Citrus Sinensis ID: 007137

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI

ccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccccEEEEEEEEEEEEccccccEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEEEccccccccccccccccEEEEEEEccEEccccEEEEEEEEEEEccccccccccccccEEcccEEEEcccccccccccccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEEEEEEccccccccccHHHHccccccccccHHHHcccccccccccEEEEccccEEEccEEEccccEEEEEEEcccccccccccEEEEEEcccccccEEEcccEEEEEEEEccccccEEEEEEEEEEEccccccccEEEccccccccccEEEEEccccccEEEEEEEEcccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cHHHHHHHHHHHHHHHHHHHHHccccHHHEEccEEEEEEccccEEEEEEEEEEEEcccccccEEEEEccHHHHccEEEEEEEEcccccccccEccEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEcccccccHHccccccEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccccEEHHHHccccccccHHEEEEEEcccccccEEEEEEEccEEccccccccccEEEEEEcccccccccccEEEEEEcccHHHHHHcccccEEEEEEccccccccEEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEccccEEEEEEEccccHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLkvenegsepvsevllafpdlqVKDLALlkasphegkgkvkslsaslpvenvkpngmpaALTFYAVKLpkalgkgdsytFDVLAVFAHalrpfpekitqADIQLVVFQesafyltpyVVKVQSLsvklpesriESYTKLEntkihgseikygpyenlpsfsyspivvhfesnqpfavGQEVVREIEIShwgnvqvtEHYKLvhggaqnkgefsrldyqarptirGASAFKYLIakmpprvhsvyyrdeignistsnlwgdskktelliepryplfggwrtaftigyglplkDFLFelegnrflnitfgspmnelvIDNLIVKVVlpegsgdisvsapfpvnqweetklshldltgrpvvvlqktnvvpehnQFFQVYYKFsklsmlrepfMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVmakhstvvdcyekktgirdsENRVAAQQQKITALRQEVENLLELIDEI

MGVRRKMALRFDLIIFTILLFASPVLSDLILSkvdrridltsqivritstlkvenegsepVSEVLLAFPDLQVKDLALLKasphegkgkvkslsaslPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIEsytklentkihgseikYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGnistsnlwgdskKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQsssaasqilpKVEELVAKEKDlqekvmakhstvvdcyekktgirdsenrVAAQQQKITALRQEVENLLELIDEI

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGllkelskelklvlsflqsssaasqILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI

******MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVEN****PVSEVLLAFPDLQVKDLALL***************************MPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQ***************************AKHSTVVDCYEK***********************************

*****KMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEG************V*NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIE**************IKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMS******************AAIQQVENVINRCLTTHDKLEASLR*****************ADGLLKELSKEL**********************LV****D*****************************************EVENLLELID**

MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASP**********SASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDS**********ITALRQEVENLLELIDEI

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		616	2.2.26 [Sep-21-2011]
Q9SFX3		614	Dolichyl-diphosphooligosa	yes	no	0.964	0.967	0.666	0.0
Q0DJC5		615	Dolichyl-diphosphooligosa	yes	no	0.954	0.956	0.645	0.0
Q9ZUA0		464	Dolichyl-diphosphooligosa	no	no	0.745	0.989	0.515	1e-134
B9FDT1		473	Dolichyl-diphosphooligosa	no	no	0.699	0.911	0.539	1e-131
Q4R4T0		607	Dolichyl-diphosphooligosa	N/A	no	0.907	0.920	0.342	3e-88
P04843		607	Dolichyl-diphosphooligosa	yes	no	0.907	0.920	0.342	6e-88
Q5RFB6		607	Dolichyl-diphosphooligosa	yes	no	0.907	0.920	0.340	8e-88
Q9GMB0		608	Dolichyl-diphosphooligosa	yes	no	0.915	0.927	0.349	2e-87
Q91YQ5		608	Dolichyl-diphosphooligosa	yes	no	0.892	0.904	0.344	2e-87
P07153		605	Dolichyl-diphosphooligosa	yes	no	0.855	0.871	0.341	2e-85

>sp\|Q9SFX3\|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1	Back alignment and function desciption

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/594 (66%), Positives = 480/594 (80%)

Query: 23  SPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKAS 82
           +P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP     +LA L  +
Sbjct: 21  TPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFLGNNLAYLSVA 80

Query: 83  PHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRP 142
           P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V+A F + L+P
Sbjct: 81  PSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQP 140

Query: 143 FPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYG 202
           FPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENTK+ GSE+KYG
Sbjct: 141 FPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENTKLQGSELKYG 200

Query: 203 PYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEF 262
           PY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +VH GAQ KGEF
Sbjct: 201 PYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVVHRGAQLKGEF 260

Query: 263 SRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRY 322
           SRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSKKTELLIEPR+
Sbjct: 261 SRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSKKTELLIEPRF 320

Query: 323 PLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDI 382
           PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+VVLPEGS DI
Sbjct: 321 PLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQVVLPEGSKDI 380

Query: 383 SVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSKLSMLREPFML 442
           SV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HNQ  QVYYKFS +++L EP ML
Sbjct: 381 SVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVYYKFSNINLLSEPLML 440

Query: 443 IFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHDKLEA 502
           I GFF LF+  I+Y   D+SISKSS +YLA+LQWDEV A +Q+V++++ +CL THDKLEA
Sbjct: 441 ISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQEVQSIVQKCLATHDKLEA 500

Query: 503 SLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEK 562
           SLRDLSRTGD+Q CKAARK+ D LLK+LSKELK +L FLQS  +AS I PKVEELV KEK
Sbjct: 501 SLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFPSASHISPKVEELVVKEK 560

Query: 563 DLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDEI 616
           +LQEK+MAKH+TVV+ YEKK+  RD ENR+A+QQQKI ALRQE+E+LLE IDEI
Sbjct: 561 ELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQEIEDLLEFIDEI 614

Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 8

>sp\|Q0DJC5\|OST1A_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica GN=OST1A PE=2 SV=1	Back alignment and function description

>sp\|Q9ZUA0\|OST1B_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1	Back alignment and function description

>sp\|B9FDT1\|OST1B_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Oryza sativa subsp. japonica GN=OST1B PE=2 SV=1	Back alignment and function description

>sp\|Q4R4T0\|RPN1_MACFA Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1 PE=2 SV=1	Back alignment and function description

>sp\|P04843\|RPN1_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens GN=RPN1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RFB6\|RPN1_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=2 SV=1	Back alignment and function description

>sp\|Q9GMB0\|RPN1_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1	Back alignment and function description

>sp\|Q91YQ5\|RPN1_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1	Back alignment and function description

>sp\|P07153\|RPN1_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus GN=Rpn1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		616
225457618		610	PREDICTED: dolichyl-diphosphooligosaccha	0.990	1.0	0.762	0.0
224061851		615	predicted protein [Populus trichocarpa]	0.990	0.991	0.736	0.0
224086092		615	predicted protein [Populus trichocarpa]	0.961	0.962	0.753	0.0
255539294		612	ribophorin, putative [Ricinus communis]	0.987	0.993	0.736	0.0
388499090		617	unknown [Medicago truncatula]	0.969	0.967	0.742	0.0
357467147		616	Dolichyl-diphosphooligosaccharide-protei	0.969	0.969	0.740	0.0
449452999		610	PREDICTED: dolichyl-diphosphooligosaccha	0.990	1.0	0.739	0.0
356517213		613	PREDICTED: dolichyl-diphosphooligosaccha	0.978	0.983	0.727	0.0
356508519		619	PREDICTED: dolichyl-diphosphooligosaccha	0.977	0.972	0.727	0.0
297842397		614	ribophorin I family protein [Arabidopsis	0.962	0.965	0.669	0.0

>gi\|225457618\|ref\|XP_002274236.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera] gi\|297745585\|emb\|CBI40750.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/610 (76%), Positives = 533/610 (87%)

Query: 7   MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLL 66
           M  RFDL I  I + + PVLSDLILSKVDRRIDLTSQ+VRITSTLKVEN G++PVSEVLL
Sbjct: 1   MGFRFDLFIVLIAILSVPVLSDLILSKVDRRIDLTSQVVRITSTLKVENSGNDPVSEVLL 60

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
           AFP+ Q K+LA L AS  EGKGK K  ++SLPVE V P GMP AL FY+V LPK LGKG+
Sbjct: 61  AFPEHQEKNLAYLTASFREGKGKGKGSTSSLPVEVVHPQGMPPALVFYSVSLPKGLGKGE 120

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESY 186
           S T DVL VF H+L+PFP++ITQAD QLVVFQ+S  YL+PY VK QSLSVKLP++RIESY
Sbjct: 121 SLTLDVLVVFTHSLKPFPKEITQADFQLVVFQDSGHYLSPYEVKFQSLSVKLPDARIESY 180

Query: 187 TKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVT 246
           T+LENTK  GSEIKYGPYEN P FSYSPIVVHFE NQPFAV +++VREIEISHWGNVQVT
Sbjct: 181 TRLENTKTVGSEIKYGPYENHPPFSYSPIVVHFEQNQPFAVAEQLVREIEISHWGNVQVT 240

Query: 247 EHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSN 306
           EHYKL+H GAQ+KGEFSRLDYQARP +RGASAF++L+AK+PPR HSVY+RDEIGNISTS+
Sbjct: 241 EHYKLIHAGAQSKGEFSRLDYQARPHVRGASAFRHLVAKLPPRAHSVYFRDEIGNISTSH 300

Query: 307 LWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVI 366
           LWGD KKTEL IEPRYP+FGGWRT+F IGYGLPL+DFLFE  G RFLNITFG PMNE+VI
Sbjct: 301 LWGDLKKTELEIEPRYPMFGGWRTSFFIGYGLPLQDFLFESGGKRFLNITFGCPMNEVVI 360

Query: 367 DNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQV 426
           DNLIVKVVLPEGS DISVSAPF V QW+ETKLSHLD+ GRPV VL+KTNVVPEHNQ FQV
Sbjct: 361 DNLIVKVVLPEGSRDISVSAPFAVKQWQETKLSHLDIVGRPVAVLEKTNVVPEHNQHFQV 420

Query: 427 YYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQV 486
           YYKF+ +S+LREP MLI GFF LFV  IVYMHVDMSISKSSA+Y+ +L W+E+QAAIQQV
Sbjct: 421 YYKFNNISLLREPLMLISGFFFLFVTCIVYMHVDMSISKSSASYVMKLLWEEIQAAIQQV 480

Query: 487 ENVINRCLTTHDKLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSA 546
            ++I+RCL+ HDKLEASLRDLSRTGDVQACKAARKA+DG LKELSKEL+ +L+FLQSS  
Sbjct: 481 HDIISRCLSIHDKLEASLRDLSRTGDVQACKAARKASDGQLKELSKELRPLLAFLQSSPQ 540

Query: 547 ASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEV 606
           A+QILPKVEELVAKE++LQEK+M KH+TV D YEKK+G ++ ENR+A+QQQKI ALRQEV
Sbjct: 541 AAQILPKVEELVAKERELQEKLMLKHTTVADSYEKKSGGKEIENRIASQQQKIVALRQEV 600

Query: 607 ENLLELIDEI 616
           ++LL+ IDEI
Sbjct: 601 DDLLDYIDEI 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224061851\|ref\|XP_002300630.1\| predicted protein [Populus trichocarpa] gi\|118483703\|gb\|ABK93745.1\| unknown [Populus trichocarpa] gi\|222842356\|gb\|EEE79903.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224086092\|ref\|XP_002307811.1\| predicted protein [Populus trichocarpa] gi\|222857260\|gb\|EEE94807.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539294\|ref\|XP_002510712.1\| ribophorin, putative [Ricinus communis] gi\|223551413\|gb\|EEF52899.1\| ribophorin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|388499090\|gb\|AFK37611.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357467147\|ref\|XP_003603858.1\| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] gi\|355492906\|gb\|AES74109.1\| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449452999\|ref\|XP_004144246.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus] gi\|449489357\|ref\|XP_004158288.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356517213\|ref\|XP_003527283.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356508519\|ref\|XP_003523003.1\| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297842397\|ref\|XP_002889080.1\| ribophorin I family protein [Arabidopsis lyrata subsp. lyrata] gi\|297334921\|gb\|EFH65339.1\| ribophorin I family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		616
TAIR\|locus:2014579		614	AT1G76400 "AT1G76400" [Arabido	0.980	0.983	0.635	8.6e-207
TAIR\|locus:2065378		464	AT2G01720 "AT2G01720" [Arabido	0.725	0.963	0.525	7e-125
UNIPROTKB\|E2RQ08		607	RPN1 "Uncharacterized protein"	0.933	0.947	0.327	8.2e-83
UNIPROTKB\|A3KN04		609	RPN1 "Uncharacterized protein"	0.933	0.944	0.332	2.2e-82
UNIPROTKB\|F1SPG2		608	RPN1 "Dolichyl-diphosphooligos	0.933	0.945	0.332	3.6e-82
MGI\|MGI:98084		608	Rpn1 "ribophorin I" [Mus muscu	0.936	0.949	0.325	3.6e-82
ZFIN\|ZDB-GENE-030131-4286		598	rpn1 "ribophorin I" [Danio rer	0.961	0.989	0.323	3.6e-82
UNIPROTKB\|P04843		607	RPN1 "Dolichyl-diphosphooligos	0.936	0.950	0.323	4.5e-82
UNIPROTKB\|Q9GMB0		608	RPN1 "Dolichyl-diphosphooligos	0.933	0.945	0.332	4.5e-82
UNIPROTKB\|E1C0F1		601	RPN1 "Dolichyl-diphosphooligos	0.905	0.928	0.333	7.4e-82

TAIR\|locus:2014579 AT1G76400 "AT1G76400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2000 (709.1 bits), Expect = 8.6e-207, P = 8.6e-207
 Identities = 384/604 (63%), Positives = 467/604 (77%)

Query:    13 LIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQ 72
             L++  I L A+P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP   
Sbjct:    11 LLLLAIALLATPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFL 70

Query:    73 VKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDV 132
               +LA L  +P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V
Sbjct:    71 GNNLAYLSVAPSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEV 130

Query:   133 LAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENT 192
             +A F + L+PFPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENT
Sbjct:   131 VAAFTNVLQPFPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENT 190

Query:   193 KIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLV 252
             K+ GSE+KYGPY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +V
Sbjct:   191 KLQGSELKYGPYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVV 250

Query:   253 HGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSK 312
             H GAQ KGEFSRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSK
Sbjct:   251 HRGAQLKGEFSRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSK 310

Query:   313 KTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVK 372
             KTELLIEPR+PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+
Sbjct:   311 KTELLIEPRFPLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQ 370

Query:   373 VVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQVYYKFSK 432
             VVLPEGS DISV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HNQ  QVYYKFS 
Sbjct:   371 VVLPEGSKDISVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVYYKFSN 430

Query:   433 LSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINR 492
             +++L EP MLI GFF LF+  I+Y   D+SISKSS +YLA+LQWDEV A +Q+V++++ +
Sbjct:   431 INLLSEPLMLISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQEVQSIVQK 490

Query:   493 CLTTHDKLEASLRDLSRTGDVQACKAARKAADGXXXXXXXXXXXXXXXXXXXXXXXXILP 552
             CL THDKLEASLRDLSRTGD+Q CKAARK+ D                         I P
Sbjct:   491 CLATHDKLEASLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFPSASHISP 550

Query:   553 KVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLEL 612
             KVEELV KEK+LQEK+MAKH+TVV+ YEKK+  RD ENR+A+QQQKI ALRQE+E+LLE 
Sbjct:   551 KVEELVVKEKELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQEIEDLLEF 610

Query:   613 IDEI 616
             IDEI
Sbjct:   611 IDEI 614

GO:0004576 "oligosaccharyl transferase activity" evidence=ISS

GO:0004579 "dolichyl-diphosphooligosaccharide-protein glycotransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

TAIR\|locus:2065378 AT2G01720 "AT2G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RQ08 RPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A3KN04 RPN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPG2 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:98084 Rpn1 "ribophorin I" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-4286 rpn1 "ribophorin I" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|P04843 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9GMB0 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0F1 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RFB6	RPN1_PONAB	2, ., 4, ., 1, ., 1, 1, 9	0.3408	0.9074	0.9209	yes	no
Q9SFX3	OST1A_ARATH	2, ., 4, ., 9, 9, ., 1, 8	0.6666	0.9642	0.9674	yes	no
Q9GMB0	RPN1_PIG	2, ., 4, ., 1, ., 1, 1, 9	0.3492	0.9155	0.9276	yes	no
P07153	RPN1_RAT	2, ., 4, ., 1, ., 1, 1, 9	0.3418	0.8555	0.8710	yes	no
Q91YQ5	RPN1_MOUSE	2, ., 4, ., 1, ., 1, 1, 9	0.3447	0.8928	0.9046	yes	no
P04843	RPN1_HUMAN	2, ., 4, ., 1, ., 1, 1, 9	0.3425	0.9074	0.9209	yes	no
Q0DJC5	OST1A_ORYSJ	2, ., 4, ., 9, 9, ., 1, 8	0.6457	0.9545	0.9560	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.119	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		616
pfam04597		429	pfam04597, Ribophorin_I, Ribophorin I	1e-167

>gnl\|CDD\|218165 pfam04597, Ribophorin_I, Ribophorin I	Back alignment and domain information

 Score =  484 bits (1247), Expect = e-167
 Identities = 183/437 (41%), Positives = 260/437 (59%), Gaps = 14/437 (3%)

Query: 28  DLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGK 87
                 V+R IDLT   V+ T  + ++N G EP SE   AFP  +  +LA L A   +  
Sbjct: 1   VWENVNVERTIDLTKSYVKETIKITIKNIGDEPQSEYYFAFPPDEADNLAGLSAK--DKD 58

Query: 88  GKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKI 147
            K K     + VEN    G      ++ + LPK L  G+  T  V  V  + L+P P +I
Sbjct: 59  AKEKGKFEPIEVENGSDTG------YFKITLPKPLAPGEQVTLKVSYVLTNPLKPLPAEI 112

Query: 148 TQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIH--GSEIKYGPYE 205
           TQ++ QL++++ +A++ +PY  K Q   +K P   I SYTK  N      G+ + YGPYE
Sbjct: 113 TQSEKQLLLYETNAYFYSPYPTKKQKTKIKGPSGNILSYTKTPNLPPTRQGNTLTYGPYE 172

Query: 206 NLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRL 265
           N+P+FS  PI VH+E+N+P      + R+IE+SHWGN+ V E+Y+L + GA+ KG FSR+
Sbjct: 173 NVPAFSLEPITVHYENNKPLITVTNLERDIEVSHWGNIAVEEYYELTNNGAKLKGGFSRV 232

Query: 266 DYQ-ARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPL 324
           DYQ    + R +SA K L   +P     VYY DEIGN+STS +  D    EL ++PR+PL
Sbjct: 233 DYQKGSYSTRNSSALKSLKTPLPAGATDVYYTDEIGNVSTSRVREDKDSAELELKPRFPL 292

Query: 325 FGGWRTAFTIGYGLPLKDFLFELEGNRF-LNITFGSPMNELVIDNLIVKVVLPEGSGDIS 383
           FGGW+  FTIG+ LPL DFL +   N + L + F +   ++V DN+ +KV+LPEG+ DI 
Sbjct: 293 FGGWKYNFTIGWNLPLSDFLRKDGDNTYVLKVPFLNGPKDVVYDNVTLKVILPEGAEDIK 352

Query: 384 VSAPFPVNQWE-ETKLSHLDLTGRPVVVLQKTNVVPEHN-QFFQVYYKFSKLSMLREPFM 441
           V  PFP++  E E + S+LD  GRPVV L+K N+V EH  Q   V YK+SK ++LR+P +
Sbjct: 353 VETPFPIDSVELELEKSYLDTKGRPVVTLEKKNLVDEHRDQDVLVTYKYSKSAILRKPLL 412

Query: 442 LIFGFFSLFVAGIVYMH 458
           +  GFF LF+A I+   
Sbjct: 413 IAGGFFILFLAVILLGR 429

Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		616
KOG2291		602	consensus Oligosaccharyltransferase, alpha subunit	100.0
PF04597		432	Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ri	100.0
PF14966		97	DNA_repr_REX1B: DNA repair REX1-B	98.86
PF08487		118	VIT: Vault protein inter-alpha-trypsin domain; Int	92.68
PF09972		511	DUF2207: Predicted membrane protein (DUF2207); Int	92.42
smart00609		130	VIT Vault protein Inter-alpha-Trypsin domain.	88.96
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.65
PF12729		181	4HB_MCP_1: Four helix bundle sensory module for si	88.59
PRK09039		343	hypothetical protein; Validated	87.66
PRK11637		428	AmiB activator; Provisional	86.77
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	85.95
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.88
PF12072		201	DUF3552: Domain of unknown function (DUF3552); Int	82.25
PRK12704		520	phosphodiesterase; Provisional	81.05

>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=3.6e-159  Score=1269.15  Aligned_cols=578  Identities=44%  Similarity=0.675  Sum_probs=544.9

Q ss_pred             ccCccCCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCceEEEEEeCCccccceeEEEEeeCCCCCccccccccccee
Q 007137           21 FASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVE  100 (616)
Q Consensus        21 ~~~~~~~~~~n~~v~RtIDLs~~~Vk~t~~i~vkN~g~~p~~~y~~~lp~~~~~~ls~i~a~~~~~k~k~~~~~~~L~v~  100 (616)
                      |++.+.++|+|.|++|||||++|+||++++++++|+|++|+++|.+++++.+..+||+++|...+++++.   ...+++.
T Consensus        23 ~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~~---~l~~s~~   99 (602)
T KOG2291|consen   23 AASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVAFTEGKKKT---LLKLSVN   99 (602)
T ss_pred             cccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEeeccCcccc---ccccccC
Confidence            3667789999999999999999999999999999999999999999999999999999999877766542   2456667


Q ss_pred             eccCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEecC
Q 007137          101 NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPE  180 (616)
Q Consensus       101 ~~~~~~~~~~~~~y~V~Lp~pl~pg~~vtl~V~~v~t~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SPY~T~~q~t~v~l~s  180 (616)
                      +.+.++. ++ .+|.|+||.|+.||++++|.|+++++|+++|+|++|+|+|+|+|+|.||+|++|||.|++|+|+|++||
T Consensus       100 ~~~~~~~-~~-~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~Q~t~ikl~S  177 (602)
T KOG2291|consen  100 PPKKDGA-SE-RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKSQSTTIKLPS  177 (602)
T ss_pred             CcccCCC-cc-ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccceeEEEEccc
Confidence            7666553 33 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeCCeEEeccCccCCCCCccCEEEEEeeccceeEEEEEEEEEEEeeeeeeEEEEEEEEEEcCCCCCC
Q 007137          181 SRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKG  260 (616)
Q Consensus       181 ~~iesyT~~~~~~~~~~~i~YGP~~~v~pfs~~pi~Vhyenn~Pf~~v~~L~R~IEVSHWGNIavEE~y~L~N~GAkLkG  260 (616)
                      ++|++||+.++.+++|+.++||||+|+|+|+++|+.||||||.||+++++|+|+|||||||||+|||+|+|+|+||+|||
T Consensus       178 s~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg  257 (602)
T KOG2291|consen  178 SKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKG  257 (602)
T ss_pred             ccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhccCCCcCcccceeEeeecCCCCccCeeEEeccCeeeeeeeecCCCeeEEEeccCCcccCCcceeEEEeecCCc
Q 007137          261 EFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPL  340 (616)
Q Consensus       261 ~FSR~dyq~~~~~~~~~a~~~l~~~LP~~A~dvYYrD~IGNISTS~~r~~~~~~~LeL~PRFPLfGGWk~~FtiGYn~Pl  340 (616)
                      +|||+|||+++..++.++++++.+.||++|+|+||||+||||||||+|.++++++|+|+|||||||||||+|+||||+|+
T Consensus       258 ~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~~eleirPRfPlFGGWkt~ftiGy~lP~  337 (602)
T KOG2291|consen  258 PFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDKTELEIRPRFPLFGGWKTNFTIGYNLPL  337 (602)
T ss_pred             CcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCccceEEeccCCccccCceeeEEEecCCcH
Confidence            99999999987778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEeecCCeEEEEEec-cCCCCceEEEEEEEEEEcCCCCccceecCCCcee-eeceeEEEeecCCCCcEEEEEeccCCc
Q 007137          341 KDFLFELEGNRFLNITF-GSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVP  418 (616)
Q Consensus       341 ~~~L~~~~~~y~L~vpf-~~~~~d~~~d~~~vkIiLPEGA~~I~v~~P~~v~-~~~~~~~tYLDt~GRpvVvl~~~Nlv~  418 (616)
                      ++||++.|++|.|+++| +|+++|++||+++++|+|||||+||++.+||+++ .++++++|||||.||||++++|+|+|+
T Consensus       338 ~eyl~~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~syLDt~GR~Vvv~ek~Nvv~  417 (602)
T KOG2291|consen  338 EEYLFSKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKYSYLDTNGRPVVVLEKNNVVP  417 (602)
T ss_pred             HHHhhccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhhhhhhccCcEEEEEEccccCC
Confidence            99999999999999999 5778999999999999999999999999999999 679999999999999999999999999


Q ss_pred             CCceeEEEEEEeCchhhhhhhHHHHHHHHHHHHHHHhheeeeeEEecCchHHHhhhchHHHHHHHHHHHHHHHHhHhhHH
Q 007137          419 EHNQFFQVYYKFSKLSMLREPFMLIFGFFSLFVAGIVYMHVDMSISKSSAAYLARLQWDEVQAAIQQVENVINRCLTTHD  498 (616)
Q Consensus       419 eh~~~~~V~Y~~~~~~~l~kPL~i~~~~f~lFl~~i~~~rlD~sI~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  498 (616)
                      .|+++|+|+|+|++..||+|||+|+++||++|+++++|.|+||+|++|++. .|+|   |++++.+|++..+++|...|+
T Consensus       418 ~h~~~i~v~Y~f~~~sml~ePL~i~a~ffilf~~~i~y~~~d~~is~~ps~-~a~~---r~~~~~~~~~~~v~~~~~~y~  493 (602)
T KOG2291|consen  418 DHNQDIVVHYTFSKSSMLQEPLLIIAAFFILFFAVIVYVRLDFNISSDPSM-SATR---RVFQILLQLALEVNKCDVMYC  493 (602)
T ss_pred             CCCccEEEEEEechhHhhhccHHHHHHHHHHHHHHheeeecceeeccChhh-hHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999666 5998   799999999999999999999


Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhcccceecc
Q 007137          499 KLEASLRDLSRTGDVQACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDC  578 (616)
Q Consensus       499 ~~~~~~~~~~~~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~k~~e~~~~~~~~~~~~~~~~~~~~~~  578 (616)
                      +|++++++||+++|+++|++|||..+.++|+++++++++++.||+++ ++.+++|++|+.+.+| ++.+.+..+-..|..
T Consensus       494 ~l~~~~~~~~~t~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~l~t~~-~~~~~~~~~~l~~~~k-~~~~~~~~~~~~v~g  571 (602)
T KOG2291|consen  494 SLSEGRFRYKNTENIPTLGGAKKSSPLEKKDLASELVPLPSPLKTSD-STCVANKLPELSCSVK-LVPKTSVMQKHGVEG  571 (602)
T ss_pred             HHHHHHhhccccCCCccccchhhcChhhhhhhhcccCCCcccCCCCC-cchhhhhhhhhhhhhc-cchhHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999997 7999999999999999 777777888888877


Q ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 007137          579 YEKKTGIRDSENRVAAQQQKITALRQEVENLLELI  613 (616)
Q Consensus       579 ~e~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  613 (616)
                      ++|+-+|.+ |+.   +..|.++++.++++++|+|
T Consensus       572 ~~~k~sg~~-e~~---~~~~~~~~~~~~~~i~~~~  602 (602)
T KOG2291|consen  572 NGKKGSGME-EGM---IANKTQYHQRGVDPILDYL  602 (602)
T ss_pred             ccccccccc-hhh---hhcchHHHHhccchhhhcC
Confidence            788877777 555   5566677778888888765

>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2	Back alignment and domain information

>PF14966 DNA_repr_REX1B: DNA repair REX1-B	Back alignment and domain information

>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains	Back alignment and domain information

>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function	Back alignment and domain information

>smart00609 VIT Vault protein Inter-alpha-Trypsin domain	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		616
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 70/397 (17%), Positives = 117/397 (29%), Gaps = 111/397 (27%)

Query: 20  LFASPVLSD--LILSKV-DRRI----D------LTSQIVRITSTLKVENEGSEPVSEVLL 66
           L  S    +  L+L  V + +     +      LT++  ++T  L         +    +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
                +VK L LLK         +      LP E +     P  L+  A  +   L   D
Sbjct: 297 TLTPDEVKSL-LLKY--------LDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWD 345

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQ-----LVVFQESA-----------FYLTPYVVK 170
           ++           +      +  A+ +     L VF  SA           F +    V 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 171 --VQSLSVK-LPESRIESYT------------KLEN-TKIHGSEI-KYGPYENLPSFSYS 213
             V  L    L E + +  T            KLEN   +H S +  Y   +   S    
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 214 PIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGG-AQNKGEFSR--LDYQAR 270
           P    +     +            SH G       + L +    +    F    LD    
Sbjct: 466 PP---YLDQYFY------------SHIG-------HHLKNIEHPERMTLFRMVFLD---- 499

Query: 271 PTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRT 330
                   F++L  K+    H     +  G  S  N     K  +  I    P +     
Sbjct: 500 --------FRFLEQKI---RHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 331 AFTIGYGLPLKDFLFELEGN----RFLNITFGSPMNE 363
           A        + DFL ++E N    ++ ++   + M E
Sbjct: 547 A--------ILDFLPKIEENLICSKYTDLLRIALMAE 575

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00