Citrus Sinensis ID: 007132
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| 224114784 | 631 | predicted protein [Populus trichocarpa] | 0.990 | 0.968 | 0.591 | 0.0 | |
| 56405352 | 571 | RecName: Full=Peptide-N4-(N-acetyl-beta- | 0.894 | 0.966 | 0.623 | 0.0 | |
| 255567074 | 624 | Peptide-N4-(N-acetyl-beta-glucosaminyl)a | 0.954 | 0.943 | 0.604 | 0.0 | |
| 225461673 | 612 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.938 | 0.946 | 0.580 | 0.0 | |
| 449456711 | 624 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.938 | 0.927 | 0.564 | 0.0 | |
| 356514559 | 604 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.909 | 0.928 | 0.579 | 0.0 | |
| 449516754 | 622 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.938 | 0.930 | 0.560 | 0.0 | |
| 15232438 | 609 | Peptide-N4-(N-acetyl-beta-glucosaminyl)a | 0.893 | 0.904 | 0.574 | 0.0 | |
| 297830040 | 611 | hypothetical protein ARALYDRAFT_897760 [ | 0.891 | 0.900 | 0.575 | 0.0 | |
| 312281565 | 611 | unnamed protein product [Thellungiella h | 0.951 | 0.960 | 0.552 | 0.0 |
| >gi|224114784|ref|XP_002316856.1| predicted protein [Populus trichocarpa] gi|222859921|gb|EEE97468.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/631 (59%), Positives = 454/631 (71%), Gaps = 20/631 (3%)
Query: 1 MAFSRFPLLQSVFLLLQLLSTDANLHKTK-LLPPTLFSQLSATTH-------LNETQPTR 52
MA S F L LL LS+ AN+HKT LL LF++ ++ T LN+T PT
Sbjct: 1 MAASLFHLPFLFVFLLHPLSSTANIHKTNNLLKSHLFTEPTSITKTHPAHKPLNDTPPTV 60
Query: 53 YFEVTKPIRLPKTKPCSYPILSHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATC 112
+FEVTKPI +P TKPC + IL HDF TYG+PPVL NYTPPSHC + SKIVL+++ATC
Sbjct: 61 FFEVTKPIDVPNTKPCKHFILQHDFASTYGKPPVLVNYTPPSHCPSQDFSKIVLEWKATC 120
Query: 113 KGTQFDRIFGIWLGGVELLRSCTAEPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGN 172
KG QFDRIFG+WLGGVELLRSCTAEP TGIVW+V KDITRY+SLLVKN+TQ AVY+GN
Sbjct: 121 KGRQFDRIFGVWLGGVELLRSCTAEPRATGIVWTVRKDITRYYSLLVKNETQEFAVYMGN 180
Query: 173 IVDSTYTGVYHVNITIHFYPAEGNLNDRKHDLDSLASRFYSNADLILPISRNLPMNDGLW 232
IVDSTYTG+YHVN++I+FYPAE L+ H ++LAS S ADLILPISRN P+NDG W
Sbjct: 181 IVDSTYTGIYHVNVSIYFYPAEKKLSHSDHGFNNLASGRDSKADLILPISRNFPLNDGFW 240
Query: 233 FEIKNSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGP 292
FEI+NS D++ KEF+ P+NVYRAVLEVY+SFHE DEFWY N PNE+ N+L NGP
Sbjct: 241 FEIQNSTDSEAKEFKIPQNVYRAVLEVYVSFHENDEFWYGNYPNEYIIANNLTGFPGNGP 300
Query: 293 FREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDG 352
FREVVVSLDGE+VGA+WPF+V++TGGI+PL W PIT IGSFDLPSYDIEITPFLGNILDG
Sbjct: 301 FREVVVSLDGEIVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGNILDG 360
Query: 353 EIHKFGFSVTNALNVWLIDANLHLWLDSRSTKTEGKVLKKNVMPLRVSLHADFEGLDGTF 412
+ HK GFSVTNALNVW IDANLHLWLD RST TEGK+LK PL +SL ++F GL+G F
Sbjct: 361 KTHKLGFSVTNALNVWYIDANLHLWLDHRSTITEGKLLKHESKPLALSLVSNFTGLNGKF 420
Query: 413 LTNVSRSISATGQIRSSYGEITTSWIQNFSYSNSMLISKNENLQIIDQMIHFHDTYS--- 469
LT+ R IS+ G ++SS+G ITT + Q+F Y N M + K+ +LQI++Q I F D S
Sbjct: 421 LTSARRFISSNGWVKSSHGNITTRFNQHFGYRNLMEMGKDGDLQIVNQTIKFTDNVSFRK 480
Query: 470 -------QSSHKVYPLRLSIDVLDKGNRSFLQLTNVTLGYYEEKSRSSAGFDFFFSSLKN 522
S K + + D +D+GN + L + NVTLG + EK+ AG F + L+N
Sbjct: 481 PSSNVKAFKSLKNFEFDMYSDYMDQGNGTSLSVANVTLG-FNEKNVKHAGLGFASNILRN 539
Query: 523 LQNGQVVLTIVNNFIVDARWSTQQVYKYHGSDLCYFRNISSSNDIIAYDKVGNACNGERT 582
LQNGQ V+ + NN + STQQ Y Y+GS CYFRNISSSN I D VGN C+ ER
Sbjct: 540 LQNGQGVMVVKNNLVQSGMGSTQQEYTYNGSGFCYFRNISSSNYTILDDNVGNTCS-ERN 598
Query: 583 DSRLGYEIRRWLPSTARKDPLASDELKEKHE 613
S LG+ + RW AR+ LAS+ L + H+
Sbjct: 599 HSHLGFGLGRWWQFPARRASLASELLNKYHD 629
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56405352|sp|P81898.2|PNAA_PRUDU RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A; Short=PNGase A; AltName: Full=Glycopeptide N-glycosidase; AltName: Full=N-glycanase; Contains: RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain; AltName: Full=PNGase A small chain; AltName: Full=PNGase A subunit B; Contains: RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain; AltName: Full=PNGase A large chain; Short=PNGase A subunit A | Back alignment and taxonomy information |
|---|
| >gi|255567074|ref|XP_002524519.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A, putative [Ricinus communis] gi|223536193|gb|EEF37846.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225461673|ref|XP_002285454.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449456711|ref|XP_004146092.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356514559|ref|XP_003525973.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449516754|ref|XP_004165411.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15232438|ref|NP_188110.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana] gi|8777475|dbj|BAA97055.1| unnamed protein product [Arabidopsis thaliana] gi|332642067|gb|AEE75588.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297830040|ref|XP_002882902.1| hypothetical protein ARALYDRAFT_897760 [Arabidopsis lyrata subsp. lyrata] gi|297328742|gb|EFH59161.1| hypothetical protein ARALYDRAFT_897760 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|312281565|dbj|BAJ33648.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| TAIR|locus:2086285 | 609 | AT3G14920 "AT3G14920" [Arabido | 0.886 | 0.898 | 0.580 | 1.6e-173 | |
| TAIR|locus:2169662 | 608 | AT5G05480 "AT5G05480" [Arabido | 0.865 | 0.878 | 0.373 | 8.7e-95 | |
| UNIPROTKB|G4NEC0 | 800 | MGG_00799 "Peptide-N4-(N-acety | 0.575 | 0.443 | 0.336 | 1.9e-47 | |
| ASPGD|ASPL0000031607 | 661 | AN10715 [Emericella nidulans ( | 0.332 | 0.310 | 0.308 | 1.6e-41 | |
| CGD|CAL0005876 | 983 | PNG2 [Candida albicans (taxid: | 0.282 | 0.177 | 0.288 | 3.7e-26 | |
| UNIPROTKB|Q59T41 | 983 | PNG2 "Putative uncharacterized | 0.282 | 0.177 | 0.288 | 3.7e-26 |
| TAIR|locus:2086285 AT3G14920 "AT3G14920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
Identities = 332/572 (58%), Positives = 412/572 (72%)
Query: 23 ANLHKTKL-LPPTLFSQLS-ATTHLNETQ-PTRYFEVTKPI--RLPKTK-PCSYPILSHD 76
++LH+T+ P FS L ++ N T+ PTRYFEV KP LP + PCSY IL HD
Sbjct: 24 SDLHETRSRFKPPQFSPLFFSSLPQNVTKSPTRYFEVQKPPVPNLPTAQQPCSYQILHHD 83
Query: 77 FGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATCKGTQFDRIFGIWLGGVELLRSCTA 136
FGYTY +PPVL+NYT PSHC++ SKIVL+F++T +G QFDRIFG+WL GVE+LRSCTA
Sbjct: 84 FGYTYAKPPVLSNYTLPSHCSSREFSKIVLEFKSTSQGRQFDRIFGVWLDGVEILRSCTA 143
Query: 137 EPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGN 196
EP GIVWSVEKD+T+YHSLLVKN+TQ L+VYLGN++D TYTGVYHV++ HFY +E N
Sbjct: 144 EPRPNGIVWSVEKDVTKYHSLLVKNETQILSVYLGNLIDKTYTGVYHVDVIFHFYQSESN 203
Query: 197 LNDRKHDLDSLASRFYSNADLILPISRNLPMNDGLWFEIKNSVDTQEKEFRTPKNVYRAV 256
L D + +S S AD+ILPISRNLP+NDGLWFEI NS DT+ KEF P+NVYRAV
Sbjct: 204 LQD----VSGYSS---SKADMILPISRNLPLNDGLWFEIVNSNDTKYKEFEIPRNVYRAV 256
Query: 257 LEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGPFREVVVSLDGEVVGAIWPFSVIYT 316
LEVY+SFHE DEFWY NLPN++ + N+L+ NGPFREVVVSLDG++ GA+WPF V++T
Sbjct: 257 LEVYVSFHENDEFWYGNLPNDYVTANNLS-VAGNGPFREVVVSLDGDIAGAVWPFPVVFT 315
Query: 317 GGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNALNVWLIDANLHL 376
GGI+PL W PIT IGSFDLPSYDIEITPFLG++LDG+ HK GFSVTNALNVW IDANLHL
Sbjct: 316 GGINPLLWRPITAIGSFDLPSYDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHL 375
Query: 377 WLDSRSTKTEGKVLKKNVMPLRVSLHADFEGLDGTFLTNVSRSISATGQIRSSYGEITTS 436
WLD EGKVL + L +S +DF+GL+G F T RSI++ G ++SS+G+I T+
Sbjct: 376 WLDQEKEIVEGKVLDFSRSSLEISSVSDFKGLNGNFTTKAKRSITSVGLVKSSHGDIITN 435
Query: 437 WIQNFSYSNSMLISKNENLQIIDQMIHFHDT----------YSQSSHKVYPLRLSIDVLD 486
Q FSY N M++ K+ NLQIIDQ+I D Y+ S K +P L D L+
Sbjct: 436 ANQEFSYENKMVLGKDGNLQIIDQLIQADDRIHAKRASREIYAAKSIKSFPFYLDSDTLE 495
Query: 487 KGNRSFLQLTNVTLGYYEEKSRSSAGF-DFFFSSLKNLQNGQVVLTIVNNFIVDARWSTQ 545
+ N ++L + NV++ + EE+S S G F S L+N Q GQ V+ + NN +V STQ
Sbjct: 496 QQNNTYLAVANVSMAFNEERSESDKGLMRTFKSKLENKQEGQGVMVVKNNLVVSGYGSTQ 555
Query: 546 QVYKYHGSDLCYFRNISSSNDIIAYDKVGNAC 577
QVY Y GSD CYFRNISS N I YDKV + C
Sbjct: 556 QVYNYVGSDQCYFRNISSYNYTILYDKVESVC 587
|
|
| TAIR|locus:2169662 AT5G05480 "AT5G05480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NEC0 MGG_00799 "Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000031607 AN10715 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005876 PNG2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q59T41 PNG2 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| pfam12222 | 427 | pfam12222, PNGaseA, Peptide N-acetyl-beta-D-glucos | 1e-72 |
| >gnl|CDD|221468 pfam12222, PNGaseA, Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 1e-72
Identities = 134/426 (31%), Positives = 210/426 (49%), Gaps = 47/426 (11%)
Query: 54 FEVTKPIRLPKTKPCSYPILSHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATCK 113
FEV +P+ P C +++H F +YG+P V Y PP C S + ++F T
Sbjct: 3 FEVYQPVVTP-GGVCEILLMNHVFNNSYGKPFVGNVYIPPG-CD---FSTVRINFSVTSN 57
Query: 114 GTQFDRIFGIWLGGVELLRSCTAEPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGNI 173
G QFDR+ ++LG +E+ R+ TAEPT GI+W+ KD+T++ +L NQT L LGN+
Sbjct: 58 GRQFDRLAYMYLGDIEVFRTSTAEPTNDGIIWTYIKDMTQFENLWKGNQT--LIFDLGNL 115
Query: 174 VDSTYTGVYHVNITIHFYPAEGNLNDRKHDLDSLASRFYSNADLILPIS-RNLPMNDGLW 232
+D YTG +++ +T FYP + D+I+PIS R N
Sbjct: 116 IDDKYTGSFNMTLTATFYP-GNPVR---------------LPDMIIPISARRSAYNYSSA 159
Query: 233 FEIKNS-VDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPN-EFFSMNHLNRTLEN 290
F + + TQ P YRAVL + +EFW++N+P+ + + +++
Sbjct: 160 FVVPSDNAITQYVSL--PNGTYRAVLSISACGQGGEEFWWSNVPSSDTETFDNVGELYGY 217
Query: 291 GPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNIL 350
PFRE+ + +DG + G +WPF +I+TGGI P FW P+ GI +FDL +I+ITPFL +
Sbjct: 218 SPFREIQLYIDGLLAGVVWPFPIIFTGGIDPGFWRPVVGIDAFDLRQPEIDITPFLPLLT 277
Query: 351 DGEIHKFGFSVTNAL-----------NV---WLIDANLHLWLDSRSTKTEGKV--LKKNV 394
DG H F +VT L +V W+I + LWL+ + T G+ +
Sbjct: 278 DGNTHSFEVTVTGLLTALQGTGTLTGSVASYWVITGVIFLWLNDDGSTTTGQSPPIIAPK 337
Query: 395 MPLRVSLHADFEGLDGTFLTNVSRSISATGQIRSSYGEITTSWIQNFSYSNSMLISKNEN 454
+ ++ D + G N + S G+ +Y +W Q YSN+ + +
Sbjct: 338 PSIAITRFLDPIFVTG---FNGTLYYSVGGERTLNYSSSILAWEQGLEYSNTGQLGQQGA 394
Query: 455 LQIIDQ 460
Q +Q
Sbjct: 395 SQTFNQ 400
|
This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 558 and 775 amino acids in length. There is a conserved TGG sequence motif. PNGase A is a protein which cleaves glycopeptides. Length = 427 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| PF12222 | 427 | PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl aspa | 100.0 | |
| PF09113 | 141 | N-glycanase_C: Peptide-N-glycosidase F, C terminal | 96.29 | |
| PF09112 | 177 | N-glycanase_N: Peptide-N-glycosidase F, N terminal | 94.3 |
| >PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-122 Score=987.94 Aligned_cols=396 Identities=48% Similarity=0.844 Sum_probs=358.8
Q ss_pred EEEEeecCcCCCCCCCceEeEEeeecCccCCCCCeeeeccCCCCCCCCCccEEEEEEEEEEcceeceEEEEEEECCeEee
Q 007132 52 RYFEVTKPIRLPKTKPCSYPILSHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATCKGTQFDRIFGIWLGGVELL 131 (617)
Q Consensus 52 ~~FEV~~Pv~~P~~~~c~~~Ll~h~F~nSyg~Pp~~~~Y~PP~~c~~~~~s~VvL~l~~t~~G~QyDRla~v~l~gvev~ 131 (617)
|+|||++|+..|+. +|+++||+|+||||||+|++...|+||. | +|++|||+|+++|+|||||||++|||||+|||
T Consensus 1 E~fev~~P~~~p~~-~c~~~l~~h~F~~Syg~P~~~~~y~Pp~-c---~~~~VvL~~~~~~~G~QyDRl~~v~l~gvev~ 75 (427)
T PF12222_consen 1 EVFEVTPPVVTPKG-VCSVLLLNHSFGNSYGKPPVGTYYTPPD-C---SFSKVVLNLTVTSKGRQYDRLAGVWLGGVEVW 75 (427)
T ss_pred CceEEcCCCCCCCC-ceEEEEeeeeeccccCCCceeeecCCCC-C---cceEEEEEEEEEecceecceEEEEEECCEEEE
Confidence 78999999988885 9999999999999999999876788777 7 79999999999999999999999999999999
Q ss_pred eeccCCccCCceeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecCCCCCCCCcCCCCcccccC
Q 007132 132 RSCTAEPTRTGIVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGNLNDRKHDLDSLASRF 211 (617)
Q Consensus 132 RtSTaEP~~~gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~~~~~~~l~~~ 211 (617)
|||||||+++||+|+++||||+|++||+ ++|+|+|+|+|+||++|||+|+|+|||+||+.+ . .
T Consensus 76 RtSTaEP~~~gi~wt~~KDvT~Y~~L~~--~~~~~~~~l~N~v~~~ytG~f~v~lt~~fy~~~-------~--------~ 138 (427)
T PF12222_consen 76 RTSTAEPTPNGIVWTVSKDVTRYSSLFK--KPQTLIFDLGNIVDDTYTGSFNVTLTLTFYPAD-------D--------P 138 (427)
T ss_pred eecCCCCCCCcceEEEEEcHHHhHHHhc--CCceEEEEeCcEeccccccEEEEEEEEEEecCC-------C--------C
Confidence 9999999999999999999999999999 589999999999999999999999999999873 1 3
Q ss_pred CCCCCEEEeCcCC-CCCCCCeeEEEecCCCcceeeEecCCCceEEEEEEEeecCCCceeeecCCCchhhcccccCC-CCC
Q 007132 212 YSNADLILPISRN-LPMNDGLWFEIKNSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNR-TLE 289 (617)
Q Consensus 212 ~~~aD~IiPis~~-~~~~~g~~f~i~n~~d~~~~~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~~~~~~~-~~g 289 (617)
.++||+||||+++ ++.|.+.||.|++. ...+.+.||+|++||+||||||||++|||||+|+||+|...++..+ .+|
T Consensus 139 ~~~ad~i~Pis~~~s~~n~~~~f~ip~~--~~~~~~~~P~Nt~ra~lei~asg~~~eEFWYsNv~d~~~~~f~~~~~~~G 216 (427)
T PF12222_consen 139 AKPADLILPISANKSPYNSPSWFSIPSD--DAVTSLVLPRNTYRAVLEIFASGNGNEEFWYSNVPDSDVDAFNNAGELYG 216 (427)
T ss_pred CCCCceEECcccCCCCCCCcceEEecCc--cceeeEeCCCCcEEEEEEEEecCCCcccceecCCChHHhhhhcccccccC
Confidence 5679999999987 56777899999643 3456677999999999999999999999999999999988766544 499
Q ss_pred CCceeEEEEEECCeEEEEECccceEEeCCccCCCccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-----
Q 007132 290 NGPFREVVVSLDGEVVGAIWPFSVIYTGGISPLFWAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA----- 364 (617)
Q Consensus 290 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~----- 364 (617)
|||||||+|+|||++||++|||||||||||+|+|||||++|||||+|+|+||||||||+|+|||+|+|+|+|+|+
T Consensus 217 ~gpfReV~V~iDg~lag~~~PfPvIfTGGI~P~lWrPI~~i~aFdl~~y~iDlTPfLp~L~dg~~h~~~i~V~~~~~~~~ 296 (427)
T PF12222_consen 217 NGPFREVQVYIDGQLAGVVWPFPVIFTGGINPFLWRPIVGIGAFDLPSYDIDLTPFLPLLWDGKPHTFEIRVVNAEDDGD 296 (427)
T ss_pred CCCcEEEEEEECCEEEEEECCCCeEEeCCcCcccccccCCCcccCCCceeEEeccchhcccCCCccEEEEEEEccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---------cccEEEeeEEEEEEeCCCceeeceeEEeecCCceeeeccc----ccCCce--eEEEEEEEEEEEEEEEEcC
Q 007132 365 ---------LNVWLIDANLHLWLDSRSTKTEGKVLKKNVMPLRVSLHAD----FEGLDG--TFLTNVSRSISATGQIRSS 429 (617)
Q Consensus 365 ---------~~~W~vsgnL~lwlD~~~~~ttG~l~~~~~p~~~~~~~~~----~~g~~g--~~~~~a~R~ls~~g~v~ss 429 (617)
.++|+|+||||+|+|++...++|++....++.+.....+. ..|.++ .|.+.++|++++++
T Consensus 297 g~~~~~~~v~~~W~VsgnL~lwld~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~y~~~~~r~l~~~~----- 371 (427)
T PF12222_consen 297 GSATLTNSVGSNWYVSGNLFLWLDSSSSSTTGKSPSVVSPEPSISVSSFISIFSTGFNGTLSYSVSASRSLSITS----- 371 (427)
T ss_pred ccccccCccCceEEEEEEEEEEECCCCcccCCCccceecCCcceeeeeeeeccCCCceeEEEEEEEEEEEEEEee-----
Confidence 3799999999999999999999998887777655443332 235665 49999999999988
Q ss_pred CCceEEEEEEEEEEEeeEEeccCCceeeEEEEEEEEE---------EEEeeEEEEEee
Q 007132 430 YGEITTSWIQNFSYSNSMLISKNENLQIIDQMIHFHD---------TYSQSSHKVYPL 478 (617)
Q Consensus 430 ~G~~ttt~~Q~~~f~N~~~~s~~G~~Q~v~Qt~~~~~---------~~~~~~~~syPL 478 (617)
+.+++|+|+++|+|.|.++++|..|.++|++++.. ++..+.+++|||
T Consensus 372 --~~~~~~~q~l~~sN~~~~s~~g~~Q~~~q~~~~~~~~~~~~~~~~~~~~~~~~yPl 427 (427)
T PF12222_consen 372 --SSTVSWSQNLSYSNVQQYSKFGNSQSVNQTTSGTSSSTHFGESAIYTSSLTFSYPL 427 (427)
T ss_pred --EEEEEEEeEEEEEEEEEEcccCcEEEEEEEEEeeEEEEEecccceeEEEEEEeccC
Confidence 67899999999999999999999999999998865 345688999997
|
PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage. |
| >PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets | Back alignment and domain information |
|---|
| >PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 66/441 (14%), Positives = 139/441 (31%), Gaps = 93/441 (21%)
Query: 180 GVYHVNITIHFYPAEGNLNDRKHDLD---SLASRFYSNADLILPISRNLPMNDGLWFEIK 236
++ +N+ N N + L+ L + N S N+ +
Sbjct: 183 KIFWLNL--------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-------I 227
Query: 237 NSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFSMNHLNRTLENGPFREV 296
+S+ + + K Y L V L A N F N + L F++V
Sbjct: 228 HSIQAELRRLLKSKP-YENCLLV-L-----LNVQNAKAWNAF---NLSCKILLTTRFKQV 277
Query: 297 VVSLDGEVVGAIWPFSVIYTGGISP-----LFWAPITGIGSFDLPSYDIEITPFLGNILD 351
L I ++ ++P L DLP + P +I
Sbjct: 278 TDFLSAATTTHI--SLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSI-- 332
Query: 352 GEIHKFGFSVTNALNVWLIDANLHLWLDSRSTKTEGKVLKKNVMPLRVSLHAD-FEGLDG 410
S+ + L W W K +++ ++ L + + F+ L
Sbjct: 333 -----IAESIRDGLATW------DNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRL-S 379
Query: 411 TFLTNVSRSISATGQIRSSYGEITTS-----WIQNFSYSNSMLISKNENLQIIDQ----- 460
F + I T W ++++K ++++
Sbjct: 380 VFPPSA---------------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 461 MIHFHDTYSQSSHKVYPLRLSIDVLDKGNRSFLQLTNVTLGYYEEKSRSSAGFDFFFSS- 519
I Y + L++ ++ +RS + N+ + + +F+S
Sbjct: 425 TISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 520 ---LKNLQNGQVVLTIVNNFIVDARWSTQQVYKYHGSDLCYFRNISSS-NDIIAYDKVGN 575
LKN+++ + + T+ +D R+ Q++ ++ + +I ++ + Y
Sbjct: 478 GHHLKNIEHPERM-TLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKP--Y 533
Query: 576 ACNGERTDSRLGYEIRRWLPS 596
C+ + RL I +LP
Sbjct: 534 ICDNDPKYERLVNAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| 3ks7_A | 397 | Putative putative pngase F; putative peptide:N-gly | 98.71 | |
| 3pms_A | 326 | Peptide:N-glycosidase F; jelly roll fold, N-glycan | 98.4 |
| >3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F (pngase F), structural GENO joint center for structural genomics; 2.30A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.71 E-value=9e-07 Score=93.47 Aligned_cols=225 Identities=23% Similarity=0.308 Sum_probs=150.1
Q ss_pred cEEEEEEEEEEcceeceEEEEEEE-------------C---------------------------CeEeeeeccCCccC-
Q 007132 102 SKIVLDFEATCKGTQFDRIFGIWL-------------G---------------------------GVELLRSCTAEPTR- 140 (617)
Q Consensus 102 s~VvL~l~~t~~G~QyDRla~v~l-------------~---------------------------gvev~RtSTaEP~~- 140 (617)
..|.|+++..++|.-|||-+.+|| . .+||.|-=||---.
T Consensus 65 ~~v~~~~~~~SnGD~~DktGS~Fvip~~~~~~~l~i~~g~~~~P~~~~~~~~~~~Gii~~~~Y~p~~ElmRf~TpfGvg~ 144 (397)
T 3ks7_A 65 VSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGH 144 (397)
T ss_dssp EEEEEEEEEEESSCCSCCEEEEEECCSSCSBCHHHHHTTCCCCCCCCHHHHTTCTTSSCBTTBCCCEEEEEEECCSSTBT
T ss_pred CeEEEEEEEccCCCcccccCCEEEEECccccchhhhhcCcccCCceecCCcceeeeeeecCCCCCcchhhhccccccccc
Confidence 489999999999999999999997 2 47999987764321
Q ss_pred -Cc------------------eeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecCCCCCCCCc
Q 007132 141 -TG------------------IVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPAEGNLNDRK 201 (617)
Q Consensus 141 -~g------------------I~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~ 201 (617)
++ =.++.+.|||.+.+||+ +...+.+.++|+-. +-|.|+|.+.|+...
T Consensus 145 ~~~~~~~~~~k~~pvyi~~W~d~v~W~qDITdL~pLL~--Gev~iGi~i~nW~~----~G~~vSL~l~f~~g~------- 211 (397)
T 3ks7_A 145 YSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLE--GEAYVGIYIDTWTS----EGYLVNADIDVKESR------- 211 (397)
T ss_dssp TCCSSCGGGTTTSCTTCCCCCSCEEEEEECGGGGGGTB--EEEEEEEEECCCSS----SCEEEEEEEEEEECS-------
T ss_pred cccccccchhcCCcccccccccCceEEeEchhhHHhhC--CCeEEEEEeccccc----ccEEEEEEEEEecCC-------
Confidence 11 12456889999999999 45666666666543 357899999999762
Q ss_pred CCCCcccccCCCCCCEEEeCcCCCCCCCCeeEE-EecCCCcceeeEecCCCceEEEEEEEeecCCCceeeecCCCchhhc
Q 007132 202 HDLDSLASRFYSNADLILPISRNLPMNDGLWFE-IKNSVDTQEKEFRTPKNVYRAVLEVYLSFHERDEFWYANLPNEFFS 280 (617)
Q Consensus 202 ~~~~~~l~~~~~~aD~IiPis~~~~~~~g~~f~-i~n~~d~~~~~v~iP~Nt~rA~lev~aSg~~~eEFWYsNvpd~y~~ 280 (617)
... ...+...|+||-... .--|+.|. +-+. ......+++|.|+..|.|-..++|||.++ | =++|..
T Consensus 212 ~~~------~~~~~~~V~PLfNt~-~~~Gq~Y~d~fn~-k~l~v~Ftlp~~~knv~Lr~itTGHGg~~----g-gdEFc~ 278 (397)
T 3ks7_A 212 LAC------DVLPKRHVEPLMNTV-YYMGQSYPDIFAR-RDVSTDFTVPKGAKNIRLKYIVTGHGGHS----G-GDEFVQ 278 (397)
T ss_dssp CTT------CBCCCEEEEEEEECC-CCSSCCCCCGGGT-CCEEEEEEECTTCEEEEEEEEEEEECCST----T-STTTSC
T ss_pred cch------hccccceEEEeeccc-cccCccccchhcc-cceeEEEEcCCCccEEEEEEEEecCCCCC----C-CCcccc
Confidence 111 233467899997632 11144442 2233 34568899999999999999999998632 2 233321
Q ss_pred ccccCCCCCCCceeEEEEEECCeEEEEECcc-------ceEE--eCCc----------------------------cCCC
Q 007132 281 MNHLNRTLENGPFREVVVSLDGEVVGAIWPF-------SVIY--TGGI----------------------------SPLF 323 (617)
Q Consensus 281 ~~~~~~~~g~GpfREV~V~iDG~laGv~~Pf-------PvIf--TGGI----------------------------~P~l 323 (617)
|+=.|+|||.++=.-.|- +..- +|++ +=.-
T Consensus 279 -------------k~h~v~vdG~~v~~~~pWr~dC~s~r~~Np~sG~W~~~~~a~~~~~~g~~~ke~e~~lsSSDlSRsN 345 (397)
T 3ks7_A 279 -------------KRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSN 345 (397)
T ss_dssp -------------CCEEEEETTEEEEEECCCBSCGGGGGGGCTTCCEEEEEEEEEEEETTEEEEEEEEEEEEGGGSCBSS
T ss_pred -------------eeeEEEECCEEeEEeccccccccccccccCCCCccccccchhhcccccccchhhccccccccccccc
Confidence 555788888888655543 2221 2221 1234
Q ss_pred ccccccCCCCCCCceeEEccccccccccCCeeEEEEEEEcC-------cccEEEeeEEE
Q 007132 324 WAPITGIGSFDLPSYDIEITPFLGNILDGEIHKFGFSVTNA-------LNVWLIDANLH 375 (617)
Q Consensus 324 WrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~-------~~~W~vsgnL~ 375 (617)
|=|=. +.++..|+|.-.. -| .|+|.|.|..| .+.|.|||-|+
T Consensus 346 WCPG~-----~v~p~~i~Lg~l~----~G-~Ht~~v~iP~a~~~~g~~~~~W~VS~~lv 394 (397)
T 3ks7_A 346 WCPGS-----DVVPEEAVIGTLA----PG-KHTFTVSIPEAQAVDGNKLNHWLVSAYLV 394 (397)
T ss_dssp CCTTC-----EECCEEEEEECCC----SE-EEEEEEECTTCCCCBTTBCCEEEEEEEEE
T ss_pred CCCCc-----ccCceEEeccccC----CC-ceEEEEECCCCcccCCcccceEEEEEEEe
Confidence 54422 3456777765433 34 89999999854 47999999764
|
| >3pms_A Peptide:N-glycosidase F; jelly roll fold, N-glycanase, hydrolase; HET: GOL; 1.57A {Elizabethkingia meningoseptica} PDB: 1pgs_A 1pnf_A* 1png_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| d1pgsa1 | 137 | Peptide:N-glycosidase F, PNGase F {Flavobacterium | 97.56 | |
| d1pgsa2 | 174 | Peptide:N-glycosidase F, PNGase F {Flavobacterium | 89.07 | |
| d1jz8a3 | 207 | beta-Galactosidase {Escherichia coli [TaxId: 562]} | 82.22 |
| >d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: PHM/PNGase F family: Glycosyl-asparaginase domain: Peptide:N-glycosidase F, PNGase F species: Flavobacterium meningosepticum [TaxId: 238]
Probab=97.56 E-value=0.00018 Score=64.55 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=88.0
Q ss_pred eeecCccCCCCCeeeeccCCCCCCCCCccEEEEEEEEEE--cc-eeceEEEEEEE------CCeEeeeeccCCccCC---
Q 007132 74 SHDFGYTYGQPPVLTNYTPPSHCTTHRLSKIVLDFEATC--KG-TQFDRIFGIWL------GGVELLRSCTAEPTRT--- 141 (617)
Q Consensus 74 ~h~F~nSyg~Pp~~~~Y~PP~~c~~~~~s~VvL~l~~t~--~G-~QyDRla~v~l------~gvev~RtSTaEP~~~--- 141 (617)
++.||.-|++- +.+.+.=|... .+|++|.|.++.+| .| -.+||++.|+| ...||-|==||-=...
T Consensus 13 ~~~~ggG~~~~-~~~~~~lP~~~--s~y~~i~m~~~l~Cp~~gC~~WD~~a~i~v~~~~~~~~~e~~r~itpyG~g~~~~ 89 (137)
T d1pgsa1 13 KNAFGDGLSQS-AEGTFTFPADV--TTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWVGTEKL 89 (137)
T ss_dssp EECCSSSCCSE-EEEEEEECSCC--TTEEEEEEEEEECCGGGCSCCSCCEEEEEEECTTTCCEEEEEEEECCSSSCSTTS
T ss_pred hccccCCccce-EEEEEECCccc--cCcceEEEEEEEecCCCCCCccceEEEEEeecCCCccceeeeheecccccccccC
Confidence 45788888763 56777778764 59999999999998 46 78999999998 4578888888764432
Q ss_pred ceeEEEEEehhhhHhhhccCCCccEEEEEcceecceeeeEEEEEEEEEeecC
Q 007132 142 GIVWSVEKDITRYHSLLVKNQTQPLAVYLGNIVDSTYTGVYHVNITIHFYPA 193 (617)
Q Consensus 142 gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~ 193 (617)
+.-|. -|||.|.+||+ +...+.+.++|+..+. +.++|.+.|+.+
T Consensus 90 ~~~W~--~DVTd~~~lL~--g~v~i~~~i~~W~~~g----~~v~l~f~Fi~G 133 (137)
T d1pgsa1 90 PRGLE--IDVTDFKSLLS--GNTELKIYTETWLAKG----REYSVDFDIVYG 133 (137)
T ss_dssp SSCEE--EECGGGTTTSS--EEEEEEEEECCCSTTC----EEEEEEEEEEES
T ss_pred CCCcE--EechhhHHHhC--CCEEEEEEEccccCCC----EEEEEEEEEecC
Confidence 12474 89999999999 5788999999998874 589999999987
|
| >d1pgsa2 b.121.1.1 (A:141-314) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]} | Back information, alignment and structure |
|---|
| >d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|