||+|++...
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ-NLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 58999999999999888872 58999999988887774 3444454 47788888755 34 34689999996532
Q ss_pred ccccccccceEEEEecccccCCceeeecC
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
......++.++.++|||||++++..
T Consensus 152 ----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 152 ----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2223458899999999999999953
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-09 Score=112.11 Aligned_cols=127 Identities=13% Similarity=0.025 Sum_probs=78.0
Q ss_pred eEEEeecccccccccccccc---hhhhhcc-CCCccchhhhHHH----HHhCC------Cccccccccc----ccCC--C
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSL-APNDVHQNQIQFA----LERGI------PAYLGVLGTK----RLPY--P 275 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDi-s~~dl~~a~~~~a----~~rg~------~~~~~~~d~~----~lpf--~ 275 (617)
.+|||||||+|.++..++.. .|+++|+ ++.++..++.+.. ...++ ++.+...+.. .+.. +
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG 160 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS
T ss_pred CeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc
Confidence 58999999999998887764 5899999 7888877764331 22222 2334322221 1210 3
Q ss_pred CCccccccccccccccccccceEEEEeccccc---C--CceeeecChhhhcCCHHHHHHHHHHHHHHHHhh-hhhhh
Q 007128 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLR---P--GGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC-WRIAA 346 (617)
Q Consensus 276 ~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLr---P--GG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g-f~~v~ 346 (617)
+++||+|+++.++++ ..+...++.++.++|+ | ||.+++........... ....+.+.+++.| |++..
T Consensus 161 ~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~---~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 161 LQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAE---RDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp CSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEEE
T ss_pred CCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccch---hHHHHHHHHHhcCCEEEEE
Confidence 578999999888554 4444679999999999 9 99876642221111000 0134455677788 86543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-09 Score=110.14 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=72.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Ccccccccccc-cCCC--CCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKR-LPYP--SRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~-lpf~--~~sFDlV~~s 285 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++. .+.+.++ ++.+..+|+.. ++.. .++||+|++.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE-NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 68999999999998888764 58999999988877774 3344444 36777788755 4433 3489999975
Q ss_pred ccccccccccceEEEEecccccCCceeeecChh
Q 007128 286 RCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 286 ~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. ......++.++.++|||||++++....
T Consensus 144 ~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 144 AD----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SC----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred Cc----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 32 222245889999999999999986543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-09 Score=114.49 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=92.9
Q ss_pred cCccc-hhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccch----hhhhhhcccCCcchh
Q 007128 454 IQSNS-LRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSI----HNWCEAYSTYPRTYD 522 (617)
Q Consensus 454 i~~~~-~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~----~~~~e~~~~~p~tfD 522 (617)
+.... ..+|||+|||+|.++..|+++ +.. ++.+|.+.+++.+.++ |+-..+ +|..+.-+..|..||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLT---GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCe---EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 34444 678999999999999999875 443 3344445565555443 331111 122222111457899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------HHHHHHHhhhh
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------------------VVDFVKKYLRA 575 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------------------~~~~~~~~~~~ 575 (617)
+|++..+++|+... +...+|.++.|+|||||+++|.|..- ..+++++++++
T Consensus 251 ~v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 251 VVMLNDCLHYFDAR--EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp EEEEESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred EEEEecccccCCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 99999999977532 24789999999999999999976310 14468888999
Q ss_pred cccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 576 LNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 576 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+++.+ +.. .+...+++++|+
T Consensus 329 aGf~~~-~~~--------~g~~~l~~a~kp 349 (352)
T 3mcz_A 329 AGLAVG-ERS--------IGRYTLLIGQRS 349 (352)
T ss_dssp TTCEEE-EEE--------ETTEEEEEEECC
T ss_pred CCCcee-eec--------cCceEEEEEecC
Confidence 999885 221 235789999985
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-09 Score=102.96 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=65.0
Q ss_pred eEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----------------
Q 007128 216 RTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP---------------- 273 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp---------------- 273 (617)
.+|||+|||+|.++..++++ .|+|+|+++... ..++.+.++|+...+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTSSCCC-----------C
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchhhhhhccccccccccch
Confidence 68999999999999888753 489999998321 113456666766665
Q ss_pred ---------CCCCccccccccccccccc----ccc-------ceEEEEecccccCCceeeecCh
Q 007128 274 ---------YPSRSFELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 274 ---------f~~~sFDlV~~s~~l~h~~----~~~-------~~~L~el~RvLrPGG~lvis~p 317 (617)
+++++||+|+|..+ .|+. .+. ..++.++.++|||||.|++..+
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56679999998765 3332 111 1378889999999999998643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-09 Score=110.00 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=83.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++++.. .|+.+|. +.+++.|.++ |+ +-.++ |..+....++ ++||+|.++-.
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 46999999999999999988543 6778885 5666666554 32 22222 2222222243 89999998644
Q ss_pred hhhh----------------hhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 530 FSDI----------------EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 530 ~~~~----------------~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
|... +...+++..++.++.|+|||||.+++..+.....++...+...+|...
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 4221 011234568999999999999999999888888889999988888763
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-09 Score=118.80 Aligned_cols=98 Identities=12% Similarity=0.208 Sum_probs=73.9
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..+++. .|+++|+++ ++..++ +.+...++ ++.+..+|...++++ ++||+|+|.....+
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 236 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred CEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence 68999999999999888764 589999988 776555 44444554 477888888887766 58999998765444
Q ss_pred cccc-cceEEEEecccccCCceeeecC
Q 007128 291 WLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
+... ....+.++.++|+|||++++..
T Consensus 237 ~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 237 LFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred cCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4322 2346668899999999999753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-09 Score=111.84 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=71.3
Q ss_pred eeEEEeeccccc--cccccccc-----chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----CC--CCccc-
Q 007128 215 LRTVLDVGCGVA--SFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----YP--SRSFE- 280 (617)
Q Consensus 215 ~~~VLDVGCG~G--~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----f~--~~sFD- 280 (617)
.++|||||||++ ..+..+++ ..|+++|.|+.|+..++.........++.+.++|+.+++ .+ .++||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 468999999973 33444332 369999999999988875443221124778888887752 11 35566
Q ss_pred ----ccccccccccccccc---ceEEEEecccccCCceeeecChh
Q 007128 281 ----LAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 281 ----lV~~s~~l~h~~~~~---~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.|+++. ++||..+. ..+++++.++|+|||+|+++...
T Consensus 159 ~~p~av~~~a-vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 159 TRPVALTVIA-IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp TSCCEEEEES-CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred CCcchHHhhh-hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 355554 47777663 35999999999999999998544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-10 Score=126.26 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=76.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC-CCccccccccccc--CCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG-IPAYLGVLGTKRL--PYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg-~~~~~~~~d~~~l--pf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||.|.++..|++. .|+|+|+++.++..|+ ..|.+.+ +++.|.+++++++ ++.+++||+|+|..+++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 358999999999999999987 5999999999999887 4555555 6889999999887 56778999999999876
Q ss_pred ccccccce--EEEEecccccCCceeee
Q 007128 290 DWLQRDGI--LLLELDRLLRPGGYFAY 314 (617)
Q Consensus 290 h~~~~~~~--~L~el~RvLrPGG~lvi 314 (617)
|..++ .. .+..+.+.|+++|..++
T Consensus 146 hv~~~-~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 146 HIVHL-HGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHSSEEE
T ss_pred cCCCH-HHHHHHHHHHHHhccccceee
Confidence 65443 22 23346666888876554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-09 Score=112.40 Aligned_cols=102 Identities=20% Similarity=0.059 Sum_probs=78.5
Q ss_pred eEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++. ..++|+|+++.++..++. .+...++ .+.+.++|+..++.+.+.||+|+++...-
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~-n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-AALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG 283 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH-HHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH-HHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence 6899999999999888876 358999999998888874 4555555 57888999999988778899999863311
Q ss_pred c-------cccccceEEEEecccccCCceeeecChh
Q 007128 290 D-------WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 290 h-------~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
. +......++.++.++|+|||.+++.++.
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1 1111145888999999999999997653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-09 Score=100.79 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=75.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc---ccchhhhh--hhcc-cCC----cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL---IGSIHNWC--EAYS-TYP----RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~~~--e~~~-~~p----~tfDlvh~~~~ 529 (617)
.+|||+|||+|+++..|++++.. |+.+|...+.. ..++ .+++.+.. +.+. .++ ++||+|.++..
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~---V~gvD~~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~ 100 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARK---IISIDLQEMEE---IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAM 100 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSE---EEEEESSCCCC---CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred CEEEEEeecCCHHHHHHHHcCCc---EEEEecccccc---CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence 46999999999999999998664 44444322111 0121 12222210 0000 011 48999987532
Q ss_pred --------hhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 530 --------FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 530 --------~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
+.+.. .....+.+|.++.|+|||||.|++..... ....+...++. .++.+ ++..++. .-+...|.++
T Consensus 101 ~~~~g~~~~d~~~-~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v-~~~kP~a-sR~~s~E~y~ 176 (191)
T 3dou_A 101 AKVSGIPSRDHAV-SYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSY-KISKPPA-SRGSSSEIYI 176 (191)
T ss_dssp CCCCSCHHHHHHH-HHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEE-EEECC-------CCEEEE
T ss_pred cCCCCCcccCHHH-HHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEE-EEECCCC-ccCCCceEEE
Confidence 12111 00123578999999999999999766432 23345555544 35555 3332222 2336789999
Q ss_pred EEEec
Q 007128 601 IVQKK 605 (617)
Q Consensus 601 ~~~K~ 605 (617)
+|++.
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-09 Score=108.83 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=72.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CCC-----CCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PYP-----SRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf~-----~~sFDlV 282 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++. .....++ ++.+..+|+... +.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP-YWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH-HHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 58999999999998888762 59999999999988884 4444454 477777787553 221 4789999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++... ......++.++.++|||||++++..
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 87543 2233457889999999999999854
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-09 Score=115.62 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=86.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++..|. |..+..++...+.....++.+..+|+...|.+ .+|+|++.+++++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHD 256 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGG
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeeccc
Confidence 468999999999999999876 2445554 33444443222211223577888888766655 4799999999888
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhhc--CCHHHHHH---------------HHHHHHHHHHhhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAYA--QDEEDLRI---------------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~--~~~~~~~~---------------w~~l~~l~~~~gf~~v~ 346 (617)
|.++. ..+|++++++|+|||.++|....... ..+..... .+++.++++++||+.+.
T Consensus 257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 257 WADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp SCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 86653 35899999999999999986432211 11111111 16789999999997654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.7e-10 Score=115.66 Aligned_cols=104 Identities=7% Similarity=-0.007 Sum_probs=74.9
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC---cccccccccccCC----CCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKRLPY----PSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~lpf----~~~sFDlV~~s 285 (617)
+.+|||+|||+|.++..++.. .|+++|+++.++..++.+ +...++. +.+.++|+..+.. .+++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n-~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKEN-QVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 358999999999999988865 589999999888887743 4444543 6778888766432 14689999984
Q ss_pred cc---------ccccccccceEEEEecccccCCceeeecChhh
Q 007128 286 RC---------RIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~---------l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
-- +.++..+...++.++.++|+|||++++.....
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 22 11223333468888999999999988765443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-09 Score=105.95 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=78.9
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
..+.+.+.+.. .. +.+|||+|||+|.++..|++. .|+++|+++.++..++.... ...++.+..+|+..
T Consensus 17 ~~~~i~~~~~~------~~--~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 17 VLNQIIKQLNL------KE--TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ 86 (245)
T ss_dssp THHHHHHHCCC------CS--SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT
T ss_pred HHHHHHHhcCC------CC--CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhh
Confidence 44566666654 33 368999999999999999875 59999999998887764332 22357788899999
Q ss_pred cCCCC-Cccccccccc-----------cccccccccceEE----EEecccccCCceeeecC
Q 007128 272 LPYPS-RSFELAHCSR-----------CRIDWLQRDGILL----LELDRLLRPGGYFAYSS 316 (617)
Q Consensus 272 lpf~~-~sFDlV~~s~-----------~l~h~~~~~~~~L----~el~RvLrPGG~lvis~ 316 (617)
+++++ ++| .|+++. .+.| .......+ ..+.|+|+|||.+.+..
T Consensus 87 ~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 87 FQFPNKQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTCCCSSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCcccCCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 88874 689 555541 1122 12334566 55999999999988864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-09 Score=106.07 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=70.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CCCCCcccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PYPSRSFELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf~~~sFDlV~~s~~ 287 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++... ...++ .+.+..+|.... +..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML-HDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 58999999999998888754 5899999998887776433 33343 366777776543 55556 999987632
Q ss_pred ccccccccceEEEEecccccCCceeeecC
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
..+...+++++.++|||||++++..
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2233468999999999999999854
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-09 Score=109.48 Aligned_cols=138 Identities=10% Similarity=0.082 Sum_probs=88.4
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceE--EEeecccccchhhhhhhc-ccCCcchhhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLK--LIYDRGLIGSIHNWCEAY-STYPRTYDLLHAWT 528 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~--~~~~rgl~~~~~~~~e~~-~~~p~tfDlvh~~~ 528 (617)
+......+|||+|||+|.++..|+++ ++. ++.+|.+.++. .+.+.|+-..+.....++ ...| +||+|.+..
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~~~~ 255 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQ---GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVP-HADVHVLKR 255 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEE---EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSEEEEES
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCE---EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCC-CCcEEEEeh
Confidence 34456678999999999999999874 443 33333322222 112224322122111222 3456 999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh-------------------------HHHHHHHhhhhcccccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------------------VVDFVKKYLRALNWEAVAT 583 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------------------~~~~~~~~~~~~~w~~~~~ 583 (617)
+++|.... +...+|.++.|+|||||+|+|.|... ..+++++++++.+|+.+ +
T Consensus 256 vlh~~~d~--~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~-~ 332 (348)
T 3lst_A 256 ILHNWGDE--DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLD-R 332 (348)
T ss_dssp CGGGSCHH--HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEE-E
T ss_pred hccCCCHH--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceE-E
Confidence 99976522 22589999999999999999977421 24578899999999986 4
Q ss_pred cccCCCCCCCCCCeEEEEEEe
Q 007128 584 TADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~K 604 (617)
+.. . .....++-++|
T Consensus 333 ~~~--~----~~~~~vie~~p 347 (348)
T 3lst_A 333 VVG--T----SSVMSIAVGVP 347 (348)
T ss_dssp EEE--C----SSSCEEEEEEE
T ss_pred EEE--C----CCCcEEEEEEe
Confidence 443 1 23445666654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-10 Score=109.44 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=66.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----ccchh-hhhhhcccCC-cchhhhhh-hhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-----IGSIH-NWCEAYSTYP-RTYDLLHA-WTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~~~-~~~e~~~~~p-~tfDlvh~-~~~~ 530 (617)
.+|||+|||+|.++..|++.+.. +|+.+|. +.|++.|.++.- +-.++ ++.+....++ ++||+|++ ...+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence 36999999999999999886552 6777774 688777766531 11222 2222112344 89999988 2222
Q ss_pred hhhhh-cCCCcccchhhccccccCcceEEEecChh
Q 007128 531 SDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 531 ~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+... +.-+.+.++.|+.|+|||||++++.+...
T Consensus 140 -~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 173 (236)
T 1zx0_A 140 -SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 173 (236)
T ss_dssp -BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred -chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCc
Confidence 1110 11133467999999999999999887543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.5e-10 Score=108.22 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=67.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-c-cchhhhhhhccc--CC-cchhhhhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-I-GSIHNWCEAYST--YP-RTYDLLHAWTVFS-- 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~-~~~~~~~e~~~~--~p-~tfDlvh~~~~~~-- 531 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- . ..+.-.+.++.. ++ ++||+|.+..++.
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 4799999999999999998866 5666664 567666655420 0 111111122211 33 7999999988844
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+.. +...+|.++.|+|||||.+++.++.
T Consensus 117 ~~~----~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 117 EPL----ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CHH----HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHH----HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 333 5678999999999999999998775
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-09 Score=110.02 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=91.4
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----cc---cc-chhhhhhhcccCCcchhhh
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GL---IG-SIHNWCEAYSTYPRTYDLL 524 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl---~~-~~~~~~e~~~~~p~tfDlv 524 (617)
.... .+|||+|||+|.++..|+++ +. .++.+|.+.+++.+.++ |+ +- ..+|..+ .+|..||+|
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 237 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIY 237 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEE
Confidence 3444 78999999999999999865 34 34444445666666543 22 11 1122222 356889999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-------------------------HHHHHHHhhhhcccc
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------------------VVDFVKKYLRALNWE 579 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------------------~~~~~~~~~~~~~w~ 579 (617)
.+..+++|.... +...+|.++.|+|||||+++|.|..- ..+++++++++.+++
T Consensus 238 ~~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 238 LLSRIIGDLDEA--ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp EEESCGGGCCHH--HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EEchhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence 999999876422 23589999999999999999986421 245678888899998
Q ss_pred cccccccCCCCCCCCCCeEEEEEEe
Q 007128 580 AVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.+ ++.. . .....++.++|
T Consensus 316 ~~-~~~~--~----~~~~~~i~~~~ 333 (334)
T 2ip2_A 316 VE-RIVD--L----PMETRMIVAAR 333 (334)
T ss_dssp EE-EEEE--E----TTTEEEEEEEE
T ss_pred ee-EEEE--C----CCCCEEEEEEe
Confidence 75 4443 1 22467888877
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-09 Score=104.87 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=74.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CC----ceEEEeecc-cccchhhhhhh--cccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PN----TLKLIYDRG-LIGSIHNWCEA--YSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~----~l~~~~~rg-l~~~~~~~~e~--~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..|++... ...|+.+|. +. +++.+..+. +.....|.... +..++++||+|.++.. .
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~-~- 136 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIA-Q- 136 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCC-S-
T ss_pred EEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEecc-C-
Confidence 699999999999999887521 014666664 33 333333221 21111122111 1223589999998621 1
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh----------HH-HHHHHhhhhcccccccccccCCCCCCCCCCeEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VV-DFVKKYLRALNWEAVATTADASSDSDKDGDEVVFI 601 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 601 (617)
+ -+...++.|+.|+|||||.+++.-... +. ++++. +++- ++.+ +..+ .++. ...-.+++
T Consensus 137 ---~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~-f~~~-~~~~--~~p~-~~~h~~~~ 206 (210)
T 1nt2_A 137 ---K-NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGD-FKIV-KHGS--LMPY-HRDHIFIH 206 (210)
T ss_dssp ---T-THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTT-SEEE-EEEE--CTTT-CTTEEEEE
T ss_pred ---h-hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH-HHhh-cEEe-eeec--CCCC-CCCcEEEE
Confidence 1 122345899999999999999973221 11 22333 4444 8876 4444 4342 23456777
Q ss_pred EEe
Q 007128 602 VQK 604 (617)
Q Consensus 602 ~~K 604 (617)
++|
T Consensus 207 ~~~ 209 (210)
T 1nt2_A 207 AYR 209 (210)
T ss_dssp EEE
T ss_pred EEc
Confidence 765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-09 Score=109.30 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++.++++.+. .|+.+|. +.+++.+.++ |+ +-.++ ++.+.++ +.+||+|.++.++.+
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 4799999999999999998876 6667774 6777666654 32 22121 2222222 278999999766653
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
+..++.++.|+|||||++++.+.. ...+++.+.+++.+|+.+ .+.. .+.-..|+++|
T Consensus 197 -------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~-~~~~-------~~~W~~l~~~k 254 (254)
T 2nxc_A 197 -------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL-EEAA-------EGEWVLLAYGR 254 (254)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE-EEEE-------ETTEEEEEEEC
T ss_pred -------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEE-EEec-------cCCeEEEEEEC
Confidence 357899999999999999997643 457788999999999885 3332 23445666665
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-09 Score=112.65 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=93.4
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~ 526 (617)
+......+|||+|||+|.++..|+++ ++. ++.+|.+.+++.+.++ |+-..+.....++ ..+|..||+|.+
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~ 274 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLI 274 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEh
Confidence 34556678999999999999999875 443 3444445555555443 3311121111111 234568999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------------------HHHHHHHhhhhccccccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------VVDFVKKYLRALNWEAVA 582 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------~~~~~~~~~~~~~w~~~~ 582 (617)
..++++.... ....+|.++.|+|||||+++|.|..- ..+++++++++.+|+.+
T Consensus 275 ~~vlh~~~d~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~- 351 (369)
T 3gwz_A 275 KHVLHDWDDD--DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE- 351 (369)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE-
T ss_pred hhhhccCCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE-
Confidence 9999876522 12379999999999999999976421 14578899999999986
Q ss_pred ccccCCCCCCCCCCeEEEEEEec
Q 007128 583 TTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
++.. . ......++.|+|.
T Consensus 352 ~~~~--~---~~~~~svie~~~a 369 (369)
T 3gwz_A 352 RSLP--C---GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEE--C---SSSSEEEEEEEEC
T ss_pred EEEE--C---CCCCcEEEEEEeC
Confidence 4443 1 1345678888763
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-09 Score=97.35 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=78.7
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEeec--ccccchhhhh--hhccc-CC-cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIYDR--GLIGSIHNWC--EAYST-YP-RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~~r--gl~~~~~~~~--e~~~~-~p-~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++. +. .++.+|...+++. .+ -..+...+.. +.++. ++ ++||+|.++..+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKG---RIIACDLLPMDPI--VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTC---EEEEEESSCCCCC--TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCC---eEEEEECcccccc--CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 37999999999999999876 24 3444443114332 11 0122222210 00110 23 899999987766
Q ss_pred hhhhhcCC-------CcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEE
Q 007128 531 SDIEKRGC-------SGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIV 602 (617)
Q Consensus 531 ~~~~~~~c-------~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 602 (617)
++...... ....+|.++.|+|||||.+++..... ...++.+.+.. .|+.+ .+..+ ........+.+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~~~~~ 175 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKV-KVRKP-DSSRARSREVYIVA 175 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEE-EEECC-TTSCTTCCEEEEEE
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhE-EeecC-CcccccCceEEEEE
Confidence 53220000 01578999999999999999976533 33445555544 37665 33322 22223557888888
Q ss_pred Eec
Q 007128 603 QKK 605 (617)
Q Consensus 603 ~K~ 605 (617)
++.
T Consensus 176 ~~~ 178 (180)
T 1ej0_A 176 TGR 178 (180)
T ss_dssp EEE
T ss_pred ccC
Confidence 763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-09 Score=114.57 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=89.5
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhh
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
......+|||+|||+|.++..|+++ +.. ++.+|.+.+++.+.++ |+-..+.....++...| ..+|+|.+.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 263 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELD---STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCe---EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEe
Confidence 3445568999999999999999875 443 3344445666666554 33111221122222222 334999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecCh----------------------------hHHHHHHHhhhhcccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ----------------------------SVVDFVKKYLRALNWE 579 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~----------------------------~~~~~~~~~~~~~~w~ 579 (617)
.+++++... +...+|.++.|+|||||+++|.+.. -..+++++++++.+++
T Consensus 264 ~vlh~~~d~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~ 341 (359)
T 1x19_A 264 RILYSANEQ--LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341 (359)
T ss_dssp SCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCE
T ss_pred chhccCCHH--HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCc
Confidence 999876521 2678999999999999999887721 1234577778888888
Q ss_pred cccccccCCCCCCCCCCeEEEEEEec
Q 007128 580 AVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.+ ++.. . . ...+++++|+
T Consensus 342 ~v-~~~~--~----~-~~~vi~a~kp 359 (359)
T 1x19_A 342 DV-TMVR--K----Y-DHLLVQAVKP 359 (359)
T ss_dssp EE-EEEE--E----T-TEEEEEEECC
T ss_pred eE-EEEe--c----C-CceEEEEeCC
Confidence 75 4443 1 1 4678888874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-09 Score=103.27 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=77.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCC-cchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +..+..-.+.++ ++ ++||+|.+. +.|+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEE--hhcC
Confidence 799999999999999999876 6777774 5777766655 22 111111112222 33 899999984 3333
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-----------------HHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------~~~~~~~~~~~~~w~~~ 581 (617)
. ..+...+|.++.|+|||||.+++.+... ..++++++++ +|+.+
T Consensus 106 ~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 106 P--SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp C--HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEE
Confidence 1 1256789999999999999999986321 4567888888 88875
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-09 Score=112.85 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=69.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..++++ .++++|+ +.++..++. ..++.+..+|+.. +++ +||+|+++.++++|
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP--SADAVLLKWVLHDW 264 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC--CceEEEEcccccCC
Confidence 58999999999999998875 3677787 455554431 1236777788776 666 49999999987766
Q ss_pred ccccc--eEEEEecccccC---CceeeecCh
Q 007128 292 LQRDG--ILLLELDRLLRP---GGYFAYSSP 317 (617)
Q Consensus 292 ~~~~~--~~L~el~RvLrP---GG~lvis~p 317 (617)
.++ . .+|+++.++|+| ||++++..+
T Consensus 265 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 265 NDE-QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp CHH-HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 543 4 799999999999 999998643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-09 Score=102.70 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=73.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++..+++. .|+++|+++.++..++... ...++ ++.+...|.....+++++||+|++..
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~----- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL-KKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV----- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHH-HHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS-----
T ss_pred CEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHH-HHcCCCCcEEEEEcChhhcccCCCcccEEEECC-----
Confidence 68999999999999888764 6889999988777766433 33343 46677777766543667899998632
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.++..++.++.++|+|||++++..+..
T Consensus 167 -~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 167 -REPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp -SCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred -cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 233568999999999999999986543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-09 Score=109.65 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=85.6
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc-cCC-CCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR-LPY-PSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~-lpf-~~~sFDlV~~s~~ 287 (617)
+.+|||+| |+|.++..++.. .|+++|+++.++..++. .+.+.++ ++.+..+|+.. +|. .+++||+|+++..
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK-AANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH-HHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 36899999 999999888754 58999999988888774 4444565 67888889887 764 4578999998754
Q ss_pred ccccccccceEEEEecccccCCcee-eecChhhhcCCHHHHHHHHHHHHHHH-Hhhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYF-AYSSPEAYAQDEEDLRIWKEMSALVE-RMCWRIA 345 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~l-vis~p~~~~~~~~~~~~w~~l~~l~~-~~gf~~v 345 (617)
. +... ...++.++.++|||||.+ +++... .... ...|..+.+.+. ..||...
T Consensus 251 ~-~~~~-~~~~l~~~~~~LkpgG~~~~~~~~~-~~~~---~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 251 E-TLEA-IRAFVGRGIATLKGPRCAGYFGITR-RESS---LDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp S-SHHH-HHHHHHHHHHTBCSTTCEEEEEECT-TTCC---HHHHHHHHHHHHHTSCCEEE
T ss_pred C-chHH-HHHHHHHHHHHcccCCeEEEEEEec-CcCC---HHHHHHHHHHHHHhcCcchh
Confidence 2 2222 256889999999999944 444322 0111 123456667666 6776543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-09 Score=107.48 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=73.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccc-hhhhhhhcccC-Ccchhhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGS-IHNWCEAYSTY-PRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~-~~~~~e~~~~~-p~tfDlvh~~~~~~~~~~ 535 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++.- +.. ..++.+.++.- +++||+|++.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 4699999999999999999876 5666664 677777776622 111 12332333322 3799999985
Q ss_pred cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
-++..+|.++.|+|||||.++........+++.+.+...+++.
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 2678999999999999999994433323345555555555444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-09 Score=98.42 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=78.2
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhc---
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR--- 536 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~--- 536 (617)
+|||+|||+|.++..|++++ +|+.+|. +.|++. ...+--...+..++++. ++||+|.++..|.+....
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhccc--CCCCEEEECCCCccCCccccc
Confidence 69999999999999999987 6777774 566655 22221111222232222 899999998777643211
Q ss_pred --CCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhcccccc
Q 007128 537 --GCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 537 --~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~~ 581 (617)
..+...++.++-+.| |||.+++... ....+++.++++..+|+.+
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~ 144 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTR 144 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEE
Confidence 112356788888888 9999998764 4567789999999999985
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-10 Score=107.61 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=67.2
Q ss_pred hhHHHhhhcchhh-HhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSF-AAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~f-a~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.+ ...++..+. +|+.+|. +.+++.+.++ +. +-.++.-.+.++ ++ ++||+|.+..++.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIF 100 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChHH
Confidence 4799999999998 455566666 5666664 5777666554 21 111111112233 33 8999999999998
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|+. ..++..+|.++.|+|||||.+++.+.
T Consensus 101 ~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 101 HMR--KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GSC--HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCC--HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 872 11678999999999999999999764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-09 Score=114.22 Aligned_cols=142 Identities=16% Similarity=0.152 Sum_probs=91.0
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHAWTV 529 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~~~~ 529 (617)
..-.+|||+|||+|.++..|++. ++. ++.+|.+.+++.+.++ |+...+...+.++ ..+|..||+|.+..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLR---GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCE---EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecc
Confidence 34567999999999999999875 343 3344434566555443 3311122112222 224556999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecC--h--h-----------------------HHHHHHHhhhhccccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK--Q--S-----------------------VVDFVKKYLRALNWEAVA 582 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~--~--~-----------------------~~~~~~~~~~~~~w~~~~ 582 (617)
++|+... +...+|.++.|+|||||+++|.+. . + ..+++++++++.+|+.+
T Consensus 258 l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~- 334 (374)
T 1qzz_A 258 LLNWSDE--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA- 334 (374)
T ss_dssp GGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE-
T ss_pred ccCCCHH--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceE-
Confidence 9876522 224899999999999999999876 2 1 24567888999999886
Q ss_pred ccccCCCCCCC-CCCeEEEEEEecc
Q 007128 583 TTADASSDSDK-DGDEVVFIVQKKI 606 (617)
Q Consensus 583 ~~~~~~~~~~~-~~~~~~l~~~K~~ 606 (617)
++.+ .+... .....++.++|+=
T Consensus 335 ~~~~--~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 335 SERT--SGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEE--ECCSSCSSCEEEEEEEECC
T ss_pred EEEE--CCCCcccCCcEEEEEEECc
Confidence 4443 21100 0122788888853
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.5e-09 Score=108.92 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=68.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh-----------CCCccccccccccc--CCCCC
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER-----------GIPAYLGVLGTKRL--PYPSR 277 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r-----------g~~~~~~~~d~~~l--pf~~~ 277 (617)
.+|||+|||+|.++..|+.. .|+++|+++.++..++....... ..++.+..+|+... +++++
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~ 186 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL 186 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCC
Confidence 68999999999999888764 48999999988877775443311 13567778888776 56677
Q ss_pred ccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 278 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 278 sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+||+|++... .+..++.++.++|+|||++++..+
T Consensus 187 ~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 187 TFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp -EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8999997432 223478999999999999998654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-09 Score=104.50 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=86.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..|+.. .|+++|+++..+..|+. .+...++ .+.+..+|......+++.||+|+.....-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~-N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg 101 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK-NVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG 101 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccccccccCEEEEeCCch
Confidence 68999999999999998875 48999999998888874 4455555 36777888777666655799987554311
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
.. ...+|.+..+.|+++|+|+++... . ...+.+.+.+.||.++..
T Consensus 102 ~l---I~~IL~~~~~~l~~~~~lIlqp~~----~------~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 102 RL---IADILNNDIDKLQHVKTLVLQPNN----R------EDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp HH---HHHHHHHTGGGGTTCCEEEEEESS----C------HHHHHHHHHHTTEEEEEE
T ss_pred HH---HHHHHHHHHHHhCcCCEEEEECCC----C------hHHHHHHHHHCCCEEEEE
Confidence 11 123666778889999999997421 1 256788899999977653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-09 Score=107.72 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=65.9
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCCcchhhhhhh-hhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYPRTYDLLHAW-TVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p~tfDlvh~~-~~~~ 531 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.++.-.+.++ ++++||+|.|. ..+.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFSTIM 117 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cCCCccEEEEcCCchh
Confidence 35799999999999999999877 5667774 5777776654 22 111111111222 34899999864 3344
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++. .-+...+|.++.|+|||||.+++..
T Consensus 118 ~~~--~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 118 YFD--EEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GSC--HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC--HHHHHHHHHHHHHHcCCCeEEEEec
Confidence 332 1156789999999999999999753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-09 Score=107.26 Aligned_cols=134 Identities=15% Similarity=0.242 Sum_probs=90.5
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWT- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~- 528 (617)
.+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.++ |+ +-.++ ++.+.++ +++||+|.++-
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 36999999999999999853 33 5667774 5777666554 32 11122 3333332 37899999862
Q ss_pred ------------hhhhhhh--------cCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCC
Q 007128 529 ------------VFSDIEK--------RGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADAS 588 (617)
Q Consensus 529 ------------~~~~~~~--------~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 588 (617)
+..|-+. .-.++..++.++.|+|||||++++.......++++++++..+|+.+ .+..
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v-~~~~-- 262 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDV-ETCR-- 262 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTC-CEEE--
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEE-EEEe--
Confidence 2211100 0012357889999999999999999888888889999999999875 3332
Q ss_pred CCCCCCCCeEEEEEEe
Q 007128 589 SDSDKDGDEVVFIVQK 604 (617)
Q Consensus 589 ~~~~~~~~~~~l~~~K 604 (617)
+ -.+.+++++++|
T Consensus 263 d---~~g~~r~~~~~~ 275 (276)
T 2b3t_A 263 D---YGDNERVTLGRY 275 (276)
T ss_dssp C---TTSSEEEEEEEC
T ss_pred c---CCCCCcEEEEEE
Confidence 1 156788888875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.1e-09 Score=107.68 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=71.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
..+|||||||+|.++..++++ .|+++|+++.++..++..+..- ...++.+..+|+.. ++..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 368999999999999998865 4899999998887776443321 12356777777654 44556899999975
Q ss_pred ccccccccc----cceEEEEecccccCCceeeecC
Q 007128 286 RCRIDWLQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 286 ~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
.. .++... ...+++++.++|+|||++++..
T Consensus 176 ~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 176 SS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp CC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 43 222211 1347889999999999999864
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-09 Score=104.25 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=86.3
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccC-Ccchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTY-PRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~-p~tfDlvh~~~ 528 (617)
+|||+|||+|.++..|+++ .. .|+.+|. +.+++.|.++ |+ +-.++.-.+.++.+ +++||+|.++.
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENG---RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTC---EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 6999999999999999875 23 5777774 5777766655 22 22222112334323 48999999876
Q ss_pred hh-hhh----hhcCCCcccchhhccccccCcceEEEecCh------hHHHHHHHhhhhcc---cccccccccCCCCCCCC
Q 007128 529 VF-SDI----EKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------SVVDFVKKYLRALN---WEAVATTADASSDSDKD 594 (617)
Q Consensus 529 ~~-~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~ 594 (617)
.+ ++- ....-+...++.++.|+|||||++++.... ...+.+.+++..+. |+.+ ... .-+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~-~~~---~~~~~~ 177 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQ-RTD---FINQAN 177 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEE-EEE---ETTCCS
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEE-EEE---eccCcc
Confidence 55 100 000002246999999999999999988532 14455666666554 7763 221 112234
Q ss_pred CCeEEEEEEecc
Q 007128 595 GDEVVFIVQKKI 606 (617)
Q Consensus 595 ~~~~~l~~~K~~ 606 (617)
.+..+++.+|..
T Consensus 178 ~pp~~~~~~~~~ 189 (197)
T 3eey_A 178 CPPILVCIEKIS 189 (197)
T ss_dssp CCCEEEEEEECC
T ss_pred CCCeEEEEEEcc
Confidence 567888888853
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-09 Score=113.17 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=83.3
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccc---
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHC--- 284 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~--- 284 (617)
.+|||+|||+|..+..|++. .|+++|+++..+..++. .+...++ ++.+..+|...++ +++++||+|++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKD-FVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 68999999999998888762 58999999887776663 3444455 5778888887776 55578999995
Q ss_pred --ccccccccccc----------------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh-hhhh
Q 007128 285 --SRCRIDWLQRD----------------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM-CWRI 344 (617)
Q Consensus 285 --s~~l~h~~~~~----------------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~-gf~~ 344 (617)
....++..++. ..+|.++.++|||||++++++....+...+ +.+..++++. +|+.
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene-----~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENE-----KNIRWFLNVHPEFKL 413 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHCSSCEE
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH-----HHHHHHHHhCCCCEE
Confidence 22222211110 347899999999999999876544332221 3445555554 4543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-09 Score=110.52 Aligned_cols=100 Identities=12% Similarity=0.004 Sum_probs=68.7
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcccccccccc-cCCCCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKR-LPYPSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~ 286 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++..+... ...++.+..+|+.. ++..+++||+|++..
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~ 189 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDS 189 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECC
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcC
Confidence 68999999999999988765 5899999998777766433221 12346677777654 333567899999754
Q ss_pred ccccccccc----ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQRD----GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~~----~~~L~el~RvLrPGG~lvis~ 316 (617)
. .++.... ..+++++.++|+|||++++..
T Consensus 190 ~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 190 S-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp C--------------HHHHHHHHEEEEEEEEEEC
T ss_pred C-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 2 3332211 357788999999999999975
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-09 Score=102.05 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=78.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccch-hhhhhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSI-HNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~-~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++... .|+.+|. +.+++.+.++ |+ +-.+ .++.+.++.. .+||+|.+..++
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~ 110 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSG 110 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHhcC---EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCch
Confidence 4799999999999999998874 5666664 5666655543 22 1111 1222222221 589999987776
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~ 580 (617)
. ++..++.++.|+|+|||.+++.+. .....++.+++...+|+.
T Consensus 111 ~-------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 111 G-------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV 154 (192)
T ss_dssp T-------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred H-------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCce
Confidence 5 457899999999999999999765 456777888888888854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-09 Score=104.00 Aligned_cols=130 Identities=11% Similarity=0.120 Sum_probs=84.2
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC--Ccchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY--PRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~--p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|+.. +. +|+.+|. +.+++.+.++ |+- .++..+.++..+ +.+||+|.++.+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc-
Confidence 36999999999999999864 44 4556663 4666555443 331 122122222222 279999998542
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
.++..++.++.++|||||++++.......++++.+++ +|+.+ .+..-.. +.......+++++|+
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~-~~~~~~~-~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVE-SVVKLQV-PALDGERHLVVIKAN 205 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEE-EEEEEEC-C--CCEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCcee-eeeeecc-CCCCCceEEEEEEec
Confidence 2567899999999999999999987777778888887 77764 3210001 112445677777764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-09 Score=104.67 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=85.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||||||+|.++..|+.. .|+++|+++..+..|+ +.+...++. +.+..+|......++..||+|++....-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg 101 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ-KQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG 101 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence 68999999999999998875 4899999998888887 445555653 6777788776655544699987654311
Q ss_pred ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
.. ...+|.+..+.|+++|+|+++... . ...+.+.+.+.||.++.
T Consensus 102 ~l---I~~IL~~~~~~L~~~~~lIlq~~~----~------~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 102 TL---IRTILEEGAAKLAGVTKLILQPNI----A------AWQLREWSEQNNWLITS 145 (244)
T ss_dssp HH---HHHHHHHTGGGGTTCCEEEEEESS----C------HHHHHHHHHHHTEEEEE
T ss_pred HH---HHHHHHHHHHHhCCCCEEEEEcCC----C------hHHHHHHHHHCCCEEEE
Confidence 11 123677778899999999997421 1 25678889999997654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-09 Score=104.56 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=71.9
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CCC--CCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PYP--SRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf~--~~sFDlV~~s~ 286 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++.. ....++ .+.+..+|.... +.. +++||+|++..
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH-VKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH-HHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 58999999999998888764 589999998877776633 333344 366777776653 433 57899999765
Q ss_pred cccccccccceEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.. .+...++.++.++|+|||++++.+.
T Consensus 135 ~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 135 AK----GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GG----SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CH----HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 42 2335688999999999999999743
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-09 Score=104.15 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=86.2
Q ss_pred hhHHHhhhc-chhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAH-LGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G-~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p-~tfDlvh~~~~ 529 (617)
.+|||+||| +|.++..|++. +. +|+.+|. +.+++.|.++ |+ +-.++ ++ ..+..++ ++||+|.++-.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCC
Confidence 469999999 99999999987 44 5666674 5676666544 32 11121 11 1233344 89999998755
Q ss_pred hhhhhh---------------cCCCcccchhhccccccCcceEEEec--ChhHHHHHHHhhhhcccccccccccCCCCCC
Q 007128 530 FSDIEK---------------RGCSGEDLLLEMDRILRPTGFVIIRD--KQSVVDFVKKYLRALNWEAVATTADASSDSD 592 (617)
Q Consensus 530 ~~~~~~---------------~~c~~~~~l~Em~RiLrPgG~~ii~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 592 (617)
|.+... ....+..++.++.|+|||||++++.. .....+++.+.++..+|+. .... ...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~--~~~~--~~~g 208 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSV--KDIK--FKVG 208 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE--EEEE--ECCC
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCce--EEEE--ecCC
Confidence 542211 00013678999999999999998843 3456778999999999976 3332 1111
Q ss_pred CCCCeEEEEEEe
Q 007128 593 KDGDEVVFIVQK 604 (617)
Q Consensus 593 ~~~~~~~l~~~K 604 (617)
...-.+|..+|
T Consensus 209 -~~~~~~l~f~~ 219 (230)
T 3evz_A 209 -TRWRHSLIFFK 219 (230)
T ss_dssp -C-CEEEEEEEC
T ss_pred -CeEEEEEEEec
Confidence 23455666555
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.2e-10 Score=110.65 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=68.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcc------cCC--cchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYS------TYP--RTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~------~~p--~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.-...+...+.++. .++ ..||+|.+..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 4699999999999999998765 5666664 577766655531111111111111 122 349999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.|+.. .+...+|.++.|+|||||+++|.+..
T Consensus 135 ~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 135 HHIPV--EKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp TTSCG--GGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hcCCH--HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 97742 25679999999999999998888653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.1e-09 Score=110.68 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcccccccccc--c
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRC--R 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~--l 288 (617)
++|||||||+|.++...+++ .|+++|.++ ++..|+ +.++.+++. +.+..++++.+.++ +.||+|+|-.. .
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~-~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAR-EVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHH-HHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 58999999999888776664 499999986 555554 556666653 67778888888877 68999997321 1
Q ss_pred cccccccceEEEEecccccCCceeeec
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+.+......++....|+|+|||.++-+
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccchhhhHHHHHHhhCCCCceECCc
Confidence 122222234667778999999999865
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-09 Score=98.71 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=72.5
Q ss_pred hhHHHhhhcchhhHhhhcCC----ceEEEEeecCCCCCceEEEeeccc---ccchhhhh-------------------hh
Q 007128 460 RNLMDMKAHLGSFAAALKEK----DVWVMSVVPEDGPNTLKLIYDRGL---IGSIHNWC-------------------EA 513 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~----~~~v~~v~~~~~~~~l~~~~~rgl---~~~~~~~~-------------------e~ 513 (617)
.+|||+|||+|+++..|+++ +.. |+.+|...+.. ..++ .+...+.. ..
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~---v~gvD~s~~~~---~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNK---IIGIDKKIMDP---IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEE---EEEEESSCCCC---CTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCce---EEEEeCCccCC---CCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 46999999999999999875 343 44444322211 0111 11221110 00
Q ss_pred cc-cCC-cchhhhhhhhhhhhh----hhcC---CCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccccc
Q 007128 514 YS-TYP-RTYDLLHAWTVFSDI----EKRG---CSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAVAT 583 (617)
Q Consensus 514 ~~-~~p-~tfDlvh~~~~~~~~----~~~~---c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~~~ 583 (617)
+. .++ ++||+|.++..+++. ..+. -....+|.++.|+|||||.+++.... ....++...+.. .|..+ .
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v-~ 175 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLV-H 175 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEE-E
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheE-E
Confidence 00 133 799999987654421 0000 00124889999999999999985433 223445555544 35443 2
Q ss_pred cccCCCCCCCCCCeEEEEEEe
Q 007128 584 TADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~K 604 (617)
+..+ ........|.+++|++
T Consensus 176 ~~~~-~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 176 TTKP-KASRNESREIYLVCKN 195 (201)
T ss_dssp ECCC-C-----CCEEEEEEEE
T ss_pred EECC-cccCCcCceEEEEEec
Confidence 3221 1122356788999987
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-09 Score=104.30 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=70.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-CC---CCcccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-YP---SRSFELAH 283 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-f~---~~sFDlV~ 283 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.. ....++ .+.+..+|+... + ++ .++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN-IERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 58999999999999888764 589999999888777643 333444 367777776442 2 11 25799999
Q ss_pred ccccccccccccceEEEEecccccCCceeeecChh
Q 007128 284 CSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 284 ~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+... ......++.++.++|||||++++....
T Consensus 139 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 7643 122245889999999999999986543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-09 Score=107.75 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=71.7
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCccccccccccc-CCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKRL-PYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~l-pf~~~sFDlV~~s 285 (617)
+.+|||||||+|.++..+++. .|+++|+++.++..++..+... ...++.+..+|+... +..+++||+|++.
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 468999999999999988764 5889999887776665332211 123466777776542 3335789999975
Q ss_pred cccccccccc----ceEEEEecccccCCceeeecChh
Q 007128 286 RCRIDWLQRD----GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 286 ~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.. .++.... ..+++++.++|+|||++++....
T Consensus 159 ~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 159 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp CC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 32 2322211 36889999999999999997543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-09 Score=109.86 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred eeEEEeecccccccccccccc-hhhhhcc----CCCccchhhhHHHHHhC-CCcccccc-cccccCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-DVITMSL----APNDVHQNQIQFALERG-IPAYLGVL-GTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-~V~gvDi----s~~dl~~a~~~~a~~rg-~~~~~~~~-d~~~lpf~~~sFDlV~~s~~ 287 (617)
+.+|||||||+|.++..++++ .|+++|+ ++.++..... ...+ ..+.+..+ |+..+| .++||+|+|..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPM---STYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCC---CSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHh---hhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 379999999999999999876 5899998 4433322111 1111 23556666 666654 468999998654
Q ss_pred cc--ccccccc---eEEEEecccccCCceeeecCh
Q 007128 288 RI--DWLQRDG---ILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 l~--h~~~~~~---~~L~el~RvLrPGG~lvis~p 317 (617)
.. ++..+.. .+|.++.++|||||.|++..+
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 31 2222211 368888999999999998643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.1e-09 Score=107.70 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=70.5
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH--H--hCCCcccccccccc-cCCCCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL--E--RGIPAYLGVLGTKR-LPYPSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~--~--rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~ 286 (617)
.+|||||||+|.++..++++ .|+++|+++.++..++..+.. . ...++.+..+|+.. ++..+++||+|++..
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 171 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 171 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence 68999999999999988865 589999999888777644322 1 12356777777654 344467899999753
Q ss_pred cccccccc-----cceEEEEecccccCCceeeecCh
Q 007128 287 CRIDWLQR-----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 287 ~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p 317 (617)
. .++... ...+++++.++|+|||++++...
T Consensus 172 ~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 172 T-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp -----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred C-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 2 221111 13577899999999999999753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-09 Score=103.99 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=70.7
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--ccccccccccc-CC-CC----Cccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRL-PY-PS----RSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~l-pf-~~----~sFDlV 282 (617)
.+|||||||+|.++..|++. .|+++|+++.++..++.. ....++. +.+..+|+... +. .. ++||+|
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 58999999999999888764 589999999888777743 3344443 67777776432 21 11 789999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecCh
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++... ......++.++.++|||||++++...
T Consensus 145 ~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 145 YIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 85432 23334588999999999999998643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.6e-09 Score=102.15 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=91.4
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccch--hhhhhhcccCCcchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSI--HNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~--~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
-.+|||+|||+|.+|..++...--+ .|..+|. +.|++++.++- +-..+ .+..+. ..|.+||+|.+..+++
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTTSEEEEEEEETCHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCCCCcChhhHhhHHH
Confidence 4479999999999999997662222 6888884 79999888763 21112 122222 2348999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
++. +...++..+.+.|||||.||-.++.+ ..+..+..+..=.|.+ .... .+.|.+.
T Consensus 127 lL~----~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~--~~~~-------~~nEl~y 193 (200)
T 3fzg_A 127 VLK----QQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKIL--DSKV-------IGNELVY 193 (200)
T ss_dssp HHH----HTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEE--EEEE-------ETTEEEE
T ss_pred hhh----hhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceee--eeee-------eCceEEE
Confidence 996 55778889999999999999999443 4445666666556655 2222 3467777
Q ss_pred EEEe
Q 007128 601 IVQK 604 (617)
Q Consensus 601 ~~~K 604 (617)
+.+|
T Consensus 194 ~~~~ 197 (200)
T 3fzg_A 194 ITSG 197 (200)
T ss_dssp EECC
T ss_pred EEec
Confidence 7766
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-09 Score=114.63 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=84.2
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC-CCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP-YPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp-f~~~sFDlV~~---- 284 (617)
+.+|||+|||+|..+..|++. .|+++|+++.++..++ +.+...|+.+.+..+|...++ +.+++||+|++
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~Pc 180 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC 180 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCc
Confidence 368999999999999888753 4899999998887776 444555666777778877765 34678999994
Q ss_pred cc-ccccccccc----------------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh-hhhhh
Q 007128 285 SR-CRIDWLQRD----------------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM-CWRIA 345 (617)
Q Consensus 285 s~-~l~h~~~~~----------------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~-gf~~v 345 (617)
+. ..+...++. ..+|.++.++|||||+|++++-...+...+ +.+..++++. +|+++
T Consensus 181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne-----~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENE-----GVVAHFLKAHPEFRLE 254 (464)
T ss_dssp CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHCTTEEEE
T ss_pred CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCH-----HHHHHHHHHCCCcEEE
Confidence 21 111111111 347888999999999999975444332222 3455566654 45443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-08 Score=102.28 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=74.5
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC--CCccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG--IPAYLGVLG 268 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~~d 268 (617)
...+.+.+.+.. .. ..+|||||||+|.++..|++. .|+++|+++.++..++... ...+ .++.+..+|
T Consensus 15 ~i~~~i~~~~~~------~~--~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D 85 (285)
T 1zq9_A 15 LIINSIIDKAAL------RP--TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGD 85 (285)
T ss_dssp HHHHHHHHHTCC------CT--TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESC
T ss_pred HHHHHHHHhcCC------CC--CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcc
Confidence 445666666654 32 368999999999999999875 5899999998877666333 2222 246788888
Q ss_pred ccccCCCCCcccccccccc----------ccccccccceEE----EEe--cccccCCceeee
Q 007128 269 TKRLPYPSRSFELAHCSRC----------RIDWLQRDGILL----LEL--DRLLRPGGYFAY 314 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~----------l~h~~~~~~~~L----~el--~RvLrPGG~lvi 314 (617)
+..++++ +||+|+++.. ++++......++ +|+ .++|+|||.++.
T Consensus 86 ~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 86 VLKTDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp TTTSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred eecccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 8887776 7999998632 111122223333 233 369999999854
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-08 Score=109.46 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=82.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++..++.. .|+|+|+++.++..++ +.+...++ ++.+.++|+..+++++++||+|+|+....
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~-~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE-MNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH-HHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred CEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 68999999999998888764 5899999999988887 44555566 67888999999998888999999864311
Q ss_pred cccc------c-cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 290 DWLQ------R-DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 290 h~~~------~-~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
.... . ...++.++.|+| +|+.++++. . .+.+++.+.+.||+...
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~-~-----------~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT-E-----------KKAIEEAIAENGFEIIH 348 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE-EEEEEEEES-C-----------HHHHHHHHHHTTEEEEE
T ss_pred cccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC-C-----------HHHHHHHHHHcCCEEEE
Confidence 1111 1 134778888988 444444432 1 13456677888986543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-09 Score=106.01 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=73.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcccccccccc-cCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAYLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
..+|||||||+|.++..++++ .|+++|+++.+++.++..+..- ...++.+..+|+.. ++..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 368999999999999988765 4899999998887776443221 12346777777654 44446789999975
Q ss_pred ccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 286 RCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 286 ~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
.. .++... ...+++++.++|+|||++++...
T Consensus 156 ~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 156 ST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp CS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 43 232211 13588899999999999999753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-09 Score=110.55 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=91.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhcc--cCCcchhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAYS--TYPRTYDLLHAWT 528 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~~--~~p~tfDlvh~~~ 528 (617)
..-.+|||+|||+|.++..|+++ +. .++.+|.+.+++.+.++ |+-..+...+.++. .+|..||+|.+..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcc
Confidence 34457999999999999999876 44 45555533566555544 32111211112221 2455699999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------HHHHHHHhhhhcccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------------------~~~~~~~~~~~~~w~~~ 581 (617)
+++|+... +...+|.++.|+|||||+++|.+... ..+++++++++.+++.+
T Consensus 241 ~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 241 FLHHFDVA--TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp CGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred hhccCCHH--HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 99977322 44689999999999999999876431 15678889999999986
Q ss_pred cccccCCCCCCCCCCeEEEEEEec
Q 007128 582 ATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
++.+ . .....+++++++
T Consensus 319 -~~~~--~----~~~~~~i~~~~~ 335 (335)
T 2r3s_A 319 -QLHS--L----PTTQQQVIVAYK 335 (335)
T ss_dssp -EEEC--C----TTSSSEEEEEEC
T ss_pred -eEEE--C----CCCceeEEEecC
Confidence 5543 2 123467777654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.7e-09 Score=97.96 Aligned_cols=106 Identities=7% Similarity=0.061 Sum_probs=77.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccch-hhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSI-HNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~-~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.+ .++.+.++. .+||+|.++.+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 3799999999999999998655 5566663 5666666554 22 1111 233333332 79999998766
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~ 580 (617)
.++..++.++.|+ |||.+++.+ ......++.+.++..+|+.
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNV 151 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeE
Confidence 2677899999999 999999987 5567778888999888876
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-09 Score=110.00 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=80.4
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
-.|.+.+...+..... .....+..+|||||||+|.++..+++. .|+++|+++.+++.++..+......++.+..+
T Consensus 68 ~~Y~e~m~~~~~~l~~-~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~ 146 (317)
T 3gjy_A 68 FEYMRWIATGARAFID-AHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVD 146 (317)
T ss_dssp SHHHHHHHHHHHHHHH-HHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEES
T ss_pred hHHHHHHHHHHHhhcc-cCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEEC
Confidence 4677776654431000 002232348999999999999999873 47889998877766654333222335677777
Q ss_pred ccccc--CCCCCccccccccccccccccc----cceEEEEecccccCCceeeecCh
Q 007128 268 GTKRL--PYPSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 268 d~~~l--pf~~~sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p 317 (617)
|.... .+++++||+|++... .++... ...+++++.++|+|||+|++...
T Consensus 147 Da~~~l~~~~~~~fDvIi~D~~-~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 147 DARMVAESFTPASRDVIIRDVF-AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CHHHHHHTCCTTCEEEEEECCS-TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cHHHHHhhccCCCCCEEEECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 87654 345689999997532 222111 13588999999999999998653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.4e-09 Score=101.07 Aligned_cols=114 Identities=15% Similarity=0.228 Sum_probs=72.2
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEE----e----eccc--ccchhhhhhhcccCC-cc--hhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLI----Y----DRGL--IGSIHNWCEAYSTYP-RT--YDL 523 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~----~----~rgl--~~~~~~~~e~~~~~p-~t--fDl 523 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.|++.+ . .+|+ +-.++.-.+.++ ++ ++ +|+
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGVGELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCCCEEEE
Confidence 35999999999999999987 55 5666664 5666642 1 2333 111121112233 23 33 444
Q ss_pred hhhhhhhh--hhhhcCCCcccchhhccccccCcceEEEecCh------------------h-HHHHHHHhhhhcccccc
Q 007128 524 LHAWTVFS--DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------------S-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 524 vh~~~~~~--~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------------~-~~~~~~~~~~~~~w~~~ 581 (617)
+.++.... |+. +...+|.|+.|+|||||.+++.... . ..+.+++++...+|+..
T Consensus 105 ~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 105 LMPWGSLLRGVLG----SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp ESCCHHHHHHHHT----SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred Eccchhhhhhhhc----cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 44443432 444 6689999999999999999996321 1 23458888888888863
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-09 Score=106.79 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=75.5
Q ss_pred eEEEeeccccccccccccc-----chhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC----CCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS-----SDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY----PSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~-----~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf----~~~sFDlV~~s 285 (617)
.+|||+|||+|..+..|++ ..|+++|+++.++..++. .+...++ ++.+...|+..++. .+++||+|++.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d 163 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD 163 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence 6899999999999988875 258999999988776663 3444455 57777888777654 25789999975
Q ss_pred cc-----ccc------------cccccceEEEEecccccCCceeeecChhhhcC
Q 007128 286 RC-----RID------------WLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ 322 (617)
Q Consensus 286 ~~-----l~h------------~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~ 322 (617)
-- .++ .......+|.++.++|||||++++++....+.
T Consensus 164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 21 011 11222457888999999999999986554433
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-09 Score=109.73 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=74.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH-h----CCCcccccccccc-cCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE-R----GIPAYLGVLGTKR-LPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~-r----g~~~~~~~~d~~~-lpf~~~sFDlV~~ 284 (617)
..+|||||||+|.++..++++ .|+++|+++.++..++..+... . ..++.+..+|+.. ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 368999999999999998865 5899999998887776443321 1 2356777778765 3445678999998
Q ss_pred ccccccc---ccc----cceEEEEecccccCCceeeecC
Q 007128 285 SRCRIDW---LQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 285 s~~l~h~---~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
... .++ ... ...+++++.++|+|||++++..
T Consensus 158 d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 654 343 111 1357899999999999999964
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-09 Score=104.18 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=70.6
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-CC------CCCcccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-PY------PSRSFEL 281 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-pf------~~~sFDl 281 (617)
.+|||||||+|..+..|++. .|+++|+++.++..++. ...+.++ ++.+..+|+... +. ++++||+
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 58999999999988888753 58999999988877774 3334454 366777776542 32 2578999
Q ss_pred ccccccccccccccceEEEEecccccCCceeeecC
Q 007128 282 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 282 V~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|++... ......++.++.++|||||++++..
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 997543 2223468889999999999999854
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-09 Score=100.86 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=78.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCc--eEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccC--Ccchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKD--VWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STY--PRTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~--~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~--p~tfDlvh~~~ 528 (617)
-.+|||+|||+|.++..|++.+ . .|+.+|. +.+++.+.++ |+ ..+...+.++ ... ..+||+|.+..
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 3479999999999999999875 4 4666664 5777666654 32 1122112222 111 27899999876
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWE 579 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~ 579 (617)
.+. ++..++.++.|+|||||.+++.... ...+++.+++++.+|+
T Consensus 117 ~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 117 SGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp CTT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred CCc-------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence 654 5678999999999999999998544 5677888888888884
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-09 Score=113.76 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=81.8
Q ss_pred HHHHHHhhccccCccchhhHHHhhhc------chhhHhhhcCC---ceEEEEeecCCC-CCceEEEeeccc---ccchhh
Q 007128 443 VDSYWNLLSPKIQSNSLRNLMDMKAH------LGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHN 509 (617)
Q Consensus 443 V~~y~~~l~~~i~~~~~r~vLD~g~G------~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~ 509 (617)
...|.+.|.++.. +-.+|||+||| +|+.+..|+++ +. .|+.+|. ++|.. ....+ .|...+
T Consensus 203 ~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~~--~~~rI~fv~GDa~d 275 (419)
T 3sso_A 203 TPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSHV--DELRIRTIQGDQND 275 (419)
T ss_dssp HHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGGG--CBTTEEEEECCTTC
T ss_pred HHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHhh--cCCCcEEEEecccc
Confidence 4467777765332 23579999999 78888777753 44 4555663 45531 11122 233322
Q ss_pred hhhhcc----cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh------------------hHHH
Q 007128 510 WCEAYS----TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ------------------SVVD 567 (617)
Q Consensus 510 ~~e~~~----~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~------------------~~~~ 567 (617)
.+|. .-+++||+|+++.. .+.. +...+|.|+.|+|||||+++|.|-. .+++
T Consensus 276 --lpf~~~l~~~d~sFDlVisdgs-H~~~----d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~ 348 (419)
T 3sso_A 276 --AEFLDRIARRYGPFDIVIDDGS-HINA----HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLG 348 (419)
T ss_dssp --HHHHHHHHHHHCCEEEEEECSC-CCHH----HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHH
T ss_pred --cchhhhhhcccCCccEEEECCc-ccch----hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHH
Confidence 1122 00389999998643 2222 5678999999999999999997654 2688
Q ss_pred HHHHhhhhccccc
Q 007128 568 FVKKYLRALNWEA 580 (617)
Q Consensus 568 ~~~~~~~~~~w~~ 580 (617)
.++++++.++|..
T Consensus 349 ~lk~l~D~l~~~~ 361 (419)
T 3sso_A 349 LLKSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHhcccc
Confidence 8999999999987
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-09 Score=111.13 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=69.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhccc-CCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYST-YPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~-~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++.+. .+|+.+|. +.+++.+.++ |+ +..++.-.+.++. -+++||+|.+..++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 4699999999999999987654 14556663 5666666554 21 1111111122221 13899999999888
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|+..+..+...+|.++.|+|||||++++..+.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 763212236778999999999999999998765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5e-09 Score=110.56 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=90.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhhc-ccCCcchhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEAY-STYPRTYDLLHAWTV 529 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~~-~~~p~tfDlvh~~~~ 529 (617)
..-.+|||+|||+|.++..|+++ ++. ++.+|.+.+++.+.++ |+-..+...+.++ ..+|..||+|.+..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v 258 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFV 258 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCE---EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccc
Confidence 34457999999999999999865 343 3333435666665543 3211111111221 234556999999999
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh--h------------------------HHHHHHHhhhhcccccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ--S------------------------VVDFVKKYLRALNWEAVAT 583 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~--~------------------------~~~~~~~~~~~~~w~~~~~ 583 (617)
++|+... +...+|.++.|+|||||+++|.+.. . ..+++++++++.+|+.+ +
T Consensus 259 l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~-~ 335 (360)
T 1tw3_A 259 LLNWPDH--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE-E 335 (360)
T ss_dssp GGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE-E
T ss_pred ccCCCHH--HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEE-E
Confidence 9876522 2257999999999999999998754 1 13568888999999886 4
Q ss_pred cccCCCCCCC-CCCeEEEEEEec
Q 007128 584 TADASSDSDK-DGDEVVFIVQKK 605 (617)
Q Consensus 584 ~~~~~~~~~~-~~~~~~l~~~K~ 605 (617)
+.. ..... .-...++.|+|+
T Consensus 336 ~~~--~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 336 VRQ--LPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEE--EECSSSSCEEEEEEEEEC
T ss_pred EEe--CCCCcccCccEEEEEEeC
Confidence 443 11100 011578888884
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-08 Score=97.24 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=62.3
Q ss_pred eEEEeecccccccccccccc-------------hhhhhccCCCccchhhhHHHHHhCCCcccc-cccccccC--------
Q 007128 216 RTVLDVGCGVASFGAYLLSS-------------DVITMSLAPNDVHQNQIQFALERGIPAYLG-VLGTKRLP-------- 273 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-------------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~-~~d~~~lp-------- 273 (617)
.+|||+|||+|.++..|++. .|+++|+++.... ..+.+. .+|+...+
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL-----------EGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC-----------TTCEEECSCCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC-----------CCCeEEEeccCCCHHHHHHHHHh
Confidence 68999999999999888754 3889999884210 123344 45544332
Q ss_pred CCCCccccccccccc---ccccccc-------ceEEEEecccccCCceeeecCh
Q 007128 274 YPSRSFELAHCSRCR---IDWLQRD-------GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 274 f~~~sFDlV~~s~~l---~h~~~~~-------~~~L~el~RvLrPGG~lvis~p 317 (617)
+++++||+|+|..+. .++..+. ..++.++.++|||||.+++..+
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345689999985431 1222221 3688999999999999999754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-09 Score=107.74 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=56.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccc----c-chhhh--hhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLI----G-SIHNW--CEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~----~-~~~~~--~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
..|||+|||+|+++..|+++ . .|+.+|...|+..+.++... + .+... +.++..+| ++||+|.|+.. .
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~---~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~-~ 150 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-P---HVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG-E 150 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-T---TEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-C
T ss_pred CEEEEeCcCCCHHHHHHHHc-C---cEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc-c
Confidence 36999999999999999987 3 34444432232212111110 0 11112 22333344 89999998765 2
Q ss_pred hhhhcCCCc---ccchhhccccccCcc--eEEEecC
Q 007128 532 DIEKRGCSG---EDLLLEMDRILRPTG--FVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~---~~~l~Em~RiLrPgG--~~ii~~~ 562 (617)
+...+.-+. ..+|.++.|+||||| .|++...
T Consensus 151 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 151 SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 110000000 128899999999999 9988653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.9e-09 Score=103.47 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=68.3
Q ss_pred hhHHHhhhcchhhHhhhc--CCceEEEEeecCCC--CCceEEE---eec----ccccchhhhhhhcccCC----cchhhh
Q 007128 460 RNLMDMKAHLGSFAAALK--EKDVWVMSVVPEDG--PNTLKLI---YDR----GLIGSIHNWCEAYSTYP----RTYDLL 524 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~--~~~~~v~~v~~~~~--~~~l~~~---~~r----gl~~~~~~~~e~~~~~p----~tfDlv 524 (617)
..|||+|||+|.++..|+ ..+. +|+.+|. +.|++.| .++ |+ ..+...+.+...+| ..+|.|
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEE
Confidence 359999999999999998 4455 5666673 4565554 433 43 11111122222233 344444
Q ss_pred hhhhhhhhh-hhcCCCcccchhhccccccCcceEEEecC-------------------hhH-HH-HHHHhhhhcccccc
Q 007128 525 HAWTVFSDI-EKRGCSGEDLLLEMDRILRPTGFVIIRDK-------------------QSV-VD-FVKKYLRALNWEAV 581 (617)
Q Consensus 525 h~~~~~~~~-~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-------------------~~~-~~-~~~~~~~~~~w~~~ 581 (617)
+++..+.+. ...+-+...+|.|+.|+|||||.++|..+ .+. .+ ++...+.+.+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~ 180 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRID 180 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCee
Confidence 443222211 11122456789999999999999999111 011 11 37778888888763
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-08 Score=101.25 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=83.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--ccccccccc-ccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTK-RLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~-~lpf~~~sFDlV~~s~~l 288 (617)
.+|||||||+|.++..++.. .|+++|+++..+..|+ +.+...++. +.+..+|.. .++. ...||+|+.....
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~G 94 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGMG 94 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCCC
Confidence 68999999999999988874 4899999998888887 455556663 667777763 3332 2269988865431
Q ss_pred cccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
-.. ...++.+..+.|+|+|+|+++... . ...+.+.+.+.||.++..
T Consensus 95 g~~---i~~Il~~~~~~L~~~~~lVlq~~~----~------~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 95 GRL---IARILEEGLGKLANVERLILQPNN----R------EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp HHH---HHHHHHHTGGGCTTCCEEEEEESS----C------HHHHHHHHHHTTEEEEEE
T ss_pred hHH---HHHHHHHHHHHhCCCCEEEEECCC----C------HHHHHHHHHHCCCEEEEE
Confidence 111 134677888999999999996321 1 256778889999976653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-09 Score=109.28 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=70.4
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH-h---CCCcccccccccc-cCCCCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE-R---GIPAYLGVLGTKR-LPYPSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~-r---g~~~~~~~~d~~~-lpf~~~sFDlV~~s~ 286 (617)
.+|||||||+|.++..+++. .|+++|+++.+++.++..+... . ..++.+..+|... ++..+++||+|++..
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~ 197 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS 197 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECC
Confidence 68999999999999988865 5899999998777666432210 1 2346677777654 333457899999754
Q ss_pred cccccccc--c--ceEEEEecccccCCceeeecC
Q 007128 287 CRIDWLQR--D--GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 287 ~l~h~~~~--~--~~~L~el~RvLrPGG~lvis~ 316 (617)
. .++... . ..+++++.++|+|||++++..
T Consensus 198 ~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 198 S-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp C-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 2 222111 1 357889999999999999964
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-08 Score=101.63 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH----HhCCCcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL----ERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~----~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
..+|||||||+|.++..++++ .|+++|+++.+++.++..+.. -....+.+..+|..... ++||+|++..
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~-- 147 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ-- 147 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS--
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC--
Confidence 368999999999988877654 588999999888777643321 11234666777776654 7899999752
Q ss_pred cccccccceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.++..+++++.++|+|||++++..
T Consensus 148 ----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 ----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 122347889999999999999863
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-08 Score=108.35 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=76.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC--CCCCccccccc----c
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP--YPSRSFELAHC----S 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp--f~~~sFDlV~~----s 285 (617)
.+|||+|||+|..+..+++. .|+++|+++..+..++ +.+...++++.+..+|...++ +++++||+|++ +
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 326 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCC
Confidence 68999999999998888764 5899999998887776 344455667778888887766 56678999985 2
Q ss_pred c-ccccccccc----------------ceEEEEecccccCCceeeecChhhh
Q 007128 286 R-CRIDWLQRD----------------GILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 286 ~-~l~h~~~~~----------------~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
. ..++..++. ..+|.++.++|||||++++++....
T Consensus 327 g~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 327 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred cccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1 112111110 2578899999999999999865443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-09 Score=109.26 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=69.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-------------ccchhhhhhhcc---cC---Cc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-------------IGSIHNWCEAYS---TY---PR 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-------------~~~~~~~~e~~~---~~---p~ 519 (617)
.+|||+|||+|.++..|++.+. ..|+.+|. +.+++.+.++.- +..+..-++.++ .+ ++
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 4699999999999999987543 15666664 577766655421 111111112222 13 25
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+||+|.|..+++++..+..++..+|.++.|+|||||.+++..+..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 999999999988762122245789999999999999999987754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-08 Score=102.58 Aligned_cols=110 Identities=11% Similarity=0.148 Sum_probs=76.9
Q ss_pred cchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec-----cc--ccch-hhhhhhcccCC-cchhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR-----GL--IGSI-HNWCEAYSTYP-RTYDL 523 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r-----gl--~~~~-~~~~e~~~~~p-~tfDl 523 (617)
..-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.+ .|..+. ++ ++||+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~---~~~~~fD~ 182 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---ISDQMYDA 182 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---CCSCCEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc---CcCCCccE
Confidence 33457999999999999999876 45 5666664 5666655554 32 1111 122222 33 78999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccc
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~ 581 (617)
|.+ +.. +...+|.++.|+|||||.+++..+.. ..+++.+.+...+|..+
T Consensus 183 Vi~-----~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 183 VIA-----DIP----DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EEE-----CCS----CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred EEE-----cCc----CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 987 232 66789999999999999999988765 56677777777777654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-08 Score=109.68 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=62.7
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cccc--chhhhhhh-cccCC-cchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIG--SIHNWCEA-YSTYP-RTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~--~~~~~~e~-~~~~p-~tfDlvh~~~ 528 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ |+-. .++..+.+ +..++ ++||+|.++-
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 57999999999999999987 45 4566664 5666655543 3211 11111111 12234 7999999988
Q ss_pred hhhhhhh-cCCCcccchhhccccccCcceEEEecC
Q 007128 529 VFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 529 ~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.|.+... ..-....++.++.|+|||||.++|...
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 8764320 111223679999999999999998544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-08 Score=101.55 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=63.2
Q ss_pred hhhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CC------ceEEEeec----cc---ccchh-h-h-hhhcccCC
Q 007128 459 LRNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PN------TLKLIYDR----GL---IGSIH-N-W-CEAYSTYP 518 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~------~l~~~~~r----gl---~~~~~-~-~-~e~~~~~p 518 (617)
-.+|||+|||+|.++..|+++. .. |+.+|. +. +++.+.++ |+ +..++ + . .+.++ ++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~---v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~ 119 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGH---VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IA 119 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCE---EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCE---EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CC
Confidence 3479999999999999999863 53 444453 33 67666554 22 11111 1 1 11222 33
Q ss_pred -cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 519 -RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 519 -~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
++||+|++..++.|+. +...++..++++++|||++++.+
T Consensus 120 ~~~fD~v~~~~~l~~~~----~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFA----SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TCCCSEEEEESCGGGSS----CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCEEEEEEccchhhCC----CHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999999999876 55666666677777799999964
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-08 Score=100.16 Aligned_cols=117 Identities=8% Similarity=0.112 Sum_probs=74.7
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc-CC-cchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST-YP-RTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~-~p-~tfDlvh~~~~ 529 (617)
.|||+|||+|.++..|++. +. +|+.+|. +.+++.|.++ |+ +-.++.-.+.++. ++ ++||.|+++..
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5999999999999999875 44 6777774 5777666554 33 1122211112221 33 89999876422
Q ss_pred hhhh----hhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhccccc
Q 007128 530 FSDI----EKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 530 ~~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~ 580 (617)
.++. ...+.....+|.++.|+|||||.|++.. .....+.+...+...+|+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 1110 0122224678999999999999998875 5555666677776666654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=8e-09 Score=103.71 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=65.3
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccc---cch-hhhhhhcccCC--cchhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLI---GSI-HNWCEAYSTYP--RTYDLL 524 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~---~~~-~~~~e~~~~~p--~tfDlv 524 (617)
-++|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+- -.+ .+..+.++..+ .+||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 357999999999999999986 55 4566664 5676666555 431 111 12223334443 499999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++.... +...++.++.|+|||||++++.+..
T Consensus 141 ~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 141 FIDADKP-------NNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp EECSCGG-------GHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EECCchH-------HHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 9755333 3456899999999999999987664
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.1e-09 Score=105.55 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=69.2
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH-----------hCCCcccccccccc-cCCCCCccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE-----------RGIPAYLGVLGTKR-LPYPSRSFE 280 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~-----------rg~~~~~~~~d~~~-lpf~~~sFD 280 (617)
.+|||||||+|.++..++++ .|+++|+++.++..++..+ .. ...++.+..+|+.. ++. +++||
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD 154 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD 154 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence 68999999999999888765 5899999998877776443 11 12346667777544 222 57899
Q ss_pred cccccccccccccc----cceEEEEecccccCCceeeecC
Q 007128 281 LAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 281 lV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
+|++... .++... ...+++++.++|+|||++++..
T Consensus 155 ~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 155 VIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9997643 222111 1347889999999999999964
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-08 Score=100.54 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccc----ccCCCC--Cccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTK----RLPYPS--RSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~----~lpf~~--~sFDlV 282 (617)
.+|||||||+|..+..|+.. .|+++|+++..+..++... .+.++ .+.+..+|+. .++..+ ++||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYW-QKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 58999999999988888763 5899999998877776433 33344 3566666643 334434 789999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecCh
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++... ..+...++.++.++|+|||++++...
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 86543 22334578999999999999999643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-09 Score=111.78 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=73.4
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---Ccccccccccc-cCC---CCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKR-LPY---PSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~-lpf---~~~sFDlV~~s 285 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+.. ++. ..++||+|++.
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~-~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSL-AHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHH-HHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 68999999999999998873 5899999999998887 44555555 56788888755 221 24589999974
Q ss_pred cccc--------ccccccceEEEEecccccCCceeeecChhh
Q 007128 286 RCRI--------DWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~--------h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
--.. ........++.++.++|+|||+++++....
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3211 111111235566789999999999976443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-08 Score=103.36 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=74.7
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec-------ccccchhhhhhhccc---------C-Cc
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR-------GLIGSIHNWCEAYST---------Y-PR 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r-------gl~~~~~~~~e~~~~---------~-p~ 519 (617)
.+|||+|||+|.++..|+.+ +. +|+.+|. +.+++.|.++ |+-..+.-.+.++.. + +.
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~~---~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEKA---EVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTTE---EEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 47999999999999999876 24 5666664 4555544432 221001111112211 3 38
Q ss_pred chhhhhhhhhhhhh--------------hhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhccccc
Q 007128 520 TYDLLHAWTVFSDI--------------EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 520 tfDlvh~~~~~~~~--------------~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~ 580 (617)
+||+|.++--|... ....++++.++.++.++|||||.|++-.+.....++...+..- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 99999987333211 1133567889999999999999999988888777777777763 654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-09 Score=107.76 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=57.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeec--CCCCCceEEEeec--ccccchhhhhh-hcccCC-cchhhhhhhhhhh--
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVP--EDGPNTLKLIYDR--GLIGSIHNWCE-AYSTYP-RTYDLLHAWTVFS-- 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~--~~~~~~l~~~~~r--gl~~~~~~~~e-~~~~~p-~tfDlvh~~~~~~-- 531 (617)
..|||+|||+|+++..|++++ .|..|.. +.++.++..+..+ |. ..+...+. ++..+| .+||+|.|+..++
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGW-NLVRLQSGVDVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTG-GGEEEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHHHHHhhhcCC-CCeEEEeccccccCCcCCCCEEEECCccccC
Confidence 469999999999999999873 2333332 1112232221111 11 11111112 233333 8999999976553
Q ss_pred -hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 -DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 -~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+...+. ....+|.++.|+|||||.|++...
T Consensus 162 ~~~~d~~-~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 162 NPTVEAG-RTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp SHHHHHH-HHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cchhhHH-HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 111000 011489999999999999999654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-08 Score=99.75 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.7
Q ss_pred hhHHHhhhcchhhHhhhcCC------ceEEEEeecCCC-CCceEEEeecc-cccchh-hhhhh--cccCC-cchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK------DVWVMSVVPEDG-PNTLKLIYDRG-LIGSIH-NWCEA--YSTYP-RTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~------~~~v~~v~~~~~-~~~l~~~~~rg-l~~~~~-~~~e~--~~~~p-~tfDlvh~~ 527 (617)
.+|||+|||+|.+++.|++. +. .|+.+|. +.+++.|...+ -+-.++ +..+. ++..+ .+||+|+++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~---~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC---QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC---EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC---EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 47999999999999999875 44 4556663 67766664211 011111 21111 22223 379999975
Q ss_pred hhhhhhhhcCCCcccchhhccc-cccCcceEEEecChh-----HHHHHHHhhhhc--cccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDR-ILRPTGFVIIRDKQS-----VVDFVKKYLRAL--NWEA 580 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~R-iLrPgG~~ii~~~~~-----~~~~~~~~~~~~--~w~~ 580 (617)
.. | .+...+|.|+.| +|||||++++.+... .-..+.++++.. +++.
T Consensus 160 ~~--~-----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 160 NA--H-----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp SS--C-----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred Cc--h-----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 44 2 156789999998 999999999987421 112567777766 4655
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.9e-09 Score=100.36 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=76.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc-C--Ccchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST-Y--PRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~-~--p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.|.++ |+-..+...+.++.. + ...||+|.+...+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~- 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG- 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-
T ss_pred CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-
Confidence 4699999999999999998865 5666664 5777766654 332122222222222 1 2579999864422
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~ 580 (617)
+.. ++.++.|+|||||.+++... .+...++.++++..+++.
T Consensus 133 -------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i 174 (204)
T 3njr_A 133 -------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL 174 (204)
T ss_dssp -------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred -------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcE
Confidence 455 99999999999999999765 456777888888888776
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-08 Score=95.78 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=68.9
Q ss_pred hhHHHhhhcchhhHhhhcCC-c----------eEEEEeecCCCCCceEEEeeccc-ccchhhhh--hh-cccCC-cchhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-D----------VWVMSVVPEDGPNTLKLIYDRGL-IGSIHNWC--EA-YSTYP-RTYDL 523 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~----------~~v~~v~~~~~~~~l~~~~~rgl-~~~~~~~~--e~-~~~~p-~tfDl 523 (617)
.+|||+|||+|.++..|+++ + . .|+.+|...+.....-+-+ .+.+.+.. +. ...++ ++||+
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~ 100 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVG---FVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV 100 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCC---EEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCc---eEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence 47999999999999999875 3 4 3455553222110000001 12222110 00 11133 68999
Q ss_pred hhhhhhhh----hhhhc---CCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCC
Q 007128 524 LHAWTVFS----DIEKR---GCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDG 595 (617)
Q Consensus 524 vh~~~~~~----~~~~~---~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 595 (617)
|.|+..+. +...+ ......++.++.|+|||||.|++.+... ...++...+... |..+ ....+ .......
T Consensus 101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v-~~~~~-~~~~~~~ 177 (196)
T 2nyu_A 101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNV-RIIKP-EASRKES 177 (196)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEE-EEECC-C------
T ss_pred EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcce-EEECC-cccCccC
Confidence 99754322 11100 0011478999999999999999985432 233444444432 4433 22211 1112234
Q ss_pred CeEEEEEEe
Q 007128 596 DEVVFIVQK 604 (617)
Q Consensus 596 ~~~~l~~~K 604 (617)
.|.+++++.
T Consensus 178 ~e~~~v~~g 186 (196)
T 2nyu_A 178 SEVYFLATQ 186 (196)
T ss_dssp --EEEEEEE
T ss_pred ceEEEEeee
Confidence 567777664
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-08 Score=95.64 Aligned_cols=107 Identities=9% Similarity=0.031 Sum_probs=69.2
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||+|||+|.++..++.. .|+++|+++.++..++. +..++.+..+|+..+| ++||+|+++..++++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-----~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR-----NCGGVNFMVADVSEIS---GKYDTWIMNPPFGSV 123 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHH-----HCTTSEEEECCGGGCC---CCEEEEEECCCC---
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-----hcCCCEEEECcHHHCC---CCeeEEEECCCchhc
Confidence 368999999999999888765 48899988876655542 2115677888888765 689999998775544
Q ss_pred ccc-cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 292 LQR-DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 292 ~~~-~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
... ...+++++.++| |+.+++..+.. +..+.+.+...|
T Consensus 124 ~~~~~~~~l~~~~~~~--g~~~~~~~~~~----------~~~~~~~~~~~g 162 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS--MWIYSIGNAKA----------RDFLRREFSARG 162 (200)
T ss_dssp ----CHHHHHHHHHHE--EEEEEEEEGGG----------HHHHHHHHHHHE
T ss_pred cCchhHHHHHHHHHhc--CcEEEEEcCch----------HHHHHHHHHHCC
Confidence 332 124677788887 55443332211 234556666666
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.8e-09 Score=102.91 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=70.8
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----------cc--ccchh-hhhhhccc-CC-cch
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----------GL--IGSIH-NWCEAYST-YP-RTY 521 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----------gl--~~~~~-~~~e~~~~-~p-~tf 521 (617)
..|||+|||+|.++..|++. +. +|+.+|. +.|++.|.++ ++ +-.++ +..+.++. ++ ++|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 35999999999999999976 34 5666664 5666655432 22 11111 11111221 33 899
Q ss_pred hhhhhhhhhhhh----hhcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhcc-ccc
Q 007128 522 DLLHAWTVFSDI----EKRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALN-WEA 580 (617)
Q Consensus 522 Dlvh~~~~~~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~-w~~ 580 (617)
|.|+++..-++. .+.+.....+|.++.|+|||||.|+|. +.....+.+.+.+.... |+.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 998753222211 112223357999999999999999885 55556666666665553 544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-08 Score=101.14 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=70.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCcc---cccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSF---ELAHCSRC 287 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sF---DlV~~s~~ 287 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++. +.+..+|... +++ ++| |+|+++--
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPP 201 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCC
T ss_pred CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCC
Confidence 58999999999999888765 68999999988888774 44445553 7778888765 233 579 99998621
Q ss_pred ccc----------cc--------cccceEEEEec-ccccCCceeeecC
Q 007128 288 RID----------WL--------QRDGILLLELD-RLLRPGGYFAYSS 316 (617)
Q Consensus 288 l~h----------~~--------~~~~~~L~el~-RvLrPGG~lvis~ 316 (617)
.+. +. .+...+++++. +.|+|||++++..
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 110 10 11124788899 9999999999864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-09 Score=107.92 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=67.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+-..+...+.++.. -+.+||+|.++..+.+
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 3699999999999999999875 5667774 5777666554 321112111112111 2389999999988887
Q ss_pred hhhcCCCcccchhhccccccCcceEEEec
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.. +....+.|+.|+|||||++++..
T Consensus 157 ~~----~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 157 PD----YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp GG----GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred cc----hhhhHHHHHHhhcCCcceeHHHH
Confidence 65 44568899999999999987765
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-08 Score=104.94 Aligned_cols=111 Identities=11% Similarity=0.181 Sum_probs=79.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC--Ccchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~ 532 (617)
..|||+|||+|+|+..+++.+.. .|+.+|. +.+++.|.++ |+-..+...+.+...+ +++||+|.++..
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p--- 201 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV--- 201 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC---
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc---
Confidence 36999999999999999987653 4777774 5777766554 3321122222332223 489999987433
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecCh-------hHHHHHHHhhhhccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-------SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-------~~~~~~~~~~~~~~w~~ 580 (617)
.+...++.++.|+|||||++++.+.. ...+++.+.+...+|+.
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCee
Confidence 24467999999999999999996654 35678899999999987
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-08 Score=96.50 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=64.1
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCC-----------CCcccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP-----------SRSFEL 281 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~-----------~~sFDl 281 (617)
+.+|||+|||+|.++..++++ .|+|+|+++... ..++.+.++|+...+.. .++||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 368999999999999999875 589999988421 12456777787665421 148999
Q ss_pred ccccccc----cccccc------cceEEEEecccccCCceeeecCh
Q 007128 282 AHCSRCR----IDWLQR------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 282 V~~s~~l----~h~~~~------~~~~L~el~RvLrPGG~lvis~p 317 (617)
|+|.... .+..+. ...++.++.++|||||.|++..+
T Consensus 95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9985321 111111 13478888999999999998654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.1e-09 Score=105.49 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=55.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeecccc----c-chhhh--hhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLI----G-SIHNW--CEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~----~-~~~~~--~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
..|||+|||+|+++..|+++ . .|+.+|...|+..+.++.+. + .+... ..++..+| ++||+|.|+..+.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ-P---NVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIGES 159 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS-T---TEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCCCC
T ss_pred CEEEEeccCCCHHHHHHHHc-C---CEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCCcC
Confidence 36999999999999999987 3 34444432232222112110 0 11111 12333344 8999999876521
Q ss_pred hhhhcCCCc---ccchhhccccccCcc--eEEEec
Q 007128 532 DIEKRGCSG---EDLLLEMDRILRPTG--FVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~---~~~l~Em~RiLrPgG--~~ii~~ 561 (617)
...+.-+. ..+|.++.|+||||| .|++..
T Consensus 160 -~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 160 -NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred -CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 10000000 137899999999999 998854
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-08 Score=108.71 Aligned_cols=103 Identities=18% Similarity=0.035 Sum_probs=73.2
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccccc-CCCCCccccccccccccc-
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL-PYPSRSFELAHCSRCRID- 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l-pf~~~sFDlV~~s~~l~h- 290 (617)
+.+|||+|||+|.++..++.. .|+++|+++.+++.++ +.+...++...+.++|+..+ +...+.||+|++.--.+.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~-~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLD-QAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 368999999999999998865 4999999999988887 44555566656667776654 222344999997532111
Q ss_pred -------cccccceEEEEecccccCCceeeecChh
Q 007128 291 -------WLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 291 -------~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.......++.++.++|+|||++++.+..
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1112235788889999999999975433
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.5e-08 Score=93.41 Aligned_cols=116 Identities=11% Similarity=0.003 Sum_probs=78.1
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
+.+|||+|||+|.++..+++. .|+++|+++.++..++. .+...++++.+..+|+..++ ++||+|+++......
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ 125 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence 368999999999999988765 48999999988777663 33344557788888888764 489999987653333
Q ss_pred cc-ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 292 LQ-RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 292 ~~-~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
.. ....++.++.++| ||.+++... .+. ..+.+.+.++..||+.
T Consensus 126 ~~~~~~~~l~~~~~~l--~~~~~~~~~-----~~~---~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS--DVVYSIHLA-----KPE---VRRFIEKFSWEHGFVV 169 (207)
T ss_dssp STTTTHHHHHHHHHHC--SEEEEEEEC-----CHH---HHHHHHHHHHHTTEEE
T ss_pred cCCchHHHHHHHHHhc--CcEEEEEeC-----CcC---CHHHHHHHHHHCCCeE
Confidence 21 1134677788888 555444310 111 1245666777888754
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.6e-09 Score=102.13 Aligned_cols=96 Identities=14% Similarity=0.235 Sum_probs=69.0
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc-cC--------------
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR-LP-------------- 273 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~-lp-------------- 273 (617)
.+|||||||+|.++..|++. .|+++|+++..+..++... ...+.. +.+..+|... ++
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 58999999999998888754 5899999998777766433 333432 5566666543 12
Q ss_pred CCC--CccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 274 YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 274 f~~--~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|++ ++||+|++.... .....++.++.++|+|||++++..
T Consensus 141 f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 789999976432 222457899999999999999965
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.7e-08 Score=103.98 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=80.2
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeeccccc-chhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIG-SIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~-~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
......|||+|||+|.++..|+++ ++. ++.+|.+.+++.+.++.-+. ..+|..++ +|.. |+|++..++++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSIN---AINFDLPHVIQDAPAFSGVEHLGGDMFDG---VPKG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCE---EEEEehHHHHHhhhhcCCCEEEecCCCCC---CCCC-CEEEEechhhc
Confidence 455678999999999999999874 443 33334345555444432111 12233233 4544 99999999987
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh------------------------------HHHHHHHhhhhccccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------------------------VVDFVKKYLRALNWEAVA 582 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------------------------~~~~~~~~~~~~~w~~~~ 582 (617)
.... +...+|.++.|+|||||+|+|.|..- ..+++++++++.+++.+
T Consensus 274 ~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v- 350 (368)
T 3reo_A 274 WSDE--HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGF- 350 (368)
T ss_dssp BCHH--HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEE-
T ss_pred CCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeee-
Confidence 6533 33579999999999999999976431 13457788888888876
Q ss_pred ccc
Q 007128 583 TTA 585 (617)
Q Consensus 583 ~~~ 585 (617)
++.
T Consensus 351 ~~~ 353 (368)
T 3reo_A 351 KVA 353 (368)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.6e-08 Score=97.72 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=76.6
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccc---cch-hhhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLI---GSI-HNWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~---~~~-~~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+- -.+ .|..+.++. .+||+|.++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 46999999999999999886 45 4666664 5777766655 431 111 133333222 789999872
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhcc--cccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALN--WEAV 581 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~--w~~~ 581 (617)
. .+...++.++.|+|||||.+++..+ .....++.+.++..+ |..+
T Consensus 170 -----~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 170 -----L----PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp -----S----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCC
T ss_pred -----C----CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcccc
Confidence 2 2567899999999999999998875 446667788888777 7654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-08 Score=98.12 Aligned_cols=125 Identities=9% Similarity=0.036 Sum_probs=85.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|-++..++.. .|+++|+++.+++.+. +++...|++..+.+.|...-+ +.+.||+|++.-++ |
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti-~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTL-P 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCH-H
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHH-H
Confidence 468999999999999888654 6999999999888877 445556788888887766555 45789999988764 5
Q ss_pred ccccc-ceEEEEecccccCCceeeecCh-hhhcCCHHHHHHH-HHHHHHHHHhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSP-EAYAQDEEDLRIW-KEMSALVERMCW 342 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p-~~~~~~~~~~~~w-~~l~~l~~~~gf 342 (617)
+.++. ...+-++.+.|+|+|.++--.. ............| +.+++.+...||
T Consensus 210 ~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 210 CLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp HHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCC
Confidence 54442 2233399999999998875311 0111222222223 567778888888
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.1e-08 Score=98.44 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=96.2
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~ 251 (617)
|-.+.|.-...+|..+-..-...+.+.+. . +.+|||+|||+|.++..++.+ .|+++|+++..+..++
T Consensus 96 G~~~~~D~~k~~f~~~~~~er~ri~~~~~--------~--g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~ 165 (278)
T 3k6r_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVAK--------P--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV 165 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHCC--------T--TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred CEEEEEeccceEEcCCcHHHHHHHHHhcC--------C--CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 44444444455665554433334444432 2 368999999999999888765 4899999998777766
Q ss_pred hHHHHHhCCC--cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHH
Q 007128 252 IQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRI 329 (617)
Q Consensus 252 ~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~ 329 (617)
+.+..+++. +.+..+|+..++. .+.||.|++..- .....+|..+.++|+|||++.+........... ..
T Consensus 166 -~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~--~~ 236 (278)
T 3k6r_A 166 -ENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EP 236 (278)
T ss_dssp -HHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TT
T ss_pred -HHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEeeecccccch--hH
Confidence 455555654 5667788877663 478999986521 122346777889999999987643222111111 11
Q ss_pred HHHHHHHHHHhhhhh
Q 007128 330 WKEMSALVERMCWRI 344 (617)
Q Consensus 330 w~~l~~l~~~~gf~~ 344 (617)
.+.++++++..|++.
T Consensus 237 ~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 237 FETFKRITKEYGYDV 251 (278)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCcE
Confidence 356677778888754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-08 Score=107.98 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=92.8
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec---ccccchhhhhhhcc-cCCcchhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR---GLIGSIHNWCEAYS-TYPRTYDLLHAW 527 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r---gl~~~~~~~~e~~~-~~p~tfDlvh~~ 527 (617)
++++..+.|+|+|||+|.++.+|+++ ++ .++-.|.+.+++.|.++ +....+....-+|- .-+..+|++.+.
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~---~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~ 251 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGC---KITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILA 251 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSC---EEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCc---eeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEee
Confidence 56778889999999999999999875 33 22333444444443322 11111111111121 112568999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------------------HHHHHHHhhhhcccccc
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------------------~~~~~~~~~~~~~w~~~ 581 (617)
.++++..+. +...+|.++.|.|+|||.|+|.|..- ..++.++++++.+|+.+
T Consensus 252 ~vlh~~~d~--~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v 329 (353)
T 4a6d_A 252 RVLHDWADG--KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDF 329 (353)
T ss_dssp SSGGGSCHH--HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred eecccCCHH--HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 999876533 23578999999999999999988631 14578899999999987
Q ss_pred cccccCCCCCCCCCCeEEEEEEec
Q 007128 582 ATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
++.. . .....+++|+|.
T Consensus 330 -~v~~--~----~~~~~~i~ArKg 346 (353)
T 4a6d_A 330 -QFKK--T----GAIYDAILARKG 346 (353)
T ss_dssp -EEEC--C----SSSCEEEEEECC
T ss_pred -EEEE--c----CCceEEEEEEec
Confidence 6654 2 235678999994
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-08 Score=99.31 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=76.4
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc-CC-cchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST-YP-RTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~-~p-~tfDlvh~~~~ 529 (617)
.|||+|||+|.++..|++. +. +|+.+|. +.+++.|.++ |+ +-.++.-.+.++. ++ ++||+|+++..
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred eEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 5999999999999999875 34 5666664 5666665543 22 1111111122321 33 88999998633
Q ss_pred hhhh----hhcCCCcccchhhccccccCcceEEEec-ChhHHHHHHHhhhhcccccc
Q 007128 530 FSDI----EKRGCSGEDLLLEMDRILRPTGFVIIRD-KQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 530 ~~~~----~~~~c~~~~~l~Em~RiLrPgG~~ii~~-~~~~~~~~~~~~~~~~w~~~ 581 (617)
.++. +..+-....+|.++.|+|||||.+++.. .....+.+.+++...+|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence 2210 0011123579999999999999999876 44566778888888888764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-08 Score=104.64 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=71.8
Q ss_pred chhhHHHhhhcc---hhhHhhhcCC--ceEEEEeecCCC-CCceEEEeecc--------cccchhhh--hhhc----ccC
Q 007128 458 SLRNLMDMKAHL---GSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRG--------LIGSIHNW--CEAY----STY 517 (617)
Q Consensus 458 ~~r~vLD~g~G~---G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rg--------l~~~~~~~--~e~~----~~~ 517 (617)
.++.|||+|||+ |.++..+.+. +. .|+.+|. +.|++.+.++- +.+.+.+. .... ..+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 567899999999 9987766542 34 5666774 67877776552 12333221 1000 124
Q ss_pred C-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 P-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
| .+||+|.+..+|+|+... +...+|.|+.|+|||||+|+|.+..
T Consensus 154 d~~~~d~v~~~~vlh~~~d~--~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD--VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT--THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCEEEEEechhhhCCcH--HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4 689999999999988733 5889999999999999999999865
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-08 Score=108.32 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=73.5
Q ss_pred HHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhccc
Q 007128 444 DSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYST 516 (617)
Q Consensus 444 ~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~ 516 (617)
..|.+.|........-.+|||+|||+|.++..|++.+.. .|+.+|..+|++.|.++ |+ +-.++.-.+.++
T Consensus 49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 125 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS- 125 (376)
T ss_dssp HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCS--EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-
T ss_pred HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCC--EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-
Confidence 345555433232333356999999999999999988651 45555533666665544 33 222222223332
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+|++||+|++..+...+. +.-.+..++.+++|+|||||.+++.+.
T Consensus 126 ~~~~~D~Iv~~~~~~~l~-~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 126 LPEKVDVIISEWMGYFLL-RESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp CSSCEEEEEECCCBTTBT-TTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred cCCcceEEEEcChhhccc-chHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 458999999865444332 334677899999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-08 Score=100.33 Aligned_cols=129 Identities=17% Similarity=0.250 Sum_probs=77.3
Q ss_pred hhHHHhhhcchhhHhhhcCC-c-eEEEEeecCCC-CCceEEEeecc-----cccchhhhhhh--cccCCcchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-D-VWVMSVVPEDG-PNTLKLIYDRG-----LIGSIHNWCEA--YSTYPRTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~-~~v~~v~~~~~-~~~l~~~~~rg-----l~~~~~~~~e~--~~~~p~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++. + . .|+.+|. +.+++.+.++. +.-...+...+ +..++.+||+|.+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~--- 149 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKG---IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE--- 149 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTS---EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEE---
T ss_pred CEEEEEcccCCHHHHHHHHHcCCc---EEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEE---
Confidence 46999999999999999876 3 3 3555553 45554433321 10001111111 0123378999872
Q ss_pred hhhhhhcCCCc---ccchhhccccccCcceEEEe----cChh-------HHHHHHHhhhhcccccccccccCCCCCCCCC
Q 007128 530 FSDIEKRGCSG---EDLLLEMDRILRPTGFVIIR----DKQS-------VVDFVKKYLRALNWEAVATTADASSDSDKDG 595 (617)
Q Consensus 530 ~~~~~~~~c~~---~~~l~Em~RiLrPgG~~ii~----~~~~-------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 595 (617)
++. +. ..+|.++.|+|||||.+++. .... ..++++ ++...+++.+ ...+ .++. ..
T Consensus 150 --~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~-~~~~--~~~~-~~ 218 (230)
T 1fbn_A 150 --DVA----QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIV-DEVD--IEPF-EK 218 (230)
T ss_dssp --CCC----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEE-EEEE--CTTT-ST
T ss_pred --ecC----ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEE-EEEc--cCCC-cc
Confidence 121 23 56799999999999999994 1111 225677 7788888875 4444 3332 23
Q ss_pred CeEEEEEEec
Q 007128 596 DEVVFIVQKK 605 (617)
Q Consensus 596 ~~~~l~~~K~ 605 (617)
+-.+++++|+
T Consensus 219 ~~~~v~~~k~ 228 (230)
T 1fbn_A 219 DHVMFVGIWE 228 (230)
T ss_dssp TEEEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 4678888874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-09 Score=99.44 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred cchhhhhhhhhhhhh-hhcCCCcccchhhccccccCcceEEEecChhH----------HHHHHHhhhhcccccccccccC
Q 007128 519 RTYDLLHAWTVFSDI-EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSV----------VDFVKKYLRALNWEAVATTADA 587 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~-~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~----------~~~~~~~~~~~~w~~~~~~~~~ 587 (617)
++||+|+|..+++|+ . ++..+|.|+.|+|||||++++.++... .+++.+.++..++ . .+.+.
T Consensus 62 ~~fD~V~~~~~l~~~~~----~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i--~~~~~ 134 (176)
T 2ld4_A 62 SSFDIILSGLVPGSTTL----HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-V--EVKEL 134 (176)
T ss_dssp SCEEEEEECCSTTCCCC----CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-E--EEEEE
T ss_pred CCEeEEEECChhhhccc----CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-c--EeecC
Confidence 899999999999977 4 679999999999999999999765321 5778888888888 3 22211
Q ss_pred CC---CC----------CCC---CCeEEEEEEecccccCCC
Q 007128 588 SS---DS----------DKD---GDEVVFIVQKKIWLTSES 612 (617)
Q Consensus 588 ~~---~~----------~~~---~~~~~l~~~K~~w~~~~~ 612 (617)
.. .+ +.. ..-.+++|+|+-|...-|
T Consensus 135 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 135 QREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp EEECCCHHHHHHHHHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred cccCCCHHHHHHHHHHhcccCCceEEEEEeccCCcccccCC
Confidence 00 00 001 125688999988865544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.7e-09 Score=108.57 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=66.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+. ..|+.+|..++++.|.++ |+ +..++.-.+.++ +| ++||+|++..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccccc
Confidence 4699999999999999998865 134555543466666554 33 222222223332 45 8999999876544
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
++. +..++..++.+++|+|||||.++..
T Consensus 145 ~l~-~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLF-YESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBT-BTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccc-CchhHHHHHHHHHHhCCCCCEEccc
Confidence 442 3447788999999999999998743
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-08 Score=99.44 Aligned_cols=92 Identities=14% Similarity=0.306 Sum_probs=63.1
Q ss_pred hhhHHHhhhcchhhHhhhcC--CceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcc-cCCcchhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKE--KDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYS-TYPRTYDLLHA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~--~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~-~~p~tfDlvh~ 526 (617)
-.+|||+|||+|.++..|++ .+. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++ ..+.+||+|++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDI---HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34799999999999999998 444 5666664 5666666543 32 11222 2222233 33589999987
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
+.... +...++.++.|+|||||++++.
T Consensus 149 ~~~~~-------~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 149 DAAKA-------QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence 54332 4567999999999999999993
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-08 Score=109.67 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=82.0
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCC-CCCcccccccc-
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPY-PSRSFELAHCS- 285 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf-~~~sFDlV~~s- 285 (617)
++.+|||+|||+|..+..|++. .|+++|+++.++..++. .+...++ ++.+...|...++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~-n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA-NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 3478999999999998888763 48999999988877764 3444455 57777888877764 45789999862
Q ss_pred ----ccccccccc----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHh
Q 007128 286 ----RCRIDWLQR----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERM 340 (617)
Q Consensus 286 ----~~l~h~~~~----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~ 340 (617)
...+...++ ...+|.++.++|||||+|++++-...+...+ +.+..++++.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene-----~vv~~~l~~~ 265 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENE-----AVCLWLKETY 265 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTH-----HHHHHHHHHS
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCH-----HHHHHHHHHC
Confidence 111111111 1246888999999999999986554433322 2345555544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-08 Score=106.38 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=82.5
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---CcccccccccccCC----CCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRLPY----PSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~lpf----~~~sFDlV~~s 285 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++ ++.+..+|+..+.. ..++||+|++.
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 58999999999999999875 5899999998888777 34455566 57788888765421 14689999975
Q ss_pred cccc--------ccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 286 RCRI--------DWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 286 ~~l~--------h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
--.. +.......++.++.++|+|||+++++.......... ..+.+.+.+...|+
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDL---FQKIIADAAIDAGR 362 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHH---HHHHHHHHHHHHTC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH---HHHHHHHHHHHcCC
Confidence 3211 111222357788999999999999975443222111 11334445666654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=9.5e-09 Score=100.96 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=69.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-CCC----Cccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-YPS----RSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-f~~----~sFDlV 282 (617)
.+|||||||+|.++..+++. .|+++|+++.++..++. .....++ ++.+..+|+... + +++ ++||+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 58999999999998888763 58999999988877764 3334444 466766665432 1 211 689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
++... ......++.++.++|+|||++++..
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 97543 1222457889999999999999954
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.4e-09 Score=99.44 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=67.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccC-Ccchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTY-PRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~-p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..+++++.. .|+.+|. +.+++.|.++ |+ +-.++ |..+....+ +++||+|.++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 36999999999999988776542 4666664 5777666554 32 11222 222212223 3899999998777
Q ss_pred hhhhhcCCCcccchhhccc--cccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDR--ILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~R--iLrPgG~~ii~~~~ 563 (617)
.+.. .++..++.++.| +|||||.+++....
T Consensus 124 ~~~~---~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVDS---ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSCH---HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Ccch---hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 6431 156789999998 99999999998764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-08 Score=100.25 Aligned_cols=124 Identities=16% Similarity=0.062 Sum_probs=74.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEe----ecccc-cchhhhhh--hcccCCcchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIY----DRGLI-GSIHNWCE--AYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~----~rgl~-~~~~~~~e--~~~~~p~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..|++.-.--..|..+|. +.|++.+. +++.+ .+..+-+. ..+..+.++|+|++...++
T Consensus 80 ~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~- 158 (233)
T 4df3_A 80 RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP- 158 (233)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT-
T ss_pred EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCC-
Confidence 5999999999999999974111113455553 45554443 33322 22222221 1222238899887643222
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDK 593 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 593 (617)
. +...+|.|+.|+|||||.++|..... ...+..+.+...+++.+ +..+ .++++
T Consensus 159 -~----~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~-e~i~--L~pf~ 221 (233)
T 4df3_A 159 -E----QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIK-DVVH--LDPFD 221 (233)
T ss_dssp -T----HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEE-EEEE--CTTTS
T ss_pred -h----hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEE-EEEc--cCCCC
Confidence 2 45679999999999999999874322 33445556667788775 5554 56643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-08 Score=99.26 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=63.6
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC-----cchh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP-----RTYD 522 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p-----~tfD 522 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.++ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46999999999999999986 45 4556663 4666655544 32 11111 2222233333 7899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|+++.... +...++.++.|+|||||++++.+..
T Consensus 143 ~v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 143 LIYIDADKA-------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEECCCHH-------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998654332 3456899999999999999997764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-08 Score=100.01 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccC-----Ccch
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTY-----PRTY 521 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~-----p~tf 521 (617)
-++|||+|||+|..+..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.+ +.+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 357999999999999999873 44 4555563 6777776655 33 21222 221222323 4789
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+|+++.... +...++.++.|+|||||++++.+..
T Consensus 138 D~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 138 DFIFIDADKT-------NYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEEESCGG-------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred eEEEEcCChH-------HhHHHHHHHHHhcCCCeEEEEECCc
Confidence 9998765433 3456899999999999999996543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.6e-08 Score=98.51 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=74.9
Q ss_pred ceeEEEeeccccccccccccc-chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLS-SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~-~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+.+|||||||+|.++..+.. ..++++|+++.++..++ +.+...+.+..+.+.|....+++. +||+|++.-++++..
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar-~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE 182 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVIT-PFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLE 182 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHH-HHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHH
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhh
Confidence 346999999999999887663 47999999999888877 345556788888999988888664 899999776644332
Q ss_pred cccceEEEEecccccCCceeee
Q 007128 293 QRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 293 ~~~~~~L~el~RvLrPGG~lvi 314 (617)
........++.+.|+++|.++-
T Consensus 183 ~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 183 REQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHSTTHHHHHHHHCBCSEEEEE
T ss_pred hhchhhHHHHHHHhcCCCEEEE
Confidence 3323344488889999977664
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-08 Score=106.24 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=64.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
-.+|||+|||+|.++..+++.+.. .|+.+|...+++.|.++ |+ +-.++.-.+.++ +|..||+|.+..++.
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMGY 127 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCBT
T ss_pred cCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCchh
Confidence 346999999999999999887641 34444433465555443 33 222221112222 358899999988777
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|+.. .++...+.++.|+|||||.+++.
T Consensus 128 ~~~~--~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 128 MLFN--ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TBTT--TSHHHHHHHGGGGEEEEEEEESC
T ss_pred cCCh--HHHHHHHHHHHhhcCCCeEEEEe
Confidence 6541 24567888999999999999865
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-08 Score=107.79 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=75.8
Q ss_pred ceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCC----CCCccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPY----PSRSFELAHCSR 286 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf----~~~sFDlV~~s~ 286 (617)
++.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++. +.+..+|+..... .+++||+|++.-
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3578999999999999988864 69999999988887774 44444553 7778888765432 256899999753
Q ss_pred ccc--------ccccccceEEEEecccccCCceeeecChhh
Q 007128 287 CRI--------DWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 287 ~l~--------h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
-.+ ........++.++.++|+|||++++++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 211 111222457888999999999999976543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-08 Score=110.17 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=84.4
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC-CCCCccccccccc--
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP-YPSRSFELAHCSR-- 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp-f~~~sFDlV~~s~-- 286 (617)
.+|||+|||+|..+..|++. .|+++|+++..+..++. .+...|+ ++.+...|...++ ..+++||+|++.-
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~-n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSE-NIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH-HHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 68999999999988888764 48999999988777763 4444455 4667777877665 3457899998631
Q ss_pred ---cccc--------ccc--------ccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 007128 287 ---CRID--------WLQ--------RDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 287 ---~l~h--------~~~--------~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..+. |.. ....+|.++.++|||||+|++++-...+...+ +.+..++++.+|+++.
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne-----~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENE-----EIISWLVENYPVTIEE 259 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHSSEEEEC
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCH-----HHHHHHHHhCCCEEEe
Confidence 1111 100 01157889999999999999875444332222 4567777777765543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-08 Score=101.49 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=85.7
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------c----ccchh-hhhhhccc-CCcchhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------L----IGSIH-NWCEAYST-YPRTYDLL 524 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------l----~~~~~-~~~e~~~~-~p~tfDlv 524 (617)
-.+|||+|||.|+++..|++. ++ ..|+.+|. +.+++.+.++- + +-.+. |..+-... -+++||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 357999999999999999976 22 24566664 46666555432 1 11111 21111111 14899999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh-----hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEE
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 599 (617)
.++...........--..++.++.|+|||||.+++.... ....++.+.+++.++..+ ..........+.+.-.+
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v-~~~~~~vP~yp~g~w~f 252 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASV-QYALMHVPTYPCGSIGT 252 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEE-EEEECCCTTSTTSCCEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcE-EEEEeecccccCcceEE
Confidence 986555422111001157899999999999999996543 355667777777778754 33321122233456678
Q ss_pred EEEEec
Q 007128 600 FIVQKK 605 (617)
Q Consensus 600 l~~~K~ 605 (617)
++|.|+
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 889885
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-08 Score=109.17 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=75.4
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCC----CCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPY----PSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf----~~~sFDlV~~s~ 286 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++ ++.+..+|+..+.. .+++||+|++.-
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 68999999999999999865 58999999988887774 4445555 57788888765431 256899999753
Q ss_pred ccc--------ccccccceEEEEecccccCCceeeecChhh
Q 007128 287 CRI--------DWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 287 ~l~--------h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
-.. +.......++.++.++|+|||++++++...
T Consensus 298 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 211 111223457889999999999998875443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-08 Score=99.60 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=69.9
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-C-----CCCcccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-Y-----PSRSFEL 281 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-f-----~~~sFDl 281 (617)
.+|||||||+|..+..+++. .|+++|+++.++..++. ...+.++ .+.+..+|+... + + ++++||+
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP-FIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 58999999999988888753 58999999988777763 3334455 356666776442 2 2 2578999
Q ss_pred ccccccccccccccceEEEEecccccCCceeeecC
Q 007128 282 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 282 V~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
|++... ......+++++.++|||||++++..
T Consensus 151 I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 986532 2233468889999999999999864
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.8e-08 Score=99.13 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=58.8
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhC-CCcccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERG-IPAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg-~~~~~~~~d~ 269 (617)
...+.+.+.+.. .. +.+|||||||+|.++..|++. .|+++|+++.++..++.+.. ..+ .++.+..+|+
T Consensus 29 ~i~~~i~~~~~~------~~--~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~ 99 (299)
T 2h1r_A 29 GILDKIIYAAKI------KS--SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDA 99 (299)
T ss_dssp HHHHHHHHHHCC------CT--TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----C
T ss_pred HHHHHHHHhcCC------CC--cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECch
Confidence 345566666654 33 368999999999999999876 59999999988877764333 333 3577888888
Q ss_pred cccCCCCCcccccccccc
Q 007128 270 KRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~ 287 (617)
..++++ +||+|+++..
T Consensus 100 ~~~~~~--~~D~Vv~n~p 115 (299)
T 2h1r_A 100 IKTVFP--KFDVCTANIP 115 (299)
T ss_dssp CSSCCC--CCSEEEEECC
T ss_pred hhCCcc--cCCEEEEcCC
Confidence 887764 7999998643
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-08 Score=105.54 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..+++.+. ..|+.+|..++++.|.++ |+ +-.++.-.+.++ +| ++||+|.+..+..
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMGY 142 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCBT
T ss_pred CEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCchh
Confidence 4699999999999999998864 135555543476666543 32 222222122332 45 8999999866322
Q ss_pred hhhhcCCCcccchhhccccccCcceEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.+. +.-++..+|.++.|+|||||.++
T Consensus 143 ~l~-~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLL-FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBT-TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcc-CHHHHHHHHHHHHhhcCCCcEEE
Confidence 221 22356779999999999999998
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-08 Score=100.59 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=78.8
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCc----eEEEeec-ccccchhhhhhh--cccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNT----LKLIYDR-GLIGSIHNWCEA--YSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~----l~~~~~r-gl~~~~~~~~e~--~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|+++..|++. .. .|..+|. +.| ++.+.+| ++.....|-..+ +...+.+||+|.++.
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 46999999999999998864 23 3555553 333 3333333 222222222211 112247899999875
Q ss_pred hhhhhhhcCCCcccchh-hccccccCcceEEEecCh----------hHHHHHHHhhhhcccccccccccCCCCCCCCCCe
Q 007128 529 VFSDIEKRGCSGEDLLL-EMDRILRPTGFVIIRDKQ----------SVVDFVKKYLRALNWEAVATTADASSDSDKDGDE 597 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~-Em~RiLrPgG~~ii~~~~----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 597 (617)
.+. +...+|. .+.|+|||||.|++.-.. ++.+++...+++-+++.+ ...+ .+|. ..+.
T Consensus 155 a~~-------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~-~~~~--l~p~-~~~h 223 (232)
T 3id6_C 155 AQP-------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETI-QIIN--LDPY-DKDH 223 (232)
T ss_dssp CCT-------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEE-EEEE--CTTT-CSSC
T ss_pred CCh-------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEE-EEec--cCCC-cCce
Confidence 543 4444554 556699999999987321 122345555666677776 4554 6665 3467
Q ss_pred EEEEEEecc
Q 007128 598 VVFIVQKKI 606 (617)
Q Consensus 598 ~~l~~~K~~ 606 (617)
.+++++|++
T Consensus 224 ~~v~~~~~~ 232 (232)
T 3id6_C 224 AIVLSKYKG 232 (232)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEeCC
Confidence 888888863
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-08 Score=97.04 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=77.6
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CC----ceEEEeec-ccccchhhhhh--hcccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PN----TLKLIYDR-GLIGSIHNWCE--AYSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~----~l~~~~~r-gl~~~~~~~~e--~~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +. +++.+..+ ++.-...+..+ .++..+.+||+|.++.
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~---~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDG---LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 46999999999999999876 24 3455553 22 33333332 22111112211 1222247999999844
Q ss_pred hhhhhhhcCCCc-ccchhhccccccCcceEEEecChhH----------HHHHHHhhhhcccccccccccCCCCCCCCCCe
Q 007128 529 VFSDIEKRGCSG-EDLLLEMDRILRPTGFVIIRDKQSV----------VDFVKKYLRALNWEAVATTADASSDSDKDGDE 597 (617)
Q Consensus 529 ~~~~~~~~~c~~-~~~l~Em~RiLrPgG~~ii~~~~~~----------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 597 (617)
.. .+. ..++.++.|+|||||.+++.-.... ..+-.+++...+|+.+ ...+ .++.+ .+.
T Consensus 156 ~~-------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~--~~~~~-~~~ 224 (233)
T 2ipx_A 156 AQ-------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQ-EQLT--LEPYE-RDH 224 (233)
T ss_dssp CC-------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEE-EEEE--CTTTS-SSE
T ss_pred CC-------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceE-EEEe--cCCcc-CCc
Confidence 31 122 3457789999999999999655421 2222477888899886 4333 33332 345
Q ss_pred EEEEEEec
Q 007128 598 VVFIVQKK 605 (617)
Q Consensus 598 ~~l~~~K~ 605 (617)
.+++++|+
T Consensus 225 ~~v~~~~~ 232 (233)
T 2ipx_A 225 AVVVGVYR 232 (233)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 67777763
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-08 Score=105.49 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=64.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhcccCC-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYSTYP-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~~p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..+++.+.. .|+.+|..++++.|.++ |+ +-.++.-.+.++ +| ++||+|++..+..
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 46999999999999999987641 35555543466655544 33 222222222332 45 8999999875544
Q ss_pred hhhhcCCCcccchhhccccccCcceEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
++. +.-.+..++.+++|+|||||.+++
T Consensus 117 ~l~-~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLL-YESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBS-TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcc-cHHHHHHHHHHHHhhcCCCeEEEE
Confidence 332 334677899999999999999973
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-08 Score=99.77 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=65.6
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC-----cch
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP-----RTY 521 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p-----~tf 521 (617)
-++|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.++ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 457999999999999999874 45 4566664 5677666553 33 22222 2223344444 699
Q ss_pred hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 522 DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+|+++....+.. +...++.++ |+|||||.+++.+..
T Consensus 136 D~V~~d~~~~~~~----~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYL----PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHH----HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccch----HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999877665443 234567778 999999999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-08 Score=95.19 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=65.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchh-hhhhhcccCC---cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIH-NWCEAYSTYP---RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~-~~~e~~~~~p---~tfDlvh~~~~~ 530 (617)
+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.++ +..+..+.++ .+||+|.++..|
T Consensus 44 ~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred eEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 699999999999999998876 3777775 5777666553 21 11111 2222122222 389999998776
Q ss_pred hhhhhcCCCcccchhhcc--ccccCcceEEEecChh
Q 007128 531 SDIEKRGCSGEDLLLEMD--RILRPTGFVIIRDKQS 564 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~--RiLrPgG~~ii~~~~~ 564 (617)
. . +.+.++.++. |+|||||.+++.....
T Consensus 121 ~--~----~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 121 A--M----DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp T--S----CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred c--h----hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 5 2 4566777777 9999999999987653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-07 Score=99.62 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=85.8
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~ 266 (617)
....+.+.+.+.. ..+ .+|||+|||+|.++..++++ .++|+|+++.++..+ ..+.+..
T Consensus 25 ~~l~~~~~~~~~~------~~~--~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~ 87 (421)
T 2ih2_A 25 PEVVDFMVSLAEA------PRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGIL 87 (421)
T ss_dssp HHHHHHHHHHCCC------CTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEE
T ss_pred HHHHHHHHHhhcc------CCC--CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEe
Confidence 3455666666643 222 48999999999999888753 589999999877665 2456667
Q ss_pred ccccccCCCCCccccccccccccccc----------ccc------------------ceEEEEecccccCCceeeecChh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWL----------QRD------------------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~----------~~~------------------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+|+...+. +++||+|+++--..... .+. ..++..+.++|+|||++++..|.
T Consensus 88 ~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 88 ADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 77776553 46899999852211100 100 13577899999999999998876
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 319 AYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 319 ~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
....... .+.+.+.+.+.++
T Consensus 167 ~~l~~~~----~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 167 TWLVLED----FALLREFLAREGK 186 (421)
T ss_dssp GGGTCGG----GHHHHHHHHHHSE
T ss_pred HHhcCcc----HHHHHHHHHhcCC
Confidence 5433222 2456666766665
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-08 Score=98.34 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=72.6
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec-----cc--ccchh-hhhhhcccCC-cchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR-----GL--IGSIH-NWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r-----gl--~~~~~-~~~e~~~~~p-~tfDlvh~ 526 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ |. +-..+ +..+ ++ ++ ++||+|.+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~-~~~~~~D~v~~ 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE-AE-LEEAAYDGVAL 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG-CC-CCTTCEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh-cC-CCCCCcCEEEE
Confidence 47999999999999999876 44 4555553 5666665554 31 11111 2221 11 34 78999987
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhccccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEA 580 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~ 580 (617)
+ .. +...+|.++.|+|||||.+++..+.. ...++.+.+...+|..
T Consensus 173 ~-----~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 173 D-----LM----EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp E-----SS----CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred C-----Cc----CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 2 22 56789999999999999999988765 5556666666666654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-08 Score=96.64 Aligned_cols=118 Identities=8% Similarity=0.128 Sum_probs=71.3
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhccc-CC-cchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYST-YP-RTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~-~p-~tfDlvh~~ 527 (617)
..|||+|||+|.++..|++. +. +|+.+|. +++++.|.++ |+ +-.+. |-.+-++. ++ ++||.|+++
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 35999999999999999865 34 5666674 5666665444 33 11111 21111221 33 999999875
Q ss_pred hhhhhhh----hcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhc-cccc
Q 007128 528 TVFSDIE----KRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRAL-NWEA 580 (617)
Q Consensus 528 ~~~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~-~w~~ 580 (617)
...+... ..+-.-..++.++.|+|||||.|++... ....+.+..++... .|+.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 3222110 0111112589999999999999988655 44556666665543 4554
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-08 Score=95.82 Aligned_cols=129 Identities=15% Similarity=0.260 Sum_probs=73.8
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEee----c-cc---ccchhhhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYD----R-GL---IGSIHNWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~----r-gl---~~~~~~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++. +.. |+.+|. +.+++.+.+ + ++ .+.+.+. ..+...+.+||+|.++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~---v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGK---IFGIEFSPRVLRELVPIVEERRNIVPILGDATKP-EEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG-GGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeE---EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCc-chhhcccCCceEEEEC
Confidence 46999999999999999865 243 344442 333222211 1 11 1222111 0112234789999975
Q ss_pred hhhhhhhhcCCCcc-cchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCC
Q 007128 528 TVFSDIEKRGCSGE-DLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDG 595 (617)
Q Consensus 528 ~~~~~~~~~~c~~~-~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 595 (617)
.... +.. .++.++.|+|||||++++.-... ..++++.+ ... ++.+ ...+ .++. ..
T Consensus 151 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~-~~~~--~~~~-~~ 217 (227)
T 1g8a_A 151 VAQP-------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVI-ERLN--LEPY-EK 217 (227)
T ss_dssp CCST-------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEE-EEEE--CTTT-SS
T ss_pred CCCH-------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceee-eEec--cCcc-cC
Confidence 4311 222 44999999999999999852221 12456666 444 8776 4443 3332 23
Q ss_pred CeEEEEEEec
Q 007128 596 DEVVFIVQKK 605 (617)
Q Consensus 596 ~~~~l~~~K~ 605 (617)
...+++++|+
T Consensus 218 ~~~~~~~~~~ 227 (227)
T 1g8a_A 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred CCEEEEEEeC
Confidence 5678888874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.6e-08 Score=94.60 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=62.7
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC----cchhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP----RTYDL 523 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p----~tfDl 523 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.++ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 46999999999999999987 55 4566663 5666655443 33 11111 2222222222 57999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+++.... ....++.++.|+|||||++++.+..
T Consensus 137 v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98765544 3357899999999999999987654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-08 Score=104.57 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=64.6
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec-ccccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
....+|||+|||+|.++..|+++ ++.+ +.+|.+.+++.+.+. ++--..+|..+ .+|. ||+|++..+++|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKG---INFDLPQVIENAPPLSGIEHVGGDMFA---SVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHTTCCCCTTEEEEECCTTT---CCCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeE---EEeChHHHHHhhhhcCCCEEEeCCccc---CCCC-CCEEEEecccccC
Confidence 44568999999999999999875 3433 333334454444432 22111223222 2455 9999999999977
Q ss_pred hhcCCCcccchhhccccccCcceEEEec
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
... ....+|.++.|+|||||+++|.|
T Consensus 281 ~d~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 622 12389999999999999999985
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-08 Score=112.93 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=70.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----------cc--ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----------GL--IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----------gl--~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
.+|||+|||+|.++..|++.+.....|+.+|. +.|++.|.+| |+ +-.++.-.+.++..+++||+|+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~ 802 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTC 802 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEE
Confidence 46999999999999999998621125667774 6788877662 32 22222111223322389999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
..++.|+... ....++.|+.|+|||| .++|..+.
T Consensus 803 ~eVLeHL~dp--~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 803 LEVIEHMEED--QACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred eCchhhCChH--HHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999998632 2346899999999999 88887654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-07 Score=100.00 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=83.0
Q ss_pred ceeEEEeeccccccccccccc---------chhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLS---------SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHC 284 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~---------~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~ 284 (617)
+..+|||+|||+|.++..+++ ..++|+|+++.++..++... ...++++.+..+|+... .+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~-~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA-DLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH-HhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 457999999999998877754 34789999988777776433 33466777777776553 34578999998
Q ss_pred ccccccccccc-----------------ceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhh
Q 007128 285 SRCRIDWLQRD-----------------GILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCW 342 (617)
Q Consensus 285 s~~l~h~~~~~-----------------~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf 342 (617)
+-.+..+..+. ..++.++.+.|+|||++++..|........ ...+.+.+.+.++
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~----~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNGH 278 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch----HHHHHHHHHhCCe
Confidence 75432221110 136788899999999999988765322221 1456666666555
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-07 Score=95.46 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=55.8
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. . ++.+|||||||+|.++..|+++ .|+++|+++.++..++..... ..++.+..+|+.
T Consensus 17 ~~~~~i~~~~~~------~--~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~ 86 (244)
T 1qam_A 17 HNIDKIMTNIRL------N--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDIL 86 (244)
T ss_dssp HHHHHHHTTCCC------C--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGG
T ss_pred HHHHHHHHhCCC------C--CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHH
Confidence 344555555543 2 2368999999999999999876 589999998777665533221 235788889999
Q ss_pred ccCCCC-Cccccc
Q 007128 271 RLPYPS-RSFELA 282 (617)
Q Consensus 271 ~lpf~~-~sFDlV 282 (617)
.+++++ ..|++|
T Consensus 87 ~~~~~~~~~~~vv 99 (244)
T 1qam_A 87 QFKFPKNQSYKIF 99 (244)
T ss_dssp GCCCCSSCCCEEE
T ss_pred hCCcccCCCeEEE
Confidence 998874 456433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.3e-08 Score=110.50 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=75.9
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC---cccccccccc-cCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTKR-LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~~-lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..++.. .|+++|+++.++..++. .+...++. +.+.++|+.. ++...++||+|++.--.
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~-N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAER-NLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 58999999999999888764 48999999998888874 44445553 7788888765 44456789999975321
Q ss_pred ----------cccccccceEEEEecccccCCceeeecChhh
Q 007128 289 ----------IDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 289 ----------~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
.+.......++.++.++|+|||+|+++....
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 1122223446888999999999999876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-08 Score=97.53 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=66.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc----ccchh-hhhhhcccC-Ccc-hhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL----IGSIH-NWCEAYSTY-PRT-YDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~-~~~e~~~~~-p~t-fDlvh~~~ 528 (617)
+|||+|||+|.++..++.++. ..|+.+|. +.+++.|.++ |+ +-.+. |..+..+.. +++ ||+|.++.
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 699999999999998776654 25777774 5777777654 22 11111 221112222 378 99999876
Q ss_pred hhhhhhhcCCCcccchhhc--cccccCcceEEEecChhH
Q 007128 529 VFSDIEKRGCSGEDLLLEM--DRILRPTGFVIIRDKQSV 565 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em--~RiLrPgG~~ii~~~~~~ 565 (617)
.|. . -+...++.++ .|+|||||.+++......
T Consensus 134 ~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 134 PFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 654 1 1456788888 889999999999877644
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-08 Score=100.65 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=61.9
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEK 535 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~ 535 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.+++- +..+..-.+.++.-+++||+|.+..+
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~------ 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------ 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC------
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC------
Confidence 36999999999999999886 55 4555563 577777766642 11111111222311289999997332
Q ss_pred cCCCcccchhhccccccCcceEEEecChh
Q 007128 536 RGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 536 ~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
...+.|+.|+|||||.+++..+..
T Consensus 158 -----~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 -----PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 347999999999999999987653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-08 Score=97.54 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=79.4
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccc----cchh-hhhhhcccC-Ccchhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLI----GSIH-NWCEAYSTY-PRTYDLLHA 526 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~----~~~~-~~~e~~~~~-p~tfDlvh~ 526 (617)
+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+- -.++ +..+.++.+ +++||+|.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 7999999999999999863 44 4566664 5666655443 321 1111 122223445 489999987
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------HHHHHHHhhhhccccc-cc-ccccCCCCCC
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------VVDFVKKYLRALNWEA-VA-TTADASSDSD 592 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------~~~~~~~~~~~~~w~~-~~-~~~~~~~~~~ 592 (617)
+.... +....+.++.|+|||||.+++.+..- ....++++.+.+.+.. +. .+..
T Consensus 136 d~~~~-------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp------ 202 (221)
T 3dr5_A 136 QVSPM-------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP------ 202 (221)
T ss_dssp CCCTT-------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES------
T ss_pred cCcHH-------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee------
Confidence 54333 44568999999999999999965432 1223555555555543 10 1221
Q ss_pred CCCCeEEEEEEecc
Q 007128 593 KDGDEVVFIVQKKI 606 (617)
Q Consensus 593 ~~~~~~~l~~~K~~ 606 (617)
-...+++++|.+
T Consensus 203 --~gdGl~~~~~~~ 214 (221)
T 3dr5_A 203 --LGAGLTVVTKAL 214 (221)
T ss_dssp --STTCEEEEEECC
T ss_pred --ccchHHHHHHHH
Confidence 235688898865
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-08 Score=93.91 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=65.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccch-hhhhhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSI-HNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~-~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
.+|||+|||+|.++..|++++. ..|+.+|. +.+++.+.++ |+ +-.+ .++.+.++..+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 3699999999999999998753 25777774 5676666543 22 1111 13333233345789999997666
Q ss_pred hhhhhcCCCcccchhhcc--ccccCcceEEEecChh
Q 007128 531 SDIEKRGCSGEDLLLEMD--RILRPTGFVIIRDKQS 564 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~--RiLrPgG~~ii~~~~~ 564 (617)
... ..+.++.++. |+|||||.+++.....
T Consensus 111 ~~~-----~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 111 AKE-----TIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHH-----HHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred Ccc-----hHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 421 2355666665 9999999999987654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-08 Score=102.38 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=65.1
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec-ccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
...+|||+|||+|.++..|+++ +.. ++.+|.+.+++.+.+. ++--..+|..+ .+|. ||+|.+..+++|+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLK---CIVFDRPQVVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCe---EEEeeCHHHHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhhccCC
Confidence 4467999999999999999865 343 3334434555544432 22111223222 2444 99999999999876
Q ss_pred hcCCCcccchhhccccccC---cceEEEecC
Q 007128 535 KRGCSGEDLLLEMDRILRP---TGFVIIRDK 562 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrP---gG~~ii~~~ 562 (617)
.. +...+|.++.|+||| ||+++|.|.
T Consensus 261 d~--~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DK--DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HH--HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HH--HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 22 123899999999999 999999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.1e-08 Score=96.99 Aligned_cols=93 Identities=12% Similarity=0.207 Sum_probs=64.9
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccC--Ccchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTY--PRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~--p~tfDlvh~ 526 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +..++ +..+.++.. +++||+|.+
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 47999999999999999875 44 5666664 5666666555 33 11111 222212222 478999998
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+...+ +...+|.++.|+|||||.+++.+.
T Consensus 133 ~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAKG-------QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGGS-------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCHH-------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 66654 567899999999999999999753
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-07 Score=94.55 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=74.8
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcc-cCC-cchhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYS-TYP-RTYDLLHAWTV 529 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~-~~p-~tfDlvh~~~~ 529 (617)
.+|||+|||+|.++..|++. +. +|+.+|. +.+++.|.++ |+...+...+.++. .++ ++||+|.++
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~-- 188 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD-- 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC--
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC--
Confidence 36999999999999999876 34 5666674 5666666554 33111111111111 134 789999872
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccc
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~ 581 (617)
. .+...+|.++.|+|||||.+++..+. ....++.+.+...+|..+
T Consensus 189 ---~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 189 ---V----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234 (277)
T ss_dssp ---C----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEE
T ss_pred ---C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 2 25568999999999999999998874 356667777777777643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-07 Score=96.03 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=71.9
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||+|||+|.++.. +.. .|+++|+++.++..++ +.+...++ ++.+..+|+.... ++||+|++..- ..
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP--~~ 269 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP--KF 269 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT--TT
T ss_pred CEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc--Hh
Confidence 6899999999999888 654 5899999998888777 44444555 4778888887765 78999997521 11
Q ss_pred ccccceEEEEecccccCCceeeecChhh
Q 007128 292 LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 292 ~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...++.++.++|+|||++++.....
T Consensus 270 ---~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 270 ---AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 1357888999999999999875444
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-08 Score=100.94 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=68.6
Q ss_pred hhHHHhhhcchh----hHhhhcCC-c----eEEEEeecCCC-CCceEEEeecc---------------------------
Q 007128 460 RNLMDMKAHLGS----FAAALKEK-D----VWVMSVVPEDG-PNTLKLIYDRG--------------------------- 502 (617)
Q Consensus 460 r~vLD~g~G~G~----fa~~L~~~-~----~~v~~v~~~~~-~~~l~~~~~rg--------------------------- 502 (617)
.+|+|+|||+|- +|..|++. + -+ .|+++|. ++||+.|.+.-
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 369999999997 66666653 2 12 6788884 68877765421
Q ss_pred -----------cccchhhhhhhcccCC--cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 503 -----------LIGSIHNWCEAYSTYP--RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 503 -----------l~~~~~~~~e~~~~~p--~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+.-..|++.++ .|| +.||+|.|..|+.|+... ....++.++.+.|||||++++-+...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~--~~~~~~~fDlI~crnvliyf~~~--~~~~vl~~~~~~L~pgG~L~lg~sE~ 255 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKT--TQEDILRRFVPLLKPDGLLFAGHSEN 255 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHH--HHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred ceeechhhcccCeEEecccCCC--CCCcCCCeeEEEECCchHhCCHH--HHHHHHHHHHHHhCCCcEEEEEeccc
Confidence 00012333331 233 789999999999887522 34689999999999999999976653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-07 Score=100.40 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec-ccccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR-GLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r-gl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
...+|||+|||+|.++..|+++ ++.+ +.+|.+.+++.+.+. ++--..+|..+ .+| .||+|.+..+++|+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~-~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKC---TVFDQPQVVGNLTGNENLNFVGGDMFK---SIP-SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEE---EEEECHHHHSSCCCCSSEEEEECCTTT---CCC-CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeE---EEeccHHHHhhcccCCCcEEEeCccCC---CCC-CceEEEEcccccCCC
Confidence 4467999999999999999875 3333 333334455444331 22111223322 244 499999999999776
Q ss_pred hcCCCcccchhhccccccC---cceEEEecChh-----------------------------HHHHHHHhhhhcccccc
Q 007128 535 KRGCSGEDLLLEMDRILRP---TGFVIIRDKQS-----------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrP---gG~~ii~~~~~-----------------------------~~~~~~~~~~~~~w~~~ 581 (617)
.. +...+|.++.|+||| ||+++|.|..- ..++++++++..+++.+
T Consensus 266 d~--~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 342 (358)
T 1zg3_A 266 DE--QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY 342 (358)
T ss_dssp HH--HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred HH--HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 32 124899999999999 99999975320 13357778888888875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.3e-07 Score=96.92 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=68.2
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc----cCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR----LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~----lpf~~~sFDlV~~s~~l 288 (617)
.+|||+|||+|.++..|++. .|+|+|+++.++..++. .+...++ ++.+..+|+.. +++++++||+|++.--.
T Consensus 288 ~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr 366 (433)
T 1uwv_A 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 (433)
T ss_dssp CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred CEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC
Confidence 58999999999999999875 69999999998888874 4444555 57888888766 45667789999864221
Q ss_pred cccccccceEEEEecccccCCceeeecCh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
. .. ..++..+ ..++|+++++++..
T Consensus 367 ~---g~-~~~~~~l-~~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 367 A---GA-AGVMQQI-IKLEPIRIVYVSCN 390 (433)
T ss_dssp T---CC-HHHHHHH-HHHCCSEEEEEESC
T ss_pred c---cH-HHHHHHH-HhcCCCeEEEEECC
Confidence 1 00 1122222 23689999988753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-07 Score=97.70 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=70.2
Q ss_pred eeEEEeecc------cccc-ccccccc--chhhhhccCCCccchhhhHHHHHhCCCccc-ccccccccCCCCCccccccc
Q 007128 215 LRTVLDVGC------GVAS-FGAYLLS--SDVITMSLAPNDVHQNQIQFALERGIPAYL-GVLGTKRLPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGC------G~G~-~~~~L~~--~~V~gvDis~~dl~~a~~~~a~~rg~~~~~-~~~d~~~lpf~~~sFDlV~~ 284 (617)
+.+|||+|| |+|+ .+..+.. ..|+++|+++. + .++.+ .++|+..++++ ++||+|+|
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~Vvs 129 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLIIS 129 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEEEE
Confidence 368999999 4465 2222222 35999999985 1 14667 88898888765 68999997
Q ss_pred cccccccc-----cc------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 285 SRCRIDWL-----QR------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 285 s~~l~h~~-----~~------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
+.. .++. +. ...+++++.|+|||||.|++..+.... .+++.++++..||..
T Consensus 130 n~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--------~~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 130 DMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--------NADLYKLMGHFSWWT 191 (290)
T ss_dssp CCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--------CHHHHHHHTTEEEEE
T ss_pred cCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--------HHHHHHHHHHcCCcE
Confidence 532 2211 11 014788899999999999996543321 135666777777743
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.8e-08 Score=93.40 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=62.2
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 46999999999999999876 44 4555553 5666655543 32 11222 22222344457 9999875
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. ..+...++.++.|+|||||.+++.+.
T Consensus 134 ~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 134 CD-------VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp TT-------TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred CC-------hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 22 22567899999999999999999653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.6e-07 Score=91.61 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=65.7
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. ..+ .+|||||||+|.++..|++. .|+++|+++.++..++.... ...++.+..+|+.
T Consensus 37 ~i~~~Iv~~l~~------~~~--~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 37 NFVNKAVESANL------TKD--DVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp HHHHHHHHHTTC------CTT--CEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred HHHHHHHHhcCC------CCc--CEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 455667777665 333 68999999999999999875 59999999988877764443 2346788899999
Q ss_pred ccCCCCCccccccccc
Q 007128 271 RLPYPSRSFELAHCSR 286 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~ 286 (617)
.+++++.+||+|+++.
T Consensus 107 ~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 107 KVDLNKLDFNKVVANL 122 (295)
T ss_dssp TSCGGGSCCSEEEEEC
T ss_pred hCCcccCCccEEEEeC
Confidence 9998888899999764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.2e-07 Score=98.69 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=69.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..|++. .|+++|+++.++..++. .+...++++.+..+|+..+... +||+|++.... ..
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~-n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr---~g 365 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARR-NVEINNVDAEFEVASDREVSVK--GFDTVIVDPPR---AG 365 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCT---TC
T ss_pred CEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCc---cc
Confidence 58999999999999999875 59999999998888874 4455566677888888776432 89999975321 11
Q ss_pred ccceEEEEecccccCCceeeecChh
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
....++..+ +.|+|||+++++..+
T Consensus 366 ~~~~~~~~l-~~l~p~givyvsc~p 389 (425)
T 2jjq_A 366 LHPRLVKRL-NREKPGVIVYVSCNP 389 (425)
T ss_dssp SCHHHHHHH-HHHCCSEEEEEESCH
T ss_pred hHHHHHHHH-HhcCCCcEEEEECCh
Confidence 111233333 458999999998643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-08 Score=94.65 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=62.7
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
-.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++ |+ +-.++ +..+... -+.+||+|.++.++
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAAP 153 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSBC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccch
Confidence 34799999999999999998765 5556663 5666666554 22 11111 2222111 13799999998877
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+++. .++.|+|||||++++..+.
T Consensus 154 ~~~~----------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIP----------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCC----------THHHHTEEEEEEEEEEECS
T ss_pred hhhh----------HHHHHhcccCcEEEEEEcC
Confidence 7543 3788999999999998765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-08 Score=95.80 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=62.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccch-hhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSI-HNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~-~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.- +-.+ .+..+.++ .+++||+|++..++.|+
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence 3799999999999999998764 5666663 566666655521 1111 12222111 13789999998887754
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
..++.|+|||||.+++.....
T Consensus 148 ----------~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 148 ----------LCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp ----------CHHHHHTEEEEEEEEEEECSS
T ss_pred ----------HHHHHHHcCCCcEEEEEEcCC
Confidence 247899999999999987653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-07 Score=98.97 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=66.6
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeeccccc-chhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLIG-SIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~~-~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
......|||+|||+|.++..|+++ ++. ++.+|.+.+++.+.++.-+. ..+|..++ +|.. |+|++..++++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---~p~~-D~v~~~~vlh~ 271 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDLPHVISEAPQFPGVTHVGGDMFKE---VPSG-DTILMKWILHD 271 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecCHHHHHhhhhcCCeEEEeCCcCCC---CCCC-CEEEehHHhcc
Confidence 455678999999999999999864 343 33334345555444432111 22233233 4544 99999999987
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.... +...+|.++.|+|||||+|+|.|.
T Consensus 272 ~~d~--~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 272 WSDQ--HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp SCHH--HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCHH--HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 6422 346899999999999999999764
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-08 Score=96.15 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=65.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec------------cc--ccchh-hhhhhccc-CC-cch
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR------------GL--IGSIH-NWCEAYST-YP-RTY 521 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r------------gl--~~~~~-~~~e~~~~-~p-~tf 521 (617)
..|||+|||+|.|+..|+..+-- .+|+.+|. +.+++.+.++ |+ +-.+. |..+.++. ++ .+|
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 36999999999999999876310 15666663 4565555432 33 11111 11111221 33 778
Q ss_pred hhhhhhhhhhhhh------hcCCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhc
Q 007128 522 DLLHAWTVFSDIE------KRGCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRAL 576 (617)
Q Consensus 522 Dlvh~~~~~~~~~------~~~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~ 576 (617)
|.|... |+.-+ ..+--...++.++.|+|||||.|++. +.....+.+.+.+...
T Consensus 130 d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 189 (246)
T 2vdv_E 130 SKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189 (246)
T ss_dssp EEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred CEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence 877632 22100 00111147999999999999999884 5555555555555443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.4e-08 Score=93.11 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=65.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..++.++.. .|+.+|. +.+++.|.++ |+ +-.++ |..+..+..+.+||+|.++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 36999999999999987776542 5777774 6777776554 22 22222 22221232237999999876644
Q ss_pred hhhhcCCCcccchhhcc--ccccCcceEEEecChh
Q 007128 532 DIEKRGCSGEDLLLEMD--RILRPTGFVIIRDKQS 564 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~--RiLrPgG~~ii~~~~~ 564 (617)
.. +...++.++. |+|||||.+++.....
T Consensus 134 -~~----~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 -RG----LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp -TT----THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred -CC----cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 11 4566778885 5799999999987753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-07 Score=95.77 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=85.9
Q ss_pred hHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCCcch---hhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYPRTY---DLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p~tf---Dlvh~~ 527 (617)
+|||+|||+|.++..|+.. +. +|+.+|. +.+++.|.++ |+ +-.++ ++.+. .+.+| |+|.++
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILSN 199 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEEC
T ss_pred EEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEEc
Confidence 6999999999999999876 44 5666674 5777766554 33 22222 34333 23689 999885
Q ss_pred hhhh-----------hhh----hcCCCcccchhhcc-ccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCCCC
Q 007128 528 TVFS-----------DIE----KRGCSGEDLLLEMD-RILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASSDS 591 (617)
Q Consensus 528 ~~~~-----------~~~----~~~c~~~~~l~Em~-RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 591 (617)
--+. |-. ...++-..++.++. +.|+|||++++.......+.+.+++... +. ..| .
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~---~~D--~-- 270 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VF---LKD--S-- 270 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EE---EEC--T--
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--Ce---ecc--c--
Confidence 1110 000 02234457899999 9999999999988887777888888775 32 333 2
Q ss_pred CCCCCeEEEEEEec
Q 007128 592 DKDGDEVVFIVQKK 605 (617)
Q Consensus 592 ~~~~~~~~l~~~K~ 605 (617)
.+.+++++++++
T Consensus 271 --~g~~R~~~~~~k 282 (284)
T 1nv8_A 271 --AGKYRFLLLNRR 282 (284)
T ss_dssp --TSSEEEEEEECC
T ss_pred --CCCceEEEEEEc
Confidence 456788888765
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.6e-08 Score=92.41 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=64.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccC---Ccchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTY---PRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~---p~tfDlvh~~ 527 (617)
.+|||+|||+|.++..+++++. ..|+.+|. +.+++.+.++ |+ +-.++ |+.+..+.+ +.+||+|.++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 3699999999999998887653 14666664 5666655443 22 11111 222222211 3789999987
Q ss_pred hhhhhhhhcCCCcccchhhc--cccccCcceEEEecChh
Q 007128 528 TVFSDIEKRGCSGEDLLLEM--DRILRPTGFVIIRDKQS 564 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em--~RiLrPgG~~ii~~~~~ 564 (617)
..|.. . +...++.++ .|+|||||.+++.....
T Consensus 124 ~~~~~-~----~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 124 PPYAK-Q----EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCGGG-C----CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCc-h----hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 76541 1 455677777 99999999999987653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-07 Score=94.49 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=70.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec-----c-cccchhhhhhhcc--cC-Ccchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR-----G-LIGSIHNWCEAYS--TY-PRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r-----g-l~~~~~~~~e~~~--~~-p~tfDlvh~ 526 (617)
.+|||+|||+|.++.+|++. +. .|+.+|. +.+++.|.++ | +...+.-.+.++. .+ +.+||+|.+
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~ 177 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence 36999999999999999875 44 4666664 5666666554 3 1111111111211 13 378999987
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhh-ccccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRA-LNWEA 580 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~-~~w~~ 580 (617)
+ +. +...+|.++.|+|||||.+++..+. ..+.++...+.. .+|..
T Consensus 178 ~-----~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~ 224 (280)
T 1i9g_A 178 D-----ML----APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE 224 (280)
T ss_dssp E-----SS----CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCC
T ss_pred C-----Cc----CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCC
Confidence 2 22 5668999999999999999997764 344444444444 55654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-07 Score=105.15 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=64.1
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
-.+|||+|||+|.++..+++.+.. .|+.+|...+++.|.++ |+ +-.++.-.+.+ .+|..||+|.+..++.
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMGY 235 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCHH
T ss_pred CCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeEEEEEeCchH
Confidence 357999999999999999887541 45555542366555443 44 22222111222 2458899999987766
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEe
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
++... ++...+.++.|+|||||.+++.
T Consensus 236 ~~~~e--~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 236 MLFNE--RMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHTCH--HHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCcH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 55311 4456788999999999999853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-07 Score=91.59 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=70.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcc-cC-C-cchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYS-TY-P-RTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~-~~-p-~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+. +|+.+|. +.+++.|.++ |+-..+.....++. .. + ++||+|.++
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~---- 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD---- 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC----
T ss_pred CEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC----
Confidence 3699999999999999998744 5667774 5676666654 22111111111211 12 3 789999862
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRAL 576 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~ 576 (617)
. .+...++.++.|+|||||.+++..+. ....++...+...
T Consensus 166 -~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 166 -V----REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -S----SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 2 25678999999999999999998884 4555666665543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.1e-08 Score=101.53 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=78.7
Q ss_pred hhHHHhhhcchhhHhhhcCCc--eEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC-Ccchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKD--VWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY-PRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~--~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~-p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+ . .|+.+|. +.+++.+.++ |+-..++ +.++..+ +++||+|.++..|+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~~~~--~~d~~~~~~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI---RLTLCDVSAPAVEASRATLAANGVEGEVF--ASNVFSEVKGRFDMIISNPPFH 272 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC---BCEEEESBHHHHHHHHHHHHHTTCCCEEE--ECSTTTTCCSCEEEEEECCCCC
T ss_pred CeEEEecCccCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCEEE--EccccccccCCeeEEEECCCcc
Confidence 369999999999999998763 3 4566664 4666655544 2211111 1122222 48999999988876
Q ss_pred hhh-hcCCCcccchhhccccccCcceEEEecChh--HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 532 DIE-KRGCSGEDLLLEMDRILRPTGFVIIRDKQS--VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 532 ~~~-~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+.. .+..+...++.++.|+|||||.++|....- ....++.+... ++. +.. ...-+|+.++|.
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~~~---~~~-------~~gf~v~~~~k~ 337 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--HEV---IAQ-------TGRFKVYRAIMT 337 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--CEE---EEE-------CSSEEEEEEEC-
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--eEE---Eee-------CCCEEEEEEEeC
Confidence 310 011145789999999999999999875432 23334444332 222 221 345677777763
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6.9e-08 Score=103.56 Aligned_cols=115 Identities=6% Similarity=-0.050 Sum_probs=73.9
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec-----------cc-ccchhhhhhhcccCC-----cc
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR-----------GL-IGSIHNWCEAYSTYP-----RT 520 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r-----------gl-~~~~~~~~e~~~~~p-----~t 520 (617)
..|||+|||+|.++..++.. +.. .|+.+|. +.++++|.+. |+ .+.+.-.+.++...| ..
T Consensus 175 d~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~ 252 (438)
T 3uwp_A 175 DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 252 (438)
T ss_dssp CEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCC
Confidence 35999999999999888753 432 3566664 4565555431 22 011221222222222 47
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHH------HHHHHhhhhcccccc
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVV------DFVKKYLRALNWEAV 581 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~------~~~~~~~~~~~w~~~ 581 (617)
||+|.++.++- .. ++...|.||.|+|||||.||+.+..... ..+..+...++++.+
T Consensus 253 aDVVf~Nn~~F-~p----dl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~el 314 (438)
T 3uwp_A 253 TSVIFVNNFAF-GP----EVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVEL 314 (438)
T ss_dssp CSEEEECCTTC-CH----HHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEEEC
T ss_pred ccEEEEccccc-Cc----hHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheeeec
Confidence 89998765542 22 5678999999999999999999887632 235667788887764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-08 Score=95.58 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=65.4
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec-------cc--------------------------
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR-------GL-------------------------- 503 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r-------gl-------------------------- 503 (617)
.+|||+|||+|.++..|++. .. ..+|+.+|. +.+++.|.++ |+
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 46999999999999999875 11 236778885 6777766533 22
Q ss_pred --cc-------------ch-hhhhhhccc--C-C-cchhhhhhhhhhhhhhhc-----CCCcccchhhccccccCcceEE
Q 007128 504 --IG-------------SI-HNWCEAYST--Y-P-RTYDLLHAWTVFSDIEKR-----GCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 504 --~~-------------~~-~~~~e~~~~--~-p-~tfDlvh~~~~~~~~~~~-----~c~~~~~l~Em~RiLrPgG~~i 558 (617)
+. .. .|..+.++. . + .+||+|.|+..|.+.... ......++.++.|+|||||+++
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 211 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 211 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence 11 11 122222110 0 3 489999998666543210 0123478999999999999999
Q ss_pred EecCh
Q 007128 559 IRDKQ 563 (617)
Q Consensus 559 i~~~~ 563 (617)
+.+..
T Consensus 212 ~~~~~ 216 (250)
T 1o9g_A 212 VTDRS 216 (250)
T ss_dssp EEESS
T ss_pred EeCcc
Confidence 95543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-07 Score=94.02 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=59.7
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhccc-----------
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYST----------- 516 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~----------- 516 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.+. +..+.++.
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 46999999999999999875 34 4555553 4555555443 32 11111 11111111
Q ss_pred --C--C-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 517 --Y--P-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 517 --~--p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
| + .+||+|.++.... +...++.++.++|||||.+++.+
T Consensus 139 ~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 1 2 6899998765443 34578999999999999999976
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-07 Score=98.86 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=67.8
Q ss_pred HHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEe----eccc---ccchhhhhhhcc
Q 007128 443 VDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIY----DRGL---IGSIHNWCEAYS 515 (617)
Q Consensus 443 V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~----~rgl---~~~~~~~~e~~~ 515 (617)
...|.+.|......-+=..|||||||+|.++...++.|.. .|.++|..+++..|. ..|+ |-.++.-.+.+.
T Consensus 68 t~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~ 145 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE 145 (376)
T ss_dssp HHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred HHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec
Confidence 3456665532111111224999999999998877777652 233444334544443 3355 444554444443
Q ss_pred cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEE
Q 007128 516 TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 516 ~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
.|..||+|.+.-+...+. +...+..++...+|.|||||.++
T Consensus 146 -lpe~~DvivsE~~~~~l~-~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 -LPEQVDAIVSEWMGYGLL-HESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp -CSSCEEEEECCCCBTTBT-TTCSHHHHHHHHHHHEEEEEEEE
T ss_pred -CCccccEEEeeccccccc-ccchhhhHHHHHHhhCCCCceEC
Confidence 578999998743333222 33356788888999999999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-07 Score=95.72 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=76.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec-----cc-----------ccchh-hhhhhcccCCcch
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR-----GL-----------IGSIH-NWCEAYSTYPRTY 521 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r-----gl-----------~~~~~-~~~e~~~~~p~tf 521 (617)
++|||+|||+|+++..+++.+. .+|+.+|. +.+++.|.++ |+ +-.++ |-.+-+.. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 5799999999999999998743 25666664 4565555433 11 11111 11111122 5889
Q ss_pred hhhhhhhhhhhhhhcCCC--cccchhhccccccCcceEEEecC-----hhHHHHHHHhhhhcccccccccccCCCCCCCC
Q 007128 522 DLLHAWTVFSDIEKRGCS--GEDLLLEMDRILRPTGFVIIRDK-----QSVVDFVKKYLRALNWEAVATTADASSDSDKD 594 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~~c~--~~~~l~Em~RiLrPgG~~ii~~~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 594 (617)
|+|.++...+ .. ..-. ...++.++.|+|||||.+++... ......+.+.++.. +..+ .....-...+ .
T Consensus 154 D~Ii~d~~~~-~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v-~~~~~~vP~~-~ 228 (281)
T 1mjf_A 154 DVIIADSTDP-VG-PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRV-YYYSFPVIGY-A 228 (281)
T ss_dssp EEEEEECCCC-C------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEE-EEEEECCTTS-S
T ss_pred eEEEECCCCC-CC-cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCce-EEEEEecCCC-C
Confidence 9999754432 11 0001 25689999999999999999632 22333333333332 2211 1111001111 3
Q ss_pred CCeEEEEEEec
Q 007128 595 GDEVVFIVQKK 605 (617)
Q Consensus 595 ~~~~~l~~~K~ 605 (617)
+...+++|.|.
T Consensus 229 g~~~~~~as~~ 239 (281)
T 1mjf_A 229 SPWAFLVGVKG 239 (281)
T ss_dssp SSEEEEEEEES
T ss_pred ceEEEEEeeCC
Confidence 45778889886
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-07 Score=92.97 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=80.4
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------cc----ccchh-hhhhhcccCCcchhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------GL----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------gl----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
.-++|||+|||+|+++..++++ ++ ..|+.+|. +.+++.|.+. ++ +-.++ |-.+-+...+++||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 3467999999999999999987 43 24555553 5666655543 11 11111 1111122234899999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh-----hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEE
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-----SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 599 (617)
.++...+........-..++.++.|+|||||.+++.... .....+.+.+++. +..+ ..........+.+...+
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v-~~~~~~vp~~~~g~w~~ 230 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT-KLYTANIPTYPSGLWTF 230 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE-EEEEECCTTSGGGCEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCe-EEEEEecCcccCcceEE
Confidence 985443211100011257899999999999999997432 2233344444433 2221 21110011122346788
Q ss_pred EEEEecc
Q 007128 600 FIVQKKI 606 (617)
Q Consensus 600 l~~~K~~ 606 (617)
++|.|++
T Consensus 231 ~~ask~~ 237 (275)
T 1iy9_A 231 TIGSKKY 237 (275)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 8999873
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-07 Score=90.33 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=60.9
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC-----cchh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP-----RTYD 522 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p-----~tfD 522 (617)
.+|||+|||+|.++..|++. +. .|+.+|. +.+++.+.++ |+ +-.++ +..+.++.++ ++||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 47999999999999999875 44 4555553 5666655543 33 11111 2212222222 6899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+|+++.. ..+...++.++.|+|||||.+++.+.
T Consensus 148 ~v~~d~~-------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD-------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC-------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC-------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9987433 22456789999999999999999654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-07 Score=92.86 Aligned_cols=143 Identities=8% Similarity=0.017 Sum_probs=77.5
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------c----ccchh-hhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------L----IGSIH-NWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------l----~~~~~-~~~e~~~~~p~tfDlvh~ 526 (617)
.+|||+|||+|+++..+++. ++ .+|+.+|. +.+++.+.++- + +-.++ |..+.+...+++||+|.+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 57999999999999999987 33 25666664 56666554431 1 11111 111112223488999997
Q ss_pred hhhhhhhhh-cCCCcccchhhccccccCcceEEEecCh-----hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 527 WTVFSDIEK-RGCSGEDLLLEMDRILRPTGFVIIRDKQ-----SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 527 ~~~~~~~~~-~~c~~~~~l~Em~RiLrPgG~~ii~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
+...+.+.. ..-....++.++.|+|||||.+++.... .....+.+.+.+. +..+ ..........+.+...++
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v-~~~~~~vp~~p~g~~~f~ 247 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT-RVYLGFMTTYPSGMWSYT 247 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE-EEEEEECTTSTTSEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce-EEEEeecCccCCCceEEE
Confidence 532220110 0011257899999999999999997432 2223333333332 2221 211100112224567788
Q ss_pred EEEecc
Q 007128 601 IVQKKI 606 (617)
Q Consensus 601 ~~~K~~ 606 (617)
+|.|++
T Consensus 248 ~as~~~ 253 (296)
T 1inl_A 248 FASKGI 253 (296)
T ss_dssp EEESSC
T ss_pred EecCCC
Confidence 999874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.98 E-value=9.4e-07 Score=96.37 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=79.9
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeeccccccccccccc-----------------chhhhhccCCCccchhhhHHH
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS-----------------SDVITMSLAPNDVHQNQIQFA 255 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~-----------------~~V~gvDis~~dl~~a~~~~a 255 (617)
...+.+.+++.. .. +.+|||.|||+|.++..+++ ..++|+|+++.++..++....
T Consensus 158 ~v~~~mv~~l~~------~~--~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINP------QM--GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCC------CT--TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CC--CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 455666666643 22 36899999999998877654 248899998877766664333
Q ss_pred HHhCC---CcccccccccccCCCCCcccccccccccccccc-cc---------------ceEEEEecccccCCceeeecC
Q 007128 256 LERGI---PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-RD---------------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 256 ~~rg~---~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~-~~---------------~~~L~el~RvLrPGG~lvis~ 316 (617)
.+++ ...+..+|+...+.. .+||+|+++--+.+... .. ..++..+.+.|+|||++++..
T Consensus 230 -l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 230 -LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp -HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 3455 567777887776654 48999998743322111 00 135788899999999999987
Q ss_pred hhh
Q 007128 317 PEA 319 (617)
Q Consensus 317 p~~ 319 (617)
|..
T Consensus 308 p~~ 310 (445)
T 2okc_A 308 PDN 310 (445)
T ss_dssp EHH
T ss_pred CCc
Confidence 764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-07 Score=96.94 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC--CCceEEEeec---------cc-------ccc-hhhhhhhcccC---
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG--PNTLKLIYDR---------GL-------IGS-IHNWCEAYSTY--- 517 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~--~~~l~~~~~r---------gl-------~~~-~~~~~e~~~~~--- 517 (617)
.+|||+|||+|.++..|+..+.. .|+.+|. +.+++.|.++ |+ +-. ..+|......+
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 46999999999999999887641 3444443 2444443332 11 111 12354322111
Q ss_pred --CcchhhhhhhhhhhhhhhcCCCcccchhhcccccc---C--cceEEEe-cChh-----HHHHHHHhhhhcc-cccc
Q 007128 518 --PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILR---P--TGFVIIR-DKQS-----VVDFVKKYLRALN-WEAV 581 (617)
Q Consensus 518 --p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLr---P--gG~~ii~-~~~~-----~~~~~~~~~~~~~-w~~~ 581 (617)
+.+||+|.+..++.|.. +...++.++.|+|| | ||.+++. .+.. ...++.+.++..+ |+..
T Consensus 159 ~~~~~fD~Ii~~dvl~~~~----~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~ 232 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFHQ----AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAE 232 (281)
T ss_dssp HSCSSBSEEEEESCCSCGG----GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEE
T ss_pred ccCCCCCEEEEeCcccChH----HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEE
Confidence 37899999877776554 57789999999999 9 9976543 2211 1234555666667 7763
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.97 E-value=5e-07 Score=89.56 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCC-----cchh
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYP-----RTYD 522 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p-----~tfD 522 (617)
++|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.+. +..+.++.++ ++||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 47999999999999999875 34 3555553 4565555443 33 11111 2222222222 6899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+|+++.... +...++.++.|+|||||++++.+.
T Consensus 151 ~V~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 151 LIFIDADKR-------NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEECSCGG-------GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 998754422 446789999999999999999654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-06 Score=89.26 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccc---c
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRC---R 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~---l 288 (617)
.+|||+|||+|.|+..++++ .+.++|+.. ++....+.. ...+.++.....+++...++++.||+|+|..+ -
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG 153 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSS 153 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecCccCcC
Confidence 58999999999999977654 355666653 222111100 01122333333444445677789999998653 2
Q ss_pred cccccccc--eEEEEecccccCC-ceeeecChhh
Q 007128 289 IDWLQRDG--ILLLELDRLLRPG-GYFAYSSPEA 319 (617)
Q Consensus 289 ~h~~~~~~--~~L~el~RvLrPG-G~lvis~p~~ 319 (617)
.++.+... .+|..+.++|+|| |.|++..+..
T Consensus 154 ~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 154 SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 22433321 2467788999999 9999976553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-07 Score=95.63 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=61.8
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccC------Ccc
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTY------PRT 520 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~------p~t 520 (617)
-++|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.+ +.+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 357999999999999999864 44 4555563 5666665543 33 11111 222222222 478
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
||+|.++.... +...++.++.|+|||||.+++.+
T Consensus 157 fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCchH-------HHHHHHHHHHHhCCCCeEEEEec
Confidence 99998753321 45678999999999999999876
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-07 Score=97.39 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc----ccchh-hhhhhcccC---Ccchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL----IGSIH-NWCEAYSTY---PRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~-~~~e~~~~~---p~tfDlvh~ 526 (617)
.+|||+|||+|+|+..++..+. .|+.+|. +.+++.|.++ |+ +-.++ |..+.+... .++||+|.+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 3699999999999999999876 6777775 5777666554 22 11111 111111111 368999987
Q ss_pred hh----------hhhhhhhcCCCcccchhhccccccCcceEEEecChh-------HHHHHHHhhhhccccc
Q 007128 527 WT----------VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 527 ~~----------~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------~~~~~~~~~~~~~w~~ 580 (617)
+- ++.... +...++.++.|+|||||++++..... ..+.+++.+...+++.
T Consensus 232 dPP~~~~~~~~~~~~~~~----~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFD----HLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CCCSEEECTTCCEEEHHH----HHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCccccCCchHHHHHHHH----HHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 32 122222 35678999999999999977755432 3334555666666655
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-07 Score=96.25 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=71.3
Q ss_pred hhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCCcchhhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYPRTYDLLHAWT- 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p~tfDlvh~~~- 528 (617)
.+|||+|||+|+++..|++. +. .|+.+|. +.+++.+.++ |+ +-.++.-.+.++.++++||+|.++-
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~---~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDG---VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 36999999999999999864 23 4666774 5666666554 33 1122211222333457899998642
Q ss_pred -----hhhhhhhc--CCC----------cccchhhccccccCcceEEEecC----hhHHHHHHHhhhhccccc
Q 007128 529 -----VFSDIEKR--GCS----------GEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 -----~~~~~~~~--~c~----------~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~~~w~~ 580 (617)
++.+...- .-. ...+|.++.|+|||||.+++..- .+..+.++.+++...++.
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 22211100 000 14789999999999999999532 233445677777766654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.89 E-value=3.1e-07 Score=88.36 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=69.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c 538 (617)
.+|||+|||+|.++..|+..+.. .|+.+|. +.+++.+.++-- .+...+.++..+|++||+|.++..|.+....
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~-- 126 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG--GVNFMVADVSEISGKYDTWIMNPPFGSVVKH-- 126 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCCCCEEEEEECCCC--------
T ss_pred CEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCCCCeeEEEECCCchhccCc--
Confidence 46999999999999999987541 3556663 566666655421 1111222333356899999999888876421
Q ss_pred CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcc
Q 007128 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALN 577 (617)
Q Consensus 539 ~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~ 577 (617)
....++.++.|+| |+.+++. +....+.+.+++...+
T Consensus 127 ~~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG 162 (200)
T ss_dssp -CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC
Confidence 2346788888888 5544444 5566677778777775
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-07 Score=96.66 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=61.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc---CCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST---YPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~---~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++.+..-..|+.+|. +++++.|.++ |+- .+...+.++.. -+.+||+|.+..++.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIFVTVGVD 155 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccCCCeEEEEEcCCHH
Confidence 47999999999999999876331012555553 5676666555 331 12111122211 137899999988877
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
|+. .++.++|||||.+++....
T Consensus 156 ~~~----------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 156 EVP----------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CCC----------HHHHHHEEEEEEEEEEBCB
T ss_pred HHH----------HHHHHhcCCCcEEEEEECC
Confidence 542 5788999999999997654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-07 Score=89.38 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=61.3
Q ss_pred hhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|.++..|++.. . +|+.+|. +.+++.+.++ |+ +-..+ +..+.++ -+.+||+|++..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 479999999999999998764 4 4555553 5666666554 22 11111 2222222 137899999988
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++.++. .++.|+|||||.+++.....
T Consensus 155 ~~~~~~----------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 155 AGPKIP----------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp BBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred chHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence 777543 48899999999999987654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-06 Score=87.34 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=73.2
Q ss_pred hhHHHhhh------cchh-hHhhhcCCceEEEEeecCCCCCceEEEeeccccc-chhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKA------HLGS-FAAALKEKDVWVMSVVPEDGPNTLKLIYDRGLIG-SIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~------G~G~-fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl~~-~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|| |+|+ .++.+...+. .|+.+|....+ + ++.- ...|+. .++ ++++||+|.++...+
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~v----~-~v~~~i~gD~~-~~~-~~~~fD~Vvsn~~~~ 134 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDFV----S-DADSTLIGDCA-TVH-TANKWDLIISDMYDP 134 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCCB----C-SSSEEEESCGG-GCC-CSSCEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCCC----C-CCEEEEECccc-cCC-ccCcccEEEEcCCcc
Confidence 36999999 5576 2333333234 35555542222 1 2211 122332 222 348999999864322
Q ss_pred hh-----h--hcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEE
Q 007128 532 DI-----E--KRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 532 ~~-----~--~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
.. . .....++.++.|+.|+|||||.|++.... ....++.++++..+|..+ +..- ... .+.|.+|+|+
T Consensus 135 ~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v-~~~a--sr~--~s~e~~lv~~ 209 (290)
T 2xyq_A 135 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTA-FVTN--VNA--SSSEAFLIGA 209 (290)
T ss_dssp C---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEE-EEEG--GGT--TSSCEEEEEE
T ss_pred ccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEE-EEEE--cCC--CchheEEecC
Confidence 10 0 00111237899999999999999996532 233578888888877655 3431 111 3468888887
Q ss_pred e
Q 007128 604 K 604 (617)
Q Consensus 604 K 604 (617)
.
T Consensus 210 ~ 210 (290)
T 2xyq_A 210 N 210 (290)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-07 Score=94.67 Aligned_cols=117 Identities=18% Similarity=0.059 Sum_probs=73.3
Q ss_pred chhhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCceEEEeec----ccccchhhhhhh---cccCCcchhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA---YSTYPRTYDLLHA 526 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~---~~~~p~tfDlvh~ 526 (617)
.-..|||+|||+|+++..++... . .|+.+|. +.+++.|.++ |+- .++..+.+ ++.....||+|.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~---~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTS---PVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTS---CEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEEE
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCc---eEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEEE
Confidence 34579999999999999888743 4 4566664 5676666554 331 22222223 3322267999998
Q ss_pred hhhhhhhhhc----CCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccc
Q 007128 527 WTVFSDIEKR----GCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 527 ~~~~~~~~~~----~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~ 581 (617)
+--|...... ......++.++.|+|||||.+++..+.. +.++.+++ .+|+..
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~ 334 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALR 334 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEE
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEE
Confidence 5443210000 0012578999999999999998876653 23566666 888764
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-07 Score=90.18 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=58.4
Q ss_pred hhHHHhhhcchhhHhhhcCCc---eEEEEeecCCC-CCceEEEeecc----c----ccchhhhhhhcc---cCCcchhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKD---VWVMSVVPEDG-PNTLKLIYDRG----L----IGSIHNWCEAYS---TYPRTYDLL 524 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~---~~v~~v~~~~~-~~~l~~~~~rg----l----~~~~~~~~e~~~---~~p~tfDlv 524 (617)
.+|||+|||+|.++..|++.. . .|+.+|. +.+++.+.++. + ...+...+.+.. .-+.+||+|
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 379999999999999998752 3 4555553 46665554431 1 011111111111 113789999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++...+. .++.++.|+|||||.+++....
T Consensus 156 ~~~~~~~----------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 156 HVGAAAP----------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EECSBBS----------SCCHHHHHTEEEEEEEEEEESC
T ss_pred EECCchH----------HHHHHHHHhcCCCcEEEEEEec
Confidence 9865553 4667899999999999997654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.8e-07 Score=91.74 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=65.1
Q ss_pred cchhhHHHhhhcc--hhhHhhhcC---CceEEEEeecCCC-CCceEEEeecc----------cccchhhhhhhc--ccCC
Q 007128 457 NSLRNLMDMKAHL--GSFAAALKE---KDVWVMSVVPEDG-PNTLKLIYDRG----------LIGSIHNWCEAY--STYP 518 (617)
Q Consensus 457 ~~~r~vLD~g~G~--G~fa~~L~~---~~~~v~~v~~~~~-~~~l~~~~~rg----------l~~~~~~~~e~~--~~~p 518 (617)
..++.|||+|||+ ++....++. .+. .|+.+|. +.||..+.++- +.+.+.++..-+ +...
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~ 153 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELR 153 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccc
Confidence 4678999999998 334444332 244 5777775 68887776541 123333321100 1001
Q ss_pred cchh-----hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 519 RTYD-----LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 519 ~tfD-----lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++|| .|.++.+|+|+..+ -++..+|.++.+.|+|||+|+|++.
T Consensus 154 ~~~D~~~p~av~~~avLH~l~d~-~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 154 DTLDLTRPVALTVIAIVHFVLDE-DDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TTCCTTSCCEEEEESCGGGSCGG-GCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cccCcCCcchHHhhhhHhcCCch-hhHHHHHHHHHHhCCCCcEEEEEec
Confidence 5566 37789999998722 1245799999999999999999953
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.81 E-value=7.4e-07 Score=93.69 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=63.7
Q ss_pred chhhHHHhhhcchhhHhhhcCCc-eEEEEeecCCC-CCceEEEeec------cc----ccchh-hhhhhcccCC-cchhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKD-VWVMSVVPEDG-PNTLKLIYDR------GL----IGSIH-NWCEAYSTYP-RTYDL 523 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~-~~v~~v~~~~~-~~~l~~~~~r------gl----~~~~~-~~~e~~~~~p-~tfDl 523 (617)
.-++|||+|||+|.++..|++.. + ..|+.+|. +.++++|.++ |+ +-.++ |..+.+..++ ++||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 34689999999999999999862 2 25666664 5676666543 22 11111 2222223343 79999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|.++...+......-....++.++.|+|||||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9985432211001001357899999999999999996
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=8.1e-06 Score=83.26 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=60.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. .. + +|||||||+|.++..|++. .|+++|+++.++..++.+.. ..++.+..+|+.
T Consensus 34 ~i~~~Iv~~~~~------~~--~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l 101 (271)
T 3fut_A 34 AHLRRIVEAARP------FT--G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDAL 101 (271)
T ss_dssp HHHHHHHHHHCC------CC--S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGG
T ss_pred HHHHHHHHhcCC------CC--C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChh
Confidence 455667777665 22 3 7999999999999999876 59999999988776654332 246788888998
Q ss_pred ccCCCCC-cccccccc
Q 007128 271 RLPYPSR-SFELAHCS 285 (617)
Q Consensus 271 ~lpf~~~-sFDlV~~s 285 (617)
.+++++. .||.|+++
T Consensus 102 ~~~~~~~~~~~~iv~N 117 (271)
T 3fut_A 102 LYPWEEVPQGSLLVAN 117 (271)
T ss_dssp GSCGGGSCTTEEEEEE
T ss_pred hCChhhccCccEEEec
Confidence 8887643 57887765
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-06 Score=91.98 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=37.0
Q ss_pred ccCCCCCccccccccccccccccccce--------------------------------------EEEEecccccCCcee
Q 007128 271 RLPYPSRSFELAHCSRCRIDWLQRDGI--------------------------------------LLLELDRLLRPGGYF 312 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s~~l~h~~~~~~~--------------------------------------~L~el~RvLrPGG~l 312 (617)
.-.||+++||+|+++.+ +||..+.+. +|+..++.|+|||.+
T Consensus 143 ~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~m 221 (374)
T 3b5i_A 143 RRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAM 221 (374)
T ss_dssp SCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34588999999999987 789775432 255669999999999
Q ss_pred eecChhh
Q 007128 313 AYSSPEA 319 (617)
Q Consensus 313 vis~p~~ 319 (617)
+++....
T Consensus 222 vl~~~gr 228 (374)
T 3b5i_A 222 FLVCLGR 228 (374)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9985533
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.9e-06 Score=85.13 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=61.6
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc------c-ccchhhhhhhcccCCcchhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG------L-IGSIHNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg------l-~~~~~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
-++|||+|||+|+++..+++.+ ..|+.+|. +.+++.|.++- + -..+.-...+...+.++||+|.++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~-- 147 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ-- 147 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS--
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC--
Confidence 3689999999999999998874 36777774 67777665541 1 0001111122222337899998752
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+....+.++.|+|||||.+++..
T Consensus 148 -------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 134458999999999999999963
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=8.4e-07 Score=92.71 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=61.5
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeecc------c----ccchh-hhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRG------L----IGSIH-NWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rg------l----~~~~~-~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+|||+|+++..+++. +. ..|+.+|. +.+++.|.++- + +-.++ |..+.+...+++||+|.+
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 57999999999999999986 33 25666664 56666655431 1 11111 222222223588999997
Q ss_pred hhhhhhhhhcCCCc--ccchhhccccccCcceEEEec
Q 007128 527 WTVFSDIEKRGCSG--EDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 527 ~~~~~~~~~~~c~~--~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+...+ .... -.+ ..++.++.|+|||||.+++..
T Consensus 196 d~~~p-~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDP-IGPA-ETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCS-SSGG-GGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCC-CCcc-hhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 54211 1100 011 578999999999999999964
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-06 Score=89.55 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=67.9
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCC--------------
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPS-------------- 276 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~-------------- 276 (617)
.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...++ ++.+..+|+..+. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~-~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ-YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHH-HHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57999999999999998875 5999999999988887 44555555 5778887876542 121
Q ss_pred CccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 277 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 277 ~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+||+|++.- +...+..++.++|+++|.+++.+
T Consensus 294 ~~fD~Vv~dP-------Pr~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 294 YQCETIFVDP-------PRSGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp CCEEEEEECC-------CTTCCCHHHHHHHTTSSEEEEEE
T ss_pred CCCCEEEECc-------CccccHHHHHHHHhCCCEEEEEE
Confidence 3799997431 11235667888899999888764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.79 E-value=6.8e-06 Score=83.08 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=57.2
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
...+.+.+.+.. ..+ .+|||||||+|.++..|+++ .|+++|+++.++..++.+... ..++.+..+|+.
T Consensus 16 ~i~~~iv~~~~~------~~~--~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~ 85 (255)
T 3tqs_A 16 FVLQKIVSAIHP------QKT--DTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDAL 85 (255)
T ss_dssp HHHHHHHHHHCC------CTT--CEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTT
T ss_pred HHHHHHHHhcCC------CCc--CEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchH
Confidence 455667777765 333 68999999999999999876 599999999887766643322 346778888888
Q ss_pred ccCCCC----Cccc
Q 007128 271 RLPYPS----RSFE 280 (617)
Q Consensus 271 ~lpf~~----~sFD 280 (617)
.+++++ +.||
T Consensus 86 ~~~~~~~~~~~~~~ 99 (255)
T 3tqs_A 86 QFDFSSVKTDKPLR 99 (255)
T ss_dssp TCCGGGSCCSSCEE
T ss_pred hCCHHHhccCCCeE
Confidence 887653 4577
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-05 Score=84.43 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=64.9
Q ss_pred CceeEEEeecccccccccccccc--------------------hhhhhccCCCccchhhhHHHHH-hCCCcccccc---c
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS--------------------DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVL---G 268 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~--------------------~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~---d 268 (617)
...-+|+|+||++|..+..+... .|..-|+..+|........... ...+..|..+ +
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877766543 1333455555544333211110 0001123222 3
Q ss_pred ccccCCCCCccccccccccccccccccceEE---------------------------------EEecccccCCceeeec
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILL---------------------------------LELDRLLRPGGYFAYS 315 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L---------------------------------~el~RvLrPGG~lvis 315 (617)
.....||+++||+|+++.+ +||..+....+ +...+.|+|||.++++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4456789999999999887 78987654333 2338999999999997
Q ss_pred Chh
Q 007128 316 SPE 318 (617)
Q Consensus 316 ~p~ 318 (617)
...
T Consensus 209 ~~g 211 (359)
T 1m6e_X 209 ILG 211 (359)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.79 E-value=7.7e-07 Score=93.08 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred hhHHHhhhcchhhHhhhcCC-c--eEEEEeecCCC-CCceEEEeeccc-----------------ccchh-hhhhhcccC
Q 007128 460 RNLMDMKAHLGSFAAALKEK-D--VWVMSVVPEDG-PNTLKLIYDRGL-----------------IGSIH-NWCEAYSTY 517 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~--~~v~~v~~~~~-~~~l~~~~~rgl-----------------~~~~~-~~~e~~~~~ 517 (617)
.+|||+|||+|.++..|++. + . .|+.+|. +.+++.|.++.- +-.++ |..+....+
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 37999999999999999875 2 4 3455553 455555544311 11111 222211123
Q ss_pred C-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 518 P-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 518 p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+ ++||+|.++.. +...++.++.|+|||||.+++..+.
T Consensus 184 ~~~~fD~V~~~~~---------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 184 KSLTFDAVALDML---------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ----EEEEEECSS---------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCC---------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3 68999987321 3445899999999999999987764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.78 E-value=4e-07 Score=98.86 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=61.8
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEE-------eec----cc-ccchh-----hhhh--hcccC
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLI-------YDR----GL-IGSIH-----NWCE--AYSTY 517 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~-------~~r----gl-~~~~~-----~~~e--~~~~~ 517 (617)
-.+|||+|||+|.++..|+.. +.. .|+.+|. +.+++.| .++ |+ ++.+. ++.. +|...
T Consensus 243 g~~VLDLGCGsG~la~~LA~~~g~~--~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 243 GDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 346999999999999999985 321 3455553 3444444 332 32 12211 1111 12111
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+.+||+|.++.++. .. ++..+|.||.|+|||||.+++.++..
T Consensus 321 ~~~FDvIvvn~~l~-~~----d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 321 IPQCDVILVNNFLF-DE----DLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp GGGCSEEEECCTTC-CH----HHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cCCCCEEEEeCccc-cc----cHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 37899999864441 22 56678999999999999999997543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1e-06 Score=91.38 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=61.0
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec------cc----ccchh-hhhhhcccCCcchhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR------GL----IGSIH-NWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r------gl----~~~~~-~~~e~~~~~p~tfDlvh~ 526 (617)
-++|||+|||+|.++..|+++.- +..|+.+|. +.+++.|.++ |+ +-.++ |-.+-++..+++||+|.+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 36899999999999999998731 125666664 5666655543 11 11111 111112223489999998
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+...+......-....++.++.|+|||||.+++..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 54432111000112568999999999999999875
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-07 Score=93.41 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=54.8
Q ss_pred hhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc---ccchh-h----hhhhcccC-Ccchhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-N----WCEAYSTY-PRTYDL 523 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~----~~e~~~~~-p~tfDl 523 (617)
.+|||+|||+|.++..|+.+ +. .|+.+|. +.|++.|.++ |+ +-.++ + +.+.++.. +.+||+
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 46999999999999998875 34 5666664 5777666554 32 11222 1 11122211 158999
Q ss_pred hhhhhhhhhhhh-----------cCCCcccchhhccccccCcceEEEec
Q 007128 524 LHAWTVFSDIEK-----------RGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 524 vh~~~~~~~~~~-----------~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
|.++-.|.+... .......++.++.|+|||||.+.+.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 998744432110 00112356778999999988776554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5e-07 Score=101.64 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=64.7
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee----ccc--ccchhhhhhhcc-cC-Ccchhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD----RGL--IGSIHNWCEAYS-TY-PRTYDLLHAWTVFS 531 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~----rgl--~~~~~~~~e~~~-~~-p~tfDlvh~~~~~~ 531 (617)
+|||||||.|.++..|++.|. +|+.+|. +.++++|.. +|. +-..+.-.|++. .+ ++.||+|.|..+|.
T Consensus 69 ~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 69 NVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred eEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 699999999999999999999 5666664 577776654 443 222222234431 23 38999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEec
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
|+.... ....+..+-+.|+++|..++-.
T Consensus 146 hv~~~~--~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 146 HIVHLH--GIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHHH--CHHHHHHHHHHHHHHSSEEEEE
T ss_pred cCCCHH--HHHHHHHHHHHhccccceeeEE
Confidence 997321 1123445666688888766543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-06 Score=91.01 Aligned_cols=100 Identities=8% Similarity=0.065 Sum_probs=59.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec------cc----ccchh-hhhhhcccCCcchhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR------GL----IGSIH-NWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r------gl----~~~~~-~~~e~~~~~p~tfDlvh~~ 527 (617)
++|||+|||+|+++..|++..- +..|+.+|. +.+++.|.++ |+ +-.++ |..+.+..-+++||+|.++
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 5799999999999999998621 125666674 5666665543 21 11111 2111122224889999975
Q ss_pred hhhhhhhhcCCCc-ccchhhccccccCcceEEEec
Q 007128 528 TVFSDIEKRGCSG-EDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ~~~~~~~~~~c~~-~~~l~Em~RiLrPgG~~ii~~ 561 (617)
...+ .....-.. ..++.++.|+|||||.+++..
T Consensus 189 ~~~~-~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SSDP-VGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCC-CCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 4322 21111011 678999999999999999975
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-06 Score=84.53 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=75.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-cc-chhhhhhhcccCCcchhhhhhhhhhhhhhhc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IG-SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKR 536 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~-~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~ 536 (617)
.+|||+|||+|.++..|++.+.. +|+.+|. +.+++.+.++-- .+ .+.-.+.++..+|.+||+|.++-.|.... .
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~-~ 127 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR-K 127 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS-T
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc-C
Confidence 46999999999999999987542 4666664 566665554421 01 22222334444568999999977766332 1
Q ss_pred CCCcccchhhccccccCcceEEEe-cChhHHHHHHHhhhhccccc
Q 007128 537 GCSGEDLLLEMDRILRPTGFVIIR-DKQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 537 ~c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~~~~~~~~~~w~~ 580 (617)
-....++.++.|+| ||.+++. .+....+.+.+++...+|+.
T Consensus 128 -~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 128 -HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp -TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred -CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 13346788888888 6655554 25567777888888888765
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-06 Score=88.50 Aligned_cols=101 Identities=10% Similarity=0.074 Sum_probs=61.9
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc------c----ccchh-hhhhhcccCCcchhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG------L----IGSIH-NWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg------l----~~~~~-~~~e~~~~~p~tfDlvh~ 526 (617)
-++|||+|||.|+++..+++..- +.+|+.+|. +.+++.+.++- + +-.++ |..+.+...+++||+|.+
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 36899999999999999997631 125566663 45555554431 1 01111 111112222589999998
Q ss_pred hhhhhhhhhcCCCc--ccchhhccccccCcceEEEecC
Q 007128 527 WTVFSDIEKRGCSG--EDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 527 ~~~~~~~~~~~c~~--~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+...+..... .+ ..++.++.|+|||||.+++...
T Consensus 158 d~~~~~~~~~--~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAE--TLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGG--GGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcch--hhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5433211111 12 5789999999999999998843
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.9e-07 Score=89.42 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC-c-chhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP-R-TYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p-~-tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|++... .+|+.+|. +.+++.+.++ |+ ..+...+.+ ...++ . .||+|.+..++.
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDVIIVTAGAP 169 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcccCCCCCCCccEEEECCcHH
Confidence 4799999999999999998641 24555563 4666655554 22 111111111 12233 3 499999876665
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
++ ..++.|+|||||.+++.-...
T Consensus 170 ~~----------~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 170 KI----------PEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SC----------CHHHHHTEEEEEEEEEEECSS
T ss_pred HH----------HHHHHHhcCCCcEEEEEEecC
Confidence 33 348889999999999987643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-06 Score=88.85 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=61.2
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.+|||+|||+|+|+..|++... ...|+.+|. +.+++.|.++ |+ +-.+..-.+.++ .+.+||+|.++...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-LKDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-CTTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-ccCCceEEEECCcc--
Confidence 4699999999999999987621 113555553 4555554432 22 111111112221 24789999874322
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+...++.++.|+|||||.+++.....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 56789999999999999999987754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.3e-06 Score=85.88 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=58.3
Q ss_pred hhHHHhhhcchhhHhhhcCC-ce----EEEEeecCCC-CCceEEEeeccc--------ccchhhhhhhcc-cCC--cchh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DV----WVMSVVPEDG-PNTLKLIYDRGL--------IGSIHNWCEAYS-TYP--RTYD 522 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~----~v~~v~~~~~-~~~l~~~~~rgl--------~~~~~~~~e~~~-~~p--~tfD 522 (617)
.+|||+|||+|.+++.|++. +. .-..|+.+|. +.+++.+.++.- ...++..+.+.. .++ ++||
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 165 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYN 165 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEE
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCCcc
Confidence 36999999999999999874 21 0003455553 466665554421 111111111111 233 6899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|++...+. .++.++.++|||||.+++.-..
T Consensus 166 ~I~~~~~~~----------~~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 166 AIHVGAAAP----------DTPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEECSCBS----------SCCHHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchH----------HHHHHHHHHhcCCCEEEEEEec
Confidence 999866655 3558899999999999997654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.3e-06 Score=90.84 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=61.9
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------c-c----ccchh-hhhhhcccCCcchhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------G-L----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------g-l----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
-++|||+|||+|+++..|++. ++ ..|+.+|. +.+++.+.++ | + +-.++ |..+-+...+++||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 367999999999999999987 23 25666664 4666655443 1 1 11111 1111122224899999
Q ss_pred hhhhhhhh---hhhcCCCcccchhhccccccCcceEEEec
Q 007128 525 HAWTVFSD---IEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 525 h~~~~~~~---~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.++...+. .....-....++.++.|+|||||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98654431 00000013578999999999999999873
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-06 Score=92.53 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccc--hhhhhhhcccCCcchhhhhhhhhh-h
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGS--IHNWCEAYSTYPRTYDLLHAWTVF-S 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~--~~~~~e~~~~~p~tfDlvh~~~~~-~ 531 (617)
.+|||+|||+|+|+..++..+.. |+.+|. +.+++.+.++ |+-.. ..|..+.+..++..||+|.++--. .
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 36999999999999999998773 666674 5666665544 33111 112222223335459999864211 0
Q ss_pred ----hhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhcccc
Q 007128 532 ----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNWE 579 (617)
Q Consensus 532 ----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w~ 579 (617)
.+.....+...++.++.|+|||||++++..... ..+.++..+...+.+
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~ 350 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR 350 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence 000000134578889999999999998554432 334455555544433
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.66 E-value=1.3e-06 Score=88.91 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=65.0
Q ss_pred hhHHHhhhcchhhHhhhcC--Cc-eEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhccc----CCcchhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE--KD-VWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYST----YPRTYDLLH 525 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~--~~-~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~----~p~tfDlvh 525 (617)
..|||+|||+|+++..|++ .+ . .|+.+|. +.+++.+.++ |+ +-.++.-...++. -+.+||+|.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKG---TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 3699999999999999986 33 3 4556663 4566555444 33 1111111112221 147899998
Q ss_pred hh------hhhh--------hhhhcCCCcccchhhccccccCcceEEEecC----hhHHHHHHHhhhh
Q 007128 526 AW------TVFS--------DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK----QSVVDFVKKYLRA 575 (617)
Q Consensus 526 ~~------~~~~--------~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~----~~~~~~~~~~~~~ 575 (617)
++ +++. ++....-....+|.++.|+|||||.+++..- .+..+.++.+++.
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~ 229 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence 75 2221 1111112346789999999999999999642 2233445665543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.5e-06 Score=82.64 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=86.3
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc-ccchh--hhh-hhcccCCcchhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIH--NWC-EAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~--~~~-e~~~~~p~tfDlvh~~~~~ 530 (617)
....+|||+|||+|-|+..+... +. -.+..+|. +.+++++.++.- .|.-+ .+. ......+..||++.+..+.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~--a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE--TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT--CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHH
Confidence 34678999999999999999765 11 13555553 577777766621 11111 111 1112234999999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEE
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 599 (617)
+++++.+ ...+.++-..|+|+|.||-.++.+ ..+..+..+..-+|.. .... .+.|-+
T Consensus 209 ~~Le~q~---kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~--~~~~-------~~nEl~ 276 (281)
T 3lcv_B 209 PCLETQQ---RGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRI--QRLE-------IGNELI 276 (281)
T ss_dssp HHHHHHS---TTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCE--EEEE-------ETTEEE
T ss_pred HHhhhhh---hHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCce--eeee-------ecCeeE
Confidence 9997442 234558999999999999999933 3445677777778865 3322 345666
Q ss_pred EEEEe
Q 007128 600 FIVQK 604 (617)
Q Consensus 600 l~~~K 604 (617)
.+.+|
T Consensus 277 y~i~k 281 (281)
T 3lcv_B 277 YVIQK 281 (281)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 66654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.4e-07 Score=88.93 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=58.8
Q ss_pred hhHHHhhhcchhhHhhhcCCce----EEEEeecCCC-CCceEEEeec----cc----ccchhhhhhhcc-cC------Cc
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV----WVMSVVPEDG-PNTLKLIYDR----GL----IGSIHNWCEAYS-TY------PR 519 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~----~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~~~~e~~~-~~------p~ 519 (617)
.+|||+|||+|.++..|++... -...|+.+|. +.+++.|.++ |+ ...+...+.+.. .+ +.
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 4799999999999999987531 0013455553 4565555544 21 111111111111 11 27
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+||+|++...++ .++.++.++|||||.+++.-..
T Consensus 162 ~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGASAS----------ELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEEcc
Confidence 899999866554 3568899999999999998765
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.64 E-value=6.3e-07 Score=92.01 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=58.5
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhh------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAW------ 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~------ 527 (617)
.+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+...++-.+.++..++ .+||+|.++
T Consensus 30 ~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 30 DVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQIS 106 (285)
T ss_dssp CEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGGGH
T ss_pred CEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEecCcccc
Confidence 4699999999999999998766 5666664 5777666554 22122222223333333 489999875
Q ss_pred -----hhhhhhhhcCCCcccch----hhc--cccccCcceEEE
Q 007128 528 -----TVFSDIEKRGCSGEDLL----LEM--DRILRPTGFVII 559 (617)
Q Consensus 528 -----~~~~~~~~~~c~~~~~l----~Em--~RiLrPgG~~ii 559 (617)
.++.|. .++..++ .|+ +|+|||||.++.
T Consensus 107 ~~~~~~~l~~~----~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 107 SPFVFKLLLHR----PFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp HHHHHHHHHCS----SCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred hHHHHHHHhcC----cchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 333322 2444444 455 479999999853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.2e-06 Score=91.40 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=61.0
Q ss_pred hhHHHhhhcchhhHhhhcC-C-ceEEEEeecCCC-CCceEEEeecc-c-----ccchh-hhhhhcccCC-cchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKE-K-DVWVMSVVPEDG-PNTLKLIYDRG-L-----IGSIH-NWCEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~-~-~~~v~~v~~~~~-~~~l~~~~~rg-l-----~~~~~-~~~e~~~~~p-~tfDlvh~~~ 528 (617)
.+|||+|||.|+++..|++ . ++ .|+.+|. +.+++.+.++- + +-.++ |-.+-+..++ ++||+|.++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 3799999999999999997 3 44 4555553 56666655431 1 11111 1111122343 8999998754
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.........-.-..++.++.|+|||||.+++...
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221000000125789999999999999987654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.2e-06 Score=87.61 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=61.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhccc--CC--cchhhhhhh------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYST--YP--RTYDLLHAW------ 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~--~p--~tfDlvh~~------ 527 (617)
.+|||+|||+|.++..|++++. .|+.+|. +.+++.+.++-- ...++-.+.++.. ++ .+| .|.++
T Consensus 31 ~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 31 DTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp EEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred CEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCcccc
Confidence 4699999999999999998875 6777884 678777766521 1111111222222 22 577 44432
Q ss_pred -hhhhhhhhcCCCcccch----hhccccccCcceEEEecC
Q 007128 528 -TVFSDIEKRGCSGEDLL----LEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 528 -~~~~~~~~~~c~~~~~l----~Em~RiLrPgG~~ii~~~ 562 (617)
.++.++-.+......++ .++.|+|+|||.+.+...
T Consensus 107 ~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 107 TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 22222222233555666 669999999998877553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-07 Score=90.87 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=60.4
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccC------Ccc
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTY------PRT 520 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~------p~t 520 (617)
-++|||+|||+|..+..|++. +. .|+.+|. +.+++.|.++ |+ +-.++ +..+.++.+ +++
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 357999999999999999864 44 4555553 4565555433 43 11111 222222222 378
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
||+|.++..-. +....+.++.|+|||||.+++.+
T Consensus 148 fD~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEec
Confidence 99998753222 34678999999999999999975
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.1e-06 Score=88.96 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=68.8
Q ss_pred eEEEeecccccccccccccc------------------------------------------hhhhhccCCCccchhhhH
Q 007128 216 RTVLDVGCGVASFGAYLLSS------------------------------------------DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~------------------------------------------~V~gvDis~~dl~~a~~~ 253 (617)
.+|||.+||+|.++..++.. .|+|+|+++.++..++ +
T Consensus 197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar-~ 275 (385)
T 3ldu_A 197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR-E 275 (385)
T ss_dssp SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH-H
T ss_pred CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH-H
Confidence 68999999999887766432 3889999999888887 4
Q ss_pred HHHHhCC--CcccccccccccCCCCCcccccccccccccccc---ccceEEEEecccccC--CceeeecC
Q 007128 254 FALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ---RDGILLLELDRLLRP--GGYFAYSS 316 (617)
Q Consensus 254 ~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~---~~~~~L~el~RvLrP--GG~lvis~ 316 (617)
.+...++ .+.+.+.|+.+++.+ .+||+|+++--...-.. ....+.+++.++||+ ||.+++.+
T Consensus 276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 4555566 477888899888765 58999998643211111 122355556666665 77776653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.3e-05 Score=83.61 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=63.0
Q ss_pred eeEEEeecccccccccccccc---------------------hhhhhccCCCccchhhh------HH-HHHhC--CCccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---------------------DVITMSLAPNDVHQNQI------QF-ALERG--IPAYL 264 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---------------------~V~gvDis~~dl~~a~~------~~-a~~rg--~~~~~ 264 (617)
..+|+|+||++|..+..+... .|..-|+..+|...-.. +. ..+.+ .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999777665543 12333444444322111 11 11112 12223
Q ss_pred ccc---cccccCCCCCccccccccccccccccccceEEEE--------------------e-------------------
Q 007128 265 GVL---GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE--------------------L------------------- 302 (617)
Q Consensus 265 ~~~---d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~e--------------------l------------------- 302 (617)
..+ +...-.||+++||+|+++.+ +||..+.+..+.+ +
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 33445789999999999887 7898776555543 2
Q ss_pred cccccCCceeeecChhh
Q 007128 303 DRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 303 ~RvLrPGG~lvis~p~~ 319 (617)
.+.|+|||+++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 212 SEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHEEEEEEEEEEEECC
T ss_pred HHHhccCCeEEEEEecC
Confidence 79999999999985544
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-05 Score=83.39 Aligned_cols=102 Identities=9% Similarity=-0.012 Sum_probs=67.2
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCC---Ccccccccc-
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPS---RSFELAHCS- 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~---~sFDlV~~s- 285 (617)
.+|||+|||+|..+..|++. .|+++|+++..+..++. .+.+.++ ++.+...|+..++... ++||.|++.
T Consensus 104 ~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~ 182 (309)
T 2b9e_A 104 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT-LLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP 182 (309)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred CEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence 68999999999998888763 48999999988777763 3444454 5777788887775432 479999862
Q ss_pred ----ccccccccc--------c----------ceEEEEecccccCCceeeecChhh
Q 007128 286 ----RCRIDWLQR--------D----------GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ----~~l~h~~~~--------~----------~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...+....+ . ..+|..+.++|+ ||+++.++-..
T Consensus 183 PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 183 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 111111001 0 124666777786 99998865433
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.9e-06 Score=90.85 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=70.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cccc-chhhhhhh----cccC---Ccchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIG-SIHNWCEA----YSTY---PRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~-~~~~~~e~----~~~~---p~tfDlvh~ 526 (617)
.+|||+|||+|+|+..++..+.. .|+.+|. +.+++.|.+. |+-. .+...+.+ ++.. ..+||+|.+
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 46999999999999999987651 3555553 5666655543 2211 11111111 1111 248999986
Q ss_pred hhhhh-----hhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhcccccc
Q 007128 527 WTVFS-----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 527 ~~~~~-----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w~~~ 581 (617)
+--.. +.....-++..++.+..++|+|||.+++..... ..+.++..+...+++.+
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence 32110 000000023346677789999999999987654 34456666777766644
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-06 Score=88.15 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=67.1
Q ss_pred eEEEeecccccccccccccc------------------------------------------hhhhhccCCCccchhhhH
Q 007128 216 RTVLDVGCGVASFGAYLLSS------------------------------------------DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~------------------------------------------~V~gvDis~~dl~~a~~~ 253 (617)
..|||.+||+|.++..++.. .|+|+|+++.++..++ +
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar-~ 281 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK-Q 281 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH-H
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH-H
Confidence 67999999999887665432 2889999999888887 4
Q ss_pred HHHHhCCC--cccccccccccCCCCCccccccccccccccc---cccceEEEEecccccC--CceeeecC
Q 007128 254 FALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFAYSS 316 (617)
Q Consensus 254 ~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~---~~~~~~L~el~RvLrP--GG~lvis~ 316 (617)
.+...++. +.+.++|+.+++.+ .+||+|+++--..... .....+..++.++||+ ||.+++.+
T Consensus 282 Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 45555653 77888999988876 4899999873211111 1112244445555655 77777654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2.7e-06 Score=90.77 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=69.0
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--c----cchhhhhhhcccCCcchhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--I----GSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~----~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
.+|||+|||+|+|+..++... ..|+.+|. +.+++.|.+. |+ + +...++...+..-+.+||+|.++-
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 469999999999999999863 35666664 4565555443 32 1 222222111111136899998732
Q ss_pred ---------hhhhhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhccc
Q 007128 529 ---------VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNW 578 (617)
Q Consensus 529 ---------~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w 578 (617)
++.... +...++.++.++|+|||.+++..... ..+.+++.+...+.
T Consensus 288 P~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 348 (382)
T 1wxx_A 288 PAFAKGKKDVERAYR----AYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR 348 (382)
T ss_dssp CCSCCSTTSHHHHHH----HHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCChhHHHHHHH----HHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 222122 34578999999999999999986543 23445555555543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2e-05 Score=84.43 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccC--Ccchhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTY--PRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~--p~tfDlvh~~~~~~~~~ 534 (617)
+|||+|||+|+|+.+++++ +. +|..+|. +.+++.| . .+ +-.+.++..+ +..||+|.++--|....
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~~~~---~i~gvDi~~~~~~~a-~-~~----~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~ 112 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHGTAY---RFVGVEIDPKALDLP-P-WA----EGILADFLLWEPGEAFDLILGNPPYGIVG 112 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCS---EEEEEESCTTTCCCC-T-TE----EEEESCGGGCCCSSCEEEEEECCCCCCBS
T ss_pred EEEECCCCChHHHHHHHHHhCCCC---eEEEEECCHHHHHhC-C-CC----cEEeCChhhcCccCCCCEEEECcCccCcc
Confidence 7999999999999999874 23 5666663 5666655 1 11 1111222222 27899999842221000
Q ss_pred -----------------h-------cCCC-cccchhhccccccCcceEEEecChh-----HHHHHHHhhhhccccccccc
Q 007128 535 -----------------K-------RGCS-GEDLLLEMDRILRPTGFVIIRDKQS-----VVDFVKKYLRALNWEAVATT 584 (617)
Q Consensus 535 -----------------~-------~~c~-~~~~l~Em~RiLrPgG~~ii~~~~~-----~~~~~~~~~~~~~w~~~~~~ 584 (617)
. ..-+ ....+..+.++|+|||.+++-.+.. ..+++++.+...++..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l 192 (421)
T 2ih2_A 113 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYL 192 (421)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEE
T ss_pred cccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEEC
Confidence 0 0000 1256888999999999998877665 34678888777777332121
Q ss_pred ccCCCCCCCCCCeEEEEEEe
Q 007128 585 ADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~K 604 (617)
. ..-++......+++.+|
T Consensus 193 ~--~~F~~~~~~~~il~~~k 210 (421)
T 2ih2_A 193 G--EVFPQKKVSAVVIRFQK 210 (421)
T ss_dssp E--SCSTTCCCCEEEEEEES
T ss_pred C--CCCCCCCccEEEEEEEe
Confidence 1 11122334556777777
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.3e-06 Score=81.48 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=84.8
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-ccchh--hhhh-hcccCCcchhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IGSIH--NWCE-AYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~--~~~e-~~~~~p~tfDlvh~~~~~~ 531 (617)
..-.+|||+|||+|-|+..+. .+. .+...|. +.|++++.++.- .|.-+ ..+. .-...|.+||+|.+..+.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 456689999999999999877 332 3555553 577777766631 11111 1111 1233459999999887777
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh-----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVF 600 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l 600 (617)
+++..+ ...+.++-.-|+|+|.||--++.+ ..+..+..+..-.|.+ .... .+.|.+.
T Consensus 180 ~LE~q~---~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~--~~~~-------~~nEl~~ 247 (253)
T 3frh_A 180 LLEREQ---AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIE--DKKT-------IGTELIY 247 (253)
T ss_dssp HHHHHS---TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEE--EEEE-------ETTEEEE
T ss_pred Hhhhhc---hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhh--hhee-------cCceEEE
Confidence 776332 224446777999999999888443 3344666666677766 3332 4568888
Q ss_pred EEEec
Q 007128 601 IVQKK 605 (617)
Q Consensus 601 ~~~K~ 605 (617)
+.+|.
T Consensus 248 ~i~~~ 252 (253)
T 3frh_A 248 LIKKN 252 (253)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 88773
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.9e-06 Score=91.77 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=76.9
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----------------------hhhhhccCCCccchh
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----------------------DVITMSLAPNDVHQN 250 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----------------------~V~gvDis~~dl~~a 250 (617)
...+.+.+++.. .. +.+|||.+||+|.++..+++. .++|+|+++.++..+
T Consensus 156 ~iv~~mv~~l~p------~~--~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 156 PLIKTIIHLLKP------QP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp HHHHHHHHHHCC------CT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhcc------CC--CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 345566666653 22 368999999999887665432 478888888776666
Q ss_pred hhHHHHHhCCC------cccccccccccC-CCCCccccccccccccccccc-------------cceEEEEecccccCCc
Q 007128 251 QIQFALERGIP------AYLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQR-------------DGILLLELDRLLRPGG 310 (617)
Q Consensus 251 ~~~~a~~rg~~------~~~~~~d~~~lp-f~~~sFDlV~~s~~l~h~~~~-------------~~~~L~el~RvLrPGG 310 (617)
+..... +++. ..+..+|+...+ .....||+|+++--+...... ...++..+.+.|+|||
T Consensus 228 ~~nl~l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 228 LMNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp HHHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHH-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 543332 3443 456667765443 345689999986432111000 0136778899999999
Q ss_pred eeeecChhhh
Q 007128 311 YFAYSSPEAY 320 (617)
Q Consensus 311 ~lvis~p~~~ 320 (617)
++++..|...
T Consensus 307 r~a~V~p~~~ 316 (541)
T 2ar0_A 307 RAAVVVPDNV 316 (541)
T ss_dssp EEEEEEEHHH
T ss_pred EEEEEecCcc
Confidence 9999877653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.49 E-value=1.4e-06 Score=93.39 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=68.3
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhh----cccC---Ccchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEA----YSTY---PRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~----~~~~---p~tfDlvh~ 526 (617)
.+|||+|||+|+|+..++..+. ..|+.+|. +.+++.|.++ |+ -..+...+.+ ++.+ +.+||+|.+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 3699999999999999998863 14555553 4555444332 22 1111111111 1111 368999987
Q ss_pred hhhhh-----hhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhccc
Q 007128 527 WTVFS-----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNW 578 (617)
Q Consensus 527 ~~~~~-----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w 578 (617)
+--+. ++.....+...++.++.++|+|||.++++.... ..+.+++.+...++
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 52210 011111245578889999999999999866543 33445555555553
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.46 E-value=1.4e-05 Score=85.49 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred eEEEeecccccccccccccc------------------------------------------hhhhhccCCCccchhhhH
Q 007128 216 RTVLDVGCGVASFGAYLLSS------------------------------------------DVITMSLAPNDVHQNQIQ 253 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~------------------------------------------~V~gvDis~~dl~~a~~~ 253 (617)
..|||.+||+|.++...+.. .|+|+|+++.++..++ +
T Consensus 196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar-~ 274 (384)
T 3ldg_A 196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR-K 274 (384)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH-H
T ss_pred CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH-H
Confidence 68999999999887665431 2889999998888887 4
Q ss_pred HHHHhCCC--cccccccccccCCCCCccccccccccccccc---cccceEEEEecccccC--CceeeecCh
Q 007128 254 FALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFAYSSP 317 (617)
Q Consensus 254 ~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~---~~~~~~L~el~RvLrP--GG~lvis~p 317 (617)
.+...++. +.+.+.|+.+++.+ .+||+|+++--.-.-. .+...+..++.+.||+ ||.+++.++
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 55556653 67888899988876 4899999873211111 1112344455566665 887777544
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.45 E-value=3.2e-05 Score=79.19 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=54.2
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--h----hhhhccCCCccchhhhHHHHHhCCCccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--D----VITMSLAPNDVHQNQIQFALERGIPAYLGV 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~----V~gvDis~~dl~~a~~~~a~~rg~~~~~~~ 266 (617)
...+.+.+.+.. ..+ .+|||||||+|.++..|++. . |+++|+++.++..++.+ + ..++.+..
T Consensus 29 ~i~~~iv~~~~~------~~~--~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~ 96 (279)
T 3uzu_A 29 GVIDAIVAAIRP------ERG--ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHA 96 (279)
T ss_dssp HHHHHHHHHHCC------CTT--CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEE
T ss_pred HHHHHHHHhcCC------CCc--CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEE
Confidence 455667777765 333 68999999999999999875 4 99999999887776644 2 34577888
Q ss_pred ccccccCCCC
Q 007128 267 LGTKRLPYPS 276 (617)
Q Consensus 267 ~d~~~lpf~~ 276 (617)
+|+..+++++
T Consensus 97 ~D~~~~~~~~ 106 (279)
T 3uzu_A 97 GDALTFDFGS 106 (279)
T ss_dssp SCGGGCCGGG
T ss_pred CChhcCChhH
Confidence 8988888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 617 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.003 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
Query: 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP 275
R VLD+ CG L + L ++ + + + G
Sbjct: 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 276 SRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEM 333
F+ I + + + L ++ L+PGG F P + + +W E
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQ 162
Query: 334 SALVERMCWR 343
+ +
Sbjct: 163 KGEEKLVIMD 172
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 0.003
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 1/102 (0%)
Query: 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYP 275
+L+VG G + +Y+L + +L + ++ ++ A++ Y
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 276 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317
+ D + ++ +++PG + P
Sbjct: 147 ADFISDQMYDAVIADIPDPWNH-VQKIASMMKPGSVATFYLP 187
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.6 bits (86), Expect = 0.003
Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 200 NMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERG 259
+ ++F + + + ++D GCG G L+ D + + A E
Sbjct: 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 72
Query: 260 IPAYLGVLGTKRLPYPSRSFELAHCSRCR--IDWLQRDGILLLELDRLLRPGGYFAYSSP 317
+ + + C + + +L ++ ++ GG P
Sbjct: 73 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132
Query: 318 EAYAQDEEDLRIWKEMSALVERMCWR 343
+ L ++ S ++ +
Sbjct: 133 HWISNMASYLLDGEKQSEFIQLGVLQ 158
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.66 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.54 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.53 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.52 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.49 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.49 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.44 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.4 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.36 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.36 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.34 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.34 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.34 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.34 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.29 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.28 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.27 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.27 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.27 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.25 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.25 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.25 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.24 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.24 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.22 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.2 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.19 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.18 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.17 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.17 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.17 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.17 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.15 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.15 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.13 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.12 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.12 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.11 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.1 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.1 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.09 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.08 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.08 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.08 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.05 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.04 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.02 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.02 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.01 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.98 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.97 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.95 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.95 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.91 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.9 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.86 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.85 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.85 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.84 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.84 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.84 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.82 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.82 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.82 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.8 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.8 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.79 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.78 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.78 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.76 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.74 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.71 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.7 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.66 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.61 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.59 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.59 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.54 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.51 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.5 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.49 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.46 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.43 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.38 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.33 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.33 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.32 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.32 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.3 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.29 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.27 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.26 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.25 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.2 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.15 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.06 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.05 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.01 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.98 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.98 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.94 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.92 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.92 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.89 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.85 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.74 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.74 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.73 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.71 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.71 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.71 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.67 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.62 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.59 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.58 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.51 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.37 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.37 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.36 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.34 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.33 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.22 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.21 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.21 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.2 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.18 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.15 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.07 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.93 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 96.93 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.88 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.83 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.8 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.79 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.78 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.73 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.73 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.71 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.7 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.67 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.66 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.49 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 96.47 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 96.41 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.41 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.17 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 96.13 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 96.12 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.12 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.76 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 95.74 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 95.62 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.47 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 95.08 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.94 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.69 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 94.48 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.46 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 94.37 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 94.29 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 94.27 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 94.17 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 94.13 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 93.92 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 93.46 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 93.35 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.33 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 93.15 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 93.09 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 92.83 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 92.67 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 92.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 92.26 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 90.84 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 90.13 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 90.03 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 89.77 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 89.23 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 87.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 86.61 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 86.28 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 85.57 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 82.57 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 82.38 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 81.43 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.66 E-value=3.7e-18 Score=166.73 Aligned_cols=113 Identities=14% Similarity=0.237 Sum_probs=91.4
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccC
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP 273 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp 273 (617)
..+.+.+++ +++ .+|||||||+|.++..|++. .|+|+|+++.+++.|+.........++.+.++|.+.+|
T Consensus 5 ~~ll~~~~l------~~~--~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 5 AKLMQIAAL------KGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76 (231)
T ss_dssp HHHHHHHTC------CSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC
T ss_pred HHHHHhcCC------CCc--CEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccc
Confidence 445566665 333 68999999999999999876 59999999999888875444444456889999999999
Q ss_pred CCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 274 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 274 f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++++||+|+|..++ ||.+++..+|+++.|+|||||++++.++
T Consensus 77 ~~~~~fD~v~~~~~l-~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAA-HHFPNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp SCTTCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccc-cccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999999999999885 5556667899999999999999999653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.7e-17 Score=163.16 Aligned_cols=115 Identities=19% Similarity=0.336 Sum_probs=95.2
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~ 269 (617)
++.+.+.+.+.+ +++ .+|||||||+|.++..|+++ .|+|+|+|+.++..|+ +.+...++ ++.+.++|+
T Consensus 3 ~~~~~l~~~~~~------~~~--~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~ 73 (234)
T d1xxla_ 3 HSLGLMIKTAEC------RAE--HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTA 73 (234)
T ss_dssp HHHHHHHHHHTC------CTT--CEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBT
T ss_pred hHHHHHHHHhCC------CCC--CEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhccccccccccccccc
Confidence 345667777776 444 79999999999999999886 6999999999988887 44555554 588899999
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+.+||++++||+|+|..++ ||..++..+|+++.|+|||||+++++..
T Consensus 74 ~~~~~~~~~fD~v~~~~~l-~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 74 ESLPFPDDSFDIITCRYAA-HHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp TBCCSCTTCEEEEEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccceeeeecee-ecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 9999999999999999885 5556668899999999999999998643
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.7e-16 Score=153.82 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--ccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~ 266 (617)
....+.+.+.+.+ .++ .+|||||||+|.++..|++. .|+|+|+|+.+++.++ +.+.+.++. +.+..
T Consensus 19 ~~~~~~l~~~~~l------~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 19 EEKYATLGRVLRM------KPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIH 89 (245)
T ss_dssp HHHHHHHHHHTCC------CTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHcCC------CCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhh
Confidence 3455678888877 444 78999999999999988764 5899999998888776 455566654 68888
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChh
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+|+..+ +++++||+|+|..++.| ..+...+++++.|+|||||++++..+.
T Consensus 90 ~d~~~~-~~~~~fD~v~~~~~~~~-~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 90 NDAAGY-VANEKCDVAACVGATWI-AGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp SCCTTC-CCSSCEEEEEEESCGGG-TSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hHHhhc-cccCceeEEEEEehhhc-cCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 999887 46789999999988655 455678999999999999999997543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.53 E-value=3.4e-16 Score=158.18 Aligned_cols=101 Identities=18% Similarity=0.340 Sum_probs=85.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++..|+++ .|+|+|+++.++..++ +.+...++ ++.+..+|+.++|+++++||+|+|..+++
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~-~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 146 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL 146 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhh-cccccccccccccccccccccccccccccchhhccchhh
Confidence 479999999999999999875 5899999998888777 44445555 47788999999999999999999998866
Q ss_pred ccccccceEEEEecccccCCceeeecCh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
|+ .++..+|+++.|+|||||+|++.++
T Consensus 147 h~-~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 147 HS-PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 65 4557899999999999999999754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2.2e-16 Score=152.66 Aligned_cols=102 Identities=20% Similarity=0.394 Sum_probs=85.8
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||||||+|.++..|++. .|+|+|+|+.++..++ +.+...+..+.+..+|+..+|+++++||+|+|..++.|+..
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~ 117 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 117 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred CEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecchhhCCh
Confidence 58999999999999999876 5899999999988887 45555567778888899999999999999999998666532
Q ss_pred -ccceEEEEecccccCCceeeecChh
Q 007128 294 -RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 294 -~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+...+|+++.|+|||||++++..+.
T Consensus 118 ~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 118 LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 4456999999999999999987543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=4.3e-16 Score=149.76 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=91.0
Q ss_pred eEEEeecccccccccccccchhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 295 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~ 295 (617)
.+|||||||+|.++..+.+ ++|+|+|+.++. .++++ ++.+.++|++++|+++++||+|+|..+++|. +++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~--~~giD~s~~~~~-----~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI--KIGVEPSERMAE-----IARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFV-DDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC--CEEEESCHHHHH-----HHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCH
T ss_pred CeEEEECCCCcccccccce--EEEEeCChhhcc-----ccccc--ccccccccccccccccccccccccccccccc-ccc
Confidence 3799999999999888853 688988876554 44455 3567888999999999999999999986554 566
Q ss_pred ceEEEEecccccCCceeeecChhhhcCCHHH-HHH--------------HHHHHHHHHHhhhhhhh
Q 007128 296 GILLLELDRLLRPGGYFAYSSPEAYAQDEED-LRI--------------WKEMSALVERMCWRIAA 346 (617)
Q Consensus 296 ~~~L~el~RvLrPGG~lvis~p~~~~~~~~~-~~~--------------w~~l~~l~~~~gf~~v~ 346 (617)
..+|+++.|+|+|||++++..+......... ... -+++.++++++||+.+.
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999865442111000 000 06788999999997654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.4e-16 Score=153.75 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=100.0
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
+..+|||||||+|.++..|+.. .|+++|+|+.++..|+.........++.+.++|++.+++++++||+|+|..+++|
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 3468999999999999887654 5899999999988887544443333567889999999999999999999998666
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhhcC------CHHHHHHHHHHHHHHHHhhhhhhhcc
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAYAQ------DEEDLRIWKEMSALVERMCWRIAAKR 348 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~~------~~~~~~~w~~l~~l~~~~gf~~v~~~ 348 (617)
+.++. ..+|+++.++|||||.++++.+..... ........+.+.++++++||+++..+
T Consensus 140 ~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 140 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred chhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 54331 369999999999999999974332110 00000012678899999999876543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=1.5e-15 Score=148.64 Aligned_cols=98 Identities=21% Similarity=0.390 Sum_probs=80.4
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 293 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~ 293 (617)
.+|||+|||+|.++..|++. .|+|+|+|+.++ +.|++++.. .+..++++++|+++++||+|+|...++||.+
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l-----~~a~~~~~~-~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CEEEEECCCCchhcccccccceEEEEeecccccc-----ccccccccc-ccccccccccccccccccceeeecchhhhhh
Confidence 58999999999999999886 488998887655 445555543 3556889999999999999998665567777
Q ss_pred ccceEEEEecccccCCceeeecChhh
Q 007128 294 RDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 294 ~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
++..+|+++.|+|||||+++++.++.
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 77789999999999999999987654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.1e-15 Score=151.65 Aligned_cols=94 Identities=21% Similarity=0.400 Sum_probs=76.7
Q ss_pred ceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+..+|||||||+|.++..|++. .++|+|+|+.++ +.|+++..++.+.++|+.++|+++++||+|++..+..
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-----~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-----hhhhcccccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 3468999999999999998875 467888877554 4556666778899999999999999999999876533
Q ss_pred ccccccceEEEEecccccCCceeeecChhhh
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSSPEAY 320 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~p~~~ 320 (617)
+ ++|+.|+|||||++++++|...
T Consensus 159 ~--------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 159 K--------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp C--------HHHHHHHEEEEEEEEEEEECTT
T ss_pred H--------HHHHHHHhCCCcEEEEEeeCCc
Confidence 2 4689999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=8.1e-15 Score=144.38 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=84.5
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||||||+|.++..|++. .|+|+|+|+.|++.|+. .+.+.+.++.+.++|++.++++ ++||+|+|....+++.
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~ 119 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-cccchHhhhhhhhhcC
Confidence 468999999999999999876 59999999999988874 4556777889999999999988 5899999976545554
Q ss_pred c--ccceEEEEecccccCCceeeecChh
Q 007128 293 Q--RDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 293 ~--~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
. +...+|++++++|||||++++..+.
T Consensus 120 ~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 120 DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 2 3346999999999999999997543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.36 E-value=3.5e-14 Score=140.02 Aligned_cols=100 Identities=17% Similarity=0.350 Sum_probs=81.4
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
..+|||||||+|.++..|+++ .|+|+|+|+.|+..|+ +.+...+.++.+.++|+..++++ ++||+|+|....+++.
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred CCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceeeeeeecc
Confidence 358999999999999999987 4999999999998887 44556678899999999988865 6899999864334333
Q ss_pred ---cccceEEEEecccccCCceeeecC
Q 007128 293 ---QRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 293 ---~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+...+|++++++|+|||.|++..
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 233569999999999999999854
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.36 E-value=9.5e-15 Score=142.64 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=91.9
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|.++..|++. .|+|+|+++.+++.++ ++ ..++.+..++.+.+++ +++||+|+|..++. |.
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~-----~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vle-h~ 94 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQ-----GRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLE-HI 94 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHH-----HHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGG-GC
T ss_pred CcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhh-----ccccccccccccccccccc-ccccccccccceeE-ec
Confidence 47999999999999999876 5899988886665544 33 2246677778888776 47999999998855 55
Q ss_pred cccceEEEEec-ccccCCceeeecChhhhcCC-----------------HHHH-------HHHHHHHHHHHHhhhhhhhc
Q 007128 293 QRDGILLLELD-RLLRPGGYFAYSSPEAYAQD-----------------EEDL-------RIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 293 ~~~~~~L~el~-RvLrPGG~lvis~p~~~~~~-----------------~~~~-------~~w~~l~~l~~~~gf~~v~~ 347 (617)
+++..+|.++. |+|+|||+++++.|+..... .... ..++++++++.+.||+++..
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 66678899997 89999999999876432110 0000 01267899999999987653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.34 E-value=8.8e-15 Score=146.06 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=96.0
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
...+|||+|||+|.++..|+.. .|+++|+++.+++.|+.+... ...+.+.+.+++.+++++++||+|+|..+++|
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--cccceeEEccccccccCCCccceEEeeccccc
Confidence 3468999999999999988754 588999999888776633221 12367788899999999999999999998766
Q ss_pred cccc-cceEEEEecccccCCceeeecChhhhc-------CCHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 291 WLQR-DGILLLELDRLLRPGGYFAYSSPEAYA-------QDEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 291 ~~~~-~~~~L~el~RvLrPGG~lvis~p~~~~-------~~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+.++ ...+|+++.++|+|||++++..+.... .+....+..+.+.++++++||+++..
T Consensus 171 l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 6443 246899999999999999996432211 00000011257888999999977653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=2.4e-14 Score=137.36 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=86.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCCC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGCS 539 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~ 539 (617)
+|||+|||+|.++..|.+ ++.+| +++|++.+.+|++ -.+....+.++..+++||+|+|..++.|+. +
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~----d 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD----D 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS----C
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc----c
Confidence 599999999999999975 23445 3689999988875 223344455554459999999999999987 7
Q ss_pred cccchhhccccccCcceEEEecChh------------------------HHHHHHHhhhhcccccc
Q 007128 540 GEDLLLEMDRILRPTGFVIIRDKQS------------------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 540 ~~~~l~Em~RiLrPgG~~ii~~~~~------------------------~~~~~~~~~~~~~w~~~ 581 (617)
+..+|.|+.|+|||||.++|.++.. ..+++.+++++.+++.+
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 8999999999999999999987632 24578888998888765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.34 E-value=4.3e-14 Score=137.66 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred eEEEeecccccccccccccc------hhhhhccCCCccchhhhHHHHHh-CCCcccccccccccCCCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS------DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~------~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.+|||||||+|..+..|++. .|+|+|+|+.|+..|+.+.+... ...+.+...|... ++.+.||+|+|+.++
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--VEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--CCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--cccccceeeEEeeec
Confidence 58999999999988877642 58999999999988875443322 2234444555544 455679999998875
Q ss_pred cccc-cccceEEEEecccccCCceeeecCh
Q 007128 289 IDWL-QRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 289 ~h~~-~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
+++. ++...+|++++|+|||||.+++.++
T Consensus 119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 4443 2345799999999999999999743
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.34 E-value=3e-14 Score=144.01 Aligned_cols=102 Identities=12% Similarity=0.222 Sum_probs=83.5
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
++.+|||||||+|.++..|++. .|+|+|+++.++..++ +.....+.++.+.+.|+..++++ ++||+|+|..++
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-ccccccccccccccccccccccc-CCceEEEEehhh
Confidence 3468999999999998887652 4899999998888776 34445566788889999999886 579999999885
Q ss_pred cccccccceEEEEecccccCCceeeecChh
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+ +.+++..+|+++.++|||||++++.++.
T Consensus 105 ~-~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 105 L-HMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp G-GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred h-cCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 4 5556678999999999999999987654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=6.2e-14 Score=142.56 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhC
Q 007128 183 GGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERG 259 (617)
Q Consensus 183 g~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg 259 (617)
+.......-..-.+.+.+.+.+ .++ .+|||||||.|.++.++++. .|+|+++|+..+..++ +.+.+.+
T Consensus 38 ~~~tL~~Aq~~k~~~~~~~l~l------~~G--~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~ 108 (291)
T d1kpia_ 38 PDMTLEEAQYAKRKLALDKLNL------EPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVD 108 (291)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCC------CTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHhcCC------CCC--CEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhc
Confidence 3333444334444556666665 444 79999999999999999865 5888988887766665 3444555
Q ss_pred CCcccccccccccCCCCCccccccccccccccccc--------cceEEEEecccccCCceeeecC
Q 007128 260 IPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 260 ~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~--------~~~~L~el~RvLrPGG~lvis~ 316 (617)
+...+. ....+.++++++||.|+|..++.|+.+. ...+++++.|+|||||++++.+
T Consensus 109 l~~~v~-~~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 109 SPRRKE-VRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CSSCEE-EEECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cchhhh-hhhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 543222 1223345667899999999988777542 2468999999999999999854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.6e-14 Score=138.73 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=90.0
Q ss_pred CCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcc-------------------------
Q 007128 212 EGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAY------------------------- 263 (617)
Q Consensus 212 ~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~------------------------- 263 (617)
..++.+|||||||+|.++..++.. .|+|+|+|+.++..++.+... ......
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 345689999999999988777654 599999999998887744322 211110
Q ss_pred ----------cccccccccCCCCCcccccccccccccccc---ccceEEEEecccccCCceeeecChhhhcC---CHH--
Q 007128 264 ----------LGVLGTKRLPYPSRSFELAHCSRCRIDWLQ---RDGILLLELDRLLRPGGYFAYSSPEAYAQ---DEE-- 325 (617)
Q Consensus 264 ----------~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~---~~~~~L~el~RvLrPGG~lvis~p~~~~~---~~~-- 325 (617)
....+....++++++||+|++..+++|... +...+++++.|+|||||+++++++..... ...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~ 207 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 207 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence 011122334678899999999998766543 33468999999999999999975432100 000
Q ss_pred --HHHHHHHHHHHHHHhhhhhhh
Q 007128 326 --DLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 326 --~~~~w~~l~~l~~~~gf~~v~ 346 (617)
..-..+++.++++.+||+++.
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEEE
Confidence 000026788999999997654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1e-13 Score=135.35 Aligned_cols=94 Identities=22% Similarity=0.429 Sum_probs=75.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeecccccchhhhhhhcccCC-cchhhhhh-hhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHA-WTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~-~~~~~~~~~~~ 537 (617)
+|||+|||+|.++..|++++. .|+.+| ++.|++.|.+++..-.+..-.++++ |+ ++||+|.| ..+++|+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~~--- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE--- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS---
T ss_pred EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhhh---
Confidence 599999999999999999987 455566 3689999999886322222234454 44 99999997 57899887
Q ss_pred CCcccchhhccccccCcceEEEecC
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|+..+|.|+.|+|||||.++|..+
T Consensus 118 -d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 -NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 788999999999999999999865
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.2e-13 Score=138.73 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=75.3
Q ss_pred CCCceeEEEeecccccccccccccc----------hhhhhccCCCccchhhhHHHHHhCCC---ccccccccc------c
Q 007128 211 NEGRLRTVLDVGCGVASFGAYLLSS----------DVITMSLAPNDVHQNQIQFALERGIP---AYLGVLGTK------R 271 (617)
Q Consensus 211 ~~~~~~~VLDVGCG~G~~~~~L~~~----------~V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~~------~ 271 (617)
...+..+|||||||+|.++..|++. .++++|+++.++..+..+.+....+. ..+...+++ .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 3444568999999999988777543 36788888888777764443322221 222232222 2
Q ss_pred cCCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 272 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 272 lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.++++++||+|+|.+++ ||.+++..+|+++.++|+|||+++++.+
T Consensus 117 ~~~~~~~fD~I~~~~~l-~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQML-YYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp TSSSCCCEEEEEEESCG-GGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCCceeEEEEccce-ecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 35678999999999985 5556667899999999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=8.7e-14 Score=132.90 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=80.1
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCCCccccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPSRSFELAHCSRCRIDWL 292 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~ 292 (617)
.+|||||||+|..+..|+++ .|+++|+|+.+++.++. .+.+.+++ +.+...|...+++ +++||+|+|..+++|..
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 37999999999999999987 58999999999888774 44455554 5777788888876 57899999998865543
Q ss_pred cc-cceEEEEecccccCCceeeecCh
Q 007128 293 QR-DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 293 ~~-~~~~L~el~RvLrPGG~lvis~p 317 (617)
.. ...+++++.++|+|||++++..+
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 32 23599999999999999999643
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=2.9e-13 Score=136.88 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=73.2
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCc--ccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPA--YLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~--~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
+.+|||||||+|.++.++++. .|+|+|+|+..+..++ +.+.+.+++. .+...|...+ +++||.|++..++.
T Consensus 53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~e 128 (280)
T d2fk8a1 53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFE 128 (280)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGG
T ss_pred CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHH
Confidence 379999999999999988865 5899999988777666 3444555543 3333343333 46899999999877
Q ss_pred ccccc-cceEEEEecccccCCceeeec
Q 007128 290 DWLQR-DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 290 h~~~~-~~~~L~el~RvLrPGG~lvis 315 (617)
|+... ...+|+++.|+|||||.+++.
T Consensus 129 h~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 129 HFGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred HhhhhhHHHHHHHHHhccCCCceEEEE
Confidence 76433 256899999999999999985
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=9.2e-14 Score=138.57 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=99.5
Q ss_pred CccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCC
Q 007128 184 GTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIP 261 (617)
Q Consensus 184 ~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~ 261 (617)
+..|..+...-.+.+.+.+.. ...++.+|||+|||+|.++..+++. .|+|+|+++.++..++ +.+..++++
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~------~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~ 168 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALAR------HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVR 168 (254)
T ss_dssp C-----CCSHHHHHHHHHHHH------HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCC
T ss_pred ccccCccccchhhHHHHHHHh------hcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCc
Confidence 344655555555555555543 1223469999999999988877664 5999999999998887 567777888
Q ss_pred cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 262 AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 262 ~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
..+.++|... .+++++||+|+++.. .+. ...++.++.++|||||++++++.... . -+.+.+.+++.|
T Consensus 169 ~~~~~~d~~~-~~~~~~fD~V~ani~-~~~---l~~l~~~~~~~LkpGG~lilSgil~~----~----~~~v~~~~~~~G 235 (254)
T d2nxca1 169 PRFLEGSLEA-ALPFGPFDLLVANLY-AEL---HAALAPRYREALVPGGRALLTGILKD----R----APLVREAMAGAG 235 (254)
T ss_dssp CEEEESCHHH-HGGGCCEEEEEEECC-HHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----G----HHHHHHHHHHTT
T ss_pred eeEEeccccc-cccccccchhhhccc-ccc---HHHHHHHHHHhcCCCcEEEEEecchh----h----HHHHHHHHHHCC
Confidence 8888777654 356679999997643 222 23477889999999999999754321 1 146777888899
Q ss_pred hhhhh
Q 007128 342 WRIAA 346 (617)
Q Consensus 342 f~~v~ 346 (617)
|+.+.
T Consensus 236 f~~~~ 240 (254)
T d2nxca1 236 FRPLE 240 (254)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 97654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.25 E-value=1.1e-13 Score=137.12 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH-hCCCcccccccccccCC-CCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE-RGIPAYLGVLGTKRLPY-PSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~-rg~~~~~~~~d~~~lpf-~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|..+..+++. .|+|+|+|+.++..|+.+.... ...++.+.++|+...++ .+++||+|+|..+++|
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~ 105 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHY 105 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGG
T ss_pred CEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceeee
Confidence 68999999999988888765 4899999999988877433221 22357788889877776 4678999999988666
Q ss_pred cccc---cceEEEEecccccCCceeeecChhh
Q 007128 291 WLQR---DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 291 ~~~~---~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
...+ ...+|.++.|+|||||+|+++.+..
T Consensus 106 ~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 106 AFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 5443 2358999999999999999986643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.9e-13 Score=131.63 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=93.6
Q ss_pred hhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 191 ADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 191 a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
...|.+.+.+.+.. . +.+|||||||+|.++..+++. .|+++|+++.+++.++. .+.+.+..+.+...
T Consensus 39 ~~~~~~~la~~~~~------~---g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~-~~~~~~~~~~~~~~ 108 (229)
T d1zx0a1 39 ETPYMHALAAAASS------K---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKG 108 (229)
T ss_dssp GHHHHHHHHHHHTT------T---CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEES
T ss_pred HHHHHHHHHHhhcc------C---CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHH-Hhhhcccccccccc
Confidence 34566666666543 2 368999999999999988764 58999999988887763 34444444444444
Q ss_pred ccc--ccCCCCCcccccc-----ccccccccccccceEEEEecccccCCceeeecChhhhc-----CCHHHHHHH-HHHH
Q 007128 268 GTK--RLPYPSRSFELAH-----CSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYA-----QDEEDLRIW-KEMS 334 (617)
Q Consensus 268 d~~--~lpf~~~sFDlV~-----~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~-----~~~~~~~~w-~~l~ 334 (617)
+.. ..++++++||.|+ +...+.|+ .+...+++++.|+|||||+|++....... ........+ +.+.
T Consensus 109 ~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (229)
T d1zx0a1 109 LWEDVAPTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV 187 (229)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred cccccccccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHH
Confidence 433 3456778887775 34444443 34467999999999999999885433211 001111122 4455
Q ss_pred HHHHHhhhhhhhc
Q 007128 335 ALVERMCWRIAAK 347 (617)
Q Consensus 335 ~l~~~~gf~~v~~ 347 (617)
..+.+.||+....
T Consensus 188 ~~l~~agF~~~~i 200 (229)
T d1zx0a1 188 PALLEAGFRRENI 200 (229)
T ss_dssp HHHHHTTCCGGGE
T ss_pred HHHHHCCCeeEEE
Confidence 6667788865543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.3e-13 Score=132.21 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=88.8
Q ss_pred hhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc---ccchhhhh---hhcccCCcchhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWC---EAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~---e~~~~~p~tfDlvh~~~~~~ 531 (617)
-..|||+|||+|.++..|+.+... .|+.+|. ++|++.|.++.- ...++..| +.++.-+++||+|++..++.
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 356999999999999998766442 4666674 689888876632 12222222 33442249999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecChh---------------HHHHHHHhhhhcccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------~~~~~~~~~~~~~w~~~ 581 (617)
|+... ++..+|.++.|+|||||.++|.+... ..++++++++..+++.+
T Consensus 139 h~~~~--~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 139 HLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cchhh--hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEE
Confidence 98632 35689999999999999999986643 36789999999999986
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=7.1e-14 Score=136.80 Aligned_cols=94 Identities=16% Similarity=0.287 Sum_probs=73.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
.|||+|||+|.++..|++++. +|+.+|. ++|++.|.++ |+ +..+..-.+.++ +| ++||+|+|..+|.|
T Consensus 19 rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 94 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAAHH 94 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCGGG
T ss_pred EEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeeeeceeec
Confidence 599999999999999999876 6777774 6888777655 22 222222223333 44 99999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. ++..+|.|+.|+|||||++++.+.
T Consensus 95 ~~----d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 95 FS----DVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc----CHHHHHHHHHHeeCCCcEEEEEEc
Confidence 76 889999999999999999999754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.20 E-value=1.8e-13 Score=137.81 Aligned_cols=97 Identities=24% Similarity=0.239 Sum_probs=73.8
Q ss_pred hhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCC-cchhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYP-RTYDLLHAWT 528 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p-~tfDlvh~~~ 528 (617)
-.+|||+|||+|+++..|+++ +. +|+.+|. +.|++.|.++ |+ +..++.-.+.++ +| ++||+|+|..
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~~ 143 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQD 143 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhccc
Confidence 347999999999999999986 55 4566663 5777766665 44 222222223344 44 9999999999
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|.|+. ++..+|.|+.|+|||||+|++.+..
T Consensus 144 ~l~h~~----d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 144 AFLHSP----DKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp CGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhcc----CHHHHHHHHHHhcCCCcEEEEEEee
Confidence 999887 7899999999999999999998753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.19 E-value=6.3e-14 Score=136.12 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=72.6
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeec----cc--ccchhhhhhhcccCC-cchhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDR----GL--IGSIHNWCEAYSTYP-RTYDLLHAWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~r----gl--~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~ 532 (617)
+|||+|||+|.++..|++++. +|+.+| +++|++.|.++ |. +..++.-.+.++ +| ++||+|+|..++.|
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l~~ 93 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAAHH 93 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCGGG
T ss_pred EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccccccccccccc
Confidence 599999999999999999887 456666 36787776544 22 222222234444 44 99999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+. |++.+|.|+.|+|||||+++|.+.
T Consensus 94 ~~----d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 94 FP----NPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC----CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 87 889999999999999999999754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=2e-13 Score=131.40 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=73.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----c-ccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----L-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
+|||||||+|.++..|++.+. +|+++|. ++|++.|.++- . +-.+..-.+.++..+++||+|+|..++.|+.
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 599999999999999999987 5677774 68988887652 2 1111111223332239999999999999875
Q ss_pred hcCCCcccchhhccccccCcceEEEecCh
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.. ++..+|.|+.|+|||||.++|....
T Consensus 117 ~~--d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 117 PL--ELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hh--HHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 22 5778999999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.17 E-value=7.4e-13 Score=130.03 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=78.8
Q ss_pred HHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchh-hhhhhc
Q 007128 441 NRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIH-NWCEAY 514 (617)
Q Consensus 441 ~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~-~~~e~~ 514 (617)
..+..+.+++.. .......+|||+|||+|.++..|++++. +|+.+|. ++|++.|.++. +-..++ .-.+.+
T Consensus 25 ~~~~~~~~~~~~-~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l 100 (251)
T d1wzna1 25 AEIDFVEEIFKE-DAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI 100 (251)
T ss_dssp HHHHHHHHHHHH-TCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC
T ss_pred HHHHHHHHHHHH-hcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhc
Confidence 333334444433 2334456799999999999999999987 6777774 68998887763 311111 112334
Q ss_pred ccCCcchhhhhhh-hhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 515 STYPRTYDLLHAW-TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 515 ~~~p~tfDlvh~~-~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
+ ++++||+|.|. .+|.|+.. .++..+|.++.|+|||||+++|.
T Consensus 101 ~-~~~~fD~I~~~~~~~~~~~~--~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 101 A-FKNEFDAVTMFFSTIMYFDE--EDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp C-CCSCEEEEEECSSGGGGSCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-cccccchHhhhhhhhhcCCh--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 45899999974 68887632 26778999999999999999884
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.17 E-value=1.4e-12 Score=124.22 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=91.8
Q ss_pred eCceeecCCCCccccCch-hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchh
Q 007128 174 KGEKIIFPGGGTHFHYGA-DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQN 250 (617)
Q Consensus 174 ~~~~~~Fpgg~~~F~~~a-~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a 250 (617)
.|..+.|......|.... +.-.+.+.+.+.. .. ..+|||+|||+|.++..+++. .|+++|+++.++..+
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~------~~--~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a 90 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVV------DK--DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLA 90 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC------CT--TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc------CC--CCeEEEEeecCChhHHHHHhhccccceeeeccccchhH
Confidence 466666644444554432 2223445666654 33 368999999999999988875 599999999888877
Q ss_pred hhHHHHHhCC---CcccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 251 QIQFALERGI---PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 251 ~~~~a~~rg~---~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+... ...++ ++.+...|... ++++++||+|+|+..+++..+....+++++.++|+|||.+++..
T Consensus 91 ~~n~-~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 91 KENI-KLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp HHHH-HHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHH-HHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 7443 33333 35666677655 56788999999887643333323568999999999999998753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.17 E-value=4e-13 Score=126.13 Aligned_cols=100 Identities=13% Similarity=-0.019 Sum_probs=75.3
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-------------CCCcccccccccccCC-CCCcc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-------------GIPAYLGVLGTKRLPY-PSRSF 279 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-------------g~~~~~~~~d~~~lpf-~~~sF 279 (617)
.+|||+|||+|..+.+|+++ .|+|+|+|+.++..++.+ +.+. +....+..+|...++. ...+|
T Consensus 22 ~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 100 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE-RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 100 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHH-HCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHH-hccccchhhhhhhhhccccccceecccccccccccccce
Confidence 69999999999999999987 489999999888777633 2221 2334566667766653 35689
Q ss_pred ccccccccccccccc-cceEEEEecccccCCceeeecC
Q 007128 280 ELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 280 DlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
|+|++..++++.... ...+++++.++|||||++++..
T Consensus 101 D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 101 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 999998876554332 2468999999999999988753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=8.1e-13 Score=133.74 Aligned_cols=116 Identities=17% Similarity=0.271 Sum_probs=78.5
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccc-----
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYL----- 264 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~----- 264 (617)
..|.+.+.+.+.. .+ ..+|||||||+|.++..|+++ .|+|+|+|+.|+..|+.+ +..++....+
T Consensus 42 ~~~~~~l~~~l~~------~~--~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~-~~~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ------HG--CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKE-RWNRRKEPAFDKWVI 112 (292)
T ss_dssp HHHHHHHHHHHHH------TT--CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhhh------cC--CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHH-HHhcccccccceeee
Confidence 4455666666654 33 268999999999999999887 599999999999887743 3333333221
Q ss_pred cccccc----ccCCCCCccccccccc-cccccccc------cceEEEEecccccCCceeeecCh
Q 007128 265 GVLGTK----RLPYPSRSFELAHCSR-CRIDWLQR------DGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 265 ~~~d~~----~lpf~~~sFDlV~~s~-~l~h~~~~------~~~~L~el~RvLrPGG~lvis~p 317 (617)
..++.. .+|+ .++||+|+|.. ++.|+... ...+|+++.|+|||||+|++...
T Consensus 113 ~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 113 EEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 122221 2333 46899999865 43443321 23489999999999999999643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.15 E-value=1.4e-12 Score=129.52 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=87.2
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.++|||||||+|.++..|+++ .++++|+ +.++..++.+ ..+.++ .+.+..+|... +.+ .+||+|+++.++
T Consensus 81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~vl 156 (253)
T d1tw3a2 81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFVL 156 (253)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESCG
T ss_pred CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHH-HHHhhcccchhhccccchh-hcc-cchhheeecccc
Confidence 368999999999999999875 3667787 4566666643 333443 36677777643 233 579999999997
Q ss_pred ccccccc-ceEEEEecccccCCceeeecChhh---hcCCHHHHH--------------HHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSPEA---YAQDEEDLR--------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~---~~~~~~~~~--------------~w~~l~~l~~~~gf~~v~ 346 (617)
+||.++. ..+|++++|+|||||+++|..... ......... .-+++.++++++||+++.
T Consensus 157 h~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 157 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232 (253)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence 7775442 358999999999999999863221 111111100 016778889999997654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.1e-12 Score=128.04 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=86.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHH-------------
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFAL------------- 256 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~------------- 256 (617)
+.+.+.+.+.+.. ..+ .+|||+|||+|..+.+|++. .|+|+|+|+.+++.++.+...
T Consensus 31 ~~l~~~~~~~l~~------~~~--~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 31 QLLKKHLDTFLKG------KSG--LRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp HHHHHHHHHHHTT------CCS--CEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred HHHHHHHHHhcCC------CCC--CEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 3444556666655 333 68999999999999999987 489999999887665533221
Q ss_pred ----HhCCCcccccccccccC-CCCCcccccccccccccccccc-ceEEEEecccccCCceeeecCh
Q 007128 257 ----ERGIPAYLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 257 ----~rg~~~~~~~~d~~~lp-f~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis~p 317 (617)
..+.++.+.++|...++ ...+.||+|+...+++|...+. ..+++++.++|||||++++..+
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 12345677778877774 5678999999887766654432 4589999999999999888643
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.13 E-value=1.6e-12 Score=127.69 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=89.7
Q ss_pred CceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCCCCCcccccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPYPSRSFELAHCSRC 287 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~~ 287 (617)
.++.+|||||||+|.++.+|++. .|+|+|+|+.++..+.. .+..+. ++.....|... .++.+..||++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~-~a~~~~-ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAERE-NIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTCT-TEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHhhhc-ccceEEEeeccCcccccccceeEEeecc
Confidence 44579999999999999998874 48999999998877763 344332 33334444433 3355667777665544
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcC-CHHHHHHHHHHHHHHHHhhhhhhhc
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQ-DEEDLRIWKEMSALVERMCWRIAAK 347 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~-~~~~~~~w~~l~~l~~~~gf~~v~~ 347 (617)
+++..+...++.++.++|||||+++++....... .......+++..+.+++.||+++..
T Consensus 151 -~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 151 -VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp -CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred -ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 4445555678999999999999999874333211 1111234577888899999987653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=2.1e-12 Score=130.65 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHh
Q 007128 182 GGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALER 258 (617)
Q Consensus 182 gg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~r 258 (617)
+++........+-.+.+.+.+.+ .++ .+|||||||.|.++.++++. .|+|+++|+..++.++.+. .+.
T Consensus 38 ~~~~tL~eAQ~~k~~~~~~~l~l------~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~-~~~ 108 (285)
T d1kpga_ 38 RDDMTLQEAQIAKIDLALGKLGL------QPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANS 108 (285)
T ss_dssp STTCCHHHHHHHHHHHHHTTTTC------CTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCC------CCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHH-Hhh
Confidence 33334444444445556666655 444 79999999999999998875 5888988887766666333 333
Q ss_pred CC--CcccccccccccCCCCCccccccccccccccccc-cceEEEEecccccCCceeeecC
Q 007128 259 GI--PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 259 g~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~-~~~~L~el~RvLrPGG~lvis~ 316 (617)
++ .+.+..+|...++ ++||.|++..++.|+... ...+++++.|+|||||.+++.+
T Consensus 109 g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 109 ENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 33 3556666766654 689999999887776432 3569999999999999999853
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.12 E-value=4.2e-12 Score=120.16 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=94.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC--Cccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLG 268 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d 268 (617)
.....+...+.. . ++.+|||+|||+|.++..++.. .|+++|+++.+++.++. .+++.++ ++.+.++|
T Consensus 20 eir~~il~~l~~------~--~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~-n~~~~gl~~~v~~~~gd 90 (186)
T d1l3ia_ 20 EVRCLIMCLAEP------G--KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEM-NLQRHGLGDNVTLMEGD 90 (186)
T ss_dssp HHHHHHHHHHCC------C--TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCTTEEEEESC
T ss_pred HHHHHHHHhcCC------C--CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHH-HHHHcCCCcceEEEECc
Confidence 344555666655 3 3479999999999999988875 59999999999888874 4555665 57788889
Q ss_pred ccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
+...+++...||+|++.....+ ...+++++.+.|||||++++...... . -..+.+.++..+|.
T Consensus 91 a~~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~~~e-----~---~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 91 APEALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAILLE-----T---KFEAMECLRDLGFD 153 (186)
T ss_dssp HHHHHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEECBHH-----H---HHHHHHHHHHTTCC
T ss_pred hhhcccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEeeccc-----c---HHHHHHHHHHcCCC
Confidence 8888888889999998765322 24578899999999999998643221 1 12344556666663
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=8.8e-13 Score=131.82 Aligned_cols=133 Identities=15% Similarity=0.078 Sum_probs=85.6
Q ss_pred ceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC-Cc---------------------------
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI-PA--------------------------- 262 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~-~~--------------------------- 262 (617)
++.+|||||||+|.+...++.. .|+++|+|+.++..++.......+. +.
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 4579999999999887655543 5999999999888776432221110 00
Q ss_pred --ccccccc------cccCCCCCccccccccccccccccc---cceEEEEecccccCCceeeecChhhhcCC---H----
Q 007128 263 --YLGVLGT------KRLPYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFAYSSPEAYAQD---E---- 324 (617)
Q Consensus 263 --~~~~~d~------~~lpf~~~sFDlV~~s~~l~h~~~~---~~~~L~el~RvLrPGG~lvis~p~~~~~~---~---- 324 (617)
.....|+ ...++.+++||+|+|.+++++...+ ...+++++.++|||||+|++.+....... .
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 0011222 1233456789999999997665433 35689999999999999999643221100 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 007128 325 EDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 325 ~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
...-..+++.++++.+||+++.
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEE
Confidence 0000126789999999997654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.10 E-value=1.3e-12 Score=127.06 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=79.3
Q ss_pred hHHHhhhcchhhHhhhcC----CceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC-cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKE----KDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP-RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p-~tfDlvh~~~~~ 530 (617)
+|||+|||+|.++..|++ .+. +|+.+|. ++|++.|.++ +....++..+.++..+| ..||+|+|..++
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 599999999999988875 355 7888884 7999999876 44556665566666677 899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|+.. -++..+|.||.|+|||||.+++.|..
T Consensus 119 ~~~~~--~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 119 QFLPP--EDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp GGSCG--GGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCh--hhHHHHHHHHHHhCCCCceeeccccc
Confidence 87742 26779999999999999999998753
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.10 E-value=1.3e-12 Score=130.11 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=89.1
Q ss_pred ccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhhcccCCcchhhhhhhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
...-.+|||+|||+|.++..|+.+... +|+.+|. +.|++.|.++.- +-.++.-.+.++.-+++||+|+|..+|
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccc
Confidence 344557999999999999998876432 4556663 688887766521 212222223343223899999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhcccccc
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~ 581 (617)
.|+... ++..+|.++.|+|||||+++|.+... ..++++++++..+++.+
T Consensus 169 ~hl~d~--d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 169 IYLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred cccchh--hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence 998633 45688999999999999999988653 25678999999999886
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=7.7e-13 Score=130.28 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred hhHHHhhhcchhhHhhhcCC-ceEEEEeecCC-CCCceEEEeec----ccccchhhhhhhcc--cCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEK-DVWVMSVVPED-GPNTLKLIYDR----GLIGSIHNWCEAYS--TYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~-~~~~l~~~~~r----gl~~~~~~~~e~~~--~~p~tfDlvh~~~~~~ 531 (617)
.+|||+|||+|.++..|+++ ++.| +.+| ++.|++.|.++ |+-..+.....++. ..+++||+|+|..++.
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~~~~v---~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 111 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDHGITG---TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW 111 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred CEEEEEcCCCCHHHHHHHHhcCCEE---EEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehhh
Confidence 46999999999999999875 6654 4555 36787776665 54111111111211 1249999999999999
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
|+. |+..+|.||.|+|||||+++|.+.
T Consensus 112 ~~~----d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 112 IAG----GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp GTS----SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ccC----CHHHHHHHHHHHcCcCcEEEEEec
Confidence 887 889999999999999999999875
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.08 E-value=4e-12 Score=124.92 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=70.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccC--Ccchhhhhhh-hhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTY--PRTYDLLHAW-TVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~--p~tfDlvh~~-~~~~ 531 (617)
++|||+|||+|.++..|++++. .|+.+|. ++|++.|.+| |+ .+.-.+.++..+ +++||+|.|. .+|.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccccceeeeeee
Confidence 4699999999999999999987 6778884 7999988776 33 112222333333 4899999864 5676
Q ss_pred hhhhcCCCcccchhhccccccCcceEEE
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
|+. +.-++..+|.+|.|.|||||.|++
T Consensus 114 ~~~-~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 114 YII-DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCC-SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 664 222667899999999999999986
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.1e-12 Score=124.38 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=95.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-----c-------------cchhhh----------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-----I-------------GSIHNW---------- 510 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-----~-------------~~~~~~---------- 510 (617)
..|||+|||+|.++..++..+.. .|+.+|. ++|++.|.++-- + |.+..+
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 35999999999999888877653 6777774 688877755411 0 000000
Q ss_pred ---------hhh--cccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------
Q 007128 511 ---------CEA--YSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------------- 564 (617)
Q Consensus 511 ---------~e~--~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------------- 564 (617)
..+ ...++ .+||+|.+..+++|+....-++..++.+|.|+|||||++|+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~ 210 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 210 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence 001 11233 8999999999999875333356689999999999999999987533
Q ss_pred --HHHHHHHhhhhcccccccccc--cCCCC--CCCCCCeEEEEEEec
Q 007128 565 --VVDFVKKYLRALNWEAVATTA--DASSD--SDKDGDEVVFIVQKK 605 (617)
Q Consensus 565 --~~~~~~~~~~~~~w~~~~~~~--~~~~~--~~~~~~~~~l~~~K~ 605 (617)
..++++++++..+++++ .+. .-... .....+..+++|+|+
T Consensus 211 ~~~~~~~~~~l~~aGf~v~-~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 211 ALEKGEVEQAVLDAGFDIE-QLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp CCCHHHHHHHHHHTTEEEE-EEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEE-EEEEeccccccccCCCCcEEEEEEEeC
Confidence 46789999999999864 221 11111 112345567888885
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.08 E-value=3.8e-12 Score=123.07 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=72.1
Q ss_pred CceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.++.+|||+|||+|.++.+|++. .|+|+|+++.++..+. +.+..++ ++.+...|....+.....+|.+.+.+..
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEec
Confidence 34479999999999988888764 4999999999998876 3444443 5666667776665554444444322221
Q ss_pred cccccccceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+++..+...++.++.++|||||++++..
T Consensus 133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 IAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 2233344578999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.05 E-value=1.5e-12 Score=126.68 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=72.3
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccchhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
+|||+|||+|.++..|++++. .|+.+|. +++++.|.++.- +-.++.-.++++ .+++||+|.|..||.|++
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~--- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID--- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS---
T ss_pred cEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC---
Confidence 599999999999999999876 4555553 578877765532 222232223333 359999999999999997
Q ss_pred CCcccchhhcc-ccccCcceEEEecC
Q 007128 538 CSGEDLLLEMD-RILRPTGFVIIRDK 562 (617)
Q Consensus 538 c~~~~~l~Em~-RiLrPgG~~ii~~~ 562 (617)
++..+|.|+. |+|||||+++|..+
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEEeC
Confidence 8899999996 99999999999753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.04 E-value=6.9e-12 Score=124.80 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=84.8
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccccCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l 288 (617)
.++|||||||+|.++..|+++ .++++|+ +.++..++. ...+.+.. +.+...|... +.+ ..||+|++.+++
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vL 157 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARR-RFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVL 157 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHH-HHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccc
Confidence 368999999999999999876 4777887 445555543 33334443 4555555443 444 469999999998
Q ss_pred ccccccc-ceEEEEecccccCCceeeecChhhhc---CCHHHHH---------------HHHHHHHHHHHhhhhhhh
Q 007128 289 IDWLQRD-GILLLELDRLLRPGGYFAYSSPEAYA---QDEEDLR---------------IWKEMSALVERMCWRIAA 346 (617)
Q Consensus 289 ~h~~~~~-~~~L~el~RvLrPGG~lvis~p~~~~---~~~~~~~---------------~w~~l~~l~~~~gf~~v~ 346 (617)
++|.++. ..+|++++++|||||+++|.++.... ....... ..+++.++++++||+++.
T Consensus 158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred cccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence 7776542 35899999999999999987532211 1111000 015678888888886654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=2.2e-11 Score=117.93 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=80.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~ 266 (617)
+.....+.+.+.. .++ .+|||||||+|.++..|++. .|+++|+++.+++.++.+......-++.+..
T Consensus 61 P~~~a~~l~~l~l------~~g--~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~ 132 (213)
T d1dl5a1 61 PSLMALFMEWVGL------DKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC 132 (213)
T ss_dssp HHHHHHHHHHTTC------CTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred chhhHHHHHhhhc------ccc--ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc
Confidence 3444556667665 444 79999999999999888753 4899999998888777544433333566677
Q ss_pred ccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+|....++.+++||+|++..++.+.. .++.++|||||++++.
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 133 GDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEE
T ss_pred CchHHccccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEE
Confidence 78877777778999999887644332 3578899999999884
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=7.6e-12 Score=126.27 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=76.5
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCCcchhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p~tfDlvh~~ 527 (617)
++...-.+|||||||.|+++..++++ |+. |+.++. +++++.|.+| |+...+.....++..+|++||.|.+.
T Consensus 48 l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~---v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si 124 (280)
T d2fk8a1 48 LDLKPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSI 124 (280)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEE
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHhCcee---EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHh
Confidence 33344447999999999999999876 764 444442 4665555444 66544444445666677999999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.+|.|+... ++..++.++.|+|||||.++|.+
T Consensus 125 ~~~eh~~~~--~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 125 EAFEHFGHE--NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SCGGGTCGG--GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hHHHHhhhh--hHHHHHHHHHhccCCCceEEEEE
Confidence 999998532 56789999999999999998864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=2.4e-11 Score=121.31 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=92.5
Q ss_pred HHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh---CCCcccccc
Q 007128 196 ASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER---GIPAYLGVL 267 (617)
Q Consensus 196 ~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r---g~~~~~~~~ 267 (617)
..+...+.. .+ +.+|||+|||+|+++..|+.. .|+++|+++.++..|+.+..... -.++.+.+.
T Consensus 86 s~Ii~~l~i------~P--G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 86 AQIVHEGDI------FP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp HHHHHHTTC------CT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred HHHHHHhCC------CC--CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 345556655 33 479999999999999999864 58999999988877765443322 235678888
Q ss_pred cccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
|....++++++||.|++ +. .++..++.++.|+|||||++++..|... +..+.++.+....+|..+
T Consensus 158 d~~~~~~~~~~fDaV~l-----dl-p~P~~~l~~~~~~LkpGG~lv~~~P~i~-------Qv~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVL-----DM-LAPWEVLDAVSRLLVAGGVLMVYVATVT-------QLSRIVEALRAKQCWTEP 222 (264)
T ss_dssp CGGGCCCCTTCEEEEEE-----ES-SCGGGGHHHHHHHEEEEEEEEEEESSHH-------HHHHHHHHHHHHSSBCCC
T ss_pred ccccccccCCCcceEEE-----ec-CCHHHHHHHHHhccCCCCEEEEEeCccC-------hHHHHHHHHHHcCCeecc
Confidence 99889999999999974 33 3446799999999999999998766552 112333444445567543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.98 E-value=8e-12 Score=123.87 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=87.7
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeec----ccccchhhhhhh-cccCCcchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDR----GLIGSIHNWCEA-YSTYPRTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~r----gl~~~~~~~~e~-~~~~p~tfDlvh~ 526 (617)
++.++.++|||+|||+|.++..|+++ ++. ++.+|.+.+++.+.++ |+...+.....+ +...|..||+|++
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeE---EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 45677889999999999999999976 443 3334445566555443 442222221122 3334688999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh--------------------------HHHHHHHhhhhccccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS--------------------------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~--------------------------~~~~~~~~~~~~~w~~ 580 (617)
..+++|+... +...+|.++.|+|||||.|+|.|... ..+++++++++.+++.
T Consensus 153 ~~vlh~~~d~--~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 153 SFVLLNWPDH--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred ccccccCCch--hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeE
Confidence 9999977522 33578999999999999999987532 1356788999999987
Q ss_pred ccccc
Q 007128 581 VATTA 585 (617)
Q Consensus 581 ~~~~~ 585 (617)
+ ++.
T Consensus 231 ~-~v~ 234 (253)
T d1tw3a2 231 E-EVR 234 (253)
T ss_dssp E-EEE
T ss_pred E-EEE
Confidence 5 444
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=1.2e-11 Score=119.15 Aligned_cols=99 Identities=12% Similarity=0.191 Sum_probs=78.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
..|||||||+|.++..|++. .++|+|+++.++..+.. .+.+.++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~-~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHH-HHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 36999999999999999875 58999999988887774 4445555 5888888988776 88999999987655
Q ss_pred ccccccc--------ceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
.+|.... ..+|.++.|+|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4554332 248999999999999999864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.95 E-value=5.9e-12 Score=126.88 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=72.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCCcchhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYPRTYDLLHAW 527 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p~tfDlvh~~ 527 (617)
.+-.+|||+|||+|.++..|++. +. .|+.+|. +.+++.|.++ ++ +-..+.-.+.++ ++++||+|+|.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhccccccccccccccccccccc-ccCCceEEEEe
Confidence 44567999999999999999874 44 4555563 5777766554 22 111111112232 45899999999
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.++.|+. ++..+|.+|.|+|||||++++.++.
T Consensus 102 ~~l~~~~----d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 102 AFLLHMT----TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCGGGCS----SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhhcCC----CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999887 7889999999999999999998863
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=3.4e-12 Score=129.03 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=71.5
Q ss_pred cchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc----cccchh-------hhh---hhcccCCcch
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG----LIGSIH-------NWC---EAYSTYPRTY 521 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg----l~~~~~-------~~~---e~~~~~p~tf 521 (617)
...++|||+|||+|.++..|+++|. +|+.+|. ++||+.|.++. ...... +|. .+++ +..+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 3446799999999999999999987 6777884 79998887653 211111 121 1111 23899
Q ss_pred hhhhh-hhhhhhhhhcCC---CcccchhhccccccCcceEEEec
Q 007128 522 DLLHA-WTVFSDIEKRGC---SGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 522 Dlvh~-~~~~~~~~~~~c---~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
|+|.| ..+|.|+..... +...+|.|+.|+|||||.|||..
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 99986 458888753222 34569999999999999999954
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.91 E-value=6.5e-12 Score=119.59 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=71.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhccc--CCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYST--YPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~--~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++.+|++++. .|+.+|. +.|++.+.++ |+ ..++..+.++.. ++++||+|.|..+|.|+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeeecC
Confidence 599999999999999999987 4556663 5777765433 33 222222333332 35999999999999988
Q ss_pred hhcCCCcccchhhccccccCcceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. -+...+|.++.|+|||||++++...
T Consensus 109 ~~--~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 109 EA--QTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CT--THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CH--HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 52 2566899999999999999998754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.8e-11 Score=120.67 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=85.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccc-----h------------------------
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGS-----I------------------------ 507 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~-----~------------------------ 507 (617)
+.|||+|||+|.+...++.+.+ .+|+.+|- ++|++.+..+-- .+. +
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred cEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 4699999999998876665544 37888884 788887754310 000 0
Q ss_pred ------hhhhh--h---cccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------
Q 007128 508 ------HNWCE--A---YSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------ 564 (617)
Q Consensus 508 ------~~~~e--~---~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------ 564 (617)
.|... . .+..+.+||+|.+..+++|+..+..++..+|.++.|+|||||++|+.+...
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 01000 0 111236899999999999886555567899999999999999999987744
Q ss_pred ----HHHHHHHhhhhcccccc
Q 007128 565 ----VVDFVKKYLRALNWEAV 581 (617)
Q Consensus 565 ----~~~~~~~~~~~~~w~~~ 581 (617)
..++|+++++..+.+++
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEE
Confidence 46789999999998864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.86 E-value=7.9e-11 Score=116.64 Aligned_cols=116 Identities=8% Similarity=0.100 Sum_probs=83.4
Q ss_pred ceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhC-CCcccccccccccCCCCCcccccccccc
Q 007128 214 RLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERG-IPAYLGVLGTKRLPYPSRSFELAHCSRC 287 (617)
Q Consensus 214 ~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg-~~~~~~~~d~~~lpf~~~sFDlV~~s~~ 287 (617)
++.+|||+|||+|.++..|++. .|+++|+++.++..|+.+.....+ .++.+...|+... +++++||.|++.
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-- 161 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-- 161 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC--
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec--
Confidence 3479999999999999888864 489999998877777754443222 3567777787665 567899999843
Q ss_pred ccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 007128 288 RIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRI 344 (617)
Q Consensus 288 l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~ 344 (617)
. .++..++.++.++|||||++++..|... ..+.+.+.+++.||..
T Consensus 162 ---~-p~p~~~l~~~~~~LKpGG~lv~~~P~i~--------Qv~~~~~~l~~~gf~~ 206 (250)
T d1yb2a1 162 ---I-PDPWNHVQKIASMMKPGSVATFYLPNFD--------QSEKTVLSLSASGMHH 206 (250)
T ss_dssp ---C-SCGGGSHHHHHHTEEEEEEEEEEESSHH--------HHHHHHHHSGGGTEEE
T ss_pred ---C-CchHHHHHHHHHhcCCCceEEEEeCCcC--------hHHHHHHHHHHCCCce
Confidence 2 2335789999999999999998766541 1234445556677753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.4e-10 Score=111.29 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=78.0
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh-----CCCc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER-----GIPA 262 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r-----g~~~ 262 (617)
.....+.++|.. ...++.+|||||||+|..+..|++. .|+++|+++.+++.++....+.. ..++
T Consensus 61 ~~~a~~le~L~~------~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~ 134 (224)
T d1i1na_ 61 HMHAYALELLFD------QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 134 (224)
T ss_dssp HHHHHHHHHTTT------TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred HHHHHHHHHHhh------ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccce
Confidence 334455566533 2233479999999999988877753 59999999988887764443321 1245
Q ss_pred ccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 263 YLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 263 ~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
.+..+|....++++++||+|++..++.+. ..++.+.|||||++++.
T Consensus 135 ~~~~gD~~~~~~~~~~fD~I~~~~~~~~i-------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 135 QLVVGDGRMGYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEE
T ss_pred EEEEeecccccchhhhhhhhhhhcchhhc-------CHHHHhhcCCCcEEEEE
Confidence 66677887777788899999988664332 23578999999999984
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=5.8e-11 Score=120.25 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=71.7
Q ss_pred hhhHHHhhhcchhhHhhhcC-CceEEEEeecCCCCCceEE----EeecccccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKE-KDVWVMSVVPEDGPNTLKL----IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~-~~~~v~~v~~~~~~~~l~~----~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
=.+|||+|||.|+++.++++ .|+.|..|+.. +++++. +.+.|+...++.-..++++.+++||.|.+..+|.|+
T Consensus 62 G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~ 139 (291)
T d1kpia_ 62 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF 139 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred CCEEEEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhc
Confidence 33699999999999999985 47755444443 344333 334476554444345555556999999999999988
Q ss_pred hhcC-----CCcccchhhccccccCcceEEEec
Q 007128 534 EKRG-----CSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 534 ~~~~-----c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
.... -+....+.++.|+|||||.+++.+
T Consensus 140 ~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 140 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp TCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 6221 235689999999999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=5.5e-11 Score=118.99 Aligned_cols=98 Identities=9% Similarity=0.086 Sum_probs=68.0
Q ss_pred hHHHhhhcchhhHhhhcCC-----ceEEEEeecCCC-CCceEEEeecc-----ccc---chhhh-hhh-----cccCC-c
Q 007128 461 NLMDMKAHLGSFAAALKEK-----DVWVMSVVPEDG-PNTLKLIYDRG-----LIG---SIHNW-CEA-----YSTYP-R 519 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~-----~~~v~~v~~~~~-~~~l~~~~~rg-----l~~---~~~~~-~e~-----~~~~p-~ 519 (617)
+|||+|||+|.++..|++. +.....++.+|. +.|++.+.++- +-. .++.- .+. ....+ +
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 5999999999998877643 112335667774 57777766551 100 11110 011 12233 9
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+||+|+|.++|.|+. ++..+|.+|.|+|||||.++|...
T Consensus 123 ~fD~I~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEEccceecCC----CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 999999999999887 889999999999999999987643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.84 E-value=1.9e-11 Score=114.48 Aligned_cols=127 Identities=11% Similarity=0.235 Sum_probs=82.7
Q ss_pred HHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCC-CCCceEEEeecc----cc-----------cch
Q 007128 444 DSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPED-GPNTLKLIYDRG----LI-----------GSI 507 (617)
Q Consensus 444 ~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~-~~~~l~~~~~rg----l~-----------~~~ 507 (617)
..|+..|. +..+ ..|||+|||+|..+.+|+++|. .|+.+| +++|++.|.+|. .. ...
T Consensus 10 ~~~~~~l~--~~~~--~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 10 QQYWSSLN--VVPG--ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp HHHHHHHC--CCTT--CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHcC--CCCC--CEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 34555554 3333 3699999999999999999998 566666 367877776652 10 000
Q ss_pred hhhhhhc---ccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------HHHHHHH
Q 007128 508 HNWCEAY---STYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------VVDFVKK 571 (617)
Q Consensus 508 ~~~~e~~---~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------~~~~~~~ 571 (617)
...+.++ +.++ .+||+|.+..++.++... +...++.+|.|+|||||.+++..... ..++++.
T Consensus 83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~--~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~ 160 (201)
T d1pjza_ 83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPAD--MRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHR 160 (201)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHH--HHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred ceecccccccccccccceeEEEEEeeeEecchh--hhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHH
Confidence 1111122 1222 789999999999877422 45689999999999999987754322 2345666
Q ss_pred hhhhccccc
Q 007128 572 YLRALNWEA 580 (617)
Q Consensus 572 ~~~~~~w~~ 580 (617)
++. -+|+.
T Consensus 161 l~~-~~~~i 168 (201)
T d1pjza_ 161 VMS-GNWEV 168 (201)
T ss_dssp TSC-SSEEE
T ss_pred HhC-CCcEE
Confidence 653 35554
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.84 E-value=1e-10 Score=112.37 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=76.8
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccC--CCCCccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLP--YPSRSFELAHCSRCR 288 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lp--f~~~sFDlV~~s~~l 288 (617)
..|||||||+|.++..+++. .++|+|+++.++..+.. .+.+.++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~-~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHH-hhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 46999999999999999875 58999999988877763 4444555 5888888887765 78899999986654
Q ss_pred ccccccc--------ceEEEEecccccCCceeeecC
Q 007128 289 IDWLQRD--------GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~~--------~~~L~el~RvLrPGG~lvis~ 316 (617)
.+|.... ..+|.++.|+|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4444321 247889999999999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=5.1e-11 Score=119.13 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=68.1
Q ss_pred chhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
+-.+|||+|||+|.++..|++. ++ +++.+|. +.|++.|.++.- +.....-.+.++.-+++||+|++..++.
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~-- 158 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-- 158 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH--
Confidence 4456999999999999999876 45 4555663 688888877643 2211211233442239999999855443
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh-HHHHHHH
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKK 571 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~ 571 (617)
.+.||.|+|||||++++..+.. .+.+++.
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~ 188 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATPGPRHLMELKG 188 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred ---------HHHHHHHHhCCCcEEEEEeeCCcchHHHHH
Confidence 3689999999999999987643 3334443
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1e-10 Score=120.44 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=86.1
Q ss_pred cccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----
Q 007128 186 HFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE---- 257 (617)
Q Consensus 186 ~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~---- 257 (617)
.+........+.+.+.+.+ .++ .+|||||||+|.++..++.. .++|+|+++.++..|..+....
T Consensus 131 ~~~e~~~~~~~~~~~~~~l------~~~--~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~ 202 (328)
T d1nw3a_ 131 VYGETSFDLVAQMIDEIKM------TDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 202 (328)
T ss_dssp CCCCCCHHHHHHHHHHSCC------CTT--CEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHcCC------CCC--CEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 3444445556666677665 433 68999999999988887653 5899999998887766433221
Q ss_pred -----hCCCcccccccccccCCCCCcc--ccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 258 -----RGIPAYLGVLGTKRLPYPSRSF--ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 258 -----rg~~~~~~~~d~~~lpf~~~sF--DlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+..++.+.++|+..+++.+..| |+|+++ .+.++ .+....|.|+.|+|||||++++..
T Consensus 203 ~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~-~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 203 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG-PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhccccCCceEEEECcccccccccccCcceEEEEc-ceecc-hHHHHHHHHHHHhCCCCcEEEEec
Confidence 1235788899999999887766 455544 43443 444678999999999999998853
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=8.4e-11 Score=116.78 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=80.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cccc-chh-hhhhhcccCCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIG-SIH-NWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~-~~~-~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++.++++.+. .|+.+|. +.+++.|.++ |+-. .++ +....++. .+||+|.|+.+...
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~~- 196 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAEL- 196 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHHH-
T ss_pred EEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhcccccc-
Confidence 699999999999999999887 4667774 6787777653 4311 111 22222222 89999999766663
Q ss_pred hhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhcccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEAV 581 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~~ 581 (617)
+..++.++.|+|||||++++++-. ...+.+.+.+++.+|+.+
T Consensus 197 ------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 197 ------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEE
Confidence 346888999999999999998643 345678888999999885
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=1.4e-10 Score=113.27 Aligned_cols=128 Identities=11% Similarity=0.131 Sum_probs=81.9
Q ss_pred CceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccccc---cccCCCCCccccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT---KRLPYPSRSFELAHC 284 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~---~~lpf~~~sFDlV~~ 284 (617)
.++.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+..++ +......|. ...+.....+|+|++
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCcccccccccceEEEEE
Confidence 34589999999999999999864 4999999999888776 3444333 222333333 334445568998875
Q ss_pred cccccccccccceEEEEecccccCCceeeecChhhhcCC-HHHHHHHHHHHHHHHHhhhhhhh
Q 007128 285 SRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQD-EEDLRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 285 s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~-~~~~~~w~~l~~l~~~~gf~~v~ 346 (617)
. ++..+....++.++.++|||||+++++........ ......+.+.+.++ ..||+++.
T Consensus 150 d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~gf~iie 208 (227)
T d1g8aa_ 150 D---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEYFEVIE 208 (227)
T ss_dssp C---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTTSEEEE
T ss_pred E---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcCCEEEE
Confidence 4 22334445689999999999999998743321111 11122234555544 34776654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.6e-10 Score=116.20 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=78.3
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhC--CCccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERG--IPAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg--~~~~~~~ 266 (617)
..|.+.|.+.... .. +++|||||||+|.++..++++ .|+++|.++.+.. ++ +.+.+.+ ..+.+..
T Consensus 21 ~~y~~ai~~~~~~------~~--~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~ 90 (311)
T d2fyta1 21 ESYRDFIYQNPHI------FK--DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIK 90 (311)
T ss_dssp HHHHHHHHHCGGG------TT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhcccc------CC--cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEE
Confidence 4565666554443 22 368999999999998888775 4899999986543 33 2333333 3467778
Q ss_pred ccccccCCCCCccccccccccccccccc---cceEEEEecccccCCceeeec
Q 007128 267 LGTKRLPYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 267 ~d~~~lpf~~~sFDlV~~s~~l~h~~~~---~~~~L~el~RvLrPGG~lvis 315 (617)
++...+++++++||+|+|... .+.... ...++....++|||||+++-.
T Consensus 91 ~~~~~l~~~~~~~D~Ivse~~-~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 91 GKIEEVHLPVEKVDVIISEWM-GYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp SCTTTSCCSCSCEEEEEECCC-BTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eeHHHhcCccccceEEEEeee-eeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 899999999999999997643 233222 124566678899999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.79 E-value=2.7e-11 Score=119.72 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=72.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc----ccchhhhhhh---ccc-CCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL----IGSIHNWCEA---YST-YPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl----~~~~~~~~e~---~~~-~p~tfDlvh~~~~~ 530 (617)
.+|||||||+|+.+..+++.+.. +|+++|. +.|++.|.+|.. ...+...+.+ .+. ...+||+|.|..++
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 36999999999999999887652 4667774 689888877632 1111111111 111 23799999999999
Q ss_pred hhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
+|+..+.-++..+|.+|.|+|||||+||+..+.
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 887433335678999999999999999987553
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=3.5e-10 Score=113.00 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=86.4
Q ss_pred HHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccc
Q 007128 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGT 269 (617)
Q Consensus 197 ~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~ 269 (617)
.+...+.+ .++ .+|||+|||+|.++..|++. .|+++|+++.+++.|+.. ....++. +.+...|.
T Consensus 94 ~Ii~~l~i------~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~-~~~~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 94 FIAMMLDV------KEG--DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDI 164 (266)
T ss_dssp HHHHHTTC------CTT--CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCG
T ss_pred HHHHhhCC------CCC--CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-HHHhccccCcEEEeccc
Confidence 45666665 444 79999999999999988764 489999999888888743 4444442 33444443
Q ss_pred cccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 270 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 270 ~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
...++...||.|+ ++. .++..++.++.++|||||++++..|... ..+++.+.++..||..+
T Consensus 165 -~~~~~~~~~D~V~-----~d~-p~p~~~l~~~~~~LKpGG~lv~~~P~~~--------Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 165 -SEGFDEKDVDALF-----LDV-PDPWNYIDKCWEALKGGGRFATVCPTTN--------QVQETLKKLQELPFIRI 225 (266)
T ss_dssp -GGCCSCCSEEEEE-----ECC-SCGGGTHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHSSEEEE
T ss_pred -cccccccceeeeE-----ecC-CCHHHHHHHHHhhcCCCCEEEEEeCccc--------HHHHHHHHHHHCCceeE
Confidence 2345667888886 333 3456899999999999999998765432 12445556667788543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=5.7e-11 Score=120.00 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=72.6
Q ss_pred chhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEE----EeecccccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKL----IYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~----~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
.=..|||||||.|+++.++++. |+.|..|+... .+++. +.+.|+...+..-+.++...|.+||-|.+-.+|.|
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~--~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh 139 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 139 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CCCEEEEecCcchHHHHHHHhcCCcceEEEeccH--HHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhh
Confidence 3346999999999999998865 66554444432 33333 34456655555445566667899999999999998
Q ss_pred hhhcCCCcccchhhccccccCcceEEEec
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+.. -+...++.++.|+|||||.+++.+
T Consensus 140 ~~~--~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 140 FGH--ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp TCT--TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCc--hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 742 256789999999999999998733
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.76 E-value=5.6e-11 Score=118.09 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=85.0
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEe----ecccccchhhhhhh-cccCCcchhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIY----DRGLIGSIHNWCEA-YSTYPRTYDLLHA 526 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~----~rgl~~~~~~~~e~-~~~~p~tfDlvh~ 526 (617)
++.+..++|||||||+|.++.+|+++ +. +++.+|.+.+++.+. +.|+...+.....+ +...|..||+|++
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~---~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCc---EEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 45677889999999999999999976 44 334444444554443 23442211111112 3335678999999
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecChh---------------------------HHHHHHHhhhhcccc
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS---------------------------VVDFVKKYLRALNWE 579 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~---------------------------~~~~~~~~~~~~~w~ 579 (617)
.++|++.... +...+|.++.|+|||||.|+|.|... ..+++++++++.+++
T Consensus 154 ~~vLh~~~d~--~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 154 SFVLLNWSDE--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred cccccccCcH--HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 9999976432 33578999999999999999988742 135678888888888
Q ss_pred cc
Q 007128 580 AV 581 (617)
Q Consensus 580 ~~ 581 (617)
.+
T Consensus 232 ~~ 233 (256)
T d1qzza2 232 LA 233 (256)
T ss_dssp EE
T ss_pred ee
Confidence 75
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=3.9e-10 Score=115.25 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=72.1
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
++|||||||+|.++..++++ .|+++|.++.+ ..+. +.+...+. .+.+..+++..++++.++||+|++... .+
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~-~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~-~~ 111 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM-GY 111 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC-BB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhh-hHHHHhCCccccceEeccHHHcccccceeEEEeeeee-ee
Confidence 68999999999988888765 48999998754 3333 34444444 367778899999999999999997644 33
Q ss_pred cccc---cceEEEEecccccCCceeeec
Q 007128 291 WLQR---DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~~~---~~~~L~el~RvLrPGG~lvis 315 (617)
.... ...++..+.|+|||||.++-.
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 3222 245777889999999998854
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=5e-10 Score=114.94 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=71.8
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||||||+|.++..++++ .|+++|.++ ++..++ +.+.+.+. .+.+..++...+++++++||+|++.....+
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~-~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHH-HHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 68999999999998888765 489999886 444444 34444444 466778899999999999999998654322
Q ss_pred cc--cccceEEEEecccccCCceeeec
Q 007128 291 WL--QRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~--~~~~~~L~el~RvLrPGG~lvis 315 (617)
.. .....++.++.|+|||||.++-.
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~iiP~ 144 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eccchhHHHHHHHHHhccCCCeEEEee
Confidence 22 22234677788999999998753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.8e-10 Score=112.18 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=66.9
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc------ccchhhhhhhcccCC-cchhhh-----hh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL------IGSIHNWCEAYSTYP-RTYDLL-----HA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl------~~~~~~~~e~~~~~p-~tfDlv-----h~ 526 (617)
.+|||||||+|.++.+|++.+. -+|+.+|. +.+++.|.++.- ....+++..-...++ .+||+| ++
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 3699999999999999998754 25677774 678887776642 112223332223343 666655 45
Q ss_pred hhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 527 WTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 527 ~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
...+.|+. +.+.++.|+.|+|||||.|++.+.
T Consensus 133 ~~~~~~~~----~~~~~~~~~~r~LkpGG~~~~~~~ 164 (229)
T d1zx0a1 133 SEETWHTH----QFNFIKNHAFRLLKPGGVLTYCNL 164 (229)
T ss_dssp BGGGTTTH----HHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cccccccc----CHHHHHHHHHHHcCCCcEEEEEec
Confidence 55555554 678899999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.66 E-value=4.5e-10 Score=106.51 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=86.1
Q ss_pred ccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc----ccchh-hhhhhcccCCcchhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL----IGSIH-NWCEAYSTYPRTYDLLH 525 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~-~~~e~~~~~p~tfDlvh 525 (617)
...-.+|||+|||+|.++.+|++..- +|..+|. +.+++.+.++ ++ +-.++ |+.+.++ +++||+|.
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii 124 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKII 124 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEE
Confidence 34455799999999999999998765 5666664 5666666543 33 11111 3323222 38999999
Q ss_pred hhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 526 AWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 526 ~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
++..|.+... ..+.++.++.|+|+|||.++|..... ..+.+...++..-+++ +... ....-+||.++|
T Consensus 125 ~~~p~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~--~~~~------~~~gf~vl~a~K 193 (194)
T d1dusa_ 125 TNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNV--ETVT------IKGGYRVLKSKK 193 (194)
T ss_dssp ECCCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCC--EEEE------EETTEEEEEEEC
T ss_pred EcccEEecch---hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcE--EEEE------ecCCcEEEEEEE
Confidence 9887764331 23578999999999999987644333 3445666666665555 3331 034567888887
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.65 E-value=2.5e-09 Score=103.94 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
....+.+.|.. .++ .+|||||||+|.++..|++. .|+++|+++..+..++.... ...++.+..+|...
T Consensus 58 ~~a~ml~~L~l------~~g--~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~ 127 (224)
T d1vbfa_ 58 LGIFMLDELDL------HKG--QKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTL 127 (224)
T ss_dssp HHHHHHHHTTC------CTT--CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGG
T ss_pred hHHHHHHHhhh------ccc--ceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh--cccccccccCchhh
Confidence 33445666665 444 79999999999999888765 58999998877766653322 23467777777655
Q ss_pred cCCCCCccccccccccccccccccceEEEEecccccCCceeee
Q 007128 272 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAY 314 (617)
Q Consensus 272 lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvi 314 (617)
.....++||.|++..+..+. ...+.+.|+|||++++
T Consensus 128 g~~~~~pfD~Iiv~~a~~~i-------p~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 128 GYEEEKPYDRVVVWATAPTL-------LCKPYEQLKEGGIMIL 163 (224)
T ss_dssp CCGGGCCEEEEEESSBBSSC-------CHHHHHTEEEEEEEEE
T ss_pred cchhhhhHHHHHhhcchhhh-------hHHHHHhcCCCCEEEE
Confidence 44456789999987664332 2346688999999998
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.61 E-value=4.4e-10 Score=109.87 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc-ccchhhhhhhcccCC-cchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL-IGSIHNWCEAYSTYP-RTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl-~~~~~~~~e~~~~~p-~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++..|++..- -..|.++|. +.|++.+.++ +. +....+...+ ..|+ .+||++.+.+.+.+.
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~-~~~~~~~~~v~~i~~~~~~~ 154 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP-QEYANIVEKVDVIYEDVAQP 154 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG-GGGTTTCCCEEEEEECCCST
T ss_pred EEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC-cccccccceeEEeeccccch
Confidence 599999999999999997520 014566663 5665555443 33 3333343333 3343 677776665555544
Q ss_pred hhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCC
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSD 592 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 592 (617)
. +.+.++.|+.|+|||||+++|.+... ..+++.+.++..+++.+ +.+| .++.
T Consensus 155 ~----~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv-e~id--L~py 216 (230)
T d1g8sa_ 155 N----QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV-DEVD--IEPF 216 (230)
T ss_dssp T----HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE-EEEE--CTTT
T ss_pred H----HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE-EEec--CCCC
Confidence 3 66788999999999999999975432 45677888888899887 5555 6654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=5.5e-10 Score=108.51 Aligned_cols=114 Identities=8% Similarity=-0.051 Sum_probs=76.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----------------------cc-ccchh-hhhhhcc
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----------------------GL-IGSIH-NWCEAYS 515 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----------------------gl-~~~~~-~~~e~~~ 515 (617)
.|||+|||.|..+.+|+++|. .|+.+|. +.+++.|.++ +. +..+. |..+-.+
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 699999999999999999998 5666674 4555433222 11 11111 1111112
Q ss_pred cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh------------HHHHHHHhhhhccccc
Q 007128 516 TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 516 ~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------------~~~~~~~~~~~~~w~~ 580 (617)
..+.+||+|....+|.|+... +.+..+.+|.|+|||||++++..... ..++++.++.. .|++
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~~--~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINPG--DRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCGG--GHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCceeEEEEEEEEEeccch--hhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 234899999999999887422 56789999999999999876664321 35678888865 3543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.2e-09 Score=107.77 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=75.2
Q ss_pred HHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHh-----------CC
Q 007128 197 SIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALER-----------GI 260 (617)
Q Consensus 197 ~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~r-----------g~ 260 (617)
.|..++.+ .++ .+|||+|||+|.++..|+.. .|+++|+++.++..|+.++.... ..
T Consensus 89 ~Il~~l~i------~pG--~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~ 160 (324)
T d2b25a1 89 MILSMMDI------NPG--DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160 (324)
T ss_dssp HHHHHHTC------CTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred HHHHHhCC------CCC--CEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 45566665 444 79999999999999999864 49999999988877775443321 12
Q ss_pred CcccccccccccC--CCCCccccccccccccccccccceEEEEecccccCCceeeecChhh
Q 007128 261 PAYLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 261 ~~~~~~~d~~~lp--f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
++.+...|+.... +++..||.|+. +.. ++..++.++.++|||||+|++-.|..
T Consensus 161 nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 161 NVDFIHKDISGATEDIKSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CEEEEESCTTCCC-------EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ceeEEecchhhcccccCCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 3556666665543 45678999974 222 33568999999999999999866655
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.54 E-value=1.1e-09 Score=105.31 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCCcchhhhh-hhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYPRTYDLLH-AWTVFSD 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p~tfDlvh-~~~~~~~ 532 (617)
+|||+|||+|+++.+|++. .. .|..+|. +.|++.+.++ +.+..++.-......|+..+|.+. +.+.+.|
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~ 135 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCS
T ss_pred EEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccC
Confidence 6999999999999999874 22 3677774 6777665444 333333322233344554444432 1222332
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh----------HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEE
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIV 602 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 602 (617)
. .+...+|.|+.|+|||||+++|.+... +.+.+...+. -+++.+ ...+ .+| ..++.++|.
T Consensus 136 ~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~-E~i~--L~P--~~~~H~~v~ 205 (209)
T d1nt2a_ 136 K----NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIV-KHGS--LMP--YHRDHIFIH 205 (209)
T ss_dssp T----THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEE-EEEE--CTT--TCTTEEEEE
T ss_pred h----hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEE-EEEc--cCC--CccCcEEEE
Confidence 2 256789999999999999999976322 2222333222 256654 4444 555 445667777
Q ss_pred Eecc
Q 007128 603 QKKI 606 (617)
Q Consensus 603 ~K~~ 606 (617)
-+.|
T Consensus 206 ~~r~ 209 (209)
T d1nt2a_ 206 AYRF 209 (209)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=5.3e-09 Score=104.56 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=86.1
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
..+|||+|||+|.++..++.. .|+++|+|+..+..|+ +.+...++ ++.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 357999999999888887653 6999999999888888 55666666 47888877654 45667999999873221
Q ss_pred c------------cccc------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 007128 290 D------------WLQR------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWRIA 345 (617)
Q Consensus 290 h------------~~~~------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~~v 345 (617)
. +.+. ...++.++.+.|+|||.+++.... .+ .+.+.+++...||..+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~----~q-----~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----QQ-----GEAVRQAFILAGYHDV 257 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----SC-----HHHHHHHHHHTTCTTC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc----hH-----HHHHHHHHHHCCCCeE
Confidence 1 0000 013667888999999999995311 11 1567888999999654
Q ss_pred h
Q 007128 346 A 346 (617)
Q Consensus 346 ~ 346 (617)
.
T Consensus 258 ~ 258 (274)
T d2b3ta1 258 E 258 (274)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=6.4e-09 Score=109.31 Aligned_cols=122 Identities=7% Similarity=0.022 Sum_probs=77.9
Q ss_pred ccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHh--
Q 007128 185 THFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALER-- 258 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~r-- 258 (617)
..|......++..+.+.+.+ .++ .+|||||||+|.++..++.. .++|+|+++.++..|+.+.....
T Consensus 195 ~vYGEl~~~~i~~Il~~l~L------kpg--d~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~ 266 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQL------KKG--DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTC------CTT--CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCC------CCC--CEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34445556677777777776 444 78999999999999888764 58999999988887774433211
Q ss_pred ----CCC---ccc-ccccccccCCCC---CccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 259 ----GIP---AYL-GVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 259 ----g~~---~~~-~~~d~~~lpf~~---~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.. ..+ ...+....++.+ ..+|+|+++. . ++.++....|.++.|+|||||+++.+.
T Consensus 267 ~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~-~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 267 CKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-F-LFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-T-TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhhccccccceeeeeechhhccccccccccceEEEEec-c-cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 111 111 111221111111 2456666543 2 344455678999999999999998864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=3.9e-09 Score=102.80 Aligned_cols=131 Identities=16% Similarity=0.241 Sum_probs=79.8
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEE----eeccc-ccchhhhh--hhcccCCcchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLI----YDRGL-IGSIHNWC--EAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~----~~rgl-~~~~~~~~--e~~~~~p~tfDlvh~~~~ 529 (617)
+|||+|||+|+++..|++. .. .|..+|. +.|++.+ ..++. .....+-. +.+......+|+|+++-.
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G---~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~ 152 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred EEEEeccCCCHHHHHHHHHhCCCC---EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc
Confidence 5999999999999999974 33 3445552 4554443 33343 22222211 222222377888775322
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEecCh----------hHHHHHHHhhhhcccccccccccCCCCCCCCCCeEE
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ----------SVVDFVKKYLRALNWEAVATTADASSDSDKDGDEVV 599 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 599 (617)
.. . +...++.++.|+|||||+++|.... .+..+++++++. +++.+ +..+ .+|+. .+-.+
T Consensus 153 ~~--~----~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~ii-e~i~--L~p~~-~~H~~ 221 (227)
T d1g8aa_ 153 QP--T----QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVI-ERLN--LEPYE-KDHAL 221 (227)
T ss_dssp ST--T----HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEE-EEEE--CTTTS-SSEEE
T ss_pred cc--c----hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEE-EEEc--CCCCC-CceEE
Confidence 21 1 3457899999999999999986422 244456665543 77776 5555 55542 34578
Q ss_pred EEEEec
Q 007128 600 FIVQKK 605 (617)
Q Consensus 600 l~~~K~ 605 (617)
++++|+
T Consensus 222 vv~rK~ 227 (227)
T d1g8aa_ 222 FVVRKT 227 (227)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 888884
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.46 E-value=1.6e-08 Score=97.47 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=77.8
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCccccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLG 268 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d 268 (617)
+.....+.+.+.. .++ .+|||||||+|..++.|+.. .|+++|..+.....++.........++.+..+|
T Consensus 64 P~~~a~ml~~L~l------~~g--~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd 135 (215)
T d1jg1a_ 64 PHMVAIMLEIANL------KPG--MNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 135 (215)
T ss_dssp HHHHHHHHHHHTC------CTT--CCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hhhHHHHHHhhcc------Ccc--ceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence 3444566777776 444 69999999999998887753 488899988777666644443333567888888
Q ss_pred ccccCCCCCccccccccccccccccccceEEEEecccccCCceeeec
Q 007128 269 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 269 ~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
........+.||.|++..+..+.+. .+...|+|||++++.
T Consensus 136 ~~~g~~~~~pfD~Iiv~~a~~~ip~-------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 136 GSKGFPPKAPYDVIIVTAGAPKIPE-------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCCH-------HHHHTEEEEEEEEEE
T ss_pred cccCCcccCcceeEEeecccccCCH-------HHHHhcCCCCEEEEE
Confidence 7776666789999998765433221 256779999999973
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.43 E-value=2e-08 Score=97.34 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=67.5
Q ss_pred eeEEEeecccccccccccccc----------hhhhhccCCCccchhhhHHHHH-----hCCCcccccccccccCCCCCcc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----------DVITMSLAPNDVHQNQIQFALE-----RGIPAYLGVLGTKRLPYPSRSF 279 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----------~V~gvDis~~dl~~a~~~~a~~-----rg~~~~~~~~d~~~lpf~~~sF 279 (617)
+.+|||||||+|.+++.|++. .|+++|+.+..+..++...... ...++.+..+|......+.+.|
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 160 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 160 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccce
Confidence 379999999999998888753 3788888887766665332211 1235677778877766667899
Q ss_pred ccccccccccccccccceEEEEecccccCCceeeec
Q 007128 280 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 280 DlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
|.|++..+..+.. ..+.+.|+|||++++.
T Consensus 161 D~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 161 NAIHVGAAAPDTP-------TELINQLASGGRLIVP 189 (223)
T ss_dssp EEEEECSCBSSCC-------HHHHHTEEEEEEEEEE
T ss_pred eeEEEEeechhch-------HHHHHhcCCCcEEEEE
Confidence 9999876643222 2467899999999883
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.42 E-value=5.1e-09 Score=100.30 Aligned_cols=111 Identities=9% Similarity=0.122 Sum_probs=72.0
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEE----eeccc--c----cchhhhhhhcccCC-cchhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLI----YDRGL--I----GSIHNWCEAYSTYP-RTYDLLHA 526 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~----~~rgl--~----~~~~~~~e~~~~~p-~tfDlvh~ 526 (617)
.|||+|||+|.++..|++. +. +++++|. ++++..| .+.|+ + +...... ..+| +++|.|+.
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~---~~~~~~~~d~v~i 105 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT---DVFEPGEVKRVYL 105 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH---HHCCTTSCCEEEE
T ss_pred eEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh---cccCchhhhcccc
Confidence 4899999999999999875 45 6667774 4554443 33354 1 2222221 2244 99999887
Q ss_pred hhhhhhhh----hcCCCcccchhhccccccCcceEEE-ecChhHHHHHHHhhhhcc
Q 007128 527 WTVFSDIE----KRGCSGEDLLLEMDRILRPTGFVII-RDKQSVVDFVKKYLRALN 577 (617)
Q Consensus 527 ~~~~~~~~----~~~c~~~~~l~Em~RiLrPgG~~ii-~~~~~~~~~~~~~~~~~~ 577 (617)
....++.. +.|---...|.+|.|+|||||.|.| +|.....+.+.+.+....
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 55554321 1111124789999999999999976 567777777777666544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.38 E-value=5.9e-09 Score=97.98 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=76.7
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchhhhhhhcccCCcchhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIHNWCEAYSTYPRTYDLLHAWTVFS 531 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~ 531 (617)
..|||+|||+|.++.+|+.... .|+.+|. +++++.|.++ |+ +-.++........-...||+|.+.....
T Consensus 35 ~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~ 111 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG 111 (186)
T ss_dssp CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT
T ss_pred CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc
Confidence 3599999999999999998865 4556664 6777777664 44 2223322222222228999998765433
Q ss_pred hhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccccc
Q 007128 532 DIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 532 ~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~ 580 (617)
.++.++.++.+.|||||++++... .+...++.+.+...+|+.
T Consensus 112 -------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~ 154 (186)
T d1l3ia_ 112 -------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV 154 (186)
T ss_dssp -------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred -------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence 456789999999999999988764 345556667777777654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=6e-08 Score=96.11 Aligned_cols=151 Identities=10% Similarity=0.073 Sum_probs=94.8
Q ss_pred CceeecCCCCccccCchhhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhh
Q 007128 175 GEKIIFPGGGTHFHYGADKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQ 251 (617)
Q Consensus 175 ~~~~~Fpgg~~~F~~~a~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~ 251 (617)
+-.+.+.-..++|..+-..-...+.+.+. . +.+|||+|||+|.++..++.+ .|+++|+++..+..++
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~ri~~~~~--------~--g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~ 147 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERVRMAKVAK--------P--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV 147 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHCC--------T--TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHHHHHhhcC--------C--ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH
Confidence 44444444455565554433334444432 2 368999999999999888764 5899999998777666
Q ss_pred hHHHHHhCCC--cccccccccccCCCCCccccccccccccccccccceEEEEecccccCCceeeecChhhhcCCHHHHHH
Q 007128 252 IQFALERGIP--AYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRI 329 (617)
Q Consensus 252 ~~~a~~rg~~--~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~ 329 (617)
+.+...++. +.+..+|+..++. .+.||.|++.. .+ ....++.++.++|++||++.+........... ..
T Consensus 148 -~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~--~~ 218 (260)
T d2frna1 148 -ENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EP 218 (260)
T ss_dssp -HHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TT
T ss_pred -HHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEEeccccccchh--hH
Confidence 445555553 5677788877754 47899998542 11 12347778899999999987643221111110 01
Q ss_pred HHHHHHHHHHhhhhh
Q 007128 330 WKEMSALVERMCWRI 344 (617)
Q Consensus 330 w~~l~~l~~~~gf~~ 344 (617)
.+.+.+++...|+++
T Consensus 219 ~e~~~~~~~~~g~~v 233 (260)
T d2frna1 219 FETFKRITKEYGYDV 233 (260)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCce
Confidence 245666777777754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.33 E-value=1.5e-08 Score=99.98 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=69.4
Q ss_pred hHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccccch---h-hhhhhcccCCcchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLIGSI---H-NWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~---~-~~~e~~~~~p~tfDlvh~~~ 528 (617)
+|||+|||+|.++.+|++. +.. |..+|. +.+++.|.++ +...++ + |.++.++ +.+||.|+.+
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~fD~V~ld- 161 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIAD- 161 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEEC-
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--cceeeeeeec-
Confidence 5999999999999999863 333 455553 5677777654 222222 2 3333322 2899998752
Q ss_pred hhhhhhhcCCCcccchhhccccccCcceEEEecCh-hHHHHHHHhhhhccccc
Q 007128 529 VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-~~~~~~~~~~~~~~w~~ 580 (617)
+. ++..+|.++.|+|||||.+++..+. .-++++.+.++.-+|..
T Consensus 162 ----~p----~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~ 206 (250)
T d1yb2a1 162 ----IP----DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 206 (250)
T ss_dssp ----CS----CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred ----CC----chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCce
Confidence 32 6678999999999999999987663 23444444455555643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=9.9e-09 Score=104.53 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=63.7
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCC-CCceEEEeeccc---ccchhhhhhhcccCCcchhhhhhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDIE 534 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~ 534 (617)
++|||+|||+|.++..+++.|. .|..|..... ....+.+...|+ +..++.-.+.++.-++.||+|.+..+..++.
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~ 114 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence 3599999999999999998875 3444443221 111223333455 3333332334443238999998866665554
Q ss_pred hcCCCcccchhhccccccCcceEE
Q 007128 535 KRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 535 ~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
+...++.++.+++|+|||||.+|
T Consensus 115 -~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 115 -YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -cHHHHHHHHHHHHhcCCCCeEEE
Confidence 44567889999999999999986
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=5.7e-09 Score=106.85 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=64.5
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEe----eccc---ccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIY----DRGL---IGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~----~rgl---~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
+|||+|||+|.++..+++.|.. .|..+|...++..|. +.|+ +-.++.-.+.++.-+.+||+|.+..++.++
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~ 118 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred EEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence 5999999999999999988752 244444434444333 3354 223333333443223899999987776655
Q ss_pred hhcCCCcccchhhccccccCcceEE
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVI 558 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~i 558 (617)
. +.-.++.++.+++|+|||||.++
T Consensus 119 ~-~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 119 L-YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp S-TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c-cchhHHHHHHHHHhccCCCeEEE
Confidence 4 44467789999999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.1e-08 Score=103.94 Aligned_cols=113 Identities=14% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCce---EEEeeccc---ccchhhhhhhccc
Q 007128 444 DSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTL---KLIYDRGL---IGSIHNWCEAYST 516 (617)
Q Consensus 444 ~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l---~~~~~rgl---~~~~~~~~e~~~~ 516 (617)
..|.+.|.......+=.+|||+|||+|.++..+++.|. .|..+... +.+. +.+.+.|+ +-.++.-.+.+..
T Consensus 21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s--~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~ 98 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS--EILYQAMDIIRLNKLEDTITLIKGKIEEVHL 98 (311)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCH--HHHHHHHHHHHHhCCCccceEEEeeHHHhcC
Confidence 34555443222222223599999999999999998875 44444332 3332 23334454 3333333344443
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEE
Q 007128 517 YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 517 ~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
-+..||+|.+..+++++. ..-.++.++..++|+|||||.++-
T Consensus 99 ~~~~~D~Ivse~~~~~~~-~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 99 PVEKVDVIISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCSCEEEEEECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceEEEEeeeeeecc-cccccHHHHHHHHhcCCCCcEEec
Confidence 238999999876666543 223456778889999999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.29 E-value=2e-08 Score=96.02 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=72.2
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEee----ccc--ccchhhhhhhcc-cCC-cchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYD----RGL--IGSIHNWCEAYS-TYP-RTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~----rgl--~~~~~~~~e~~~-~~p-~tfDlvh~~~~ 529 (617)
.|||+|||.|.+...||+. +. +++++|. ++++..|.+ .|+ +-.++.-.+.+. .+| .++|.||+..-
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred eEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 4999999999999999875 45 5666663 455544433 344 222222112222 244 99999986433
Q ss_pred hh-----hhhhcCCCcccchhhccccccCcceEEE-ecChhHHHHHHHhhhhcccc
Q 007128 530 FS-----DIEKRGCSGEDLLLEMDRILRPTGFVII-RDKQSVVDFVKKYLRALNWE 579 (617)
Q Consensus 530 ~~-----~~~~~~c~~~~~l~Em~RiLrPgG~~ii-~~~~~~~~~~~~~~~~~~w~ 579 (617)
.+ |. +.|---...|.++.|+|||||.|+| +|..+..+.+...+....|.
T Consensus 111 dPw~K~~h~-krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~ 165 (204)
T d1yzha1 111 DPWPKKRHE-KRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMK 165 (204)
T ss_dssp CCCCSGGGG-GGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred ccccchhhh-hhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcc
Confidence 22 11 1222225789999999999999977 66777666666666665554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.27 E-value=3.5e-08 Score=93.36 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=63.2
Q ss_pred ceeEEEeecccccc----cccccccc--------hhhhhccCCCccchhhhHHH---HHhCCC-----------------
Q 007128 214 RLRTVLDVGCGVAS----FGAYLLSS--------DVITMSLAPNDVHQNQIQFA---LERGIP----------------- 261 (617)
Q Consensus 214 ~~~~VLDVGCG~G~----~~~~L~~~--------~V~gvDis~~dl~~a~~~~a---~~rg~~----------------- 261 (617)
+.-+|+++|||+|. ++..+.+. .|+|+|+++..+..|+...- ..+.++
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34689999999994 44444332 37888888877665541110 000010
Q ss_pred -----------cccccccccc-cCCCCCcccccccccccccccccc-ceEEEEecccccCCceeeec
Q 007128 262 -----------AYLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 262 -----------~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~~-~~~L~el~RvLrPGG~lvis 315 (617)
+.+...+... .+.+.+.||+|+|.++++.+.++. .++++.+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0011111111 123457899999999977655432 46999999999999999985
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=1.1e-08 Score=101.93 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=70.7
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhc-ccCC-cchhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAY-STYP-RTYDL 523 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~-~~~p-~tfDl 523 (617)
+..+. +|||+|||+|+++.+|++. +. .|..+|. +.+++.|.++ |+...+..-..++ ..++ ..||.
T Consensus 101 i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G---~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~ 175 (266)
T d1o54a_ 101 VKEGD--RIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDA 175 (266)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEE
T ss_pred CCCCC--EEEECCCCCCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceee
Confidence 44444 6999999999999999863 34 3555553 5776666554 3322221111111 1222 66666
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC-hhHHHHHHHhhhhccccc
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK-QSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~-~~~~~~~~~~~~~~~w~~ 580 (617)
|. .++. ++..+|.++.|+|||||.+++-.+ ...++++.+.++..+|..
T Consensus 176 V~-----~d~p----~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~ 224 (266)
T d1o54a_ 176 LF-----LDVP----DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 224 (266)
T ss_dssp EE-----ECCS----CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred eE-----ecCC----CHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCcee
Confidence 54 3444 788999999999999999987654 334455555555567754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=1.6e-08 Score=103.17 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=73.5
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc----cCCCCCcccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR----LPYPSRSFELAHCSRC 287 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~----lpf~~~sFDlV~~s~~ 287 (617)
+.+|||++||+|.++.+++.. .|+++|+++.+++.++ +.+...|+ ++.+..+|..+ ++...++||+|++.--
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 579999999999999888653 5999999999988887 45555666 46677777544 3445678999997521
Q ss_pred ccc--------cccccceEEEEecccccCCceeeecCh
Q 007128 288 RID--------WLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 288 l~h--------~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
... .......++..+.++|+|||.|++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 110 011112477788999999999998643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.20 E-value=5e-08 Score=99.73 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=72.2
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc----cCCCCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR----LPYPSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~----lpf~~~sFDlV~~s~ 286 (617)
.+|||+|||+|.++..++.. .|+++|+++..+..++ +.+...|+. +.+.++|+.. ++....+||+|++.-
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp 225 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 225 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence 68999999999999988765 5999999998888877 455556663 5666677543 334567899999743
Q ss_pred ccccc--------ccccceEEEEecccccCCceeeecChh
Q 007128 287 CRIDW--------LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 287 ~l~h~--------~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
-...- ......++..+.++|+|||+|++++..
T Consensus 226 P~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 226 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 21100 001123677888999999999987533
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=6.5e-08 Score=94.92 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=79.3
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .++..|+-. .++.+. ..-.+.+..+|..+ +.| ..|++++.+++++
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~ 151 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIENAP------PLSGIEHVGGDMFA-SVP--QGDAMILKAVCHN 151 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTCC------CCTTEEEEECCTTT-CCC--CEEEEEEESSGGG
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhccC------CCCCeEEecCCccc-ccc--cceEEEEehhhhh
Confidence 468999999999999999876 355566532 111111 11235566666542 444 3599999999888
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhh---cCCHHH--HH---------------HHHHHHHHHHHhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAY---AQDEED--LR---------------IWKEMSALVERMCWRIA 345 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~---~~~~~~--~~---------------~w~~l~~l~~~~gf~~v 345 (617)
|.++. ..+|+++++.|+|||.++|...... ...... .. ..+++.++++++||+.+
T Consensus 152 ~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v 227 (244)
T d1fp1d2 152 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF 227 (244)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCce
Confidence 86643 3589999999999999999653211 111110 00 01678899999999654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=3.7e-08 Score=97.74 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=65.0
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec------ccccchhhhhhhcc--cCC-cc
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR------GLIGSIHNWCEAYS--TYP-RT 520 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r------gl~~~~~~~~e~~~--~~p-~t 520 (617)
+..+. +|||+|||+|.++.+|+.. ... |..+|. +.+++.|.++ +...+++..+.++. .+| ++
T Consensus 94 i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~---V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 168 (264)
T d1i9ga_ 94 IFPGA--RVLEAGAGSGALTLSLLRAVGPAGQ---VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 168 (264)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred CCCCC--EEEecCcCCcHHHHHHHHhhCCCcE---EEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCC
Confidence 44444 6999999999999999864 332 455553 5777777653 11223333333322 244 99
Q ss_pred hhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 521 YDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 521 fDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
||.|+. |+. ++..++.++.|+|||||.+++-.+.
T Consensus 169 fDaV~l-----dlp----~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 169 VDRAVL-----DML----APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp EEEEEE-----ESS----CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred cceEEE-----ecC----CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 999865 344 7789999999999999999886653
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.05 E-value=1.5e-07 Score=87.13 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=63.5
Q ss_pred eEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc----cCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR----LPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~----lpf~~~sFDlV~~s~~l~ 289 (617)
.+|||+|||+|.++...+.+ .++++|.++..+..++ +.+...++...+...+... ......+||+|++.--
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP-- 119 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLK-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP-- 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred CeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhh-HHHHhhccccceeeeehhcccccccccCCccceeEEccc--
Confidence 58999999999999877665 4778999998877776 3455556655544444322 2345568999987521
Q ss_pred ccccccceEEEEe--cccccCCceeeecC
Q 007128 290 DWLQRDGILLLEL--DRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el--~RvLrPGG~lvis~ 316 (617)
+..+....+.++ ..+|+|||++++..
T Consensus 120 -Y~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 -YAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp -TTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred -cccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 111222233332 35799999999853
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.01 E-value=2.5e-07 Score=90.52 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=78.4
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
..+|||||||+|.++..++++ .+++.|+.+. ++.+. ....+.+...|... +.|. .|+++..++++.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 468999999999999999876 4667777542 22222 11345566666533 4443 466666777777
Q ss_pred ccccc-ceEEEEecccccCCceeeecChhhh---cCCHHH-H-----------------HHHHHHHHHHHHhhhhhhh
Q 007128 291 WLQRD-GILLLELDRLLRPGGYFAYSSPEAY---AQDEED-L-----------------RIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 291 ~~~~~-~~~L~el~RvLrPGG~lvis~p~~~---~~~~~~-~-----------------~~w~~l~~l~~~~gf~~v~ 346 (617)
|.++. ..+|+++++.|+|||.+++.+.... ...... . +..++++++++++||+.+.
T Consensus 152 ~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vk 229 (243)
T d1kyza2 152 WSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFK 229 (243)
T ss_dssp SCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEE
Confidence 75442 4599999999999999998642211 000000 0 0016788999999997664
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=4.5e-08 Score=94.07 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=57.0
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeeccc---ccchhhhhhh-cccCC--cchhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDRGL---IGSIHNWCEA-YSTYP--RTYDL 523 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~rgl---~~~~~~~~e~-~~~~p--~tfDl 523 (617)
++.+. +|||+|||+|.+++.|++. ... |+.+|. +.+++.|.++-- +..+...+.+ ...++ ++||+
T Consensus 73 l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~---V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~ 147 (213)
T d1dl5a1 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (213)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred ccccc--eEEEecCccchhHHHHHHHhCCCCc---EEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence 44444 7999999999999999753 332 444443 456655555421 1211111111 12233 78999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|++..++.+ +..++.|.|||||.+++-
T Consensus 148 I~~~~~~~~----------~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 148 IFVTVGVDE----------VPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp EEECSBBSC----------CCHHHHHHEEEEEEEEEE
T ss_pred hhhhccHHH----------hHHHHHHhcCCCcEEEEE
Confidence 998766653 334667899999999984
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=3.9e-07 Score=90.70 Aligned_cols=132 Identities=16% Similarity=0.291 Sum_probs=86.2
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc--ccchh-hhhhhcccCCcchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL--IGSIH-NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl--~~~~~-~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
+|||+|||+|.++..|+.. +. .|+.+|. +..++.|.+. |+ +..++ ||.++++. ..||+|.|+-=+
T Consensus 111 ~vlDlGtGSG~I~i~la~~~p~~---~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPY 185 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPY 185 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCC
T ss_pred ceeeeehhhhHHHHHHHhhCCcc---eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchh
Confidence 4999999999999998753 34 5666664 4555544333 22 22222 55555443 799999874111
Q ss_pred ---------hhhhhcCC------------CcccchhhccccccCcceEEEecChhHHHHHHHhhhhcccccccccccCCC
Q 007128 531 ---------SDIEKRGC------------SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVATTADASS 589 (617)
Q Consensus 531 ---------~~~~~~~c------------~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 589 (617)
+....+.. ....++.+..+.|+|||++++-...+-.+.+.+++...+|..+....| .
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kD--l 263 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD--Y 263 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC--T
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEEC--C
Confidence 10000100 112578889999999999999777776788999999999987633444 2
Q ss_pred CCCCCCCeEEEEEE
Q 007128 590 DSDKDGDEVVFIVQ 603 (617)
Q Consensus 590 ~~~~~~~~~~l~~~ 603 (617)
.+..+++++|
T Consensus 264 ----~g~~R~v~~r 273 (274)
T d2b3ta1 264 ----GDNERVTLGR 273 (274)
T ss_dssp ----TSSEEEEEEE
T ss_pred ----CCCceEEEEe
Confidence 5678888885
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.94 E-value=1.4e-06 Score=82.72 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=52.3
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~ 286 (617)
+.+|||+|||+|.++..++.+ .|+++|+++..+..++ +.+...++...+...|...+ ++.||+|+++-
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nP 117 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNP 117 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCSEEEECC
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCcEEEEcC
Confidence 368999999999988776654 5899999998877776 34555677777777777664 36799999764
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.92 E-value=2.7e-07 Score=90.37 Aligned_cols=134 Identities=16% Similarity=0.064 Sum_probs=85.9
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeecccc-cchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRGLI-GSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rgl~-~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..+++.|||+|||+|.++.+|+++ ++. ++-.|.+.+++.+....-+ ..-+|..++ .| ..|++...+++++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~---~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~---~p-~~D~~~l~~vLh~ 151 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIK---GINFDLPQVIENAPPLSGIEHVGGDMFAS---VP-QGDAMILKAVCHN 151 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCTTTC---CC-CEEEEEEESSGGG
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCe---EEEecchhhhhccCCCCCeEEecCCcccc---cc-cceEEEEehhhhh
Confidence 578899999999999999999865 332 2222333332211111111 111232233 44 3499999999987
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecChh-----------------------------HHHHHHHhhhhcccccccc
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-----------------------------VVDFVKKYLRALNWEAVAT 583 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-----------------------------~~~~~~~~~~~~~w~~~~~ 583 (617)
.... +...+|..+.+.|+|||.++|.|.+- ..++.+++++..+++.+ +
T Consensus 152 ~~de--~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v-~ 228 (244)
T d1fp1d2 152 WSDE--KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF-Q 228 (244)
T ss_dssp SCHH--HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE-E
T ss_pred CCHH--HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCce-E
Confidence 6533 23589999999999999999988531 14578889999999876 5
Q ss_pred cccCCCCCCCCCCeEEEEEEe
Q 007128 584 TADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~K 604 (617)
++.. +.....|+=++|
T Consensus 229 v~~~-----~~~~~~viE~~K 244 (244)
T d1fp1d2 229 VACR-----AFNSLGVMEFYK 244 (244)
T ss_dssp EEEE-----ETTTEEEEEEEC
T ss_pred EEec-----CCCCEEEEEEeC
Confidence 5531 123455666665
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.92 E-value=1.8e-07 Score=95.22 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=70.1
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC---Ccccccccccc----cCCCCCccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKR----LPYPSRSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~----lpf~~~sFDlV~~ 284 (617)
+++|||+.||+|.++.+++.. .|+++|+++..+..++.+. ..+++ ++.+..+|+.+ +.-..++||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~-~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHH-HHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 368999999999999877653 4899999999888887544 44444 35677777643 2224468999997
Q ss_pred cccc--------cccccccceEEEEecccccCCceeeecCh
Q 007128 285 SRCR--------IDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 285 s~~l--------~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
.--. .....+...++..+.++|+|||+|++++.
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4211 11111123467778899999999999754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.89 E-value=3e-07 Score=90.10 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=78.6
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDW 291 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~ 291 (617)
.+|||||||+|.++..++++ +++..|+.. .++.+. ....+.+..+|... +.+ .+|++++.+++++|
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVENLS------GSNNLTYVGGDMFT-SIP--NADAVLLKYILHNW 151 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTCC------CBTTEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHhCc------ccCceEEEecCccc-CCC--CCcEEEEEeecccC
Confidence 57999999999999998876 456666532 121111 12346677777654 333 57999999998888
Q ss_pred cccc-ceEEEEecccccCC---ceeeecChhhh--cCCHHH-----------------HHHHHHHHHHHHHhhhhhhh
Q 007128 292 LQRD-GILLLELDRLLRPG---GYFAYSSPEAY--AQDEED-----------------LRIWKEMSALVERMCWRIAA 346 (617)
Q Consensus 292 ~~~~-~~~L~el~RvLrPG---G~lvis~p~~~--~~~~~~-----------------~~~w~~l~~l~~~~gf~~v~ 346 (617)
.++. ..+|+++++.|+|| |+++|...... ...... .+..+++.++++++||+.+.
T Consensus 152 ~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred ChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 7653 35899999999999 66666432111 011000 00116788899999997643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.85 E-value=2.7e-06 Score=80.35 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~~s 285 (617)
+++|||+|||+|.++..++.. .|+++|+++..+ +.|+++..++.+..+|+..++ +.||+|+++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-----~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-----HHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 368999999999887665543 589999877544 444455456778888887764 679999976
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=1.4e-07 Score=96.34 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=64.1
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec--------------cc---ccchh-hhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR--------------GL---IGSIH-NWC 511 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r--------------gl---~~~~~-~~~ 511 (617)
|..|. .|||+|||+|.++.+|+.. +.. |..+|. +.+++.|.++ +. +..+| |.+
T Consensus 96 i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~---V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 96 INPGD--TVLEAGSGSGGMSLFLSKAVGSQGR---VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCE---EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred CCCCC--EEEEecccccHHHHHHHHHhCCCcE---EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 55554 5999999999999999863 343 333442 4555555432 00 11111 222
Q ss_pred hhcccCC-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhh-----hcccccc
Q 007128 512 EAYSTYP-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLR-----ALNWEAV 581 (617)
Q Consensus 512 e~~~~~p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~-----~~~w~~~ 581 (617)
.....++ .+||.|+. ++. ++..+|.++.|+|||||.+++-.+ .++.++++++ .+.|..+
T Consensus 171 ~~~~~~~~~~fD~V~L-----D~p----~P~~~l~~~~~~LKpGG~lv~~~P--~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 171 GATEDIKSLTFDAVAL-----DML----NPHVTLPVFYPHLKHGGVCAVYVV--NITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp CCC-------EEEEEE-----CSS----STTTTHHHHGGGEEEEEEEEEEES--SHHHHHHHHHHHHHHTCCEEEE
T ss_pred hcccccCCCCcceEee-----cCc----CHHHHHHHHHHhccCCCEEEEEeC--CHHHHHHHHHHHHHcCCCceee
Confidence 2211233 78888764 233 556799999999999999987554 2334444443 3458654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.74 E-value=2.9e-07 Score=83.47 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=65.0
Q ss_pred eeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc-cCCCCCccccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR-LPYPSRSFELAHCSRCR 288 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~-lpf~~~sFDlV~~s~~l 288 (617)
+.+|||+|||+|.++...+.+ .|+++|.++..+..++. .+...++. +.+..+|+.. ++...++||+|++.-
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEech--
Confidence 368999999999999877655 58999999877766663 44444443 5666677655 345678999998642
Q ss_pred cccccc-cceEEEEe--cccccCCceeeecC
Q 007128 289 IDWLQR-DGILLLEL--DRLLRPGGYFAYSS 316 (617)
Q Consensus 289 ~h~~~~-~~~~L~el--~RvLrPGG~lvis~ 316 (617)
++... ....+..+ .++|+|||.+++..
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11111 11233322 46899999999854
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.73 E-value=1.2e-06 Score=83.99 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=66.1
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC--Cccccccccccc-C-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI--PAYLGVLGTKRL-P-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~~d~~~l-p-----f~~~sFDlV 282 (617)
++|||+|||+|..+..|++. .|+++|+++.....++. .....|+ .+++..++.... | +..++||+|
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~-~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQ-MLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHH-HHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 58999999999888877653 58999999877776663 3344454 356666665432 2 445689999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.... ..... ....+.+..++|||||++++..
T Consensus 137 fiD~~-~~~~~-~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 137 FLDHW-KDRYL-PDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EECSC-GGGHH-HHHHHHHHTTCEEEEEEEEESC
T ss_pred eeccc-ccccc-cHHHHHHHhCccCCCcEEEEeC
Confidence 86532 11111 1124677889999999988754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.71 E-value=4.6e-07 Score=92.10 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc------ccchhhhhhhcccCCcchhhhhhh-
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL------IGSIHNWCEAYSTYPRTYDLLHAW- 527 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl------~~~~~~~~e~~~~~p~tfDlvh~~- 527 (617)
++|||++||+|+|+.+++..+. .|+.+|. +.+++.+.+. |+ .+...+|.+.+.....+||+|.++
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~---~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEE---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcCC---cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 4799999999999999986444 5666674 5666555433 43 123333333333334799999853
Q ss_pred --------hhhhhhhhcCCCcccchhhccccccCcceEEEecChh------HHHHHHHhhhhcccc
Q 007128 528 --------TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNWE 579 (617)
Q Consensus 528 --------~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w~ 579 (617)
.++.... +..+++...-++|||||.++++.-.. ..+.+.+.+...+.+
T Consensus 224 P~~~~~~~~~~~~~~----~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 224 PAFAKGKKDVERAYR----AYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL 285 (318)
T ss_dssp CCSCCSTTSHHHHHH----HHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CccccchHHHHHHHH----HHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence 1222111 33468888999999999999865321 333444444444443
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=4e-07 Score=95.29 Aligned_cols=101 Identities=7% Similarity=0.009 Sum_probs=59.3
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeeccc------------ccchh-hhhhhccc--
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDRGL------------IGSIH-NWCEAYST-- 516 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~rgl------------~~~~~-~~~e~~~~-- 516 (617)
++.+. +|||+|||.|.++..++.. ++- .|+++|. +.+++.|.++.- .+... .....|-.
T Consensus 214 Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~ 289 (406)
T d1u2za_ 214 LKKGD--TFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 289 (406)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred CCCCC--EEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence 44554 5999999999999988864 431 3455553 577776655421 00000 00011100
Q ss_pred -CC---cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 517 -YP---RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 517 -~p---~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
++ ...|+|.++.. .+.. ++..+|.||.|+|||||.+|..++.
T Consensus 290 ~~d~~~~~adVV~inn~-~f~~----~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 290 RVAELIPQCDVILVNNF-LFDE----DLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HHHHHGGGCSEEEECCT-TCCH----HHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccccccceEEEEecc-cCch----HHHHHHHHHHHhcCCCcEEEEeccc
Confidence 01 23445544322 2222 5678999999999999999998754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.6e-07 Score=89.34 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=57.8
Q ss_pred hhccccCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCC-CCceEEEeec----cc----ccchhhhhhh-cc
Q 007128 449 LLSPKIQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDG-PNTLKLIYDR----GL----IGSIHNWCEA-YS 515 (617)
Q Consensus 449 ~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~~~~e~-~~ 515 (617)
.|...++.+. +|||+|||+|.+++.|++. ... |..+|. +++++.|.++ ++ +..+...+.+ +.
T Consensus 69 ~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~---V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 69 LLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGK---VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCce---EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 4433344443 6999999999998888763 343 444453 4565555433 21 1111111111 11
Q ss_pred cCC--cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 516 TYP--RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 516 ~~p--~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
.++ ..||.|++..+..+ +..++-+.|||||.+++-
T Consensus 144 ~~~~~~~fD~I~~~~~~~~----------ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPV----------VPQALIDQLKPGGRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhh----------cCHHHHhhcCCCcEEEEE
Confidence 122 78999998666553 445677899999999983
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.67 E-value=1.4e-06 Score=82.05 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=76.5
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGT 269 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~ 269 (617)
..+.+.+.+.. .++ ..+||++||+|..+..++++ .|+++|.++.++..++.... ..+.++.+...+.
T Consensus 11 ll~evi~~l~~------~~~--~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~-~~~~r~~~~~~~f 81 (192)
T d1m6ya2 11 MVREVIEFLKP------EDE--KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSY 81 (192)
T ss_dssp THHHHHHHHCC------CTT--CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCG
T ss_pred HHHHHHHhhCC------CCC--CEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc-cccccccchhHHH
Confidence 34566666654 333 68999999999999888775 58999999888777664332 2234455565554
Q ss_pred ccc-----CCCCCccccccccccc--ccc------ccccceEEEEecccccCCceeeecChh
Q 007128 270 KRL-----PYPSRSFELAHCSRCR--IDW------LQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 270 ~~l-----pf~~~sFDlV~~s~~l--~h~------~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
..+ .+..++||.|+..... .+. .......|..+.++|+|||.+++..+.
T Consensus 82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 443 3445788888654321 111 111235788899999999999986543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.62 E-value=2.2e-06 Score=86.47 Aligned_cols=104 Identities=9% Similarity=0.077 Sum_probs=69.6
Q ss_pred eeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCC---Cccccccccccc----CCCCCcccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGI---PAYLGVLGTKRL----PYPSRSFELAHCS 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~---~~~~~~~d~~~l----pf~~~sFDlV~~s 285 (617)
+.+|||+.||+|.++..++.. .|++||.|...++.++.+. ..+++ ++.+.+.|+... ....+.||+|++.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~-~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQ-VLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-HHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhh-hhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 468999999999999888765 5999999998888887443 33444 356777776442 2234689999974
Q ss_pred cccc-------cc--ccccceEEEEecccccCCceeeecChhh
Q 007128 286 RCRI-------DW--LQRDGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 286 ~~l~-------h~--~~~~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
--.+ .+ ..+...++..+.++|+|||.+++.+...
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 2100 11 1111235556778999999877654333
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=6.1e-07 Score=91.55 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=58.2
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec-----------cc-ccchhhhhhhcccCC-
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR-----------GL-IGSIHNWCEAYSTYP- 518 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r-----------gl-~~~~~~~~e~~~~~p- 518 (617)
+..+. .|||+|||+|.++..++.. +. .+++++|. +.+++.|.+. |+ .+.+.-.+.++...|
T Consensus 149 l~~~~--~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~ 224 (328)
T d1nw3a_ 149 MTDDD--LFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW 224 (328)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH
T ss_pred CCCCC--EEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc
Confidence 44444 5999999999999877643 33 14555553 4555554332 11 111221222222222
Q ss_pred --cch--hhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 519 --RTY--DLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 519 --~tf--Dlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
..| |+|.++. +.|.. ++..+|.||.|+|||||.+|+.++
T Consensus 225 ~~~~~~advi~~~~-~~f~~----~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 225 RERIANTSVIFVNN-FAFGP----EVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp HHHHHHCSEEEECC-TTTCH----HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccCcceEEEEcc-eecch----HHHHHHHHHHHhCCCCcEEEEecc
Confidence 445 4555432 22233 567899999999999999998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2.6e-06 Score=81.84 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=66.5
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccccccccc-cC-----CCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLGVLGTKR-LP-----YPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~~~d~~~-lp-----f~~~sFDlV 282 (617)
++|||||||+|..+.++++. .++++|.++.....++ +...+.|.. +.+..+++.. ++ ...++||+|
T Consensus 61 k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~-~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH-HHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 68999999999888888753 5899999997777666 333444443 4555555432 21 235789999
Q ss_pred cccccccccccccceEEEEecccccCCceeeecC
Q 007128 283 HCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 283 ~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+...- ......++..+.++|+|||.+++..
T Consensus 140 fiD~d----k~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 140 VVDAD----KENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEeCC----HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 85422 2222346778889999999999964
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.51 E-value=4.6e-06 Score=81.24 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeecc-cccchhhhhhhcccCCcchhhhhhhhhhhh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRG-LIGSIHNWCEAYSTYPRTYDLLHAWTVFSD 532 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rg-l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~ 532 (617)
..+++.|||+|||.|.++.+|+++ +. .++..|.+.+++.+.+.. +....++..+++|. .|++...+++++
T Consensus 79 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~ 151 (243)
T d1kyza2 79 FEGLKSLVDVGGGTGAVINTIVSKYPTI---KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHD 151 (243)
T ss_dssp TSSCSEEEEETCTTSHHHHHHHHHCTTS---EEEEEECTTTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTT
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCC---eEEEcccHHhhhhcccCCceEEecccccccCCC----cceEEEEEEeec
Confidence 356889999999999999999975 33 223333333333332222 22334454444432 244444445553
Q ss_pred hhhcCCCcccchhhccccccCcceEEEecCh
Q 007128 533 IEKRGCSGEDLLLEMDRILRPTGFVIIRDKQ 563 (617)
Q Consensus 533 ~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~ 563 (617)
.... +...+|.++.+.|+|||.++|.|..
T Consensus 152 ~~d~--~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 152 WSDE--HCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp SCHH--HHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred CCHH--HHHHHHHHHHHhcCCCceEEEEEEE
Confidence 3222 3457999999999999999998653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.37 E-value=1.3e-06 Score=84.29 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=55.1
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeeccc-ccchhhhhhh-cccCC--cchhhhhhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDRGL-IGSIHNWCEA-YSTYP--RTYDLLHAWTV 529 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~rgl-~~~~~~~~e~-~~~~p--~tfDlvh~~~~ 529 (617)
++.+. +|||+|||+|.+++.|++....|..|... +..++.|.++-- ..++.-...+ +..+| ..||.|++...
T Consensus 68 l~~g~--~VLdIG~GsGy~ta~La~l~~~V~aiE~~--~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a 143 (224)
T d1vbfa_ 68 LHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEIN--EKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT 143 (224)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred hcccc--eEEEecCCCCHHHHHHHHHhccccccccc--HHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcc
Confidence 44444 69999999999999999876654444322 344444433311 1111111111 22244 67999998655
Q ss_pred hhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 530 FSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
..+ +..++-+.|||||.+|+-
T Consensus 144 ~~~----------ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 144 APT----------LLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp BSS----------CCHHHHHTEEEEEEEEEE
T ss_pred hhh----------hhHHHHHhcCCCCEEEEE
Confidence 542 334455789999999883
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=3.3e-05 Score=75.36 Aligned_cols=91 Identities=12% Similarity=0.249 Sum_probs=58.7
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCcccc--c
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLG--V 266 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~--~ 266 (617)
.|...+.+++.... .......+|||+|||+|.++..|+.+ .++|+|+++..++.|+. .+...++...+. .
T Consensus 43 ~~~~~i~~l~~~~~---~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~-N~~~n~l~~~~~~~~ 118 (250)
T d2h00a1 43 NYIHWVEDLIGHQD---SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVVK 118 (250)
T ss_dssp HHHHHHHHHHCCCC---GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHhhhhc---cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHH-HHHHhCCCcceeeee
Confidence 46667777765411 11223458999999999888888764 69999999998888874 444555543322 2
Q ss_pred cccccc------CCCCCcccccccccc
Q 007128 267 LGTKRL------PYPSRSFELAHCSRC 287 (617)
Q Consensus 267 ~d~~~l------pf~~~sFDlV~~s~~ 287 (617)
.+.... ...+++||+|+|+--
T Consensus 119 ~~~~~~~~~~~~~~~~~~fD~ivsNPP 145 (250)
T d2h00a1 119 VPQKTLLMDALKEESEIIYDFCMCNPP 145 (250)
T ss_dssp CCTTCSSTTTSTTCCSCCBSEEEECCC
T ss_pred eccHHhhhhhhhhcccCceeEEEecCc
Confidence 221111 123568999998854
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.36 E-value=3.3e-05 Score=75.18 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=62.3
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
..++.+.+.+.. .. ..+|||||||+|.++..|++. .|+++|+++.++...+..+.. ..++.+..+|+.
T Consensus 16 ~ii~kIv~~~~~------~~--~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l 85 (245)
T d1yuba_ 16 KVLNQIIKQLNL------KE--TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDIL 85 (245)
T ss_dssp TTHHHHHHHCCC------CS--SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCT
T ss_pred HHHHHHHHhcCC------CC--CCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--ccchhhhhhhhh
Confidence 345667777765 33 378999999999999999875 599999999877666533322 235778888999
Q ss_pred ccCCCCCcccccccc
Q 007128 271 RLPYPSRSFELAHCS 285 (617)
Q Consensus 271 ~lpf~~~sFDlV~~s 285 (617)
+++++...++.|+++
T Consensus 86 ~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 86 QFQFPNKQRYKIVGN 100 (245)
T ss_dssp TTTCCCSSEEEEEEE
T ss_pred ccccccceeeeEeee
Confidence 888887777777755
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.34 E-value=9e-06 Score=82.48 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccc-------cchhhhhhhcccCCcchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLI-------GSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~-------~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
+|||++||+|+|+.+++..|.. .|+.+|. +.+++.+.+. |+- +...+|...+..-..+||+|.++-
T Consensus 148 ~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp 225 (324)
T d2as0a2 148 RVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 225 (324)
T ss_dssp EEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred eeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence 6999999999999999888752 3455553 4555544332 442 333333333332237899997521
Q ss_pred ---------hhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 529 ---------VFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 529 ---------~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.+.-.. +...++...-++|||||.++++..
T Consensus 226 P~~~~~~~~~~~~~~----~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 226 PAFVQHEKDLKAGLR----AYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCSCSSGGGHHHHHH----HHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred ccccCCHHHHHHHHH----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 111111 234578888899999999998653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=1.5e-05 Score=78.72 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccc
Q 007128 435 DTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGS 506 (617)
Q Consensus 435 D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~ 506 (617)
+|+.+-+.+..+.... ....|+|+|||+|.++.+++..+-. .|+.+|. +..+++|.+. |+ +..
T Consensus 94 eTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i 164 (271)
T d1nv8a_ 94 ETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFV 164 (271)
T ss_dssp THHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEE
Confidence 3566666665544322 2346899999999988888765321 4666663 4555555443 33 222
Q ss_pred hh-hhhhhcccCCcchhhhhhhh-------hhhhhhhcC--------CCcccchhh-ccccccCcceEEEecChhHHHHH
Q 007128 507 IH-NWCEAYSTYPRTYDLLHAWT-------VFSDIEKRG--------CSGEDLLLE-MDRILRPTGFVIIRDKQSVVDFV 569 (617)
Q Consensus 507 ~~-~~~e~~~~~p~tfDlvh~~~-------~~~~~~~~~--------c~~~~~l~E-m~RiLrPgG~~ii~~~~~~~~~~ 569 (617)
++ +|.+.++.....||+|.|+= ..+..-.+. .|-.+++.+ +.++|+|||++++-...+--+.+
T Consensus 165 ~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v 244 (271)
T d1nv8a_ 165 RKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEEL 244 (271)
T ss_dssp EESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred eecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHH
Confidence 33 45555544347899997641 111000000 000111111 35789999999998888888889
Q ss_pred HHhhhhcccccccccccCCCCCCCCCCeEEEEEEec
Q 007128 570 KKYLRALNWEAVATTADASSDSDKDGDEVVFIVQKK 605 (617)
Q Consensus 570 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K~ 605 (617)
+++++..+|- .| . .+.+++++++|+
T Consensus 245 ~~l~~~~g~~-----kD--l----~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 245 KKIVSDTVFL-----KD--S----AGKYRFLLLNRR 269 (271)
T ss_dssp TTTSTTCEEE-----EC--T----TSSEEEEEEECC
T ss_pred HHHHHhCCEE-----ec--c----CCCcEEEEEEEc
Confidence 9999987773 23 2 468899999985
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.22 E-value=1.6e-05 Score=76.52 Aligned_cols=108 Identities=10% Similarity=0.139 Sum_probs=72.4
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC--cccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP--AYLG 265 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~--~~~~ 265 (617)
++...+.+..+. ++||+||+++|..+..|++. .++++|.++.....|+ +...+.|.. +.+.
T Consensus 49 ~~L~~L~~~~~~-----------k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~~ 116 (227)
T d1susa1 49 QFLSMLLKLINA-----------KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFR 116 (227)
T ss_dssp HHHHHHHHHHTC-----------CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEE
T ss_pred HHHHHHHHhcCC-----------CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceeee
Confidence 455566666543 68999999999888888753 5889999987766665 334444543 4555
Q ss_pred cccccc-cC------CCCCccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 266 VLGTKR-LP------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 266 ~~d~~~-lp------f~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+++.. ++ ...++||+|+... +.......+..+.+.|+|||.+++..
T Consensus 117 ~g~a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 117 EGPALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp ESCHHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred ehHHHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 555432 22 1246899998542 22333457777889999999999863
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.21 E-value=2e-05 Score=79.54 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=75.8
Q ss_pred CceeEEEeecccccccccccccc---------hhhhhccCCCccchhhhHHHHHhCCCcccccccccccCCCCCcccccc
Q 007128 213 GRLRTVLDVGCGVASFGAYLLSS---------DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAH 283 (617)
Q Consensus 213 ~~~~~VLDVGCG~G~~~~~L~~~---------~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lpf~~~sFDlV~ 283 (617)
....+|||.+||+|.++..+..+ .++|+|+++..+..|... +...+....+...|.... .+...||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~-~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG-ADLQRQKMTLLHQDGLAN-LLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCTTSC-CCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHH-HHHhhhhhhhhccccccc-cccccccccc
Confidence 34578999999999988776532 478899988776666543 333455555555554333 3456899999
Q ss_pred ccccccccccc-----------------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhh
Q 007128 284 CSRCRIDWLQR-----------------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMC 341 (617)
Q Consensus 284 ~s~~l~h~~~~-----------------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~g 341 (617)
++--....... ...++..+.+.|+|||++++..|...-.... ...+++.+...+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~----~~~lR~~L~~~~ 264 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNG 264 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch----hHHHHHHHHhCC
Confidence 87321110000 0014677889999999999887765432221 234555554443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.21 E-value=5.9e-05 Score=70.90 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=68.7
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCcccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVL 267 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~ 267 (617)
...+.+.+++.. .. +.+|||.|||+|.|+..+.++ .++++|+++..+..+. ...+...
T Consensus 6 ~i~~~m~~l~~~------~~--~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~ 68 (223)
T d2ih2a1 6 EVVDFMVSLAEA------PR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILA 68 (223)
T ss_dssp HHHHHHHHHCCC------CT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEES
T ss_pred HHHHHHHHhcCC------CC--cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeee
Confidence 345566676654 33 368999999999998777653 4788888876544332 1222333
Q ss_pred cccccCCCCCccccccccccccccc--cc--------------------------cceEEEEecccccCCceeeecChhh
Q 007128 268 GTKRLPYPSRSFELAHCSRCRIDWL--QR--------------------------DGILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 268 d~~~lpf~~~sFDlV~~s~~l~h~~--~~--------------------------~~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
|..... ....||+|+++.-..... .. ...++..+.+.|+|||++++..|..
T Consensus 69 ~~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 69 DFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ehhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 433333 346799998763321110 00 0123456778999999999987765
Q ss_pred hcCC
Q 007128 320 YAQD 323 (617)
Q Consensus 320 ~~~~ 323 (617)
.-..
T Consensus 148 ~l~~ 151 (223)
T d2ih2a1 148 WLVL 151 (223)
T ss_dssp GGTC
T ss_pred eccC
Confidence 4433
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=5e-05 Score=74.90 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=48.6
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCc--ccccccccc-cCCCCCcccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPA--YLGVLGTKR-LPYPSRSFELAHCS 285 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~--~~~~~d~~~-lpf~~~sFDlV~~s 285 (617)
.+|||+|||+|..+..++.. .|+++|+++..+..|+ +.+...++.. .+...+... ++...+.||+|+|+
T Consensus 112 ~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 57999999999877776543 5999999998888887 4566666543 333344332 22234689999987
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.18 E-value=6.4e-06 Score=81.80 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=72.6
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHH----------h
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALE----------R 258 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~----------r 258 (617)
..|.+.+....-. ...+.++||.+|+|.|..+..+++. .|+++|+++..+..++.-+... .
T Consensus 56 ~~Yhe~l~~~~l~------~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~ 129 (276)
T d1mjfa_ 56 RSYHEPLVHPAML------AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGK 129 (276)
T ss_dssp HHHHHHHHHHHHH------HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTC
T ss_pred hHHHHHhhcchhh------cCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccC
Confidence 3577776553222 2233478999999999988887765 4777888886665554211110 1
Q ss_pred CCCcccccccccccCCCCCcccccccccccccccccc----ceEEEEecccccCCceeeecC
Q 007128 259 GIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 259 g~~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~ 316 (617)
...+.+...|+...--.+++||+|++... .+..... ..+++.+.+.|+|||.++.-.
T Consensus 130 d~rv~i~~~Da~~~l~~~~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 130 HEKAKLTIGDGFEFIKNNRGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CSSEEEEESCHHHHHHHCCCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceEEEChHHHHHhccCCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 23456666665433223578999986422 2211110 247888999999999998854
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=9e-06 Score=79.98 Aligned_cols=110 Identities=12% Similarity=0.214 Sum_probs=69.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchhhhhhhcccCC--cchhhhhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEAYSTYP--RTYDLLHAWTVFSDI 533 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~~~~~p--~tfDlvh~~~~~~~~ 533 (617)
+|||||||+|+|+..++.++. -.|..+|. +..++.+.+. |+-..+.-.+.+...++ ..||.|..+..
T Consensus 110 ~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p---- 183 (260)
T d2frna1 110 LVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV---- 183 (260)
T ss_dssp EEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC----
T ss_pred EEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC----
Confidence 699999999999999887763 14566663 4554444332 44222222233333343 78998875311
Q ss_pred hhcCCCcccchhhccccccCcceEEEecCh-------hHHHHHHHhhhhccccc
Q 007128 534 EKRGCSGEDLLLEMDRILRPTGFVIIRDKQ-------SVVDFVKKYLRALNWEA 580 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~-------~~~~~~~~~~~~~~w~~ 580 (617)
+.-...|.+.-++|+|||++.+-+.. ...+.+++++...++++
T Consensus 184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 233 (260)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ----CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence 13356777888999999998654322 14566778887777766
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=3.9e-05 Score=71.18 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=63.4
Q ss_pred eEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC-Ccccccccccc-cCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKR-LPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~h 290 (617)
.+|||++||+|.++...+.+ .|+.+|.++..+...+.... ..+. +..+...|+.. +......||+|++.- +
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~-~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---P 120 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA-TLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---P 120 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH-HTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---S
T ss_pred hhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHh-hccccceeeeeecccccccccccccCEEEEcC---c
Confidence 58999999999999887776 48899998877776664433 3333 45555566543 344567899998652 1
Q ss_pred cccc-cceEEEEe--cccccCCceeeecC
Q 007128 291 WLQR-DGILLLEL--DRLLRPGGYFAYSS 316 (617)
Q Consensus 291 ~~~~-~~~~L~el--~RvLrPGG~lvis~ 316 (617)
+... ....+..+ ..+|+++|++++..
T Consensus 121 Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 121 FRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp SSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2111 12233333 34689999999853
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.93 E-value=1.2e-05 Score=78.26 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCCCCceEEEeecc-cccchhhhhhhcccCCcchhhhhhhhhhhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDGPNTLKLIYDRG-LIGSIHNWCEAYSTYPRTYDLLHAWTVFSDI 533 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~~~~l~~~~~rg-l~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~ 533 (617)
.++++|+|+|||+|.++.+++++ +. .++-.|.+..++.+.... +--.-+|..++ . ..+|+++..+++++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~---~-p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKL---KCIVFDRPQVVENLSGSNNLTYVGGDMFTS---I-PNADAVLLKYILHNW 151 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCBTTEEEEECCTTTC---C-CCCSEEEEESCGGGS
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCC---eEEEecCHHHHHhCcccCceEEEecCcccC---C-CCCcEEEEEeecccC
Confidence 56778999999999999999865 33 222233332222221111 11112232222 2 357999999999976
Q ss_pred hhcCCCcccchhhccccccCc---ceEEEecC
Q 007128 534 EKRGCSGEDLLLEMDRILRPT---GFVIIRDK 562 (617)
Q Consensus 534 ~~~~c~~~~~l~Em~RiLrPg---G~~ii~~~ 562 (617)
.+.. -..+|..+.+.|+|| |.++|.|.
T Consensus 152 ~d~~--~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 152 TDKD--CLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp CHHH--HHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ChHH--HHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 5332 257899999999999 77887765
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.93 E-value=4.4e-05 Score=70.83 Aligned_cols=113 Identities=15% Similarity=0.044 Sum_probs=71.1
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc---hhhhhccCCCccchhhhHHHHHhCC--Cccccc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGI--PAYLGV 266 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~--~~~~~~ 266 (617)
...-+.+.++|... . .+.+|||+.||+|.++...+.+ .|+.+|.+...+..++.. +...+. ++.+..
T Consensus 26 ~~vrealFn~l~~~-----~--~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N-~~~~~~~~~~~i~~ 97 (182)
T d2fhpa1 26 DKVKESIFNMIGPY-----F--DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKEN-IAITKEPEKFEVRK 97 (182)
T ss_dssp HHHHHHHHHHHCSC-----C--SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEE
T ss_pred HHHHHHHHHHHHHh-----c--CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHH-hhhhhccccccccc
Confidence 44556677777631 1 2368999999999999988876 488899888766665533 333333 355666
Q ss_pred cccccc----CCCCCccccccccccccccccc-cceEEEEec--ccccCCceeeec
Q 007128 267 LGTKRL----PYPSRSFELAHCSRCRIDWLQR-DGILLLELD--RLLRPGGYFAYS 315 (617)
Q Consensus 267 ~d~~~l----pf~~~sFDlV~~s~~l~h~~~~-~~~~L~el~--RvLrPGG~lvis 315 (617)
.|+.+. .-....||+|++.- ++... ....+..+. .+|+++|++++.
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 665432 22345799998642 22111 123444443 479999999884
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=9.4e-05 Score=68.48 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=73.9
Q ss_pred hhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEeecccccchhhhhhhcccCC-cchhhhhhhhhhh---
Q 007128 459 LRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIYDRGLIGSIHNWCEAYSTYP-RTYDLLHAWTVFS--- 531 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~~rgl~~~~~~~~e~~~~~p-~tfDlvh~~~~~~--- 531 (617)
-.+|||+||++|+|..++.++ ...+..+.-....+.-....-.|-+............+. ..||+|.|+..+.
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg 102 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSG 102 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCS
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcc
Confidence 346999999999999988764 223333333222111112222343333222222222222 6799998766643
Q ss_pred -----hhhhcCCCcccchhhccccccCcceEEEecChh-HHHHHHHhhhhcccccccccccCCCCCCCCCCeEEEEEEe
Q 007128 532 -----DIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-VVDFVKKYLRALNWEAVATTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 532 -----~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~K 604 (617)
|.. .-.-...+|.=..++|||||.||+.--.. ..+++...++. +++.+ .+.-++.- -+...|.+|+|+.
T Consensus 103 ~~~~d~~~-~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~-~F~~V-~~~KP~aS-R~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 103 TPAVDIPR-AMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKV-KVRKPDSS-RARSREVYIVATG 177 (180)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEE-EEECCTTS-CTTCCEEEEEEEE
T ss_pred cchhHHHH-HHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh-hcCEE-EEECCCCc-ccCCceEEEEEec
Confidence 111 00011244555678999999998765432 12233333332 33333 34433332 2467899999975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.83 E-value=2.8e-05 Score=78.42 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=74.3
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH-----hCCCc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE-----RGIPA 262 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~-----rg~~~ 262 (617)
..|.+.+....-. .....++||.||.|.|..+..+++. .|+++|+++..++.++..+... ....+
T Consensus 61 ~~Yhe~l~h~~l~------~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv 134 (312)
T d1uira_ 61 YIYHETLVHPAML------THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA 134 (312)
T ss_dssp HHHHHHHHHHHHH------HSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE
T ss_pred HHHHHHHhhhhhh------hCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCce
Confidence 3566666553211 1223478999999999998888754 5888899887776665333221 12345
Q ss_pred cccccccccc-CCCCCccccccccccccccccc-------cceEEEEecccccCCceeeecC
Q 007128 263 YLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 263 ~~~~~d~~~l-pf~~~sFDlV~~s~~l~h~~~~-------~~~~L~el~RvLrPGG~lvis~ 316 (617)
.+...|+... .-.+++||+|++... -.+..+ ...+++.+.+.|+|||.+++-.
T Consensus 135 ~i~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 135 VLVIDDARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEESCHHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEchHHHHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 6666675442 223468999985421 112111 1247788999999999998854
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.80 E-value=0.00014 Score=70.07 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=53.7
Q ss_pred HHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCcccccccccc
Q 007128 194 YIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR 271 (617)
Q Consensus 194 Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~ 271 (617)
.++.+.+.+.. . +..+|||||||+|.++..|++. .|+++|+++..+...+.+.. ...++.+..+|+..
T Consensus 9 i~~~iv~~~~~------~--~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~ 78 (235)
T d1qama_ 9 NIDKIMTNIRL------N--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHTTCCC------C--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGG
T ss_pred HHHHHHHhcCC------C--CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhh
Confidence 34555555543 2 3478999999999999999876 58999998765443332221 23457888889888
Q ss_pred cCCCCCccccccc
Q 007128 272 LPYPSRSFELAHC 284 (617)
Q Consensus 272 lpf~~~sFDlV~~ 284 (617)
++++......|++
T Consensus 79 ~~~~~~~~~~vv~ 91 (235)
T d1qama_ 79 FKFPKNQSYKIFG 91 (235)
T ss_dssp CCCCSSCCCEEEE
T ss_pred ccccccccceeee
Confidence 8776544334443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=3.8e-05 Score=73.48 Aligned_cols=131 Identities=13% Similarity=0.071 Sum_probs=75.8
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEe----eccc-------ccchhhhhhh-ccc-CC
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIY----DRGL-------IGSIHNWCEA-YST-YP 518 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~----~rgl-------~~~~~~~~e~-~~~-~p 518 (617)
...+-++||++|||+|--+.+|++. +..+..+.... ...+.|. .-|+ .|...+--.. +.. .+
T Consensus 56 ~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~--~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 56 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeech--hHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhccc
Confidence 3445678999999999988888763 55555554433 2222222 1233 2322221111 111 24
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh----------------HHHHHHHhhhhccccccc
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS----------------VVDFVKKYLRALNWEAVA 582 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~----------------~~~~~~~~~~~~~w~~~~ 582 (617)
.+||+|+.+.--+ +....+.++-+.|||||.+++.+..- +.+-.+.|.+.-+|..
T Consensus 134 ~~fD~ifiD~dk~-------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~-- 204 (219)
T d2avda1 134 GTFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYI-- 204 (219)
T ss_dssp TCEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEE--
T ss_pred CCccEEEEeCCHH-------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEE--
Confidence 7899998643222 33456667779999999999977632 1122344555567776
Q ss_pred ccccCCCCCCCCCCeEEEEEEe
Q 007128 583 TTADASSDSDKDGDEVVFIVQK 604 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~K 604 (617)
.+.- . ...+++|+|
T Consensus 205 ~llP--i------gdGl~ia~K 218 (219)
T d2avda1 205 SLLP--L------GDGLTLAFK 218 (219)
T ss_dssp EEEC--S------TTCEEEEEE
T ss_pred EEee--c------CCeeEEEEe
Confidence 3432 1 235899988
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.78 E-value=6.5e-05 Score=75.44 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=71.5
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH----HhCCCcc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL----ERGIPAY 263 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~----~rg~~~~ 263 (617)
..|.+.+....-. .....++||-||-|.|..+..+++. .|+.+|+++..++.++.-+.. .....+.
T Consensus 90 ~~YhE~l~h~pl~------~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~ 163 (312)
T d2b2ca1 90 FSYQEMLAHLPMF------AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLD 163 (312)
T ss_dssp SHHHHHHHHHHHH------HSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEE
T ss_pred HHHHHHhhhHHHh------cCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeE
Confidence 4577776553221 1223468999999999999999875 478888888666555421111 1113345
Q ss_pred ccccccccc-CCCCCcccccccccccccccccc----ceEEEEecccccCCceeeecChh
Q 007128 264 LGVLGTKRL-PYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 264 ~~~~d~~~l-pf~~~sFDlV~~s~~l~h~~~~~----~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+...|+... .-..++||+|++... ....... ..+++.+.+.|+|||.++.-...
T Consensus 164 i~i~Da~~~l~~~~~~yDvII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 164 LFCGDGFEFLKNHKNEFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EECSCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEchHHHHHHhCCCCCCEEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 555554322 223568999996432 1111110 23667889999999999986543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.73 E-value=0.00013 Score=72.54 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=77.2
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH----HhCCCcc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL----ERGIPAY 263 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~----~rg~~~~ 263 (617)
..|.+.+....-. ...+.++||=||-|.|..+..+++. .++.+|+++..++.++.-+.. .....+.
T Consensus 64 ~~Yhe~l~h~~~~------~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~ 137 (290)
T d1xj5a_ 64 CAYQEMITHLPLC------SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVN 137 (290)
T ss_dssp HHHHHHHHHHHHT------TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEE
T ss_pred hHHHHHHhhHHHh------hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcE
Confidence 3566666655443 2234578999999999999988875 478889988776666532211 1134455
Q ss_pred cccccccc-c-CCCCCccccccccccccccccc----cceEEEEecccccCCceeeecChh
Q 007128 264 LGVLGTKR-L-PYPSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 264 ~~~~d~~~-l-pf~~~sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+...|... + ...+++||+|+.... -..... ...+++.+.+.|+|||.++.-...
T Consensus 138 i~~~Da~~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 138 LVIGDGVAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EEESCHHHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEccHHHHHhhccccCccEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 66666433 2 234568999986422 111111 134788999999999999996543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=7.5e-05 Score=74.49 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=74.6
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAY 263 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~ 263 (617)
..|.+.+....-. .....++||-||.|.|..+..+++. .|+++|+++..++.++.-+... ....+.
T Consensus 73 ~~YhE~l~h~pl~------~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~ 146 (295)
T d1inla_ 73 FMYHEMLAHVPMF------LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAE 146 (295)
T ss_dssp HHHHHHHHHHHHH------HSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEE
T ss_pred hhhhhhhcchhHh------hCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcE
Confidence 4566666543221 1223479999999999999888875 4788899887776665322221 123456
Q ss_pred cccccccc-cCCCCCccccccccccccccccc-----cceEEEEecccccCCceeeecChh
Q 007128 264 LGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 264 ~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~-----~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+...|+.. +.-.++.||+|++... -+.... ...+++.+.+.|+|||.++.-...
T Consensus 147 v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 147 IVIANGAEYVRKFKNEFDVIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEhhhHHHHHhcCCCCCCEEEEcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 66666433 2223568999996422 221111 134778899999999999986543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.71 E-value=2.6e-05 Score=74.32 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=59.0
Q ss_pred ccCccchhhHHHhhhcchhhHhhhcCC---ceEEEEeecCCCCCceEEEe----eccc-------ccchhhhhhhcc-cC
Q 007128 453 KIQSNSLRNLMDMKAHLGSFAAALKEK---DVWVMSVVPEDGPNTLKLIY----DRGL-------IGSIHNWCEAYS-TY 517 (617)
Q Consensus 453 ~i~~~~~r~vLD~g~G~G~fa~~L~~~---~~~v~~v~~~~~~~~l~~~~----~rgl-------~~~~~~~~e~~~-~~ 517 (617)
++...+-++||++|||+|..+.+|++. +..+..|... +++++.|. ..|+ .|...+.-..+. .+
T Consensus 51 lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~--~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~ 128 (214)
T d2cl5a1 51 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMN--PDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY 128 (214)
T ss_dssp HHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHS
T ss_pred HHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEecc--HHHHHHHHHHHHHcCCCccceeeeccccccccchhhcc
Confidence 344455678999999999999988863 5555444432 23333332 2244 233333221111 13
Q ss_pred C-cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 518 P-RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 518 p-~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+ .+||+|+.++-.+.. .....+.|..|+|||||.+|+.|
T Consensus 129 ~~~~~D~ifiD~~~~~~-----~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 129 DVDTLDMVFLDHWKDRY-----LPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CCCCEEEEEECSCGGGH-----HHHHHHHHHTTCEEEEEEEEESC
T ss_pred cccccceeeeccccccc-----ccHHHHHHHhCccCCCcEEEEeC
Confidence 2 689999865332211 11235777889999999877765
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.70 E-value=1.9e-05 Score=71.11 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=55.4
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhcccCCcchhhhhhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAYSTYPRTYDLLHAWTVF 530 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~~~~p~tfDlvh~~~~~ 530 (617)
.+|||++||+|+|+...+.+|.. +|+.+|. +++++.+.+. |+ +-.++ |..+.+......||+|.++-=|
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 36999999999999877778763 6777774 4444433222 22 22222 2212222223889999874211
Q ss_pred hh--hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 531 SD--IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 531 ~~--~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.. .. ...+.+.+ .++|+|||.+++...
T Consensus 94 ~~~~~~----~~l~~i~~-~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 94 AKETIV----ATIEALAA-KNLLSEQVMVVCETD 122 (152)
T ss_dssp HHHHHH----HHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred ccchHH----HHHHHHHH-CCCcCCCeEEEEEeC
Confidence 10 00 11123333 379999999998654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.67 E-value=1.9e-05 Score=74.32 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=63.8
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecccccchhhhhhhcccCCcchhhhhhhhhhhhhhhcCC
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGLIGSIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRGC 538 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl~~~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c 538 (617)
++|||+|||+|.++..++..|.. +|+.+|. +.+++.|.+.. ..+...+.++..+++.||+|.++--|--.. ...
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~-~~~ 124 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNC--GGVNFMVADVSEISGKYDTWIMNPPFGSVV-KHS 124 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHC--TTSEEEECCGGGCCCCEEEEEECCCC--------
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHcc--ccccEEEEehhhcCCcceEEEeCcccchhh-hhc
Confidence 46999999999998888877653 4666664 56666554432 223333455666789999998864442111 111
Q ss_pred CcccchhhccccccCcceEEEecChhHHHHHHHhhhh
Q 007128 539 SGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRA 575 (617)
Q Consensus 539 ~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~ 575 (617)
|. .+ ++..+.+++.++..+.....+.+++.+..
T Consensus 125 D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 125 DR--AF--IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred hH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 21 12 23456667776666666666666665544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00016 Score=71.71 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=73.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHH----HhCCCcc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFAL----ERGIPAY 263 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~----~rg~~~~ 263 (617)
..|.+.+....-. .....++||-||-|.|..+..+++. .|+.+|+++..++.++.-+.. .....+.
T Consensus 62 ~~Yhe~l~h~~l~------~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~ 135 (285)
T d2o07a1 62 FSYQEMIANLPLC------SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLT 135 (285)
T ss_dssp HHHHHHHHHHHHT------TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEE
T ss_pred HHHHHHhccHhhh------hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCce
Confidence 4566656544322 2233478999999999999998875 478888888777666533221 1124456
Q ss_pred cccccccc-cCCCCCccccccccccccccccc----cceEEEEecccccCCceeeecC
Q 007128 264 LGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 264 ~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~ 316 (617)
+...|+.. +.-..++||+|++... ...... ...+++.+.+.|+|||.+++-.
T Consensus 136 i~~~Da~~~l~~~~~~yDvIi~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 136 LHVGDGFEFMKQNQDAFDVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEESCHHHHHHTCSSCEEEEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEccHHHHHhcCCCCCCEEEEcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 66666433 2234568999996522 111111 0236778899999999999864
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.49 E-value=0.00041 Score=66.83 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC----CCceEEEeec-cc--cc
Q 007128 435 DTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG----PNTLKLIYDR-GL--IG 505 (617)
Q Consensus 435 D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~----~~~l~~~~~r-gl--~~ 505 (617)
..+.|.+++.+=...+ ..+......+|+|+|+|.| |+--+++..+. +++-+|+ -..|+.+..+ || +-
T Consensus 48 ~~~i~~rHi~DSl~~~-~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAA-FYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp HHHHHHHTHHHHHGGG-GTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHhccchhhhh-hhhcccCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 4577877776544333 2344445567999999999 44444444455 3444443 2344333333 55 34
Q ss_pred chhhhhhhccc---CCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHH---HHhhhhcccc
Q 007128 506 SIHNWCEAYST---YPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFV---KKYLRALNWE 579 (617)
Q Consensus 506 ~~~~~~e~~~~---~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~---~~~~~~~~w~ 579 (617)
.+|.-.|.+.. +...||+|.|- +|. .+..++.-....|+|||.+++--.....+|+ ++.+..++++
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~sR-Ava-------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~ 195 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTAR-AVA-------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGE 195 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEE-CCS-------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEE
T ss_pred EEeehhhhccccccccccceEEEEh-hhh-------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCE
Confidence 56666666543 33789999873 333 4566777778999999999998777655554 5566666776
Q ss_pred cccccccCCCCCCCCCCeEEEEEEeccccc
Q 007128 580 AVATTADASSDSDKDGDEVVFIVQKKIWLT 609 (617)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~K~~w~~ 609 (617)
.. .+..- .-|.....-.+++.+|.-=++
T Consensus 196 ~~-~v~~~-~lp~~~~~r~lv~i~K~~~~p 223 (239)
T d1xdza_ 196 LE-NIHSF-KLPIEESDRNIMVIRKIKNTP 223 (239)
T ss_dssp EE-EEEEE-ECTTTCCEEEEEEEEECSCCC
T ss_pred EE-EEEEE-eCCCCCCCEEEEEEEECCCCC
Confidence 52 22210 112334456788888754333
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=6.1e-05 Score=70.50 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=69.6
Q ss_pred hHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeeccc-----ccchhhhhh----hcccCC-cchhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDRGL-----IGSIHNWCE----AYSTYP-RTYDLLHAW 527 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~rgl-----~~~~~~~~e----~~~~~p-~tfDlvh~~ 527 (617)
.|||++||+||++.+++++ ++ .|..+|. +.|++.|.++.- +-.++.... -...+. ++||.|..+
T Consensus 26 ~~lD~t~G~Gghs~~il~~~~~~---~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 26 IILDCTVGEGGHSRAILEHCPGC---RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp EEEETTCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHhcCCCC---eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 6999999999999999875 33 5777774 688887776531 222332222 223343 677766533
Q ss_pred hhhhh--h---hhcCCCcccchhhccccccCcceEEEecChhHHHH-HHHhhh
Q 007128 528 TVFSD--I---EKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDF-VKKYLR 574 (617)
Q Consensus 528 ~~~~~--~---~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~-~~~~~~ 574 (617)
.-.|. + ...-......|.++.++|+|||.+++-...+..++ ++++++
T Consensus 103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~ 155 (192)
T d1m6ya2 103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR 155 (192)
T ss_dssp CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence 21110 0 00001345789999999999999988888775553 555554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=96.41 E-value=6.1e-05 Score=69.06 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=55.1
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----ccccchh-hhhhhc---ccCC-cchhhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GLIGSIH-NWCEAY---STYP-RTYDLLHAWTVF 530 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~-~~~e~~---~~~p-~tfDlvh~~~~~ 530 (617)
+|||++||+|+++...+.++.. |+.+|. +.+++.+.+. |+-..++ ..+..| .... ..||+|.++==|
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred eEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc
Confidence 6999999999999998888884 445674 5555544322 3311111 111111 1112 689999763111
Q ss_pred hhhhhcCCCcccchhhc--cccccCcceEEEecCh
Q 007128 531 SDIEKRGCSGEDLLLEM--DRILRPTGFVIIRDKQ 563 (617)
Q Consensus 531 ~~~~~~~c~~~~~l~Em--~RiLrPgG~~ii~~~~ 563 (617)
. -+....+.++ ..+|+|||.+++.++.
T Consensus 121 ~------~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 121 A------MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp T------SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred c------cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 1 0223344443 3589999999997654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=96.41 E-value=9.6e-05 Score=74.48 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=64.5
Q ss_pred hhHHHhhhcchhhHhhhcCCce-EEEEeecCCCCCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDV-WVMSVVPEDGPNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~-~v~~v~~~~~~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+.||+|+|+.+++..+. .|.+|... +..++.+.+. |+ .+..-+|...+..-.+.||+|.+
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s--~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLA--KRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESC--TTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCC--HHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 4799999999999988877665 44444332 3444433322 33 23333343332222368999985
Q ss_pred hh-hhhhhhhcCC----CcccchhhccccccCcceEEEecChh------HHHHHHHhhhhccccc
Q 007128 527 WT-VFSDIEKRGC----SGEDLLLEMDRILRPTGFVIIRDKQS------VVDFVKKYLRALNWEA 580 (617)
Q Consensus 527 ~~-~~~~~~~~~c----~~~~~l~Em~RiLrPgG~~ii~~~~~------~~~~~~~~~~~~~w~~ 580 (617)
+- .|..-.+..- +..+++...-++|+|||.++++.... ..+.+.+.+..-++..
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~ 288 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTY 288 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeE
Confidence 30 0110000000 22356777789999999999865432 2333444444444443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.34 E-value=0.00016 Score=71.24 Aligned_cols=120 Identities=11% Similarity=0.062 Sum_probs=75.7
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHH----hCCCcc
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALE----RGIPAY 263 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~----rg~~~~ 263 (617)
..|.+.+....-. .....++||-||-|.|..+..++++ .|+.+|+++..++.++.-+... ...++.
T Consensus 59 ~~Yhe~l~h~~l~------~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~ 132 (274)
T d1iy9a_ 59 FVYHEMVAHVPLF------THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVD 132 (274)
T ss_dssp HHHHHHHHHHHHH------HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEE
T ss_pred hhchhhhccchhh------ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeE
Confidence 3566655543222 1223468999999999999998875 4788899887776665333221 123455
Q ss_pred cccccccc-cCCCCCccccccccccccccccc----cceEEEEecccccCCceeeecChh
Q 007128 264 LGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 264 ~~~~d~~~-lpf~~~sFDlV~~s~~l~h~~~~----~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+...|+.. +.-.+++||+|+.... .+.... ...+++.+.+.|+|||.++.-...
T Consensus 133 i~~~D~~~~l~~~~~~yDvIi~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 133 VQVDDGFMHIAKSENQYDVIMVDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp EEESCSHHHHHTCCSCEEEEEESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEechHHHHHhhcCCCCCEEEEcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 66666533 2234578999986422 211111 134788899999999999986433
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.001 Score=67.32 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=79.3
Q ss_pred CeEEEeCceeecCCCCccccCchh----hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhcc
Q 007128 169 NWMVVKGEKIIFPGGGTHFHYGAD----KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSL 242 (617)
Q Consensus 169 ~w~~~~~~~~~Fpgg~~~F~~~a~----~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDi 242 (617)
-|....+-.+.+ ....|.+... .+.+.+.+++.. .+ ..+|||+-||+|.++..|++. .|+|+|.
T Consensus 173 ~~~~~~g~~~~i--~p~sFfQ~N~~~~e~l~~~v~~~~~~------~~--~~~vlDLycG~G~fsl~La~~~~~V~gvE~ 242 (358)
T d1uwva2 173 PWYDSNGLRLTF--SPRDFIQVNAGVNQKMVARALEWLDV------QP--EDRVLDLFCGMGNFTLPLATQAASVVGVEG 242 (358)
T ss_dssp CEEEETTEEEEC--CSSSCCCSBHHHHHHHHHHHHHHHTC------CT--TCEEEEESCTTTTTHHHHHTTSSEEEEEES
T ss_pred eEEecCCEEEEE--CCchhhccchhhhhHHHHHHHHhhcc------CC--CceEEEecccccccchhccccccEEEeccC
Confidence 344444434444 3445666543 344445555543 22 368999999999999999875 6999999
Q ss_pred CCCccchhhhHHHHHhCC-Cccccccccccc----CCCCCccccccccccccccccccceEEEEecccccCCceeeecCh
Q 007128 243 APNDVHQNQIQFALERGI-PAYLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSP 317 (617)
Q Consensus 243 s~~dl~~a~~~~a~~rg~-~~~~~~~d~~~l----pf~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p 317 (617)
++..+..|+ +.+...++ ++.+..++.... +.....||+|+..--.-- ....+..+.+ ++|.-++++|..
T Consensus 243 ~~~ai~~A~-~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 243 VPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHH-HCCSEEEEEESC
T ss_pred cHHHHHHHH-HhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHH-cCCCEEEEEeCC
Confidence 998888777 45555565 466766665432 223467898874311000 0112333332 367777778753
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.00031 Score=66.35 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHhhccccCccchhhHHHhhhcch--hhHhhhcCCceEEEEeecCCC-CCceEEEe-eccc--ccchh
Q 007128 435 DTESWRNRVDSYWNLLSPKIQSNSLRNLMDMKAHLG--SFAAALKEKDVWVMSVVPEDG-PNTLKLIY-DRGL--IGSIH 508 (617)
Q Consensus 435 D~~~Wk~~V~~y~~~l~~~i~~~~~r~vLD~g~G~G--~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~-~rgl--~~~~~ 508 (617)
..+.|.+++-+=...+ +.+.. .+|+|+|+|.| |+--+++..+..+.=|..... -..|+.+. +=|| +-.+|
T Consensus 46 ~~~~~~rHi~DSl~~~-~~~~~---~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~ 121 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVA-PYLQG---ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ 121 (207)
T ss_dssp --CHHHHHHHHHHHHG-GGCCS---SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHhcchHhhh-hhhcC---CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeec
Confidence 3456766665323333 23432 26999999999 555555555553322333221 13333322 2255 33444
Q ss_pred hhhhhcccCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChhHHHHHHHhhhhcc
Q 007128 509 NWCEAYSTYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALN 577 (617)
Q Consensus 509 ~~~e~~~~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~ 577 (617)
.-.|.+.. ...||+|.| ..|. .+..++.-....|+|||.+++--.....+|++.+-+...
T Consensus 122 ~R~E~~~~-~~~fD~V~s-RA~~-------~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~~~~~ 181 (207)
T d1jsxa_ 122 SRVEEFPS-EPPFDGVIS-RAFA-------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQ 181 (207)
T ss_dssp CCTTTSCC-CSCEEEEEC-SCSS-------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCTTEE
T ss_pred cchhhhcc-ccccceehh-hhhc-------CHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhhcCCE
Confidence 44444321 268999876 3333 566777778899999999999988878888877655443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.13 E-value=8.8e-05 Score=74.37 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred hhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc--------ccchhhhhhhcccCCcchhhhhh
Q 007128 460 RNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL--------IGSIHNWCEAYSTYPRTYDLLHA 526 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl--------~~~~~~~~e~~~~~p~tfDlvh~ 526 (617)
++|||+.||+|+|+.+++..+.. |+.+|. +.+++.|.+. |+ .+.+.++........+.||+|.+
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 47999999999999999998884 555664 4565555442 33 12222222222212278999985
Q ss_pred h----------hhhhhhhhcCCCcccchhhccccccCcceEEEecChh-------HHHHHHHhhhhcccc
Q 007128 527 W----------TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS-------VVDFVKKYLRALNWE 579 (617)
Q Consensus 527 ~----------~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~-------~~~~~~~~~~~~~w~ 579 (617)
+ ..+. +.. ++..++..+.++|+|||.+++....+ ..+-+++.+......
T Consensus 211 DPP~f~~~~~~~~~~-~~~---~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~ 276 (309)
T d2igta1 211 DPPKFGRGTHGEVWQ-LFD---HLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGV 276 (309)
T ss_dssp CCCSEEECTTCCEEE-HHH---HHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSE
T ss_pred CCCcccccccchhHH-HHH---HHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCc
Confidence 2 0111 110 12345566778999999755543211 233355555555544
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.12 E-value=5.7e-05 Score=72.02 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=52.0
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec----ccccchhhhhhh-cccCC--cchhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR----GLIGSIHNWCEA-YSTYP--RTYDLL 524 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r----gl~~~~~~~~e~-~~~~p--~tfDlv 524 (617)
+..+. +|||+|||+|.+++.|+.. +.. |..++. +.+.+.+.++ |+ .++...+.+ +..+| ..||.|
T Consensus 76 l~~g~--~VLeIGsGsGY~taila~l~g~~---V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD~I 149 (215)
T d1jg1a_ 76 LKPGM--NILEVGTGSGWNAALISEIVKTD---VYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDVI 149 (215)
T ss_dssp CCTTC--CEEEECCTTSHHHHHHHHHHCSC---EEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCccc--eEEEecCCCChhHHHHHHhhCce---eEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcceeE
Confidence 44444 7999999999999998864 322 333332 3343333332 22 111111111 22233 889999
Q ss_pred hhhhhhhhhhhcCCCcccchhhccccccCcceEEE
Q 007128 525 HAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVII 559 (617)
Q Consensus 525 h~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii 559 (617)
++.....++ ...|. .-|||||.+++
T Consensus 150 iv~~a~~~i-------p~~l~---~qL~~gGrLv~ 174 (215)
T d1jg1a_ 150 IVTAGAPKI-------PEPLI---EQLKIGGKLII 174 (215)
T ss_dssp EECSBBSSC-------CHHHH---HTEEEEEEEEE
T ss_pred EeecccccC-------CHHHH---HhcCCCCEEEE
Confidence 986655533 23333 56999999987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.12 E-value=3.9e-05 Score=73.57 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=50.6
Q ss_pred hHHHhhhcchhhHhhhcCC----ce-EEEEeecCCC-CCceEEEeec----cc----ccchhhhhhh-cccCC--cchhh
Q 007128 461 NLMDMKAHLGSFAAALKEK----DV-WVMSVVPEDG-PNTLKLIYDR----GL----IGSIHNWCEA-YSTYP--RTYDL 523 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~----~~-~v~~v~~~~~-~~~l~~~~~r----gl----~~~~~~~~e~-~~~~p--~tfDl 523 (617)
+|||+|||+|-+++.|++. ++ ....|..++. +.+++.|.++ ++ +.++.....+ ...+| ..||.
T Consensus 83 ~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~ 162 (223)
T d1r18a_ 83 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNA 162 (223)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEE
T ss_pred eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceee
Confidence 6999999999999998764 21 0001333332 3444444332 00 1111111111 12233 78999
Q ss_pred hhhhhhhhhhhhcCCCcccchhhccccccCcceEEEe
Q 007128 524 LHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIR 560 (617)
Q Consensus 524 vh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~ 560 (617)
|++.....++ -..+-+.|||||.+++-
T Consensus 163 Iiv~~a~~~~----------p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 163 IHVGAAAPDT----------PTELINQLASGGRLIVP 189 (223)
T ss_dssp EEECSCBSSC----------CHHHHHTEEEEEEEEEE
T ss_pred EEEEeechhc----------hHHHHHhcCCCcEEEEE
Confidence 9986665532 23456899999999873
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.76 E-value=0.0003 Score=70.63 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccc----
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHC---- 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~---- 284 (617)
+.+|||+.||.|.=+..++.. .+++.|+++.-+..... ...+.++ ++.+...|...++..+..||.|++
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~-~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 195 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHH-HHHHHHhhccccccccccccccccccccEEEEcccc
Confidence 378999999999765555432 37888887755544432 2233343 455555666666666788999975
Q ss_pred cc-ccccccc---------c-------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHHhhhh
Q 007128 285 SR-CRIDWLQ---------R-------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWR 343 (617)
Q Consensus 285 s~-~l~h~~~---------~-------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~~gf~ 343 (617)
+. ..+.-.+ + ...+|..+.+.|||||+++.++=...+...+ +.++.++++.+++
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE-----~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE-----FVIQWALDNFDVE 266 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHSSEE
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHH-----HHHHHHHhcCCCE
Confidence 21 1111000 0 0137778888999999999986555443333 3455666655443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.00052 Score=64.71 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=59.6
Q ss_pred eEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCC-CcccccccccccCCCCCccccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGI-PAYLGVLGTKRLPYPSRSFELAHCSRCRID 290 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~-~~~~~~~d~~~lpf~~~sFDlV~~s~~l~h 290 (617)
.+|+|+|+|.|.=+.-|+ +..++.+|-...-+.-.. +.+.+-++ ++.+....++.+. .+.+||+|+|. ++-
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sR-A~~- 142 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISR-AFA- 142 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECS-CSS-
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHH-HHHHHcCCcceeeeccchhhhc-cccccceehhh-hhc-
Confidence 479999999996555444 235777776654332222 23344465 4666666666654 34689999854 322
Q ss_pred cccccceEEEEecccccCCceeeec
Q 007128 291 WLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 291 ~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
+...++.-+...+++||.+++-
T Consensus 143 ---~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 143 ---SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEE
Confidence 2245677778899999999884
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.62 E-value=0.00025 Score=66.62 Aligned_cols=113 Identities=11% Similarity=0.101 Sum_probs=63.9
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc-cc-chhhhhhhcccCCcchhhhhhhhhhhhhhhcC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL-IG-SIHNWCEAYSTYPRTYDLLHAWTVFSDIEKRG 537 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl-~~-~~~~~~e~~~~~p~tfDlvh~~~~~~~~~~~~ 537 (617)
+|||+|||+|+++..++.+|.. .|+.+|. +.+++.+.+.-- .+ .....+.+...++..||+|.++-=|.... ..
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~-~~ 125 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR-KH 125 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS-TT
T ss_pred EEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccc-cc
Confidence 5999999999999888887752 4666664 455555544311 11 11122334455678899998754432111 11
Q ss_pred CCcccchhhccccccCcceEEEec--ChhHHHHHHHhhhhccccc
Q 007128 538 CSGEDLLLEMDRILRPTGFVIIRD--KQSVVDFVKKYLRALNWEA 580 (617)
Q Consensus 538 c~~~~~l~Em~RiLrPgG~~ii~~--~~~~~~~~~~~~~~~~w~~ 580 (617)
.+.. .+.+.+.+++.++..+ .....+.+++++...+|..
T Consensus 126 ~d~~----~l~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i 166 (201)
T d1wy7a1 126 ADRP----FLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVV 166 (201)
T ss_dssp TTHH----HHHHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred ccHH----HHHHHHhhcccchhcccchHHHHHHHHHHHhhcCceE
Confidence 1221 1223445555554443 3345556777777777765
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.47 E-value=0.0012 Score=63.37 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred eEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCC-cccc-cccccccCCCCCcccccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIP-AYLG-VLGTKRLPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~-~~d~~~lpf~~~sFDlV~~s~~l~ 289 (617)
.+|+|+|||.|.++.+++.+ .|.|+++-. +.++.-+. ....+-+ +.+. ..|+.. .+.+..|+|+|..+ .
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~-~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~-e 142 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIP-MSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIG-E 142 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCC-CCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCC-C
T ss_pred CeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCcc-ccccccccccchhhhhHHh--cCCCcCCEEEeeCC-C
Confidence 47999999999999998765 344444421 11111100 0000001 1111 112222 24568999998743 2
Q ss_pred cccccc-------ceEEEEecccccCCceeeecChhh
Q 007128 290 DWLQRD-------GILLLELDRLLRPGGYFAYSSPEA 319 (617)
Q Consensus 290 h~~~~~-------~~~L~el~RvLrPGG~lvis~p~~ 319 (617)
. ..+. -.+|.-+.+.|+|||-|++-.+..
T Consensus 143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 1 1111 135556678899999999876554
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0013 Score=60.40 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=56.4
Q ss_pred eEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCCccccccccccc--------CCCCCccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL--------PYPSRSFELA 282 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l--------pf~~~sFDlV 282 (617)
.+|||+||++|.|+.++.+. .++++|+.+...- ..+.+..+|.... -...+.||+|
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV 92 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeeccccccc-----------CCceEeecccccchhhhhhhhhccCcceeEE
Confidence 68999999999999988764 3788887763210 1122333332211 1234579999
Q ss_pred ccccccccccccc-----------ceEEEEecccccCCceeeecChh
Q 007128 283 HCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 283 ~~s~~l~h~~~~~-----------~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+|..+ ....... ...+.-+.++|++||.|++-.+.
T Consensus 93 lSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 93 MSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred Eeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 87543 2221110 12555678899999999997654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0017 Score=64.04 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=71.5
Q ss_pred eeEEEeecccccccccccccc----hhhhhccCCCccchhhhHHHHHhCCCccccccccccc--CCCCCcccccccc---
Q 007128 215 LRTVLDVGCGVASFGAYLLSS----DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRL--PYPSRSFELAHCS--- 285 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~----~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~l--pf~~~sFDlV~~s--- 285 (617)
+.+|||+.+|.|.=+..|++. .|+++|+++.-+.... +...+.|++......+.... ....+.||.|++-
T Consensus 103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 181 (284)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEeccc
Confidence 478999999999766555543 4888898887665544 34455566544443322211 1234689999752
Q ss_pred -c-cccc--------cccc--------cceEEEEecccccCCceeeecChhhhcCCHHHHHHHHHHHHHHHH
Q 007128 286 -R-CRID--------WLQR--------DGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVER 339 (617)
Q Consensus 286 -~-~l~h--------~~~~--------~~~~L~el~RvLrPGG~lvis~p~~~~~~~~~~~~w~~l~~l~~~ 339 (617)
. ..+. +... ...+|..+.+.|||||+++.++=...+...+ +.++.++++
T Consensus 182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE-----~vv~~~l~~ 248 (284)
T d1sqga2 182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS-----LQIKAFLQR 248 (284)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH-----HHHHHHHHH
T ss_pred cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH-----HHHHHHHHh
Confidence 1 1110 1100 0247888899999999999986554433332 345556654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.0042 Score=60.04 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=46.0
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHhCCCccccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTK 270 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~ 270 (617)
..++.+.+.+.. .. ++.|||||||+|.++..|++. .|+++|+++..+...+..... ..++.+..+|+.
T Consensus 8 ~~~~~Iv~~~~~------~~--~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l 77 (252)
T d1qyra_ 8 FVIDSIVSAINP------QK--GQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHCC------CT--TCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGG
T ss_pred HHHHHHHHhcCC------CC--CCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhh
Confidence 455677777765 33 368999999999999999886 588998887544333221111 123555556655
Q ss_pred ccC
Q 007128 271 RLP 273 (617)
Q Consensus 271 ~lp 273 (617)
.++
T Consensus 78 ~~~ 80 (252)
T d1qyra_ 78 TFN 80 (252)
T ss_dssp GCC
T ss_pred hhc
Confidence 543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=94.48 E-value=0.0012 Score=60.74 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=56.4
Q ss_pred eEEEeecccccccccccccch---hhhhccCCCccchhhhHHHHHhCCC---cccccccc---cccCCCCCccccccccc
Q 007128 216 RTVLDVGCGVASFGAYLLSSD---VITMSLAPNDVHQNQIQFALERGIP---AYLGVLGT---KRLPYPSRSFELAHCSR 286 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~~~---V~gvDis~~dl~~a~~~~a~~rg~~---~~~~~~d~---~~lpf~~~sFDlV~~s~ 286 (617)
.+|||+-||+|.++.+.+.++ |+.+|.+...+...+ +....-+.. ..+...|. .........||+|++.-
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik-~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHh-hHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 589999999999999998874 777887775544333 222222222 22223332 22233445799998642
Q ss_pred cccccccc-cceEEEEe--cccccCCceeeec
Q 007128 287 CRIDWLQR-DGILLLEL--DRLLRPGGYFAYS 315 (617)
Q Consensus 287 ~l~h~~~~-~~~~L~el--~RvLrPGG~lvis 315 (617)
++... ....+..+ ..+|+++|++++.
T Consensus 124 ---PY~~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 124 ---PFHFNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp ---CSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---hHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 12111 12234433 3578999999885
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.46 E-value=0.0029 Score=60.41 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=56.0
Q ss_pred eEEEeeccccccccccccc--------chhhhhccCCCccchhhhHHHHHhCCCcccccccccccC----CCCCcccccc
Q 007128 216 RTVLDVGCGVASFGAYLLS--------SDVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLP----YPSRSFELAH 283 (617)
Q Consensus 216 ~~VLDVGCG~G~~~~~L~~--------~~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~lp----f~~~sFDlV~ 283 (617)
.+|||+|++.|..+..++. ..++++|+.+.....+. ....++.+..+|..... +.+..||+|+
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccceeeeecccccHHHHHHHHhcCCCEEE
Confidence 5899999999976554432 25889998764433222 12234556666643322 2345688887
Q ss_pred ccccccccccccceEEEEecccccCCceeeecChh
Q 007128 284 CSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 284 ~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
.-.. ++. .....-+ ++..+|++||++++.+..
T Consensus 157 ID~~-H~~-~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 157 IDNA-HAN-TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp EESS-CSS-HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred EcCC-cch-HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 5432 222 2211112 356899999999997654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=94.37 E-value=0.0034 Score=65.16 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=71.5
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc-----------------hhhhhccCCCccchhhhHH
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS-----------------DVITMSLAPNDVHQNQIQF 254 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~-----------------~V~gvDis~~dl~~a~~~~ 254 (617)
....+.+.+++.. . ...+|+|-.||+|.|...+.++ .+.|+|+++.....+....
T Consensus 148 ~~Iv~~mv~ll~~------~--~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 148 RPLIQAMVDCINP------Q--MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp HHHHHHHHHHHCC------C--TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred hhhhHhhheeccC------c--ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 3455667777654 2 2368999999999988665432 3567777776555555433
Q ss_pred HHHhCCC---cccccccccccCCCCCcccccccccccc-ccccc---------------cceEEEEecccccCCceeeec
Q 007128 255 ALERGIP---AYLGVLGTKRLPYPSRSFELAHCSRCRI-DWLQR---------------DGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 255 a~~rg~~---~~~~~~d~~~lpf~~~sFDlV~~s~~l~-h~~~~---------------~~~~L~el~RvLrPGG~lvis 315 (617)
.. ++.. ..+...|.... .+...||+|+++--.- .+... ...++..+...|++||++++.
T Consensus 220 ~l-~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 220 YL-HGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp HH-TTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh-cCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 33 2322 22333343322 3456899999863210 00000 012777788999999999998
Q ss_pred Chhhh
Q 007128 316 SPEAY 320 (617)
Q Consensus 316 ~p~~~ 320 (617)
.|...
T Consensus 298 ~p~~~ 302 (425)
T d2okca1 298 LPDNV 302 (425)
T ss_dssp EEHHH
T ss_pred echHH
Confidence 87653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.0014 Score=63.32 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=72.5
Q ss_pred cchhhHHHhhhcchhhHhhhcCC--ceEEEEeecCCC-CCceEEEeec----cc---ccchh-hhhhhc-c---cC-Ccc
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK--DVWVMSVVPEDG-PNTLKLIYDR----GL---IGSIH-NWCEAY-S---TY-PRT 520 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~--~~~v~~v~~~~~-~~~l~~~~~r----gl---~~~~~-~~~e~~-~---~~-p~t 520 (617)
....+|||+|||+|.++..|+.+ +. +++.+|. +.++++|.+. ++ +-.+| ++...+ . .. ..+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~---~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 136 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCc---cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence 45567999999999999999865 33 5667774 5666655443 22 22222 121111 1 11 267
Q ss_pred hhhhhhhhhhhhhh---------------------hcC----------CCcccchhhccccccCcceEEEe-cChhHHHH
Q 007128 521 YDLLHAWTVFSDIE---------------------KRG----------CSGEDLLLEMDRILRPTGFVIIR-DKQSVVDF 568 (617)
Q Consensus 521 fDlvh~~~~~~~~~---------------------~~~----------c~~~~~l~Em~RiLrPgG~~ii~-~~~~~~~~ 568 (617)
||+|.|+-=|-... ... ..+..++.|-.+.++..|++..- ...+-+++
T Consensus 137 fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~ 216 (250)
T d2h00a1 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP 216 (250)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH
T ss_pred eeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHH
Confidence 99987543221000 000 01234566777889999998543 33567778
Q ss_pred HHHhhhhcccccc
Q 007128 569 VKKYLRALNWEAV 581 (617)
Q Consensus 569 ~~~~~~~~~w~~~ 581 (617)
|++++...+...+
T Consensus 217 i~~~L~~~g~~~i 229 (250)
T d2h00a1 217 LKEELRIQGVPKV 229 (250)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCeE
Confidence 8999999888765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.0073 Score=59.11 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=47.7
Q ss_pred hHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-CCCcccccccc
Q 007128 193 KYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGT 269 (617)
Q Consensus 193 ~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~ 269 (617)
..++.+.+.+.. .. ...|||||+|+|.++..|++. .|+++++++..+...+..+.... ..++.+..+|+
T Consensus 8 ~i~~kIv~~~~~------~~--~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~ 79 (278)
T d1zq9a1 8 LIINSIIDKAAL------RP--TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 79 (278)
T ss_dssp HHHHHHHHHTCC------CT--TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred HHHHHHHHHhCC------CC--CCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH
Confidence 445666666654 32 368999999999999999875 58899888765544432222111 12355566666
Q ss_pred cccCCC
Q 007128 270 KRLPYP 275 (617)
Q Consensus 270 ~~lpf~ 275 (617)
...+++
T Consensus 80 l~~~~~ 85 (278)
T d1zq9a1 80 LKTDLP 85 (278)
T ss_dssp TTSCCC
T ss_pred hhhhhh
Confidence 655544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.17 E-value=0.0022 Score=61.11 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=56.5
Q ss_pred CccchhhHHHhhhcchhhHhhhcC---CceEEEEeecCCCCCceEEEe----eccc-------ccchhhhhhhcc---cC
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKE---KDVWVMSVVPEDGPNTLKLIY----DRGL-------IGSIHNWCEAYS---TY 517 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~---~~~~v~~v~~~~~~~~l~~~~----~rgl-------~~~~~~~~e~~~---~~ 517 (617)
...+.++||.+|+++|--+.+|++ .+..+..+.... +..+.|. .-|+ .|...+.-..+. ..
T Consensus 56 ~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 56 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp HHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred HhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcccc
Confidence 345677899999999988888873 355555554433 2222222 2243 222222222221 12
Q ss_pred CcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 518 PRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 518 p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+++||+|..+.-=. .....+....+.|||||.+|+.+-
T Consensus 134 ~~~fD~iFiDa~k~-------~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 134 HGSYDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp TTCBSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEETT
T ss_pred CCceeEEEeccchh-------hhHHHHHHHHhhcCCCcEEEEccC
Confidence 36899997532111 233455556689999999999766
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=94.13 E-value=0.0042 Score=59.61 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=49.4
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCC----C--CCceEEEeecccccchhhhhhhcccC-Ccchhhhhhhhhhhh-
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPED----G--PNTLKLIYDRGLIGSIHNWCEAYSTY-PRTYDLLHAWTVFSD- 532 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~----~--~~~l~~~~~rgl~~~~~~~~e~~~~~-p~tfDlvh~~~~~~~- 532 (617)
+|+|+|||.||++-+++++. -|+.|.+.+ . ..+....+.-+++..-. -.++-.. |...|+|.|+..=+.
T Consensus 69 ~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~--~~dv~~l~~~~~D~vlcDm~ess~ 145 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS--GVDVFFIPPERCDTLLCDIGESSP 145 (257)
T ss_dssp EEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC--SCCTTTSCCCCCSEEEECCCCCCS
T ss_pred eEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchh--hhhHHhcCCCcCCEEEeeCCCCCC
Confidence 48999999999999998763 122333333 2 11111111112211100 0112222 377888888643210
Q ss_pred ---hhhcCCCcccchhhccccccCcceEEEecC
Q 007128 533 ---IEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 533 ---~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
++..| ...+|.=+.++|+|||.|++.--
T Consensus 146 ~~~vd~~R--tl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 146 NPTVEAGR--TLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp SHHHHHHH--HHHHHHHHHHHCCTTCEEEEEES
T ss_pred Cchhhhhh--HHHHHHHHHHHcccCCEEEEEEC
Confidence 00000 01344445688999999998743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=93.92 E-value=0.0031 Score=60.50 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=56.8
Q ss_pred eeEEEeecccccccccccc----cchhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCC---CCCccccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLL----SSDVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPY---PSRSFELAHCSR 286 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~----~~~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf---~~~sFDlV~~s~ 286 (617)
..+++|||+|.|.=+.-|+ +..++-+|-+..-..--+ ....+-+++ +.+....++.+.. ..++||+|+|-
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~-~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR- 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE-KLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR- 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE-
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHH-HHHHHhCCCCcEEEeehhhhccccccccccceEEEEh-
Confidence 4689999999996554443 335666665543221111 223344553 4444444554432 13589999864
Q ss_pred cccccccccceEEEEecccccCCceeeec
Q 007128 287 CRIDWLQRDGILLLELDRLLRPGGYFAYS 315 (617)
Q Consensus 287 ~l~h~~~~~~~~L~el~RvLrPGG~lvis 315 (617)
++ .+...++.-....+++||.+++-
T Consensus 149 Av----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AV----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CC----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh----hCHHHHHHHHhhhcccCCEEEEE
Confidence 32 22345777788999999999884
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.46 E-value=0.0044 Score=57.46 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.0
Q ss_pred hhHHHhhhcchhhHhhhcCC
Q 007128 460 RNLMDMKAHLGSFAAALKEK 479 (617)
Q Consensus 460 r~vLD~g~G~G~fa~~L~~~ 479 (617)
.+|||.+||+|+|..++.++
T Consensus 21 ~~IlDp~~G~G~fl~~~~~~ 40 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFREA 40 (223)
T ss_dssp CEEEEETCTTCHHHHHHHHH
T ss_pred CEEEECCCchHHHHHHHHHh
Confidence 47999999999999888753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.0014 Score=65.61 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=58.8
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------cc-----ccch-hhhhhhcccCCcch
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------GL-----IGSI-HNWCEAYSTYPRTY 521 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------gl-----~~~~-~~~~e~~~~~p~tf 521 (617)
..+.++||.+|.|.|+.+..+.+. ++ .+|+.++. +..++++.+. +. +-.+ .|..+-+...++.|
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCc--ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 345678999999999999988775 33 24444443 4444444322 10 0111 12222223345889
Q ss_pred hhhhhhhhhhhhhhc-CCCc--ccchhhccccccCcceEEEec
Q 007128 522 DLLHAWTVFSDIEKR-GCSG--EDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 522 Dlvh~~~~~~~~~~~-~c~~--~~~l~Em~RiLrPgG~~ii~~ 561 (617)
|+|..+..-+..... ...+ .+.+..+.|.|+|||.++..-
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 999854321100000 0001 357788999999999998743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.005 Score=65.63 Aligned_cols=120 Identities=19% Similarity=0.141 Sum_probs=68.2
Q ss_pred hhHHHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc----------------------hhhhhccCCCccch
Q 007128 192 DKYIASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS----------------------DVITMSLAPNDVHQ 249 (617)
Q Consensus 192 ~~Y~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~----------------------~V~gvDis~~dl~~ 249 (617)
....+.+.+++.. .. +.+|+|-.||+|.|.....+. .+.|+|+.+.....
T Consensus 150 ~~Iv~~mv~ll~~------~~--~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 150 RPLIKTIIHLLKP------QP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp HHHHHHHHHHHCC------CT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cchhHhhhhcccC------cc--chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 3455677777754 32 368999999999987654331 24566666654444
Q ss_pred hhhHHHHHhCCCcccccccccccC-------CCCCcccccccccccc-ccccc------------cceEEEEecccccCC
Q 007128 250 NQIQFALERGIPAYLGVLGTKRLP-------YPSRSFELAHCSRCRI-DWLQR------------DGILLLELDRLLRPG 309 (617)
Q Consensus 250 a~~~~a~~rg~~~~~~~~d~~~lp-------f~~~sFDlV~~s~~l~-h~~~~------------~~~~L~el~RvLrPG 309 (617)
+...... ++....+...+....+ .....||+|+++--+- .+..+ .-.++..+.+.|+||
T Consensus 222 a~~nl~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 222 ALMNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 4433222 2333222222221111 1335799999863210 00000 012778889999999
Q ss_pred ceeeecChhhh
Q 007128 310 GYFAYSSPEAY 320 (617)
Q Consensus 310 G~lvis~p~~~ 320 (617)
|++++..|...
T Consensus 301 Gr~aiIlP~~~ 311 (524)
T d2ar0a1 301 GRAAVVVPDNV 311 (524)
T ss_dssp EEEEEEEEHHH
T ss_pred CcEEEEEehHH
Confidence 99999887653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=93.15 E-value=0.0053 Score=61.07 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=72.2
Q ss_pred hhhHHHhhhcchhhHhhhcC----CceEEEEeecCCC-CCceEEEeecc----c-ccchhhhhhhcccCC-cchhhhhhh
Q 007128 459 LRNLMDMKAHLGSFAAALKE----KDVWVMSVVPEDG-PNTLKLIYDRG----L-IGSIHNWCEAYSTYP-RTYDLLHAW 527 (617)
Q Consensus 459 ~r~vLD~g~G~G~fa~~L~~----~~~~v~~v~~~~~-~~~l~~~~~rg----l-~~~~~~~~e~~~~~p-~tfDlvh~~ 527 (617)
-.+|||.+||+|+|..++.+ +...-.++..+|. +.++.+|...- . ....+. ..+...+ ..||+|.++
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ--DGLANLLVDPVDVVISD 195 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES--CTTSCCCCCCEEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcc--ccccccccccccccccC
Confidence 34699999999999988753 2222235555553 34444333221 1 111110 1112223 789999875
Q ss_pred hhhhhh-----hhc-----CCC---cc-cchhhccccccCcceEEEecChhH-----HHHHHHhhhhcccccccccccCC
Q 007128 528 TVFSDI-----EKR-----GCS---GE-DLLLEMDRILRPTGFVIIRDKQSV-----VDFVKKYLRALNWEAVATTADAS 588 (617)
Q Consensus 528 ~~~~~~-----~~~-----~c~---~~-~~l~Em~RiLrPgG~~ii~~~~~~-----~~~~~~~~~~~~w~~~~~~~~~~ 588 (617)
-=|... ... ... .. ..+..+-+.|+|||.+++=-+... -..+++.+-.-++-. .+++=.
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~--~ii~lp 273 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIE--GIIKLP 273 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEE--EEEECC
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEE--EEEECC
Confidence 433210 000 000 01 136668899999998766555442 345666444433221 222200
Q ss_pred CC--CCCCCCeEEEEEEec
Q 007128 589 SD--SDKDGDEVVFIVQKK 605 (617)
Q Consensus 589 ~~--~~~~~~~~~l~~~K~ 605 (617)
.+ .....+--||+.+|+
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 11 123455678999885
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.09 E-value=0.0054 Score=56.59 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=37.7
Q ss_pred cchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecChh
Q 007128 519 RTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQS 564 (617)
Q Consensus 519 ~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~ 564 (617)
+.||+|.|-.||.++... ....++..+.+.|+|||++++-....
T Consensus 131 ~~fDvI~CRNVLiYf~~~--~~~~vl~~l~~~L~pGG~L~lG~sE~ 174 (193)
T d1af7a2 131 GPFDAIFCRNVMIYFDKT--TQEDILRRFVPLLKPDGLLFAGHSEN 174 (193)
T ss_dssp CCEEEEEECSSGGGSCHH--HHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred CCccEEEeehhHHhcCHH--HHHHHHHHHHHHhCCCcEEEEecCcc
Confidence 789999999999988633 34689999999999999999988753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.0021 Score=59.01 Aligned_cols=92 Identities=7% Similarity=0.021 Sum_probs=52.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEee---c-cc------ccchhhhhhhcccCCcchhhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYD---R-GL------IGSIHNWCEAYSTYPRTYDLLHAWTV 529 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~---r-gl------~~~~~~~~e~~~~~p~tfDlvh~~~~ 529 (617)
+|||+.||+|.++...+.+|+. .|+-+|. +..++.+.+ + +. .+....| +......||+|.++==
T Consensus 46 ~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~---l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIVFVDPP 120 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEEEECCS
T ss_pred hhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeeccccc---ccccccccCEEEEcCc
Confidence 5999999999999988888874 3555553 333332222 1 11 1122222 1222378999987422
Q ss_pred hhhhhhcCCCcccchhhc--cccccCcceEEEecC
Q 007128 530 FSDIEKRGCSGEDLLLEM--DRILRPTGFVIIRDK 562 (617)
Q Consensus 530 ~~~~~~~~c~~~~~l~Em--~RiLrPgG~~ii~~~ 562 (617)
+. ....+.++.-+ ..+|+|+|.+|+-..
T Consensus 121 Y~-----~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 121 FR-----RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp SS-----TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cc-----cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 21 01222333322 357999999998544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.67 E-value=0.0079 Score=58.75 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=56.9
Q ss_pred ccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEeec-----c---------------cccchhhhhhhcc
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIYDR-----G---------------LIGSIHNWCEAYS 515 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~~r-----g---------------l~~~~~~~~e~~~ 515 (617)
..+-++||-+|+|.|+.+..+.+.+..-+.++-+| +..++++.+- + .++..-.|-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~--- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCC-HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh---
Confidence 35667899999999999999887765322233333 3444443210 0 0121111211
Q ss_pred cCCcchhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEec
Q 007128 516 TYPRTYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 516 ~~p~tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+ .++||+|..+..-+.-....---...+..+.|.|+|||.++..-
T Consensus 146 ~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 1 37899997543222100000011357889999999999998843
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=92.39 E-value=0.0035 Score=57.64 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHhHhcCCCCCCCCCCceeEEEeecccccccccccccc--hhhhhccCCCccchhhhHHHHHh-CCCcccccccccc
Q 007128 195 IASIANMLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLSS--DVITMSLAPNDVHQNQIQFALER-GIPAYLGVLGTKR 271 (617)
Q Consensus 195 ~~~l~~lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~~--~V~gvDis~~dl~~a~~~~a~~r-g~~~~~~~~d~~~ 271 (617)
.+.+.+.|.. ..+ ..++|..+|.|..+..+++. .|+|+|..+.++..+. +. .-.+.+...+...
T Consensus 7 l~Evl~~l~~------~~g--~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~-----~~~~~~~~~~~~~f~~ 73 (182)
T d1wg8a2 7 YQEALDLLAV------RPG--GVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK-----GLHLPGLTVVQGNFRH 73 (182)
T ss_dssp HHHHHHHHTC------CTT--CEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HTCCTTEEEEESCGGG
T ss_pred HHHHHHhcCC------CCC--CEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHh-----hccccceeEeehHHHH
Confidence 3455555544 333 68999999999999998876 5899998886654433 22 1123333333222
Q ss_pred c-----CCCCCccccccccccc--cccccc------cceEEEEecccccCCceeeecChh
Q 007128 272 L-----PYPSRSFELAHCSRCR--IDWLQR------DGILLLELDRLLRPGGYFAYSSPE 318 (617)
Q Consensus 272 l-----pf~~~sFDlV~~s~~l--~h~~~~------~~~~L~el~RvLrPGG~lvis~p~ 318 (617)
+ .+..+.+|.|+....+ .|..+. ....|.....+|+|||.+++..+.
T Consensus 74 ~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 74 LKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 2 1334578888754322 111111 122567778899999999987653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=92.26 E-value=0.002 Score=59.15 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=52.0
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeec----cc---c----cchhhhhhhcccCCcchhhhhhhh
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDR----GL---I----GSIHNWCEAYSTYPRTYDLLHAWT 528 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~r----gl---~----~~~~~~~e~~~~~p~tfDlvh~~~ 528 (617)
+|||+.||+|+++...+.+|+. .|+.+|. +..++.+.+. +. + +.+..+-+.+..-...||+|.++=
T Consensus 44 ~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP 121 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 121 (182)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEech
Confidence 6999999999999999988873 3555553 3444333222 22 1 111111111111125799987632
Q ss_pred hhhhhhhcCCCcccchhhc--cccccCcceEEEecC
Q 007128 529 VFSDIEKRGCSGEDLLLEM--DRILRPTGFVIIRDK 562 (617)
Q Consensus 529 ~~~~~~~~~c~~~~~l~Em--~RiLrPgG~~ii~~~ 562 (617)
=|. .-+.+.+|..+ ..+|+|+|.+|+-.+
T Consensus 122 PY~-----~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 122 PYA-----KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp CGG-----GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhh-----hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 111 00223344443 258999999988544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.012 Score=57.88 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred eeEEEeecccccccccccccc-----hhhhhccCCCccchhhhHHHHHhCCC-cccccccccccCCCC---Cccccccc
Q 007128 215 LRTVLDVGCGVASFGAYLLSS-----DVITMSLAPNDVHQNQIQFALERGIP-AYLGVLGTKRLPYPS---RSFELAHC 284 (617)
Q Consensus 215 ~~~VLDVGCG~G~~~~~L~~~-----~V~gvDis~~dl~~a~~~~a~~rg~~-~~~~~~d~~~lpf~~---~sFDlV~~ 284 (617)
+.+|||+.||.|.-+.+|++. .|+++|+++.-+...+ +...+.|+. +.+...|...++..+ +.||.|++
T Consensus 95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 368999999999877777643 3788888775554443 334444554 555555665554322 56999975
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=90.84 E-value=0.015 Score=57.31 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=58.2
Q ss_pred cchhhHHHhhhcchhhHhhhcCCc-eEEEEeecCCCCCceEEEeecc------c----ccchh-hhhhhcccCCcchhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEKD-VWVMSVVPEDGPNTLKLIYDRG------L----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~~-~~v~~v~~~~~~~~l~~~~~rg------l----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
.+-++||=+|.|.|+.+..+.+.. +.-..++-+| +..++++.+-- + +-.++ |..+-+...++.||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEID-p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVD-GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCC-HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 457889999999999999998863 4222233333 34444332210 0 00001 1111133345889999
Q ss_pred hhhhhhhhhhhcCCC--cccchhhccccccCcceEEEecC
Q 007128 525 HAWTVFSDIEKRGCS--GEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 525 h~~~~~~~~~~~~c~--~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.++..-+... ..+. -...+..+.|.|+|||.++....
T Consensus 167 i~D~~dp~~~-~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 167 IIDSTDPTAG-QGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCcC-chhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 8754433111 1111 24688899999999999998554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.13 E-value=0.028 Score=55.61 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=57.0
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCC-CCceEEEeec------cc--------ccchhhhhhhcccCCc
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDG-PNTLKLIYDR------GL--------IGSIHNWCEAYSTYPR 519 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~-~~~l~~~~~r------gl--------~~~~~~~~e~~~~~p~ 519 (617)
....++||-+|.|.|+.+..+.+. ++. .|+.++. +..++.+.+= ++ ++..-.+ +...++
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~---l~~~~~ 178 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---LKNHKN 178 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---HHHCTT
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH---HHhCCC
Confidence 346778999999999999999885 442 3444443 3343333221 00 1111111 222358
Q ss_pred chhhhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 520 TYDLLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 520 tfDlvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
.||+|..+..-+.-....---...+..+.|+|+|||.++....
T Consensus 179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 8999986543321110111113678899999999999999753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.038 Score=53.94 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=58.3
Q ss_pred CccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEEEeecc------c----ccchh-hhhhhcccCCcchh
Q 007128 455 QSNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKLIYDRG------L----IGSIH-NWCEAYSTYPRTYD 522 (617)
Q Consensus 455 ~~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~~~~rg------l----~~~~~-~~~e~~~~~p~tfD 522 (617)
....-++||-+|.|.|+.+..+.+. ++.-+.++-+| +..++++.+-- + +-.++ |-.+-+..-+++||
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD-~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEID-EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCC-HHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3456678999999999999999986 44333333333 33433332210 0 01111 11111223458899
Q ss_pred hhhhhhhhhhhhhc-CCCcccchhhccccccCcceEEEec
Q 007128 523 LLHAWTVFSDIEKR-GCSGEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 523 lvh~~~~~~~~~~~-~c~~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
+|..+..-+ .... .---...+..+.|.|+|||.+++.-
T Consensus 154 vIi~D~~~p-~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITDSSDP-MGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCCC-CCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 998653222 1100 0001356888999999999999864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.77 E-value=0.011 Score=60.12 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=71.5
Q ss_pred ccccCchhhHHHHHHh-HhcCCCCCCCCCCceeEEEeeccccccccccccc-c---hhhhhccCCCccchhhhHHHHHhC
Q 007128 185 THFHYGADKYIASIAN-MLNFSNDNINNEGRLRTVLDVGCGVASFGAYLLS-S---DVITMSLAPNDVHQNQIQFALERG 259 (617)
Q Consensus 185 ~~F~~~a~~Y~~~l~~-lL~~~~~~l~~~~~~~~VLDVGCG~G~~~~~L~~-~---~V~gvDis~~dl~~a~~~~a~~rg 259 (617)
..|.+.+..+.+.+.- ++.. . +..+|||..||+|..+...+. . .|++.|+++..+..++ +.+..++
T Consensus 23 ~vFYNp~q~~NRDlsvl~~~~------~--~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~ 93 (375)
T d2dula1 23 PVFYNPRMALNRDIVVVLLNI------L--NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNF 93 (375)
T ss_dssp CCCCCGGGHHHHHHHHHHHHH------H--CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHC
T ss_pred CcccCHHHhhhhHHHHHHHHH------h--CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcC
Confidence 3677777777665422 2211 1 125899999999988875433 2 5788899887766665 3333333
Q ss_pred CCc----------------ccccccccccCC-CCCccccccccccccccccccceEEEEecccccCCceeeecC
Q 007128 260 IPA----------------YLGVLGTKRLPY-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 260 ~~~----------------~~~~~d~~~lpf-~~~sFDlV~~s~~l~h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
+.. .+...|+..+.. ....||+|..- ++- .+..+|..+.+.++.||+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiD----PfG-s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 94 DGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp CSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEeehhhhhhhhHhhcCcCCcccCC----CCC-CcHHHHHHHHHHhccCCEEEEEe
Confidence 321 122223222221 23569998743 222 22458888999999999999973
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.23 E-value=0.013 Score=57.64 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=58.5
Q ss_pred ccchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEEEeecc------c----cc-chhhhhhhcccCC-cchh
Q 007128 456 SNSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKLIYDRG------L----IG-SIHNWCEAYSTYP-RTYD 522 (617)
Q Consensus 456 ~~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~~~~rg------l----~~-~~~~~~e~~~~~p-~tfD 522 (617)
..+.++||=+|-|.|+.+..+.+. ++..+.++-+| +..++++.+-- + +- .+.|-.+-+...+ ++||
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD-~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEID-KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESC-HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCC-HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 356788999999999999999886 54322333333 33333332210 0 00 0111112222344 6899
Q ss_pred hhhhhhhhhhhhhcCCCcccchhhccccccCcceEEEecC
Q 007128 523 LLHAWTVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDK 562 (617)
Q Consensus 523 lvh~~~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~ 562 (617)
+|..+..-+.-.....--...+..+.|+|+|||.+++.-.
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 9874322110000000013578899999999999999654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=87.24 E-value=0.087 Score=52.42 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=70.1
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCCCCceEEEe----eccc--ccchhhhh-hhcccC---Ccchhhhhhh
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDGPNTLKLIY----DRGL--IGSIHNWC-EAYSTY---PRTYDLLHAW 527 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~~~~l~~~~----~rgl--~~~~~~~~-e~~~~~---p~tfDlvh~~ 527 (617)
.-..|||+-||.|+|+..|+++...|..|... +..++.|. ..|+ +-.++.-. +.+... ...||+|..
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~--~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil- 288 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGV--PALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL- 288 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE-
T ss_pred CCceEEEecccccccchhccccccEEEeccCc--HHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe-
Confidence 34469999999999999999987654444332 22222221 1122 11111111 112212 266888763
Q ss_pred hhhhhhhhcCCCcccchhhccccccCcceEEEecChhHH-HHHHHhhhhccccc--ccccccCCCCCCCCCCeEEEEEE
Q 007128 528 TVFSDIEKRGCSGEDLLLEMDRILRPTGFVIIRDKQSVV-DFVKKYLRALNWEA--VATTADASSDSDKDGDEVVFIVQ 603 (617)
Q Consensus 528 ~~~~~~~~~~c~~~~~l~Em~RiLrPgG~~ii~~~~~~~-~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~l~~~ 603 (617)
..+|.....++.++-+ ++|.=.++|+=.+..+ ..++.+++ -+|+. + +.+| .=|.+..=|-|.+-+
T Consensus 289 ------DPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~~i-~~~D--~FP~T~HvE~v~~l~ 356 (358)
T d1uwva2 289 ------DPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIARL-AMLD--MFPHTGHLESMVLFS 356 (358)
T ss_dssp ------CCCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEEEE-EEEC--CSTTSSCCEEEEEEE
T ss_pred ------CCCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeEE-EEEe--cCCCCccEEEEEEEE
Confidence 2355555566666655 4788899997555544 44665543 35554 3 3444 333333345554433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.61 E-value=0.044 Score=48.65 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=53.2
Q ss_pred eeEEEeeccc-ccccccccccc---hhhhhccCCCccchhhhHHHHHhCCCcccccccccc-cCCCCCcccccccccccc
Q 007128 215 LRTVLDVGCG-VASFGAYLLSS---DVITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKR-LPYPSRSFELAHCSRCRI 289 (617)
Q Consensus 215 ~~~VLDVGCG-~G~~~~~L~~~---~V~gvDis~~dl~~a~~~~a~~rg~~~~~~~~d~~~-lpf~~~sFDlV~~s~~l~ 289 (617)
+.+||-+|+| .|.++..+++. +|+++|.++. +.+.+++.|.+..+...+... ..-..+.||+|+..-...
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 4789999998 66666666653 4666666553 456666766543222111111 111235689876432111
Q ss_pred ccccccceEEEEecccccCCceeeecC
Q 007128 290 DWLQRDGILLLELDRLLRPGGYFAYSS 316 (617)
Q Consensus 290 h~~~~~~~~L~el~RvLrPGG~lvis~ 316 (617)
. ...+....++|+|||++++..
T Consensus 103 ---~--~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 103 ---T--DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ---T--TCCTTTGGGGEEEEEEEEECC
T ss_pred ---c--cchHHHHHHHhhccceEEEec
Confidence 1 123566789999999999864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=86.28 E-value=0.03 Score=51.09 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred cCccchhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeeccc--ccchhhhhhhc----ccCC-cchhhhh
Q 007128 454 IQSNSLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRGL--IGSIHNWCEAY----STYP-RTYDLLH 525 (617)
Q Consensus 454 i~~~~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rgl--~~~~~~~~e~~----~~~p-~tfDlvh 525 (617)
+..+. .++|..+|.||-+.+|.+++. .|.++|. +.++..+.++-. +..+|.....+ ..+. ..+|.|.
T Consensus 16 ~~~g~--~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl 90 (182)
T d1wg8a2 16 VRPGG--VYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGIL 90 (182)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCC--EEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence 34444 499999999999999999876 5667774 455544433211 34444433332 2333 5677765
Q ss_pred hhhhhhhhhhcC-----CCcccchhhccccccCcceEEEecChhHHH-HHHHhhhhcccccc
Q 007128 526 AWTVFSDIEKRG-----CSGEDLLLEMDRILRPTGFVIIRDKQSVVD-FVKKYLRALNWEAV 581 (617)
Q Consensus 526 ~~~~~~~~~~~~-----c~~~~~l~Em~RiLrPgG~~ii~~~~~~~~-~~~~~~~~~~w~~~ 581 (617)
.+.-.+..+-+. ......|.....+|+|||.+++-...+.-+ .++.+++.-.++.+
T Consensus 91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVL 152 (182)
T ss_dssp EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEES
T ss_pred EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceec
Confidence 433222111000 012234555578999999998887776543 47777777666664
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=85.57 E-value=0.064 Score=51.99 Aligned_cols=102 Identities=9% Similarity=0.122 Sum_probs=57.1
Q ss_pred cchhhHHHhhhcchhhHhhhcCC-ceEEEEeecCCCCCceEEEeec-----cc-----ccchh-hhhhhcccCCcchhhh
Q 007128 457 NSLRNLMDMKAHLGSFAAALKEK-DVWVMSVVPEDGPNTLKLIYDR-----GL-----IGSIH-NWCEAYSTYPRTYDLL 524 (617)
Q Consensus 457 ~~~r~vLD~g~G~G~fa~~L~~~-~~~v~~v~~~~~~~~l~~~~~r-----gl-----~~~~~-~~~e~~~~~p~tfDlv 524 (617)
..-++||-+|.|.|+.+..+.+. ++.-..++-+| +..++++.+- |. +-.+. |-.+-+...++.||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID-~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCC-HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 45678999999999999999875 44322333333 3333333211 00 00011 1111122345889999
Q ss_pred hhhhhhhhhhhcCCC--cccchhhccccccCcceEEEec
Q 007128 525 HAWTVFSDIEKRGCS--GEDLLLEMDRILRPTGFVIIRD 561 (617)
Q Consensus 525 h~~~~~~~~~~~~c~--~~~~l~Em~RiLrPgG~~ii~~ 561 (617)
..+..-+ .. .... -......+.|.|+|||.++..-
T Consensus 153 i~D~~~p-~~-~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEP-VG-PAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSC-CS-CCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCC-CC-cchhhccHHHHHHHHhhcCCCceEEEec
Confidence 8654322 11 0001 1356778999999999999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=82.57 E-value=0.45 Score=43.95 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=43.4
Q ss_pred ccchhhccccccCcceEEEecChhHHHHHHHhhhhccccccc---ccccC----CCCCCCCCCeEEEEEEecc
Q 007128 541 EDLLLEMDRILRPTGFVIIRDKQSVVDFVKKYLRALNWEAVA---TTADA----SSDSDKDGDEVVFIVQKKI 606 (617)
Q Consensus 541 ~~~l~Em~RiLrPgG~~ii~~~~~~~~~~~~~~~~~~w~~~~---~~~~~----~~~~~~~~~~~~l~~~K~~ 606 (617)
...+.|+.|+|+|||.+++-........+..++...+|.... +.... .........|.+++..|.-
T Consensus 54 ~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~k~~ 126 (256)
T d1g60a_ 54 YRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSK 126 (256)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESST
T ss_pred HHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEeeecccccccccccccceeeeeccccCc
Confidence 468899999999999998877777666777777766666421 22110 0111234568889988853
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=82.38 E-value=0.034 Score=53.11 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=32.3
Q ss_pred chhhHHHhhhcchhhHhhhcCCceEEEEeecCCC-CCceEEEeecc
Q 007128 458 SLRNLMDMKAHLGSFAAALKEKDVWVMSVVPEDG-PNTLKLIYDRG 502 (617)
Q Consensus 458 ~~r~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~-~~~l~~~~~rg 502 (617)
.-.+||++|||+|.++..|++++. .|+.++. +++++.+.++.
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~ 71 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKL 71 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTT
T ss_pred CCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhh
Confidence 345699999999999999999876 5666664 57777666663
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=81.43 E-value=0.038 Score=50.14 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=23.8
Q ss_pred hHHHhhhcchhhHhhhcCCceEEEEeecCCC
Q 007128 461 NLMDMKAHLGSFAAALKEKDVWVMSVVPEDG 491 (617)
Q Consensus 461 ~vLD~g~G~G~fa~~L~~~~~~v~~v~~~~~ 491 (617)
+|||+-||+|.++..-+++|+. .|+-+|.
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~--~v~fVE~ 74 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAK--KVTFLEL 74 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEECS
T ss_pred eEeecccCccceeeeeeeecce--eeEEeec
Confidence 5999999999999999999884 4555553
|