Citrus Sinensis ID: 007143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------
Protein Sequence
MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccEEEEEccccccEEEEEcccccccccccccHHHHHccccEEEEcccEEEEEEEEcHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEcccEEEccccHHHHHHHHHHHHHccccccccccccccccccEEccccEEEcccEEEccccEEcccEEEccccEEccccEEcccEEccccEEccccEEEccEEccccEEccccEEEcEEEEcccEEccccEEccccEEccccEEccccEEccccEEcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccHHcccccccccccHHHHHHHcccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHcccccEEEEEEcccccEEEccccccccccccHccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEccEEEcccHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccEEEEEEccccEEEEEEEcccccccEEcccHHHHcccccEEEEcccccccEEEcccHHHHHcccccccHccHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEcccEEEcccEEEcccEEEcccEEEccccEEcccEEEEcEEEcccEEEcccEEEEcEEEEccEEEcccEEEEEEEEEccEEEcccEEEcccEEEEccEEEcccEEEccccEEEEcccccccccccccccccccccccccccccccccccHHHcccccccccccccccEEEEEccccccHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHcHEEEEEHHHHHHHcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGAQKKRAAAAAAAARvsedpddlarQPLQAILLAdsfttkfrpitlerpkvllplvnvpmINYTLAWLEAAGVAEVFVFCCAHSKQVIDYlensewfsqpnftvktieshniISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKkskpspithqsrlgtdelfmaidpntkqllyyedkadhskgticldkmllaenpsislhndkqdcyidicspevlslftdnfdyqHLRRHFVKGLllddimgykiFTHEIHSSYAaridnyrsydivskdiiqrwtypyvpdvkfcgnraTKLERRGMYRALEIEqsrsaqvgsFTVIGygtkigsnskisdsvigegctigsnvliegsyiwdnviiedgcelrhVIVCDGVIMKAGAVLKPGVVLSFKVVIgerfvvpahskvsllqqptvhdsdeeleyadnssgtvefsctadqsngemtsesseahkpklgtggvGYIWSICeggqeeewrhsvapipedkltelseamdddqelVTQDRtalstsgelisdsnasegddnedskddsvYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRlegfflpnc
Flexible Loop (DISEMBL)
MGAQKKRAAAAAAaarvsedpddlARQPLQAILLadsfttkfrpitlerpkvllplvNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQehkerkkkdnnAVMTMiikkskpspithqSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQrwtypyvpdvkfcGNRATKLERRGMYRALeieqsrsaqvgsFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVpahskvsllqqptvhdsdEELEYADNSSGTVEFSCTADQSNGEMtsesseahkpklgtgGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDrtalstsgelisdsnasegddnedskDDSVYFEKEVEATFLraveenvkvdHVILEVNSLRGSLDFTCSLLMRLegfflpnc
Low Complexity Region (SEG)
MGAQKKRaaaaaaaaRVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Disordered region (IsUnstruct)
****************************LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ************************************TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV**************************************************GTGGVGYIWSICEGGQE**W**********************************************************VYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFL***
Disordered Region (DISOPRED)
*****************************QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK*********LGTDELFMAIDPNTKQLLYYEDKADH*KGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQP**************************************AHKPKLGTGGVGYIWSIC*******************************************************************YFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Disordered Region (DISEMBL)
***********************LARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQAL*********DNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSD************VEFSCTA***************KPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISD***************SVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Disordered Region (DISPRO)
*************************RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKP*******RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQ*********************************TSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMD**********************************KDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFLPNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	616	2.2.26 [Sep-21-2011]
Q54RF3	707	Translation initiation fa	yes	no	0.659	0.574	0.430	3e-97
P56287	678	Probable translation init	yes	no	0.850	0.772	0.334	1e-95
P87163	732	Translation initiation fa	N/A	no	0.926	0.780	0.336	9e-94
P47823	721	Translation initiation fa	yes	no	0.889	0.760	0.339	2e-91
Q8CHW4	717	Translation initiation fa	yes	no	0.883	0.758	0.340	1e-88
Q64350	716	Translation initiation fa	yes	no	0.889	0.765	0.335	2e-87
Q13144	721	Translation initiation fa	yes	no	0.730	0.624	0.369	1e-82
P32501	712	Translation initiation fa	yes	no	0.884	0.765	0.336	4e-80
P56288	458	Probable translation init	no	no	0.620	0.834	0.266	4e-24
Q54FQ8	440	Translation initiation fa	no	no	0.592	0.829	0.223	3e-14

>sp|Q54RF3|EI2BE_DICDI Translation initiation factor eIF-2B subunit epsilon OS=Dictyostelium discoideum GN=eif2b5 PE=3 SV=1

 Score =  356 bits (914), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/411 (43%), Positives = 267/411 (64%), Gaps = 5/411 (1%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           LQA++L DSF  KF PITLE+P+ LLPLVN+P+++YTL +L A+GV ++FVFCCAH+ Q+
Sbjct: 25  LQAVVLGDSFDRKFAPITLEKPRTLLPLVNIPLLDYTLEFLAASGVQQIFVFCCAHASQI 84

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
            +Y+++S W   P   V  +   N  + GDALR +Y+  VI  DF+LISGD VSNM L +
Sbjct: 85  KEYIQSSRWHDLPGVQVICMTGSNCRTTGDALRGVYDAQVIQSDFILISGDVVSNMNLQK 144

Query: 149 ALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADH 208
           ALQ HK+R++ D N +MTM+ K++     TH++R   D+  +  + +T Q++ Y++    
Sbjct: 145 ALQIHKDRRELDKNNIMTMVYKQASS---THRTRSKQDDTVIWCNRDTMQVVCYDNSPSK 201

Query: 209 SKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268
            K +I ++  L  ++PSI +  D  DC+IDICSPEVL+LF DNFD+  +R+ F+  +L  
Sbjct: 202 KKSSISVE--LFQKHPSIQMRYDLIDCHIDICSPEVLALFNDNFDFADIRKDFIHDILTS 259

Query: 269 DIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGM 328
           D++ YK+  + +   YAAR+ + R+Y  VSKDII RWT+P VPD  F  N +  L R+ +
Sbjct: 260 DLLDYKLSAYVLQGEYAARVKDLRTYHSVSKDIIHRWTFPMVPDNNFMCNSSYSLSRQMI 319

Query: 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII 388
           Y+   ++      +   TVIG  T+IG+ S +S S IG  C IG NV I GSYIWD+V I
Sbjct: 320 YKEKNVKLLGDCLISDETVIGTQTEIGAGSIVSHSTIGRNCIIGKNVKINGSYIWDDVTI 379

Query: 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439
           +D   + H I+C+G I+K+ +++  G ++ F V IG+   +   SK+++ Q
Sbjct: 380 QDNAIIDHSIICNGSIIKSSSIIGRGSIIGFNVYIGQSKTLEPFSKITMAQ 430

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)

>sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif225 PE=1 SV=1

 Score =  350 bits (899), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 327/583 (56%), Gaps = 59/583 (10%)

Query: 26  RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS 85
           +  LQAI+L+DS+  +FRP+TL++P+ LLPL N P+I YT  +L  AGV EV+VFCCAH+
Sbjct: 15  KHALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAHA 74

Query: 86  KQVIDYLENSEW-FSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNM 144
            Q+ +Y+E S+W      F+V TI S   +S GDALR +  + +I  DF+L+SGD VSN+
Sbjct: 75  GQIREYIEKSKWNLPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGDVVSNV 134

Query: 145 LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYED 204
            L + L+EH++R++ D NA+MTM+++++ P    H++R  T+     ID  T Q ++Y+ 
Sbjct: 135 PLNEVLKEHRKRREDDKNAIMTMVVREASP---FHRTRARTESSVFVIDKKTSQCVHYQA 191

Query: 205 KADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264
             +  K  + +D  +  E+  + + ND  DC IDICS +V +LFT+NFDYQ +R+ FV G
Sbjct: 192 N-ERGKHYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFDYQDIRKDFVYG 250

Query: 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLE 324
           +L  D++G KI  H    +YAAR+ + ++YD +SKD++ RW YP+VPD     N+    +
Sbjct: 251 VLTSDLLGKKIHCHVAKENYAARVRSLQTYDAISKDVLSRWVYPFVPDSNLL-NQTFSYQ 309

Query: 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD 384
           R  +Y+  ++  +RS  + + T+IG  TK+G  S +++++IG  CTIGSN  I+ +++W+
Sbjct: 310 RHQIYKEEDVVLARSCIIKARTLIGAYTKVGDASVVANTIIGRNCTIGSNCSIDSAFLWE 369

Query: 385 NVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVH 444
           +V+I D C +   I+ + V +     ++ G +++  VVIG+  ++  + +++  +     
Sbjct: 370 DVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKNKRLTTFES---- 425

Query: 445 DSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKL-GTGGVGYIWSICEGGQEE 503
                     +S GT+                    + P L G GG G           +
Sbjct: 426 ----------HSQGTL--------------------NDPSLVGIGGRG-----------Q 444

Query: 504 EWRHSVAPIPEDKLTELSEAMDDDQEL------VTQDRTALSTSGELISDSNASEGDDNE 557
           E+        E +  E S  ++   EL       ++  ++     E I  S   +  +  
Sbjct: 445 EYHAEEDSDDEGEFMEASGLIESTNELHLSDSESSETSSSSEEDMEFIPFSARRDSANTI 504

Query: 558 DSKD-DSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLD 599
           +S+D D   F KE + +  RA EEN ++D   LE+N+LR +++
Sbjct: 505 NSEDFDEGDFNKEAQQSLERAFEENHQIDIAALELNTLRMAMN 547

Subunit of the guanine nucleotide exchange factor for eIF-2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P87163|EI2BE_CANAL Translation initiation factor eIF-2B subunit epsilon OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GCD6 PE=3 SV=2

 Score =  345 bits (884), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 212/630 (33%), Positives = 342/630 (54%), Gaps = 59/630 (9%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           M  + K+ AA  + ++ S+D   L  +  QAI+L DSF T+F P+T   P+ LLPL NVP
Sbjct: 1   MAPKSKKQAATQSKSKKSKD---LVDERFQAIVLTDSFETRFMPLTAVHPRCLLPLANVP 57

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPN-FTVKTIESHNIISAGDA 119
           +I YTL +L  AGV EV++ C AH+ Q+ +Y+ENS+W    + F+V TI S    S GD 
Sbjct: 58  LIEYTLEFLANAGVNEVYLMCSAHADQIQEYIENSKWMGDNSPFSVTTIMSIESRSVGDT 117

Query: 120 LRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH 179
           +R +  + +I GDF+L+SGD V+NM  ++ALQ HK++K +D + + TM++ ++ P    H
Sbjct: 118 MRDLDNRGLIAGDFLLVSGDVVTNMDFSKALQFHKQKKAQDKDHIATMVLNQASP---LH 174

Query: 180 QSRLGTDELFMAIDPNTKQLLYYED--KADHSKGTICLDKMLLAE-NPSISLHNDKQDCY 236
           ++R   D     +D  T + ++Y+        K  I +D  LL +    + + ND  DC+
Sbjct: 175 RTRSQIDPAAFVLDKETNRCIFYQSIPPVSGKKTCISIDPELLEDFQGELQVRNDLIDCH 234

Query: 237 IDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTH--EIHSSYAARIDNYRSY 294
           +DICSP V  +F +NFDYQ+LR  F+KG+L  D++   I+ +  +  S YAAR++++ +Y
Sbjct: 235 VDICSPHVPQIFQENFDYQYLRSDFLKGVLTSDLLKKTIYAYISKDSSEYAARVESWSTY 294

Query: 295 DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKI 354
           D +S+DI+ RW YP VPD       +   E   +Y+  +I  ++S ++G+ T IG  + +
Sbjct: 295 DAISQDILARWCYPLVPDSNLVEGNSYSYELNNIYKEDKIILAQSCKIGTSTSIGRNSSV 354

Query: 355 GSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG 414
           G  ++I +SVIG  CTIG NV+IE SYIWDN +I+D   L   IV     +     L PG
Sbjct: 355 GEGTQIKNSVIGRNCTIGKNVVIENSYIWDNAVIKDNSVLNRSIVAADAQIGNNVTLSPG 414

Query: 415 VVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMT 474
            V+ F V+IG+  V+P + K+  ++ P V ++              EF    D+SN E  
Sbjct: 415 SVIGFNVIIGDDKVIPHNVKI--VETPIVTEN--------------EFGDFDDESNSEDE 458

Query: 475 SESSEAHK-PKL--------GTGGVGYIW-SICEGGQEEE-------------WRHSVAP 511
           +E  + +  P L        G  G G+ + S  E G E++             ++ +   
Sbjct: 459 NEYEDGNAVPVLAVKDVELVGETGKGFAYESEIESGDEDDEEFVGNGTYSGIIYQMNSLN 518

Query: 512 IPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVE 571
           + +D +  +S     ++++         +   +ISD+    G    D  ++   F  E  
Sbjct: 519 VSDDSIASVS-----NKKVKKHSHRRRLSMNSMISDNG---GAFESDEGEEEEDFGVEGL 570

Query: 572 ATFLRAVEENVKVDHVILEVNSLRGSLDFT 601
           AT  RA+E N  +D  +LE+N+LR S++ T
Sbjct: 571 ATVTRAIENNHDIDTALLELNTLRMSMNVT 600

Subunit of the guanine nucleotide exchange factor for eIF-2.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|P47823|EI2BE_RABIT Translation initiation factor eIF-2B subunit epsilon OS=Oryctolagus cuniculus GN=EIF2B5 PE=1 SV=1

 Score =  337 bits (864), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 316/587 (53%), Gaps = 39/587 (6%)

Query: 28  PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
           PLQA+L+ADSF  +F PI+ ++P+VLLPL NV +I+YTL +L A GV E FVFCC  + Q
Sbjct: 42  PLQAVLVADSFNRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 101

Query: 88  VIDYLENSEWFSQPNF-TVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL 146
           + ++L+ S+W    +   V+ I S    S GD LR +  + ++  DF+L+ GD VSN+ +
Sbjct: 102 IKEHLQKSKWCRPTSLNVVRIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVVSNINV 161

Query: 147 TQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDK 205
           T+AL+EH+ R+K + N +VMTMI K+S PS   H +R   D + +A+D  T ++L+++  
Sbjct: 162 TRALEEHRLRRKLEKNVSVMTMIFKESSPS---HPTRCHEDNVVVAVDSATNRILHFQKT 218

Query: 206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265
               + +  L  +       + +  D  DC+I ICSP+V  LFTDNFDYQ  R  FV+GL
Sbjct: 219 QGLRRFSFPL-SLFQGSGAGVEIRYDLLDCHISICSPQVAQLFTDNFDYQ-TRDDFVRGL 276

Query: 266 LLDD-IMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKL- 323
           L+++ I+G +I  H     Y AR+ N   Y  V  D+I+RW YP  P+  F  + A    
Sbjct: 277 LVNEEILGNQIHMHVTTREYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTAQSCT 336

Query: 324 -ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYI 382
             R  +YR  E+     + +    ++G GT IGSN  I++SVIG GC IG NV+++ +Y+
Sbjct: 337 HSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSNCSITNSVIGPGCCIGDNVVLDRAYL 396

Query: 383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442
           W  V +  G ++   ++CD   +K    LKP  VL+ +VV+G    +P  S +S L  P 
Sbjct: 397 WKGVQVASGAQIHQSLLCDHAEVKEQVTLKPHCVLTSQVVVGPNITLPEGSVIS-LHPPD 455

Query: 443 VHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKP-KLGTGGVGYIWSICEGGQ 501
             + +++ +++D+S             N        + + P ++G  G GY+W   +   
Sbjct: 456 AEEDEDDGQFSDDSG-----------VNQAKEKAKLKGYNPAEVGVAGKGYLWKAADMNT 504

Query: 502 EEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKD 561
           E+E              EL +++     L   +     T  E   DS   +        D
Sbjct: 505 EKE-------------EELRQSL---WGLTINEEEESETESERSMDSEELDSRAGSPQLD 548

Query: 562 DSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRL 608
           D   F+ EV  T  R  EE++  D++ILE+NSL+ + + +   +M++
Sbjct: 549 DIKVFQNEVLGTLQRGKEESISCDNLILEINSLKYAYNISLKEVMQV 595

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q8CHW4|EI2BE_MOUSE Translation initiation factor eIF-2B subunit epsilon OS=Mus musculus GN=Eif2b5 PE=1 SV=1

 Score =  328 bits (840), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 325/591 (54%), Gaps = 47/591 (7%)

Query: 28  PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
           PLQA+L+ADSF  +F PI+ ++P+VLLPL NV +I+YTL +L A GV E FVFCC  + Q
Sbjct: 38  PLQAVLVADSFNRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 97

Query: 88  VIDYLENSEWF--SQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNML 145
           + ++L+ S+W   + PN  V+ I S    S GD LR +  + ++  DF+LI GD +SN+ 
Sbjct: 98  IKEHLQKSKWCHPTSPN-VVRIITSELYRSLGDVLRDVDAKALVRSDFLLIYGDVISNIN 156

Query: 146 LTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYED 204
           + +AL+EH+ R+K + N +VMTM+ K+S PS   H +R   D + MA+D  T ++L+++ 
Sbjct: 157 ICRALEEHRLRRKLEKNVSVMTMVFKESSPS---HPTRCHEDNVVMAVDSATNRVLHFQK 213

Query: 205 KADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264
                + +  L  +       + +  D  DC+I ICSP+V  LFTDNFDYQ  R  FV+G
Sbjct: 214 TQGLRRFSFPL-SLFQGSGDGVEIRYDLLDCHISICSPQVAQLFTDNFDYQ-TRDDFVRG 271

Query: 265 LLL-DDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGN--RAT 321
           +L+ ++++G +I  H     Y AR+ N   Y  V  D+I+RW YP  P+V F  +  ++ 
Sbjct: 272 ILMNEEVLGNQIHLHVTTREYGARVSNLHMYSAVCADVIRRWVYPLTPEVNFTDSTTQSY 331

Query: 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSY 381
              R  +YR  E+     + +    ++G GT IGSN  I++SVIG  C IG NV+++ +Y
Sbjct: 332 THSRHNIYRGPEVSLGHGSVLEENVLLGAGTVIGSNCSITNSVIGPNCHIGDNVVLDQAY 391

Query: 382 IWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQP 441
           +W  V +  G ++   ++CD   +K    LKP  VL+ +VV+G    +P  S +S L  P
Sbjct: 392 LWQGVRVAAGAQIHQSLLCDRAEVKERVKLKPYCVLTSQVVVGPDITLPEGSVIS-LHPP 450

Query: 442 TVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKP-KLGTGGVGYIWSICEG- 499
              + +++ +++D+S         ADQ   E      + + P ++G  G GY+W   EG 
Sbjct: 451 DAEEDEDDGQFSDDSG--------ADQ---EKEKVKLKGYNPAEVGLEGQGYLWK-AEGV 498

Query: 500 --GQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNE 557
              ++EE R S+  +           M   +E    +        EL S + + + DD  
Sbjct: 499 NSKEDEELRQSLWGL-----------MIKTEEESETESEGSVDPEELDSRAGSPQLDDIR 547

Query: 558 DSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRL 608
                   F+ EV  T  R  EEN+  ++++LE+NSL+ + + +   +M++
Sbjct: 548 -------VFQNEVLGTLQRGREENISCENLVLEINSLKHAYNISLKEVMQV 591

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Mus musculus (taxid: 10090)

>sp|Q64350|EI2BE_RAT Translation initiation factor eIF-2B subunit epsilon OS=Rattus norvegicus GN=Eif2b5 PE=1 SV=2

 Score =  323 bits (828), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 318/587 (54%), Gaps = 39/587 (6%)

Query: 28  PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
           PLQA+L+ADSF  +F PI+ ++P+VLLPL NV +I+YTL +L A GV E FVFCC  + Q
Sbjct: 37  PLQAVLVADSFDRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 96

Query: 88  VIDYLENSEWFSQPNF-TVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL 146
           + ++L+ S+W    +   V+ I S    S GD LR +  + ++  DF+LI GD VSN+ +
Sbjct: 97  IKEHLQKSKWCHPTSLNVVRIITSDLYRSLGDVLRDVDAKALVRSDFLLIYGDVVSNINI 156

Query: 147 TQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDK 205
           ++AL+EH+ R+K + N +VMTM+ K+S PS   H +R   D + +A+D  T ++L+++  
Sbjct: 157 SKALEEHRLRRKLEKNVSVMTMVFKESSPS---HPTRCHEDNVVLAVDSTTNRILHFQKT 213

Query: 206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265
                 +  L  +       + +  D  DC+I ICSP+V  LFTDNFDYQ  R  FV+GL
Sbjct: 214 QGLRHFSFPLG-LFQGSLDGVEIRYDLLDCHISICSPQVAQLFTDNFDYQ-TRDDFVRGL 271

Query: 266 LLDD-IMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFC--GNRATK 322
           L+++ I+G +I  H     Y AR+ N   Y  V  D+I+RW YP  P+V F     ++  
Sbjct: 272 LVNEEILGNQIHLHVTSREYGARVSNLHMYSAVCADVIRRWVYPLTPEVNFTDSSTQSYT 331

Query: 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYI 382
             R  +YR  E+     + +    ++G GT +GSN  I++SVIG  C IG NV+++ +Y+
Sbjct: 332 HSRHNIYRGPEVSLGHGSVLEENVLLGAGTVVGSNCSITNSVIGPNCHIGDNVVLDQAYL 391

Query: 383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442
           W  V +  G ++   ++CD   +K   +LKP  VL+ +VV+G   ++P  S +S L  P 
Sbjct: 392 WQGVRVAAGAQIHQSLLCDRAEVKERVILKPHCVLTSQVVVGPDIILPEGSVIS-LHPPD 450

Query: 443 VHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKP-KLGTGGVGYIWSICEGGQ 501
             + +++ +++D+S         ADQ   E      + + P ++G  G GY+W       
Sbjct: 451 AEEDEDDGQFSDDSG--------ADQ---EKEKVKLKGYNPAEVGPEGQGYLW------- 492

Query: 502 EEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNEDSKD 561
                     + E +  EL +++     L+        T  E   D    +        D
Sbjct: 493 ------KAEDVDEKEDEELRQSL---WGLMINMEEESETESERSVDPEELDSRAGSPQLD 543

Query: 562 DSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRL 608
           D   F+ EV  T  R  EEN+  D+++LE+NSL+ + + +   +M++
Sbjct: 544 DIRVFQNEVLGTLQRGREENISCDNLVLEINSLKYAYNISLKEVMQV 590

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q13144|EI2BE_HUMAN Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=1 SV=3

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/473 (36%), Positives = 271/473 (57%), Gaps = 23/473 (4%)

Query: 28  PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
           PLQA+L+ADSF  +F PI+ ++P+VLLPL NV +I+YTL +L A GV E FVFCC  + Q
Sbjct: 42  PLQAVLVADSFDRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 101

Query: 88  VIDYLENSEWFSQPNF-TVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL 146
           + ++L  S+W    +   V+ I S    S GD LR +  + ++  DF+L+ GD +SN+ +
Sbjct: 102 IKEHLLKSKWCRPTSLNVVRIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINI 161

Query: 147 TQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDK 205
           T+AL+EH+ R+K + N +VMTMI K+S PS   H +R   D + +A+D  T ++L+++  
Sbjct: 162 TRALEEHRLRRKLEKNVSVMTMIFKESSPS---HPTRCHEDNVVVAVDSTTNRVLHFQKT 218

Query: 206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265
               +    L  +    +  + +  D  DC+I ICSP+V  LFTDNFDYQ  R  FV+GL
Sbjct: 219 QGLRRFAFPLS-LFQGSSDGVEVRYDLLDCHISICSPQVAQLFTDNFDYQ-TRDDFVRGL 276

Query: 266 LLDD-IMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGN--RATK 322
           L+++ I+G +I  H     Y AR+ N   Y  V  D+I+RW YP  P+  F  +  ++  
Sbjct: 277 LVNEEILGNQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCT 336

Query: 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYI 382
             R  +YR  E+     + +    ++G GT IGSN  I++SVIG GC IG NV+++ +Y+
Sbjct: 337 HSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYL 396

Query: 383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442
           W  V +  G ++   ++CD   +K    LKP  VL+ +VV+G    +P  S +SL   P 
Sbjct: 397 WQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISL--HPP 454

Query: 443 VHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKP-KLGTGGVGYIW 494
             + DE+     + SG       ADQ   ++     + + P ++G  G GY+W
Sbjct: 455 DAEEDEDDGEFSDDSG-------ADQEKDKV---KMKGYNPAEVGAAGKGYLW 497

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Homo sapiens (taxid: 9606)

>sp|P32501|EI2BE_YEAST Translation initiation factor eIF-2B subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD6 PE=1 SV=1

 Score =  299 bits (766), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 308/582 (52%), Gaps = 37/582 (6%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           LQA++L DS+ T+F P+T  +P+ LLPL NVP+I YTL +L  AGV EVF+ C +H+ Q+
Sbjct: 27  LQAVVLTDSYETRFMPLTAVKPRCLLPLANVPLIEYTLEFLAKAGVHEVFLICSSHANQI 86

Query: 89  IDYLENSEW-FSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLT 147
            DY+ENS+W      F + TI S      GD +R +  + +I GDF+L+SGD ++N+  +
Sbjct: 87  NDYIENSKWNLPWSPFKITTIMSPEARCTGDVMRDLDNRGIITGDFILVSGDVLTNIDFS 146

Query: 148 QALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYED--- 204
           + L+ HK+   +D + + TM + K+   P T       +     +D +T + +YY+D   
Sbjct: 147 KMLEFHKKMHLQDKDHISTMCLSKASTYPKTRT----IEPAAFVLDKSTSRCIYYQDLPL 202

Query: 205 KADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264
            +   K +I +D  LL       + ND  DC IDIC+  V  +F +NFDYQ LR  FVKG
Sbjct: 203 PSSREKTSIQIDPELLDNVDEFVIRNDLIDCRIDICTSHVPLIFQENFDYQSLRTDFVKG 262

Query: 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLE 324
           ++  DI+G  I+ + +   YA R++++++YD +S+D + RW YP V D     ++    E
Sbjct: 263 VISSDILGKHIYAY-LTDEYAVRVESWQTYDTISQDFLGRWCYPLVLDSNIQDDQTYSYE 321

Query: 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD 384
            R +Y+  ++  ++S ++G  T IG GTKIG  +KI +SVIG  C IG N+ I+ S+IWD
Sbjct: 322 SRHIYKEKDVVLAQSCKIGKCTAIGSGTKIGEGTKIENSVIGRNCQIGENIRIKNSFIWD 381

Query: 385 NVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVH 444
           + II +   + H ++     + +   L  G ++ F V I +   +  ++K+S        
Sbjct: 382 DCIIGNNSIIDHSLIASNATLGSNVRLNDGCIIGFNVKIDDNMDLDRNTKISA------- 434

Query: 445 DSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGYIWSICEGGQEEE 504
                L+ A +     E +   DQ   + T   S      +G  GVGYI+   E    ++
Sbjct: 435 ---SPLKNAGSRMYDNESNEQFDQDLDDQTLAVS-----IVGDKGVGYIY---ESEVSDD 483

Query: 505 WRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALS----TSGELISDSNASEGDDNE-DS 559
              S     E  +  LS  +D   EL   D +  S    T        N+   D  E DS
Sbjct: 484 EDSSTEACKE--INTLSNQLD---ELYLSDDSISSATKKTKKRRTMSVNSIYTDREEIDS 538

Query: 560 KDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFT 601
           + +   FEKE  AT  RA+E N  +D  +LE+N+LR S++ T
Sbjct: 539 EFEDEDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVT 580

Acts as a catalytic component of the translation initiation factor 2B (eIF2-B or GCD complex), which catalyzes the exchange of eukaryotic initiation factor 2 (eIF-2)-bound GDP for GTP and is regulated by phosphorylated eIF-2. It activates the synthesis of GCN4 in yeast under amino acid starvation conditions by suppressing the inhibitory effects of multiple AUG codons present in the leader of GCN4 mRNA. It may promote either repression or activation of GCN4 expression depending on amino acid availability. GCD6 and GCD7 repress GCN4 expression at the translational level by ensuring that ribosomes which have translated UORF1 will reinitiate at UORF2, -3, or -4 and thus fail to reach the GCN4 start site.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P56288|EI2BG_SCHPO Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif223 PE=1 SV=2

 Score =  113 bits (283), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 192/428 (44%), Gaps = 46/428 (10%)

Query: 29  LQAILLADSFTTKFRPITLE--RPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSK 86
            QA++ A  F     P+T     PK LLP+ N PM++Y L WLEAAG     + C   ++
Sbjct: 39  FQAVVFA-GFGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEEAE 97

Query: 87  QVIDYLENSEWFSQPNFTVKTIESHNII----SAGDALRLIYEQNVIHGDFVLISGDTVS 142
             I+    S +       V   E+  I+    S+ DALR +   ++I  DFV +S D++ 
Sbjct: 98  AHINAWLRSGYEGHMRIHV---EAPTILDDSKSSADALRAV--SHLIKNDFVCLSCDSIV 152

Query: 143 NMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYY 202
            +     L    ++ + DN + + +     K   IT QS+    +  + I+  T +LLY 
Sbjct: 153 GLPPIYGL----DKFRLDNPSALAVYSPVLKYEHITSQSKEIDAKQLIGIEEKTSRLLYA 208

Query: 203 EDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV 262
           +  AD           LL ++P ++L+ +  D +I +    V+ L  +      +R   +
Sbjct: 209 KSSAD-VGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVIDLIREKESISSIRGDLI 267

Query: 263 KGLLLDDIMGYKIFT-HEIHSSYAARIDNYRSYD------------IVSKDII---QRWT 306
             L+       K FT  E    + +  +N  +YD            +++KD I   +   
Sbjct: 268 PYLV--KCQYQKSFTVRENIQRFLSSPNNIDNYDGGLSSQEIKINALIAKDGIICSRANN 325

Query: 307 YPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIG 366
            P   ++  C  + T  +R      +++  S  A VG+  ++  GT I  NS I  S+IG
Sbjct: 326 LPNYFELNKCIAKLTPEQR-----LVDVTVSERALVGADCMVNEGTTIKDNSNIKKSIIG 380

Query: 367 EGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP---GV---VLSFK 420
           + C IG  V++  S + DN+++EDG  L   IV  G  + A + L+    GV   V + +
Sbjct: 381 KNCVIGKGVVVSNSILMDNIVVEDGVRLESCIVASGAQIGAKSKLRECEIGVDHRVEAGR 440

Query: 421 VVIGERFV 428
           +  GER V
Sbjct: 441 IARGERLV 448

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 190/452 (42%), Gaps = 87/452 (19%)

Query: 24  LARQPLQAILLAD---SFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGV---AEV 77
           + +   Q ++LA    S  +K  PI    P  LLP+ N P+I+Y L +LE AG    +E 
Sbjct: 1   MTQTQFQVVILATDKASGNSKLEPIDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEP 60

Query: 78  FVFCCAHSKQ--VIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVL 135
            +     + Q  +  Y+  SE + +    V+     + ++  + L  I ++  +    VL
Sbjct: 61  VIIVVNETSQEKIKQYV--SEIY-KGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVL 117

Query: 136 ISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPS----------PITHQSRLGT 185
            +   + +  + Q    H++ +     + +T+++K   P             T Q +L T
Sbjct: 118 NANLVLEDTFIRQMADLHRKEE-----SSLTVLLKPPTPKVEQKGKGATETSTKQDKLFT 172

Query: 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245
           D  ++A++  +++++  E  A   +  +  +K LL   P+++++ + QD  + I S  VL
Sbjct: 173 D--YIALEEKSQKIVMMEP-ATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVL 229

Query: 246 SLFTDNFDYQH-----LRRHFVKGLL-----------------------LDDIMG----- 272
            L  ++   ++     +++H +  LL                       L   M      
Sbjct: 230 DLIIEDQKEKYPLFFDIKKHLIPYLLSCQIPNIKRKRALPASAFNQNQTLSQTMSSTTSP 289

Query: 273 --------------YKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCG 317
                          K F H +    Y   ++  ++Y  +++DI +        D+++  
Sbjct: 290 FDQFSELNAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKG-------DLQYLP 342

Query: 318 NRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI 377
           N   K E+               QVG   VIG  T +G+   +  S+IG+ C IG  V I
Sbjct: 343 NEP-KSEKNFFIDP--TANVTITQVGPQCVIGTSTTLGAKCSVKFSIIGKHCKIGDGVRI 399

Query: 378 EGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409
           E S I D+VIIED C +   I+C+ V +K+G+
Sbjct: 400 ENSIIMDHVIIEDRCVINSSIICNDVYIKSGS 431

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
297744835	730	unnamed protein product [Vitis vinifera]	0.959	0.809	0.772	0.0
224131394	718	predicted protein [Populus trichocarpa]	0.957	0.821	0.748	0.0
356505908	724	PREDICTED: probable translation initiati	0.952	0.810	0.737	0.0
356505910	711	PREDICTED: probable translation initiati	0.936	0.811	0.736	0.0
356573048	725	PREDICTED: probable translation initiati	0.952	0.809	0.728	0.0
356573050	716	PREDICTED: probable translation initiati	0.930	0.800	0.722	0.0
15226869	730	translation initiation factor eIF-2B eps	0.943	0.795	0.680	0.0
297823289	726	eIF4-gamma/eIF5/eIF2-epsilon domain-cont	0.941	0.798	0.682	0.0
307136048	636	eIF4-gamma/eIF5/eIF2-epsilon domain-cont	0.879	0.852	0.665	0.0
449442881	635	PREDICTED: translation initiation factor	0.878	0.851	0.658	0.0

>gi|297744835|emb|CBI38103.3| unnamed protein product [Vitis vinifera]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/599 (77%), Positives = 520/599 (86%), Gaps = 8/599 (1%)

Query: 13  AAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA 72
            + RVSED ++L R PLQAILLADSF  KFRPITLERPKVLLPLVNVPMI+YTLAWLE+A
Sbjct: 6   GSTRVSEDAEELVRVPLQAILLADSFAQKFRPITLERPKVLLPLVNVPMIDYTLAWLESA 65

Query: 73  GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD 132
           G+ EVFVFCCAHSKQVI+YLENS W S P+F V TIESHN +SAGDALRLIYE++VIHGD
Sbjct: 66  GIEEVFVFCCAHSKQVINYLENSHWVSLPHFEVTTIESHNSVSAGDALRLIYERHVIHGD 125

Query: 133 FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAI 192
           FVLI+GDTVSNM LTQALQEHK+R+KKDNNAVMTM+IK+SKPSPITHQSRLGTDELFMAI
Sbjct: 126 FVLITGDTVSNMSLTQALQEHKDRRKKDNNAVMTMVIKRSKPSPITHQSRLGTDELFMAI 185

Query: 193 DPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF 252
           DP+TKQLLYYEDKADH KGT+ L+KMLLA+NPSISLHNDKQDCYIDICSPEVLS+FTDNF
Sbjct: 186 DPHTKQLLYYEDKADHLKGTLSLEKMLLADNPSISLHNDKQDCYIDICSPEVLSIFTDNF 245

Query: 253 DYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPD 312
           DYQHLRRHF+KGLL+DDIMGYKIFTHEIHS+YAARIDN+RSYD +SKDIIQRWTYP VPD
Sbjct: 246 DYQHLRRHFIKGLLVDDIMGYKIFTHEIHSNYAARIDNFRSYDTISKDIIQRWTYPLVPD 305

Query: 313 VKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIG 372
           V+F GN A KLER+GMYRAL+I QSRSAQ+G F++IG GT IG N+KIS+SVIGE CTIG
Sbjct: 306 VQFLGNCAAKLERQGMYRALDIGQSRSAQIGPFSIIGNGTNIGDNTKISNSVIGERCTIG 365

Query: 373 SNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432
           SNV IEGSYIWDNV IEDGC L+H IVC+ VIMK+GAVL+PGV+LSFKVVIG+ FVVPA+
Sbjct: 366 SNVSIEGSYIWDNVTIEDGCVLKHAIVCNDVIMKSGAVLEPGVILSFKVVIGQEFVVPAY 425

Query: 433 SKVSLLQQPTVHDSDEELEYADNSSGTVE---FSCTADQSNGEMTSESSEAH---KPKLG 486
           SKVSLLQQPT  DSDEELEYAD++SG  E    + T D+ NG +T +  E       ++G
Sbjct: 426 SKVSLLQQPTKQDSDEELEYADHNSGVEEIPSITSTVDKLNGVLTCKLPETEAWSTSEVG 485

Query: 487 TGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELIS 546
           +GGVGYIWSICEGG EEEWRHSVAP P DKLTE+ +A DDD EL TQ    L  SGEL+ 
Sbjct: 486 SGGVGYIWSICEGGHEEEWRHSVAPTPADKLTEVMQATDDDLELTTQGSNVLLPSGELVP 545

Query: 547 DSNA--SEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCS 603
           DSN+  SE DDNEDS+DDSVYFEKEVEATFLRAV ENVK DHVILEVNSLR S + T +
Sbjct: 546 DSNSNISEDDDNEDSRDDSVYFEKEVEATFLRAVHENVKEDHVILEVNSLRLSYNMTSA 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131394|ref|XP_002328528.1| predicted protein [Populus trichocarpa] gi|222838243|gb|EEE76608.1| predicted protein [Populus trichocarpa]

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/605 (74%), Positives = 516/605 (85%), Gaps = 15/605 (2%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           M  Q+K      AAARVSED +DL R PLQAILLADSF TKFRPITLERPKVLLPLVNVP
Sbjct: 1   MPPQRK-----GAAARVSEDTEDLTRHPLQAILLADSFATKFRPITLERPKVLLPLVNVP 55

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MI+YTLAWLE+AGV EVFVFCCAHSKQVI+YLE SEW  QPNF+V TIESHN +SAGDAL
Sbjct: 56  MIDYTLAWLESAGVEEVFVFCCAHSKQVIEYLEKSEWILQPNFSVVTIESHNSVSAGDAL 115

Query: 121 RLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180
           RLIYE+NVI+GDFVLISGDTVSNM LTQ +QEHKER+KKD+NAVMTM+IK+SK SPITHQ
Sbjct: 116 RLIYERNVINGDFVLISGDTVSNMSLTQVIQEHKERRKKDSNAVMTMVIKQSKLSPITHQ 175

Query: 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240
           SRLGTDELF+AIDP TKQLL+YE+K D+ +G I LD  LL +NPSI LHNDKQDCYIDIC
Sbjct: 176 SRLGTDELFLAIDPQTKQLLFYEEKTDNLRGIIPLDNALLGDNPSICLHNDKQDCYIDIC 235

Query: 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300
           S EVLSLFTDNFDYQHLRRHFVKGLL+DDIMGYKIFTHEIHSSYAARIDNYRSYD +SKD
Sbjct: 236 SQEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNYRSYDTISKD 295

Query: 301 IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI 360
           IIQRWTYP+VPDV F GN AT LER GMYRA EIEQSRSA++G FTVIG GT+IG+NS I
Sbjct: 296 IIQRWTYPFVPDVMFSGNSATHLEREGMYRASEIEQSRSARIGPFTVIGKGTRIGNNSNI 355

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
           S+SVIG+GC+IGSNV I GSYIWD+V IEDGC++RH I+CDGV++K+GA L+PGVVLSFK
Sbjct: 356 SNSVIGKGCSIGSNVSITGSYIWDSVTIEDGCDIRHAIICDGVVIKSGAALEPGVVLSFK 415

Query: 421 VVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEA 480
           VVIG++F+VP++SKVSL QQPTV DSDEELEYADNSSGTV+ SC       EM SE+  +
Sbjct: 416 VVIGQQFIVPSYSKVSLYQQPTVEDSDEELEYADNSSGTVD-SCKL----WEMMSETPAS 470

Query: 481 HKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALST 540
              +LG GGVG++WSICEGG EEEWRHSVAPIP DKL E +++++DD E +  D  ALST
Sbjct: 471 ---QLGPGGVGHVWSICEGGHEEEWRHSVAPIPADKLAEATQSLEDDLEFLNLDGNALST 527

Query: 541 SGELISDSNAS--EGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSL 598
           SGEL    N +  E DD EDS+DDS+Y+EKEVEATFLRAV EN+KV  VILE+NSLR S 
Sbjct: 528 SGELKPGRNGTDSEDDDAEDSRDDSIYYEKEVEATFLRAVNENIKVPDVILEMNSLRLSY 587

Query: 599 DFTCS 603
           + T +
Sbjct: 588 NMTSA 592

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505908|ref|XP_003521731.1| PREDICTED: probable translation initiation factor eIF-2B subunit epsilon-like isoform 1 [Glycine max]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/602 (73%), Positives = 503/602 (83%), Gaps = 15/602 (2%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKK      + ARVSEDPD+L R PLQA+LLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQKK------SGARVSEDPDELVRVPLQAVLLADSFTTKFRPITLERPKVLLPLVNVP 54

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL WLE+AGV EVFVFCC+HSKQVI YLE SEW SQPNFTV T+ES N +SAGDAL
Sbjct: 55  MINYTLTWLESAGVEEVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDAL 114

Query: 121 RLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180
           R+IYE+NVIHGDFVLISGDTVSNM LTQAL EHKERKKKD+NAVMTM+IK+SKP+P  HQ
Sbjct: 115 RVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNPAIHQ 174

Query: 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240
           SRLGTDELFMAIDPNTKQLLYYED+AD SKGT+ LDK LLA+NPS+SLH+DKQDCYIDIC
Sbjct: 175 SRLGTDELFMAIDPNTKQLLYYEDRADQSKGTLHLDKSLLADNPSLSLHHDKQDCYIDIC 234

Query: 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300
           SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIF HEIHS YAARIDN+RSYD VSKD
Sbjct: 235 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKD 294

Query: 301 IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI 360
           II RWTYP VPDV   G+ ATKLER+G+YRA EI QS+SA +G FTVIG GTKIG N+KI
Sbjct: 295 IIHRWTYPLVPDVMNFGDTATKLERQGIYRASEISQSQSAVIGPFTVIGSGTKIGHNTKI 354

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
            +SVIGEGC IGSNV+IEG YIWDN+ IEDGC+L+H IVCDGVI+K+GAVL+PGV+LSFK
Sbjct: 355 LNSVIGEGCKIGSNVIIEGCYIWDNISIEDGCKLQHAIVCDGVIIKSGAVLEPGVILSFK 414

Query: 421 VVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEA 480
           VV+G  FVVP +S VSLLQQP   DSDEELEYAD++S         D+S+ E+ S+  E 
Sbjct: 415 VVVGPEFVVPPYSNVSLLQQPIEEDSDEELEYADSTSV---IGSQVDKSDVEIASKVLET 471

Query: 481 H---KPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTA 537
           H     +LG GG G++WS CEG  EEEWRHSVAPIP+DK+ E  + M DD E    D + 
Sbjct: 472 HFSPASELGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKVMEAIKTMKDDLE---NDDSF 528

Query: 538 LSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGS 597
           L  SGEL  +SN S+ DD+EDS+DDS YFEKEVEATFLRAV EN++  H+ILE+NSL+ S
Sbjct: 529 LPPSGELKPNSNYSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLS 588

Query: 598 LD 599
            +
Sbjct: 589 YN 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505910|ref|XP_003521732.1| PREDICTED: probable translation initiation factor eIF-2B subunit epsilon-like isoform 2 [Glycine max]

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/599 (73%), Positives = 498/599 (83%), Gaps = 22/599 (3%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKK      + ARVSEDPD+L R PLQA+LLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQKK------SGARVSEDPDELVRVPLQAVLLADSFTTKFRPITLERPKVLLPLVNVP 54

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL WLE+AGV EVFVFCC+HSKQVI YLE SEW SQPNFTV T+ES N +SAGDAL
Sbjct: 55  MINYTLTWLESAGVEEVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDAL 114

Query: 121 RLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180
           R+IYE+NVIHGDFVLISGDTVSNM LTQAL EHKERKKKD+NAVMTM+IK+SKP+P  HQ
Sbjct: 115 RVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNPAIHQ 174

Query: 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240
           SRLGTDELFMAIDPNTKQLLYYED+AD SKGT+ LDK LLA+NPS+SLH+DKQDCYIDIC
Sbjct: 175 SRLGTDELFMAIDPNTKQLLYYEDRADQSKGTLHLDKSLLADNPSLSLHHDKQDCYIDIC 234

Query: 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300
           SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIF HEIHS YAARIDN+RSYD VSKD
Sbjct: 235 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKD 294

Query: 301 IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI 360
           II RWTYP VPDV   G+ ATKLER+G+YRA EI QS+SA +G FTVIG GTKIG N+KI
Sbjct: 295 IIHRWTYPLVPDVMNFGDTATKLERQGIYRASEISQSQSAVIGPFTVIGSGTKIGHNTKI 354

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
            +SVIGEGC IGSNV+IEG YIWDN+ IEDGC+L+H IVCDGVI+K+GAVL+PGV+LSFK
Sbjct: 355 LNSVIGEGCKIGSNVIIEGCYIWDNISIEDGCKLQHAIVCDGVIIKSGAVLEPGVILSFK 414

Query: 421 VVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEA 480
           VV+G  FVVP +S VSLLQQP   DSDEELEYAD++SG + F  T              +
Sbjct: 415 VVVGPEFVVPPYSNVSLLQQPIEEDSDEELEYADSTSGNLLFLSTL-------------S 461

Query: 481 HKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALST 540
              +LG GG G++WS CEG  EEEWRHSVAPIP+DK+ E  + M DD E    D + L  
Sbjct: 462 FVDQLGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKVMEAIKTMKDDLE---NDDSFLPP 518

Query: 541 SGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLD 599
           SGEL  +SN S+ DD+EDS+DDS YFEKEVEATFLRAV EN++  H+ILE+NSL+ S +
Sbjct: 519 SGELKPNSNYSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLSYN 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573048|ref|XP_003554677.1| PREDICTED: probable translation initiation factor eIF-2B subunit epsilon-like isoform 1 [Glycine max]

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/603 (72%), Positives = 497/603 (82%), Gaps = 16/603 (2%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKKR         VSEDPD+L R PLQAILLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQKKR---------VSEDPDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 51

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL WLE+AGV +VFVFCC+HSKQVI YLE SEW SQPNFTV T+ES N +SAGDAL
Sbjct: 52  MINYTLTWLESAGVEDVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDAL 111

Query: 121 RLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176
           R+IYE+NV    IHGDFVLISGDTVSNM LTQAL EHKERKKKD+NAVMTM+IK+SKP+P
Sbjct: 112 RVIYERNVVCLSIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNP 171

Query: 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCY 236
             HQSRLGTDELFMAIDPNTKQLLYYEDKAD SKG + LDK LL +NPS+SLH+DKQDCY
Sbjct: 172 AIHQSRLGTDELFMAIDPNTKQLLYYEDKADQSKGKLHLDKSLLFDNPSLSLHHDKQDCY 231

Query: 237 IDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDI 296
           IDICSPEVLSLFTDNFDYQHLRRHFVKGLL+DDIMGYKIF HEIHS YAARIDN+R YD 
Sbjct: 232 IDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRGYDT 291

Query: 297 VSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS 356
           VSKDII RWTYP VPDV   GN ATKLER+GMYRA EI Q +SA +G FTVIG  TKIG+
Sbjct: 292 VSKDIIHRWTYPLVPDVMNFGNTATKLERQGMYRASEISQLQSAVIGPFTVIGSDTKIGN 351

Query: 357 NSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVV 416
           N+KIS+SVIGEGC IGSNV+IEG YIWDN+IIEDGC+L+H I+CDGV +K+GAVL+PGV+
Sbjct: 352 NTKISNSVIGEGCKIGSNVIIEGCYIWDNIIIEDGCKLQHAIICDGVTIKSGAVLEPGVI 411

Query: 417 LSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSE 476
           LSFKVV+G  FVVP +SKVSL QQP   DSDEELEYAD++SG V        S     + 
Sbjct: 412 LSFKVVVGPEFVVPPYSKVSLFQQPIEEDSDEELEYADSTSGIVYSPAVIVYSPAVKLAL 471

Query: 477 SSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRT 536
            + A   +LG GG G++WS CEG  EEEWRHSVAPIP+DK+ E  + M+DD EL T D +
Sbjct: 472 QNIAS--QLGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKILEAIKTMEDDLEL-THDDS 528

Query: 537 ALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRG 596
            L  SGEL  +SN S+ DD+EDS+DDS YF+KEVEATFLRAV EN++  H+ILE+NSL+ 
Sbjct: 529 FLPPSGELKPNSNYSDDDDHEDSRDDSYYFDKEVEATFLRAVHENIQESHLILEINSLKL 588

Query: 597 SLD 599
           S +
Sbjct: 589 SYN 591

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573050|ref|XP_003554678.1| PREDICTED: probable translation initiation factor eIF-2B subunit epsilon-like isoform 2 [Glycine max]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/608 (72%), Positives = 496/608 (81%), Gaps = 35/608 (5%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKKR         VSEDPD+L R PLQAILLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQKKR---------VSEDPDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 51

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL WLE+AGV +VFVFCC+HSKQVI YLE SEW SQPNFTV T+ES N +SAGDAL
Sbjct: 52  MINYTLTWLESAGVEDVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDAL 111

Query: 121 RLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176
           R+IYE+NV    IHGDFVLISGDTVSNM LTQAL EHKERKKKD+NAVMTM+IK+SKP+P
Sbjct: 112 RVIYERNVVCLSIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNP 171

Query: 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCY 236
             HQSRLGTDELFMAIDPNTKQLLYYEDKAD SKG + LDK LL +NPS+SLH+DKQDCY
Sbjct: 172 AIHQSRLGTDELFMAIDPNTKQLLYYEDKADQSKGKLHLDKSLLFDNPSLSLHHDKQDCY 231

Query: 237 IDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDI 296
           IDICSPEVLSLFTDNFDYQHLRRHFVKGLL+DDIMGYKIF HEIHS YAARIDN+R YD 
Sbjct: 232 IDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRGYDT 291

Query: 297 VSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS 356
           VSKDII RWTYP VPDV   GN ATKLER+GMYRA EI Q +SA +G FTVIG  TKIG+
Sbjct: 292 VSKDIIHRWTYPLVPDVMNFGNTATKLERQGMYRASEISQLQSAVIGPFTVIGSDTKIGN 351

Query: 357 NSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVV 416
           N+KIS+SVIGEGC IGSNV+IEG YIWDN+IIEDGC+L+H I+CDGV +K+GAVL+PGV+
Sbjct: 352 NTKISNSVIGEGCKIGSNVIIEGCYIWDNIIIEDGCKLQHAIICDGVTIKSGAVLEPGVI 411

Query: 417 LSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVE-----FSCTADQSNG 471
           LSFKVV+G  FVVP +SKVSL QQP   DSDEELEYAD++SG V      ++   DQ   
Sbjct: 412 LSFKVVVGPEFVVPPYSKVSLFQQPIEEDSDEELEYADSTSGIVYSPAVIYTFFIDQ--- 468

Query: 472 EMTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELV 531
                        LG GG G++WS CEG  EEEWRHSVAPIP+DK+ E  + M+DD EL 
Sbjct: 469 -------------LGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKILEAIKTMEDDLEL- 514

Query: 532 TQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEV 591
           T D + L  SGEL  +SN S+ DD+EDS+DDS YF+KEVEATFLRAV EN++  H+ILE+
Sbjct: 515 THDDSFLPPSGELKPNSNYSDDDDHEDSRDDSYYFDKEVEATFLRAVHENIQESHLILEI 574

Query: 592 NSLRGSLD 599
           NSL+ S +
Sbjct: 575 NSLKLSYN 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226869|ref|NP_181042.1| translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gi|3033392|gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gi|22655208|gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gi|34098787|gb|AAQ56776.1| At2g34970 [Arabidopsis thaliana] gi|330253950|gb|AEC09044.1| translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/608 (68%), Positives = 486/608 (79%), Gaps = 27/608 (4%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKK      AAARVSED +  +R  LQAILLADSF TKFRP+TLERPKVLLP+VNVP
Sbjct: 1   MGAQKK----GGAAARVSEDAEVQSRHRLQAILLADSFATKFRPVTLERPKVLLPIVNVP 56

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MI+YTLAWLE+AG+ EVFVFCCAHS QVI+YLE SEW+S PN  V+TIESH  ISAGDAL
Sbjct: 57  MIDYTLAWLESAGIEEVFVFCCAHSMQVIEYLEKSEWYSHPNLLVRTIESHKSISAGDAL 116

Query: 121 RLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176
           R +YEQ      I GDFVL+SGDTVSNM L   +QEH+ERKKKD  A+MTM+IK+SK SP
Sbjct: 117 RYMYEQQTETSQIQGDFVLVSGDTVSNMPLADLIQEHRERKKKDEKAIMTMVIKQSKSSP 176

Query: 177 ITHQSRLGTDELFMAIDPNTKQLLYYE-DKADHSKGTICLDKMLLAENPSISLHNDKQDC 235
           +THQSRLGTD+LF+A+DP TKQLL+YE DK DH  G++CL+K LL  NPS+ + ND QDC
Sbjct: 177 LTHQSRLGTDQLFIAVDPLTKQLLHYEEDKIDHPSGSVCLEKSLLDTNPSVLVCNDMQDC 236

Query: 236 YIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYD 295
           YIDICSPEVLSLF DNFDYQHLRRHFVKG+L+DDIMGYKIFTHEIHSSYA RIDN+RSYD
Sbjct: 237 YIDICSPEVLSLFEDNFDYQHLRRHFVKGVLVDDIMGYKIFTHEIHSSYAGRIDNFRSYD 296

Query: 296 IVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIG 355
            VSKDIIQRWTYPYVPD+ F GNR  KL R+G+Y+A ++ QSRSA VG+ TVIGYGTKIG
Sbjct: 297 TVSKDIIQRWTYPYVPDINFSGNRPLKLGRQGIYKASDVVQSRSADVGASTVIGYGTKIG 356

Query: 356 SNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415
              KI +SVIG GC+IGSNV+IEGSYIW+NV IEDGCE+R+ IVCDGV ++AGAVL+PGV
Sbjct: 357 HGDKIMNSVIGNGCSIGSNVVIEGSYIWNNVTIEDGCEIRNAIVCDGVKIRAGAVLQPGV 416

Query: 416 VLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNG---E 472
           VLSF VV+G  FVVPA+SKVSLLQQPT  DSDEELEYAD+SSG      TAD  +G   +
Sbjct: 417 VLSFNVVVGRDFVVPAYSKVSLLQQPTTEDSDEELEYADSSSG------TADHLSGLNLQ 470

Query: 473 MTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVT 532
           M S++SE     LG  G GYIW +CEG  +EEW+HSVAPIP+DKL+E+++A+    +  T
Sbjct: 471 MESKASE-----LGPDGAGYIWEVCEGAHDEEWKHSVAPIPKDKLSEITQAI---DDDDT 522

Query: 533 QDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVN 592
            D + + TSGEL SD+++   D N D  DD  YFEKEVE T LRAVEEN+KVD V +E+N
Sbjct: 523 DDESVVPTSGELKSDADSINTDVN-DPNDDYYYFEKEVEGTVLRAVEENIKVDLVTMEIN 581

Query: 593 SLRGSLDF 600
            LR S + 
Sbjct: 582 GLRLSFNM 589

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823289|ref|XP_002879527.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325366|gb|EFH55786.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/608 (68%), Positives = 485/608 (79%), Gaps = 28/608 (4%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQKK        ARVSED  + +RQ LQAILLADSF TKFRP+TLERPKVLLP+VNVP
Sbjct: 1   MGAQKK-----GGGARVSEDAVEQSRQRLQAILLADSFATKFRPVTLERPKVLLPIVNVP 55

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MI+YTLAWLE+AG+ EVFVFCCAHS QVI+YLE SEW+S PN  V+TIESH  ISAGDAL
Sbjct: 56  MIDYTLAWLESAGIEEVFVFCCAHSMQVIEYLEKSEWYSHPNLLVRTIESHKSISAGDAL 115

Query: 121 RLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176
           R +YEQ      I GDFVL+SGDTVSNM L   ++EH+ERKKKD  A+MTM+IK+SK SP
Sbjct: 116 RYMYEQQTETSQIQGDFVLVSGDTVSNMPLADLIKEHRERKKKDEKAIMTMVIKQSKSSP 175

Query: 177 ITHQSRLGTDELFMAIDPNTKQLLYYE-DKADHSKGTICLDKMLLAENPSISLHNDKQDC 235
           +THQSRLGTD+LF+A+DP TKQLL+YE DK DH  G++CL+K LL  NPS+ + ND QDC
Sbjct: 176 LTHQSRLGTDQLFIAVDPLTKQLLHYEEDKVDHPSGSVCLEKSLLDTNPSVLVCNDMQDC 235

Query: 236 YIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYD 295
           YIDICSPEVLSLF DNFDYQHLRRHFVKG+L+DDIMGYKIFTHEIHSSYA RIDN+RSYD
Sbjct: 236 YIDICSPEVLSLFEDNFDYQHLRRHFVKGVLVDDIMGYKIFTHEIHSSYAGRIDNFRSYD 295

Query: 296 IVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIG 355
            VSKDIIQRWTYPYVPD+ F GNR  KL R+G+YRA ++ QSRSA VG+ TVIGYGTKIG
Sbjct: 296 TVSKDIIQRWTYPYVPDINFSGNRPLKLGRQGIYRASDVVQSRSADVGASTVIGYGTKIG 355

Query: 356 SNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415
           +  KIS+SVIG GC+IGSNV+IEGSYIW+NV IEDGCE+R+ IVCDGV ++AGAVL+PGV
Sbjct: 356 NGDKISNSVIGNGCSIGSNVVIEGSYIWNNVTIEDGCEIRNAIVCDGVKIRAGAVLQPGV 415

Query: 416 VLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNG---E 472
           VLSF VV+G  FVVPA+SKVSLLQQPT  DSDEELEYAD+SSG      TAD  +G   +
Sbjct: 416 VLSFNVVVGRDFVVPAYSKVSLLQQPTTEDSDEELEYADSSSG------TADHLSGLNLQ 469

Query: 473 MTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVT 532
           M S++SE     LG  G GYIW  CEG  +EEW+HSVAPIP+DKL E+++A+    +  T
Sbjct: 470 MESKASE-----LGPDGAGYIWEACEGAHDEEWKHSVAPIPKDKLFEITQAI---DDDDT 521

Query: 533 QDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVN 592
            D + + TSGEL SD+++   D N D  DD  YFEKEVE T LRAVEEN+KVD V LE+N
Sbjct: 522 DDESVVPTSGELKSDADSINTDVN-DPNDDYYYFEKEVEGTVLRAVEENIKVDLVTLEIN 580

Query: 593 SLRGSLDF 600
            LR S + 
Sbjct: 581 GLRLSYNM 588

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136048|gb|ADN33899.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Cucumis melo subsp. melo]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/606 (66%), Positives = 467/606 (77%), Gaps = 64/606 (10%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQ+K       A+RVS+D ++LAR  LQA+LLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQRK------GASRVSDDHEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVP 54

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL+WLE+AGV EVFVFCCA+SKQVIDYLENSEW S P+F V+TIESHN ISAGDAL
Sbjct: 55  MINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVRTIESHNSISAGDAL 114

Query: 121 RLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180
           RLIYE+NVIHGDFVLI+GDT+SNM LTQALQEHKERKKKD+NAVMTM++K+SKPSPITHQ
Sbjct: 115 RLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQ 174

Query: 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240
           SRLGTDELFMAID NTKQL+YYEDK D++KG I LDK L+ +N SISLHND QDCYIDIC
Sbjct: 175 SRLGTDELFMAIDHNTKQLVYYEDKVDYAKGIIHLDKSLIMDNSSISLHNDMQDCYIDIC 234

Query: 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300
           SPEVLSLFTDNFDYQHLRRHFVKGLLLDDI+                             
Sbjct: 235 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIV----------------------------- 265

Query: 301 IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI 360
                      DV   G+ +  L+ R            SAQVG FTVIG  +KIG N+KI
Sbjct: 266 -----------DV---GSSSEILQAR------------SAQVGPFTVIGDNSKIGDNTKI 299

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
           ++S+IG GC+IGSNV IEGSYIWDNV IEDGC+L H IVCDGV++K+GA L+PGV+LSFK
Sbjct: 300 TNSIIGHGCSIGSNVKIEGSYIWDNVTIEDGCKLSHAIVCDGVVIKSGAELEPGVILSFK 359

Query: 421 VVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEA 480
           VV+G++F VP++SKVSL +QPT  DSDEELEYADNSSG VEF+ T D+SN  + S+S E 
Sbjct: 360 VVVGDQFTVPSYSKVSLFEQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSKSLEM 419

Query: 481 H---KPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTA 537
                 +LG GG+GY+WSICEG  EEEWRHSVAPIP DKL ++     DD+  +TQD   
Sbjct: 420 QGWPASELGKGGLGYVWSICEGSVEEEWRHSVAPIPADKLEKVLHKAPDDEVELTQDANV 479

Query: 538 LSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGS 597
           L  SGEL SDS  S+GDDNE S+DDS++FEKEVEATFLRAV EN++V +VILEVNSLR S
Sbjct: 480 LPPSGELKSDSYISDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRLS 539

Query: 598 LDFTCS 603
            +   S
Sbjct: 540 FNKVAS 545

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442881|ref|XP_004139209.1| PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cucumis sativus] gi|449482909|ref|XP_004156440.1| PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cucumis sativus]

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/606 (65%), Positives = 466/606 (76%), Gaps = 65/606 (10%)

Query: 1   MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
           MGAQ+K       A+RVS+D ++LAR  LQA+LLADSFTTKFRPITLERPKVLLPLVNVP
Sbjct: 1   MGAQRK------GASRVSDDHEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVP 54

Query: 61  MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
           MINYTL+WLE+AGV EVFVFCCA+SKQVIDYLENS+W S P+F V+TIESHN ISAGDAL
Sbjct: 55  MINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSDWVSLPDFAVRTIESHNSISAGDAL 114

Query: 121 RLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180
           RLIYE+NVIHGDFVLI+GDT+SNM LTQALQEHKERKKKD+NAVMTM++K+SKPSPITHQ
Sbjct: 115 RLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQ 174

Query: 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240
           SRLGTDELFMAID NTKQL+YYED+ D+SKG I LDK L+ +N SISLHND QDCYIDIC
Sbjct: 175 SRLGTDELFMAIDHNTKQLVYYEDRVDYSKGIIHLDKSLIMDNSSISLHNDMQDCYIDIC 234

Query: 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD 300
           SPEVLSLFTDNFDYQHLRRHFVKGLLLDDI+                       D+ S +
Sbjct: 235 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIV-----------------------DVGSSE 271

Query: 301 IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI 360
           I+                                 Q+RSAQVG FTVIG  +KIG N+KI
Sbjct: 272 IL---------------------------------QARSAQVGPFTVIGDNSKIGDNTKI 298

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
           ++S+IG GC+IGSNV IEGSYIWDNV IEDGC++ + IVCDGV++K+GA L+PGV+LSFK
Sbjct: 299 TNSIIGHGCSIGSNVKIEGSYIWDNVTIEDGCKISNAIVCDGVVIKSGAELEPGVILSFK 358

Query: 421 VVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEA 480
           VV+G++F VP++SKVSL +QPT  DSDEELEYADNSSG VEF+ T D+SN  + S   E 
Sbjct: 359 VVVGDQFTVPSYSKVSLFEQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSNPLEM 418

Query: 481 H---KPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTA 537
                 +LG GG+GY+WSICEG  EEEWRHSVAPIP DKL ++     DD+  +TQD   
Sbjct: 419 QGWPASELGKGGLGYVWSICEGSVEEEWRHSVAPIPADKLEKVLHKAPDDEVELTQDANV 478

Query: 538 LSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGS 597
           L  SGEL SDS  S+GDDNE S+DDS++FEKEVEATFLRAV EN++V +VILEVNSLR S
Sbjct: 479 LPPSGELKSDSYVSDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRLS 538

Query: 598 LDFTCS 603
            +   S
Sbjct: 539 FNKVAS 544

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
TAIR|locus:2044712	730	AT2G34970 "AT2G34970" [Arabido	0.946	0.798	0.682	9.1e-219
TAIR|locus:2141921	709	AT4G18300 "AT4G18300" [Arabido	0.915	0.795	0.630	9.8e-190
TAIR|locus:2076477	676	AT3G02270 "AT3G02270" [Arabido	0.673	0.613	0.644	1.5e-162
DICTYBASE|DDB_G0283163	707	eif2b5 "bacterial transferase	0.696	0.606	0.422	4.7e-99
UNIPROTKB|C0H8R1	702	EI2BE "Translation initiation	0.805	0.706	0.380	9.8e-97
ZFIN|ZDB-GENE-030131-5364	703	eif2b5 "eukaryotic translation	0.793	0.695	0.375	1.4e-95
CGD|CAL0005543	732	GCD6 [Candida albicans (taxid:	0.925	0.778	0.351	2.1e-91
UNIPROTKB|P87163	732	GCD6 "Translation initiation f	0.925	0.778	0.351	2.1e-91
POMBASE|SPAC8C9.15c	678	tif225 "translation initiation	0.672	0.610	0.388	4.1e-88
UNIPROTKB|E1BPB3	728	EIF2B5 "Uncharacterized protei	0.913	0.773	0.336	8e-85

TAIR|locus:2044712 AT2G34970 "AT2G34970" [Arabidopsis thaliana (taxid:3702)]

 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 412/604 (68%), Positives = 483/604 (79%)

Query:     1 MGAQKKRXXXXXXXXRVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
             MGAQKK         RVSED +  +R  LQAILLADSF TKFRP+TLERPKVLLP+VNVP
Sbjct:     1 MGAQKK----GGAAARVSEDAEVQSRHRLQAILLADSFATKFRPVTLERPKVLLPIVNVP 56

Query:    61 MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDAL 120
             MI+YTLAWLE+AG+ EVFVFCCAHS QVI+YLE SEW+S PN  V+TIESH  ISAGDAL
Sbjct:    57 MIDYTLAWLESAGIEEVFVFCCAHSMQVIEYLEKSEWYSHPNLLVRTIESHKSISAGDAL 116

Query:   121 RLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176
             R +YEQ      I GDFVL+SGDTVSNM L   +QEH+ERKKKD  A+MTM+IK+SK SP
Sbjct:   117 RYMYEQQTETSQIQGDFVLVSGDTVSNMPLADLIQEHRERKKKDEKAIMTMVIKQSKSSP 176

Query:   177 ITHQSRLGTDELFMAIDPNTKQLLYYE-DKADHSKGTICLDKMLLAENPSISLHNDKQDC 235
             +THQSRLGTD+LF+A+DP TKQLL+YE DK DH  G++CL+K LL  NPS+ + ND QDC
Sbjct:   177 LTHQSRLGTDQLFIAVDPLTKQLLHYEEDKIDHPSGSVCLEKSLLDTNPSVLVCNDMQDC 236

Query:   236 YIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYD 295
             YIDICSPEVLSLF DNFDYQHLRRHFVKG+L+DDIMGYKIFTHEIHSSYA RIDN+RSYD
Sbjct:   237 YIDICSPEVLSLFEDNFDYQHLRRHFVKGVLVDDIMGYKIFTHEIHSSYAGRIDNFRSYD 296

Query:   296 IVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIG 355
              VSKDIIQRWTYPYVPD+ F GNR  KL R+G+Y+A ++ QSRSA VG+ TVIGYGTKIG
Sbjct:   297 TVSKDIIQRWTYPYVPDINFSGNRPLKLGRQGIYKASDVVQSRSADVGASTVIGYGTKIG 356

Query:   356 SNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415
                KI +SVIG GC+IGSNV+IEGSYIW+NV IEDGCE+R+ IVCDGV ++AGAVL+PGV
Sbjct:   357 HGDKIMNSVIGNGCSIGSNVVIEGSYIWNNVTIEDGCEIRNAIVCDGVKIRAGAVLQPGV 416

Query:   416 VLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTS 475
             VLSF VV+G  FVVPA+SKVSLLQQPT  DSDEELEYAD+SSGT +        N +M S
Sbjct:   417 VLSFNVVVGRDFVVPAYSKVSLLQQPTTEDSDEELEYADSSSGTADH---LSGLNLQMES 473

Query:   476 ESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDR 535
             ++SE     LG  G GYIW +CEG  +EEW+HSVAPIP+DKL+E+++A+DDD    T D 
Sbjct:   474 KASE-----LGPDGAGYIWEVCEGAHDEEWKHSVAPIPKDKLSEITQAIDDDD---TDDE 525

Query:   536 TALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLR 595
             + + TSGEL SD+++   D N D  DD  YFEKEVE T LRAVEEN+KVD V +E+N LR
Sbjct:   526 SVVPTSGELKSDADSINTDVN-DPNDDYYYFEKEVEGTVLRAVEENIKVDLVTMEINGLR 584

Query:   596 GSLD 599
              S +
Sbjct:   585 LSFN 588

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2141921 AT4G18300 "AT4G18300" [Arabidopsis thaliana (taxid:3702)]

 Score = 1839 (652.4 bits), Expect = 9.8e-190, P = 9.8e-190
 Identities = 381/604 (63%), Positives = 453/604 (75%)

Query:     1 MGAQKKRXXXXXXXXRVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVP 60
             MGAQKK         +V ED +DL+RQ LQAILLADSFTT+FR ITLERPKVLLP+VN+P
Sbjct:     1 MGAQKKPAAA-----KVREDSEDLSRQRLQAILLADSFTTQFRSITLERPKVLLPIVNIP 55

Query:    61 MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPN--FTVKTIESHNIISAGD 118
             MI+YTLAWLE+AG+ EVFVFCCAHS Q+IDYL+ SEW+++PN    V+TI SHN  S GD
Sbjct:    56 MIDYTLAWLESAGIEEVFVFCCAHSSQIIDYLKKSEWYTRPNPNLLVRTIVSHNSTSVGD 115

Query:   119 ALRLIYEQNV----IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKP 174
             ALR IYEQ      I GDFVL+SGDTVSNM L   +Q+H++RKKKD  A+MTM+ KK   
Sbjct:   116 ALRYIYEQQTETSQIQGDFVLVSGDTVSNMPLADLIQQHRDRKKKDEKAIMTMVFKK--- 172

Query:   175 SPITHQSRLG--TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232
                  QSRLG  +D+LF+A+DP TKQLL+YE+  +   G  CLDK LL    S  L +D 
Sbjct:   173 -----QSRLGIGSDQLFVAVDPLTKQLLHYEE-CNSRGGDFCLDKSLL---DSTVLCSDM 223

Query:   233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNY 291
             QDCYIDICSPEVLSLF DNFDYQH+RRHFV GLL+DDIMGYKIFTHEI SS YAARIDN 
Sbjct:   224 QDCYIDICSPEVLSLFEDNFDYQHMRRHFVNGLLVDDIMGYKIFTHEIQSSCYAARIDNL 283

Query:   292 RSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYG 351
             RSYD VSKDIIQRWTYPYVP++ F GNR  KL RRG+YRA +  QS +A VG+ TVIGYG
Sbjct:   284 RSYDTVSKDIIQRWTYPYVPNIDFSGNRPVKLGRRGIYRASDAVQSHTADVGASTVIGYG 343

Query:   352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411
             TKIG+  KI +SVIG GC IGSNV+I+GSYIW+NV IEDGCE+R+ IVCDGV ++AGAVL
Sbjct:   344 TKIGNGGKIYNSVIGNGCCIGSNVVIQGSYIWNNVTIEDGCEIRNAIVCDGVKVRAGAVL 403

Query:   412 KPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNG 471
             +PGVVLSF VV+G  FVVPA+SKVSLLQQPT  DSDEELEYAD+SSGT + S  +  +N 
Sbjct:   404 QPGVVLSFSVVVGRDFVVPAYSKVSLLQQPTTEDSDEELEYADSSSGTADHS--SGLNNL 461

Query:   472 EMTSESSEAHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELV 531
             ++ S++SE     LG  G GYIW IC+   +EEW+HSV PIP DKL +++ AMDDD    
Sbjct:   462 QIESKASE-----LGPDGAGYIWEICDSAHDEEWKHSVVPIPMDKLADITGAMDDDD--- 513

Query:   532 TQDRTALSTSGELISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEV 591
              +D   +  SGEL SD++    D N DS  D   FE+EVE  FL AVE++ K D VI  +
Sbjct:   514 IEDDIVVPPSGELKSDTDIINTDAN-DSYGD---FEREVEEEFLSAVEKDNKADIVIPLI 569

Query:   592 NSLR 595
             NS R
Sbjct:   570 NSHR 573

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

TAIR|locus:2076477 AT3G02270 "AT3G02270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 1.5e-162, Sum P(2) = 1.5e-162
 Identities = 285/442 (64%), Positives = 347/442 (78%)

Query:    16 RVSEDPDD--LARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG 73
             ++SED ++    RQ LQAILLADSF TK  P+TLERP VLLPLVN+PMI+YTLAWLE+AG
Sbjct:    10 KISEDSEEEQSRRQRLQAILLADSFATKLLPLTLERPNVLLPLVNIPMIDYTLAWLESAG 69

Query:    74 VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES-HNIISAGDALRLIYEQNV---- 128
             + EVFVFC   S QVIDYL NS+W+S  +FTVKTIES  N  SAGDALR IYEQ +    
Sbjct:    70 IEEVFVFC---SMQVIDYLNNSDWYSHKDFTVKTIESPQNSTSAGDALRYIYEQQIETSQ 126

Query:   129 IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT-HQSRLGTDE 187
             I GDFVL++G  VSNM LTQ +QEH++RKKKD  A+MTM+I++S    IT HQ       
Sbjct:   127 IQGDFVLVNGCIVSNMPLTQLIQEHRDRKKKDEKAIMTMVIRQSL---ITDHQ------- 176

Query:   188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL 247
             LF+A++P TKQLLYY++  D+    IC DK LL  NPS+ L +D QDCYIDICS EVLSL
Sbjct:   177 LFIAVNPLTKQLLYYDE--DN----ICFDKSLLDRNPSVLLCSDMQDCYIDICSLEVLSL 230

Query:   248 FTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTY 307
             F DNFDYQH+R  FV+G+L DDI+GYKIFTHEI S YA+RI+N+RSYD+VSKDIIQR T+
Sbjct:   231 FVDNFDYQHMRCDFVEGVLADDIIGYKIFTHEISSCYASRIENFRSYDMVSKDIIQRRTF 290

Query:   308 PYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE 367
             PYVPD+KF GNR  KLER+G+Y+A +  Q  SA VG+  VIG+ T IGS +KI +SVIG 
Sbjct:   291 PYVPDMKFSGNRTLKLERQGIYKASDATQLPSAHVGASYVIGHATNIGSGTKILNSVIGN 350

Query:   368 GCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427
             GC+IGSNV+I+GSYIW+NV +EDGCE+R+ IVCD V + AGA++KPGVVLSFKVV+G  F
Sbjct:   351 GCSIGSNVVIQGSYIWNNVTVEDGCEIRNAIVCDEVKVCAGAIVKPGVVLSFKVVVGRDF 410

Query:   428 VVPAHSKVSLLQQPTVHDSDEE 449
             VVPA+S+VSLL+QP   DSDEE
Sbjct:   411 VVPAYSQVSLLRQPMEEDSDEE 432

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0283163 eif2b5 "bacterial transferase hexapeptide repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 952 (340.2 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
 Identities = 184/435 (42%), Positives = 277/435 (63%)

Query:    18 SEDPDDLARQP-LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAE 76
             S + D L  +  LQA++L DSF  KF PITLE+P+ LLPLVN+P+++YTL +L A+GV +
Sbjct:    13 SSNMDQLKSEDILQAVVLGDSFDRKFAPITLEKPRTLLPLVNIPLLDYTLEFLAASGVQQ 72

Query:    77 VFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLI 136
             +FVFCCAH+ Q+ +Y+++S W   P   V  +   N  + GDALR +Y+  VI  DF+LI
Sbjct:    73 IFVFCCAHASQIKEYIQSSRWHDLPGVQVICMTGSNCRTTGDALRGVYDAQVIQSDFILI 132

Query:   137 SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT 196
             SGD VSNM L +ALQ HK+R++ D N +MTM+ K++     TH++R   D+  +  + +T
Sbjct:   133 SGDVVSNMNLQKALQIHKDRRELDKNNIMTMVYKQASS---THRTRSKQDDTVIWCNRDT 189

Query:   197 KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH 256
              Q++ Y++     K +I ++  L  ++PSI +  D  DC+IDICSPEVL+LF DNFD+  
Sbjct:   190 MQVVCYDNSPSKKKSSISVE--LFQKHPSIQMRYDLIDCHIDICSPEVLALFNDNFDFAD 247

Query:   257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFC 316
             +R+ F+  +L  D++ YK+  + +   YAAR+ + R+Y  VSKDII RWT+P VPD  F 
Sbjct:   248 IRKDFIHDILTSDLLDYKLSAYVLQGEYAARVKDLRTYHSVSKDIIHRWTFPMVPDNNFM 307

Query:   317 GNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVL 376
              N +  L R+ +Y+   ++      +   TVIG  T+IG+ S +S S IG  C IG NV 
Sbjct:   308 CNSSYSLSRQMIYKEKNVKLLGDCLISDETVIGTQTEIGAGSIVSHSTIGRNCIIGKNVK 367

Query:   377 IEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436
             I GSYIWD+V I+D   + H I+C+G I+K+ +++  G ++ F V IG+   +   SK++
Sbjct:   368 INGSYIWDDVTIQDNAIIDHSIICNGSIIKSSSIIGRGSIIGFNVYIGQSKTLEPFSKIT 427

Query:   437 LLQQPTVHDSDEELE 451
             + Q     D +E LE
Sbjct:   428 MAQYNEDEDDEELLE 442

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0043614 "multi-eIF complex" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|C0H8R1 EI2BE "Translation initiation factor eIF-2B subunit epsilon" [Salmo salar (taxid:8030)]

 Score = 878 (314.1 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
 Identities = 203/533 (38%), Positives = 302/533 (56%)

Query:    18 SEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEV 77
             SE  ++   QPLQA+L+ADSF  +F PI+ ++P+ LLPL NV MI+YTL +L + GV E 
Sbjct:    15 SEQEEE--EQPLQAVLVADSFNRRFFPISKDQPRALLPLGNVAMIDYTLEFLTSTGVQET 72

Query:    78 FVFCCAHSKQVIDYLENSEWF--SQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVL 135
             FVFCC  S ++ D+L  S+W   + PN  V  I S    S GD LR +  +N++  DF+L
Sbjct:    73 FVFCCWMSNKIKDHLLKSKWCRPTSPN-VVHIITSDLYRSLGDVLRDVDAKNLVRNDFIL 131

Query:   136 ISGDTVSNMLLTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDP 194
             + GD VSN+ ++QALQEH+ R+K D N +VMTM+ K+S P    H+SR   D++ + +D 
Sbjct:   132 VYGDVVSNIDVSQALQEHRHRRKVDKNISVMTMVFKESSPG---HKSRCEEDDVIVVMDS 188

Query:   195 NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY 254
              +K++L+Y+      K    ++ +    +    + +D  DC+I ICSP+V  LFTDNFDY
Sbjct:   189 KSKRVLHYQKTQGLKKLQFPMN-IFQHGSDEFEVRHDLLDCHISICSPQVAELFTDNFDY 247

Query:   255 QHLRRHFVKGLLL-DDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDV 313
             Q  R  FV+G+L+ ++I+G +I  +     Y AR+ N + YD VS D+++RW YP  P+ 
Sbjct:   248 Q-TRNDFVRGILVNEEILGNQIHLYVTQDGYGARVSNLQMYDSVSSDMVRRWVYPLTPEA 306

Query:   314 KFC---GNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCT 370
              F    G   T   R  +YR  E+     +Q+    +IG  T IG+N  IS+S+IG  CT
Sbjct:   307 NFTDQQGQGCTH-SRHNVYRGAEVSLGHGSQMEENVLIGRDTSIGANCHISNSIIGNNCT 365

Query:   371 IGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP 430
             IG NV+++ +Y+W+NV I    E+   +VCDG ++K    L    VL++ VVIG    +P
Sbjct:   366 IGDNVVLDRAYMWNNVHISSNVEIHQSVVCDGAVVKEAVRLNKQCVLAYNVVIGPNLSLP 425

Query:   431 AHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSE-AHKP-KLGTG 488
               + VS+      H  +EE E  D+     EF  + DQ  G    ++ + A  P ++G G
Sbjct:   426 EGTVVSM------HHPEEEEEDDDD-----EF-LSDDQEVGHSKDKTRQKAFNPAEVGPG 473

Query:   489 GVGYIWSICEGGQEEE------WRHSVAPIPE-DKLTELSEAMDDDQELVTQD 534
             G GYIW       E+E      W   + P PE D  +E SE   D    V+ +
Sbjct:   474 GKGYIWKASMDDTEDEELAQCLWGLVLNPDPESDSESEASEESQDRSRSVSPE 526

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

GO:0014002 "astrocyte development" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0042552 "myelination" evidence=ISS

GO:0048708 "astrocyte differentiation" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

ZFIN|ZDB-GENE-030131-5364 eif2b5 "eukaryotic translation initiation factor 2B, subunit 5 epsilon" [Danio rerio (taxid:7955)]

 Score = 861 (308.1 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
 Identities = 196/522 (37%), Positives = 301/522 (57%)

Query:    20 DPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFV 79
             D D+   QPLQA+L+ADSF  +F PIT ++P+ LLPL NV MI+YTL +L + GV E FV
Sbjct:    17 DKDE-EEQPLQAVLVADSFNRRFFPITKDQPRALLPLANVSMIDYTLEFLTSTGVQETFV 75

Query:    80 FCCAHSKQVIDYLENSEWF--SQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLIS 137
             FCC  S ++ ++L  S+W   + PN  V  I S    S GD LR +  ++++  DF+L+ 
Sbjct:    76 FCCWMSSKIKEHLLKSKWCRPTSPN-VVHIITSDLYRSLGDVLRDVDAKSLVRSDFLLVY 134

Query:   138 GDTVSNMLLTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT 196
             GD VSN+ ++QALQEH++R+K + N +VMTMI K+S P    H++R   +++ MAID  +
Sbjct:   135 GDVVSNVDVSQALQEHRQRRKMEKNVSVMTMIFKESSPG---HKTRCEEEDMIMAIDSKS 191

Query:   197 KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH 256
             K++L+Y+ +A   K       +  + +    +  D  DC+I ICSP+V  LFTDNFDYQ 
Sbjct:   192 KRILHYQ-RAQALKRLQFPMNIFHSASDEFEIRFDLLDCHISICSPQVAELFTDNFDYQ- 249

Query:   257 LRRHFVKGLLL-DDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKF 315
              +  FV+G+L+ ++I+G +I  H     Y AR+ N   YD +S D+I+RW YP  PD  F
Sbjct:   250 TKNDFVRGILVSEEILGNQIHMHVTKDGYGARVSNLLMYDTISSDMIRRWIYPITPDANF 309

Query:   316 C---GNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIG 372
                 G   T   R  +YR   +     +Q+    +IG  T IG+N  IS++VIG  C IG
Sbjct:   310 ADQDGQSCTH-SRHNVYREPGVSLGHGSQMEENVLIGRNTVIGANCSISNTVIGANCVIG 368

Query:   373 SNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432
              NV +E +YIW+ V I +  +++  ++CDGV +K G VL    VL++ VV+G    +PA 
Sbjct:   369 DNVTLERAYIWNRVHIANNVKVKQSVICDGVEVKHGVVLNEQCVLAYNVVVGPDIALPAG 428

Query:   433 SKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGY 492
             + VS+   P   D +++ E+  + +         D S+ +   +    +  ++G+ G GY
Sbjct:   429 TVVSM-HHPDEEDDEDDDEFLSDDN---------DVSHNKDKIKQKVFNPAEVGSEGKGY 478

Query:   493 IW--SICEGGQEEE-----WRHSVAPIPE-DKLTELSEAMDD 526
              W  S  +  +E+E     W  ++ P PE D  +E+SE   D
Sbjct:   479 RWKSSSLDDTEEDELAECIWGLALNPDPESDSESEVSEGSHD 520

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

CGD|CAL0005543 GCD6 [Candida albicans (taxid:5476)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 211/600 (35%), Positives = 338/600 (56%)

Query:    18 SEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEV 77
             S+   DL  +  QAI+L DSF T+F P+T   P+ LLPL NVP+I YTL +L  AGV EV
Sbjct:    15 SKKSKDLVDERFQAIVLTDSFETRFMPLTAVHPRCLLPLANVPLIEYTLEFLANAGVNEV 74

Query:    78 FVFCCAHSKQVIDYLENSEWFSQPN-FTVKTIESHNIISAGDALRLIYEQNVIHGDFVLI 136
             ++ C AH+ Q+ +Y+ENS+W    + F+V TI S    S GD +R +  + +I GDF+L+
Sbjct:    75 YLMCSAHADQIQEYIENSKWMGDNSPFSVTTIMSIESRSVGDTMRDLDNRGLIAGDFLLV 134

Query:   137 SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT 196
             SGD V+NM  ++ALQ HK++K +D + + TM++ ++ P    H++R   D     +D  T
Sbjct:   135 SGDVVTNMDFSKALQFHKQKKAQDKDHIATMVLNQASP---LHRTRSQIDPAAFVLDKET 191

Query:   197 KQLLYYED--KADHSKGTICLDKMLLAE-NPSISLHNDKQDCYIDICSPEVLSLFTDNFD 253
              + ++Y+        K  I +D  LL +    + + ND  DC++DICSP V  +F +NFD
Sbjct:   192 NRCIFYQSIPPVSGKKTCISIDPELLEDFQGELQVRNDLIDCHVDICSPHVPQIFQENFD 251

Query:   254 YQHLRRHFVKGLLLDDIMGYKIFTH--EIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVP 311
             YQ+LR  F+KG+L  D++   I+ +  +  S YAAR++++ +YD +S+DI+ RW YP VP
Sbjct:   252 YQYLRSDFLKGVLTSDLLKKTIYAYISKDSSEYAARVESWSTYDAISQDILARWCYPLVP 311

Query:   312 DVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI 371
             D       +   E   +Y+  +I  ++S ++G+ T IG  + +G  ++I +SVIG  CTI
Sbjct:   312 DSNLVEGNSYSYELNNIYKEDKIILAQSCKIGTSTSIGRNSSVGEGTQIKNSVIGRNCTI 371

Query:   372 GSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431
             G NV+IE SYIWDN +I+D   L   IV     +     L PG V+ F V+IG+  V+P 
Sbjct:   372 GKNVVIENSYIWDNAVIKDNSVLNRSIVAADAQIGNNVTLSPGSVIGFNVIIGDDKVIP- 430

Query:   432 HSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVG 491
             H+ V +++ P V ++ E  ++ D S+   E     +  +G      +      +G  G G
Sbjct:   431 HN-VKIVETPIVTEN-EFGDFDDESNSEDE----NEYEDGNAVPVLAVKDVELVGETGKG 484

Query:   492 YIW-SICEGGQE--EEW----RHS--VAPIPEDKLTELSEAMDDDQELVTQDRTALSTSG 542
             + + S  E G E  EE+     +S  +  +    +++ S A   ++++         +  
Sbjct:   485 FAYESEIESGDEDDEEFVGNGTYSGIIYQMNSLNVSDDSIASVSNKKVKKHSHRRRLSMN 544

Query:   543 ELISDSN-ASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFT 601
              +ISD+  A E D+ E+ +D    F  E  AT  RA+E N  +D  +LE+N+LR S++ T
Sbjct:   545 SMISDNGGAFESDEGEEEED----FGVEGLATVTRAIENNHDIDTALLELNTLRMSMNVT 600

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0032045 "guanyl-nucleotide exchange factor complex" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|P87163 GCD6 "Translation initiation factor eIF-2B subunit epsilon" [Candida albicans SC5314 (taxid:237561)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 211/600 (35%), Positives = 338/600 (56%)

Query:    18 SEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEV 77
             S+   DL  +  QAI+L DSF T+F P+T   P+ LLPL NVP+I YTL +L  AGV EV
Sbjct:    15 SKKSKDLVDERFQAIVLTDSFETRFMPLTAVHPRCLLPLANVPLIEYTLEFLANAGVNEV 74

Query:    78 FVFCCAHSKQVIDYLENSEWFSQPN-FTVKTIESHNIISAGDALRLIYEQNVIHGDFVLI 136
             ++ C AH+ Q+ +Y+ENS+W    + F+V TI S    S GD +R +  + +I GDF+L+
Sbjct:    75 YLMCSAHADQIQEYIENSKWMGDNSPFSVTTIMSIESRSVGDTMRDLDNRGLIAGDFLLV 134

Query:   137 SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT 196
             SGD V+NM  ++ALQ HK++K +D + + TM++ ++ P    H++R   D     +D  T
Sbjct:   135 SGDVVTNMDFSKALQFHKQKKAQDKDHIATMVLNQASP---LHRTRSQIDPAAFVLDKET 191

Query:   197 KQLLYYED--KADHSKGTICLDKMLLAE-NPSISLHNDKQDCYIDICSPEVLSLFTDNFD 253
              + ++Y+        K  I +D  LL +    + + ND  DC++DICSP V  +F +NFD
Sbjct:   192 NRCIFYQSIPPVSGKKTCISIDPELLEDFQGELQVRNDLIDCHVDICSPHVPQIFQENFD 251

Query:   254 YQHLRRHFVKGLLLDDIMGYKIFTH--EIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVP 311
             YQ+LR  F+KG+L  D++   I+ +  +  S YAAR++++ +YD +S+DI+ RW YP VP
Sbjct:   252 YQYLRSDFLKGVLTSDLLKKTIYAYISKDSSEYAARVESWSTYDAISQDILARWCYPLVP 311

Query:   312 DVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI 371
             D       +   E   +Y+  +I  ++S ++G+ T IG  + +G  ++I +SVIG  CTI
Sbjct:   312 DSNLVEGNSYSYELNNIYKEDKIILAQSCKIGTSTSIGRNSSVGEGTQIKNSVIGRNCTI 371

Query:   372 GSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431
             G NV+IE SYIWDN +I+D   L   IV     +     L PG V+ F V+IG+  V+P 
Sbjct:   372 GKNVVIENSYIWDNAVIKDNSVLNRSIVAADAQIGNNVTLSPGSVIGFNVIIGDDKVIP- 430

Query:   432 HSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVG 491
             H+ V +++ P V ++ E  ++ D S+   E     +  +G      +      +G  G G
Sbjct:   431 HN-VKIVETPIVTEN-EFGDFDDESNSEDE----NEYEDGNAVPVLAVKDVELVGETGKG 484

Query:   492 YIW-SICEGGQE--EEW----RHS--VAPIPEDKLTELSEAMDDDQELVTQDRTALSTSG 542
             + + S  E G E  EE+     +S  +  +    +++ S A   ++++         +  
Sbjct:   485 FAYESEIESGDEDDEEFVGNGTYSGIIYQMNSLNVSDDSIASVSNKKVKKHSHRRRLSMN 544

Query:   543 ELISDSN-ASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFT 601
              +ISD+  A E D+ E+ +D    F  E  AT  RA+E N  +D  +LE+N+LR S++ T
Sbjct:   545 SMISDNGGAFESDEGEEEED----FGVEGLATVTRAIENNHDIDTALLELNTLRMSMNVT 600

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

POMBASE|SPAC8C9.15c tif225 "translation initiation factor eIF2B epsilon subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 165/425 (38%), Positives = 274/425 (64%)

Query:    26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS 85
             +  LQAI+L+DS+  +FRP+TL++P+ LLPL N P+I YT  +L  AGV EV+VFCCAH+
Sbjct:    15 KHALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAHA 74

Query:    86 KQVIDYLENSEWF--SQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSN 143
              Q+ +Y+E S+W   S P F+V TI S   +S GDALR +  + +I  DF+L+SGD VSN
Sbjct:    75 GQIREYIEKSKWNLPSSP-FSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGDVVSN 133

Query:   144 MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYE 203
             + L + L+EH++R++ D NA+MTM+++++ P    H++R  T+     ID  T Q ++Y+
Sbjct:   134 VPLNEVLKEHRKRREDDKNAIMTMVVREASPF---HRTRARTESSVFVIDKKTSQCVHYQ 190

Query:   204 DKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVK 263
                +  K  + +D  +  E+  + + ND  DC IDICS +V +LFT+NFDYQ +R+ FV 
Sbjct:   191 AN-ERGKHYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFDYQDIRKDFVY 249

Query:   264 GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKL 323
             G+L  D++G KI  H    +YAAR+ + ++YD +SKD++ RW YP+VPD     N+    
Sbjct:   250 GVLTSDLLGKKIHCHVAKENYAARVRSLQTYDAISKDVLSRWVYPFVPDSNLL-NQTFSY 308

Query:   324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIW 383
             +R  +Y+  ++  +RS  + + T+IG  TK+G  S +++++IG  CTIGSN  I+ +++W
Sbjct:   309 QRHQIYKEEDVVLARSCIIKARTLIGAYTKVGDASVVANTIIGRNCTIGSNCSIDSAFLW 368

Query:   384 DNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ---Q 440
             ++V+I D C +   I+ + V +     ++ G +++  VVIG+  ++  + +++  +   Q
Sbjct:   369 EDVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKNKRLTTFESHSQ 428

Query:   441 PTVHD 445
              T++D
Sbjct:   429 GTLND 433

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISO

GO:0006413 "translational initiation" evidence=ISO

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|E1BPB3 EIF2B5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 202/601 (33%), Positives = 329/601 (54%)

Query:    28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
             PLQA+L+ADSF  +F PI+ ++P+VLLPL NV +I+YTL +L A GV E FVFCC  + Q
Sbjct:    49 PLQAVLVADSFNRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 108

Query:    88 VIDYLENSEWFSQPNFTV-KTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL 146
             + ++L  S+W    +  V + I S    S GD LR +  + ++  DF+L+ GD +SN+ +
Sbjct:   109 IKEHLLKSKWCRPTSLNVVRIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINI 168

Query:   147 TQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDK 205
             T+AL+EH+ R+K + N +VMTMI K+S PS   H +R   D + +A+D  T Q+L+++  
Sbjct:   169 TRALEEHRLRRKLEKNVSVMTMIFKESSPS---HPTRCHEDNVVVAVDSATNQVLHFQKT 225

Query:   206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265
                 + +  L  +       + +  D  DC+I ICSP+V  LFTDNFDYQ  R  FV+GL
Sbjct:   226 QGLRRFSFPLS-LFQGSGDGVEIRYDLLDCHISICSPQVAQLFTDNFDYQ-TRDDFVRGL 283

Query:   266 LL-DDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKL- 323
             L+ ++I+G +I  H     Y AR+ N   Y  V  D+I+RW YP  P+  F  +      
Sbjct:   284 LVNEEILGNQIHMHVTTKEYGARVSNLHMYAAVCADVIRRWVYPLTPEANFTDSTTQSCT 343

Query:   324 -ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYI 382
               R  +YR  E+     + +    ++G GT IGSN  I++SVIG GC IG NV+++ +++
Sbjct:   344 HSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSNCSITNSVIGPGCHIGDNVVLDQAFL 403

Query:   383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442
             W  V +  G ++   ++CD   +K    LKP  VL+ +VV+G   ++P  S +SL   P 
Sbjct:   404 WQGVRVAAGAQIHQSLLCDNAEVKENVTLKPHCVLTSQVVVGPDIMLPEGSVISL-HPPD 462

Query:   443 VHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSEAHKP-KLGTGGVGYIWSICEGG- 500
               D +++ +++D+S         ADQ   +M     + + P ++G  G GY+W   +   
Sbjct:   463 AEDDEDDGQFSDDSG--------ADQEKEKM---KLKGYNPAEVGVAGQGYLWKAADMNM 511

Query:   501 -QEEEWRHSV----APIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDS---NASE 552
              +EEE R ++      + E+  TE   +MD + EL ++  +      ++  +        
Sbjct:   512 KEEEELRQNLWGLKINMEEESETESERSMDSE-ELDSRAGSPQMDDIKVFQNEVLGTLQR 570

Query:   553 GDDNEDSKDDSVYFEKEVEATFLRAVEENVKV-DHVILE--VNSLRGSLDFT--CSLLMR 607
             G +   S D+ V     ++  +  +++E ++V  HV+LE  +  +   LD    C+LL+ 
Sbjct:   571 GKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDPNRYCTLLIP 630

Query:   608 L 608
             L
Sbjct:   631 L 631

GO:0051716 "cellular response to stimulus" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0014002 "astrocyte development" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691
3rd Layer	2.7.7	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	616
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	5e-95
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	6e-74
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	5e-46
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	4e-37
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	8e-26
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	1e-19
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	8e-18
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	8e-16
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	3e-13
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-12
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	1e-11
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	5e-11
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	2e-10
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	3e-10
TIGR02092	369	TIGR02092, glgD, glucose-1-phosphate adenylyltrans	5e-10
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	5e-10
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	4e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-08
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	1e-08
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	1e-08
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	2e-08
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	2e-08
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	4e-08
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	5e-08
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	6e-08
cd03350	139	cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyri	8e-08
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	8e-08
cd11558	169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	1e-07
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	1e-07
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	2e-07
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	2e-07
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-07
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	2e-07
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	3e-07
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	5e-07
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	6e-07
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	8e-07
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	9e-07
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	1e-06
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	1e-06
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	1e-06
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	1e-06
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-06
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-06
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	2e-06
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	4e-06
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	4e-06
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	5e-06
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	7e-06
PRK11830	272	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-car	7e-06
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-05
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	1e-05
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	1e-05
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	1e-05
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	2e-05
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	2e-05
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	2e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	3e-05
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	3e-05
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	6e-05
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	6e-05
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	7e-05
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	1e-04
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-04
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	3e-04
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-04
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	4e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	6e-04
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	6e-04
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	8e-04
cd02508	200	cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory	9e-04
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	0.001
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	0.001
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	0.001
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	0.001
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	0.002
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	0.002
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	0.002
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	0.002
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	0.002
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	0.003
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	0.003
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	0.003
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	0.003
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	0.003
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.004

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score =  290 bits (744), Expect = 5e-95
 Identities = 105/220 (47%), Positives = 149/220 (67%), Gaps = 6/220 (2%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           LQA++LADSF  +FRP+T E+P+ LLPL NVP+I+YTL +L   GV EVFVFCC+HS Q+
Sbjct: 1   LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQI 60

Query: 89  IDYLENSEWFSQPN--FTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL 146
            +Y+E S+W    +    V  I S +  S GDALR +  + +I GDF+L+SGD VSN+ L
Sbjct: 61  KEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDL 120

Query: 147 TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDK- 205
            + L+EHKER+KKD NA+MTM++K++ P    H++R   +E  +A+DP T +LL+YE+  
Sbjct: 121 KEILEEHKERRKKDKNAIMTMVLKEASPP---HRTRRTGEEFVIAVDPKTSRLLHYEELP 177

Query: 206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245
               +    L   LL  N  + + +D  DC+IDICSP+VL
Sbjct: 178 GSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score =  235 bits (602), Expect = 6e-74
 Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 7/220 (3%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
            QA++LAD F ++F P+T + PK LLP+ NVP+I+YTL WLE AGV EVFV CC HS+ +
Sbjct: 1   FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60

Query: 89  IDYLENSEWFSQ-PNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLT 147
           I++L  S+W S      V  I S    SAGDALRL   + +I  DF+L+S D VSN+ L+
Sbjct: 61  IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSDFLLLSCDLVSNIPLS 120

Query: 148 QALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT--KQLLYYEDK 205
           + L   +ER+KKD NA+ T+ +  + P   T QS+   +E  +A+D  T    LL+YE+ 
Sbjct: 121 ELL---EERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEED 177

Query: 206 ADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245
            D     I + K LL+++P++++  D  DC+I ICSP+VL
Sbjct: 178 LDEDLELI-IRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  165 bits (421), Expect = 5e-46
 Identities = 85/408 (20%), Positives = 156/408 (38%), Gaps = 61/408 (14%)

Query: 28  PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
           P++A++LA  + T+ RP+T +RPK LLP+   P+I Y L  L AAGV E+ +      +Q
Sbjct: 1   PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQ 60

Query: 88  VIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLT 147
           + +Y  + E        +  +     +    AL+   +  +   DF++++GD ++++ L+
Sbjct: 61  IEEYFGDGEGLGVR---ITYVVEKEPLGTAGALKNALDL-LGGDDFLVLNGDVLTDLDLS 116

Query: 148 QALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207
           + L+ HK++      A+ T+ + +    P    S  G  E     D    +++ + +K  
Sbjct: 117 ELLEFHKKKG-----ALATIALTR-VLDP----SEFGVVE----TDDGDGRVVEFREKPG 162

Query: 208 HSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF----TDNFDYQHLRRHFVK 263
             +            +  I+        YI    PEV          +F+ + L      
Sbjct: 163 PEEPP----------SNLINAG-----IYI--FDPEVFDYIEKGERFDFEEELLPA---- 201

Query: 264 GLLLDDIMGYKIFTHEIH-------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFC 316
             L         +  E +              +     D  S         P V      
Sbjct: 202 --LAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGP--IEEPVVII---- 253

Query: 317 GNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVL 376
              A  +    +      +    A +G +TVIG G  IG+  +I +S+I +   IG    
Sbjct: 254 -RSAYIIG--PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSY 310

Query: 377 IEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG 424
           I  S I +N  I     +  V++     +  G V+ PG V+    +  
Sbjct: 311 IGDSIIGENCKIGASLIIGDVVIGINSEILPGVVVGPGSVVESGEIED 358

Length = 358

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score =  132 bits (334), Expect = 4e-37
 Identities = 43/79 (54%), Positives = 55/79 (69%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406
           VIG GT IG  + I +SVIG  C IG NV+I+ SYIWD+V IEDGC + H IV DG ++ 
Sbjct: 1   VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG 60

Query: 407 AGAVLKPGVVLSFKVVIGE 425
            G  + PG ++SF VVIG+
Sbjct: 61  KGCTIPPGSLISFGVVIGD 79

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score =  105 bits (263), Expect = 8e-26
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 13/222 (5%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQ 87
            QA++LA    ++  P+T   PK LLP+ N PMI Y L WLE AG  +V V        +
Sbjct: 1   FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60

Query: 88  VIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLT 147
           +  YL +     +      TI     +   D+LR I     I  DF+++S D ++++ L 
Sbjct: 61  ISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIR--KKIKKDFLVLSCDLITDLPLI 118

Query: 148 QALQEHKERKKKDNNAVMTMIIKK----SKPSPITHQSRLGTDELFMAIDPNTKQLLYYE 203
           + +  H     + ++A +T+++      S+      +S+   +   + +D  T++LL+  
Sbjct: 119 ELVDLH-----RSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFIT 173

Query: 204 DKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245
            + D  +    L K LL  +P +++     D ++ I    VL
Sbjct: 174 SEEDLDEDLE-LRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406
           +IG  T IG N+ I +SVIG+   IG  V I  S + DNV I     +   I+ D  ++ 
Sbjct: 1   LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIG 60

Query: 407 AGAVLKPGVVLSFKVVIGE 425
               +    ++   VV+ +
Sbjct: 61  ENVRVVNLCIIGDDVVVED 79

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score = 82.2 bits (204), Expect = 8e-18
 Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 11/142 (7%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSK-QVI 89
           A++LA    T+ RP+T  RPK LLP+   P++ Y +  L  AG+ E  +    +   Q+ 
Sbjct: 1   AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDE-IILVVGYLGEQIE 59

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQA 149
           +Y  +   F      ++ +     +    A+R   +  +   DF++++GD ++++ L++ 
Sbjct: 60  EYFGDGSKF---GVNIEYVVQEEPLGTAGAVRNAEDF-LGDDDFLVVNGDVLTDLDLSEL 115

Query: 150 LQEHKERKKKDNNAVMTMIIKK 171
           L+ H+E+      A  T+ +K+
Sbjct: 116 LRFHREKG-----ADATIAVKE 132

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 72.2 bits (178), Expect = 8e-16
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406
           ++G  T++G  + I  SVIG  C IG  V I    I DNV IEDGC L + I+ +G ++ 
Sbjct: 1   LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60

Query: 407 AGAVLKPGVVLSFKVVIGERFVVPAHSK 434
               LK         ++G  + V A ++
Sbjct: 61  EKCKLK-------DCLVGSGYRVEAGTE 81

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 85/448 (18%), Positives = 148/448 (33%), Gaps = 115/448 (25%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           AI+LA    ++  P+T +R K  +P      +I++ L+    +G+  + V     S  + 
Sbjct: 8   AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLN 67

Query: 90  DYLEN-SEWFSQP---NFTV---KTIESHNIISAGDA------LRLIYEQNVIHGDFVLI 136
           D++     W          +   +  E       G A      L +I   +    ++VLI
Sbjct: 68  DHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDP---EYVLI 124

Query: 137 -SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPN 195
            SGD +  M  +  L  H E       A +T+     K  P    SR G     M +D N
Sbjct: 125 LSGDHIYKMDYSDMLDFHIES-----GADVTVA---VKEVPREEASRFGV----MNVDEN 172

Query: 196 TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ 255
            + + + E  AD               N   S+       YI          F  +   +
Sbjct: 173 GRIIEFVEKPADGPP-----------SNSLASMGI-----YI----------FNTDLLKE 206

Query: 256 HLRRH---------FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT 306
            L            F K ++   +   K++ +E    Y   +    SY   + D++    
Sbjct: 207 LLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSG-YWRDVGTIDSYYEANMDLLS--- 262

Query: 307 YPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIG 366
                      +R   +     Y   +                   K  ++S++S+S++ 
Sbjct: 263 ---PQPELNLYDRNWPI-----YTKNKNL--------------PPAKFVNDSEVSNSLVA 300

Query: 367 EGC---------------TIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411
            GC                IG   +IE S I  +V I +G  LR  I+   V++  G V+
Sbjct: 301 GGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI 360

Query: 412 ---------KPGVVLSFKVVIGERFVVP 430
                    K        VV+ +  V+ 
Sbjct: 361 GGDKPEEDRKRFRSEEGIVVVPKGMVIK 388

Length = 393

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 341 QVGSFTVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGSYIWDNV-----IIEDGCEL 394
            +G+   I    KIG N KI  +V I EG TI  +V I  + ++ N       I    EL
Sbjct: 6   IIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWEL 65

Query: 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
           +   V  G  + A A + PG      V IGE  +V A + V
Sbjct: 66  KGTTVKRGASIGANATILPG------VTIGEYALVGAGAVV 100

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           +A++LA    T+ RP+T  RPK L+P+   P+I++ L  L AAG+  + V     + Q+ 
Sbjct: 1   KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60

Query: 90  DYLENSEWFSQPNFTVKTI-ESHNII-SAG---DALRLIYEQNVIHGDFVLISGDTVSNM 144
            +L +S +       +    E   ++ + G    AL L+ +       F++++GD + + 
Sbjct: 61  AHLGDSRF----GLRITISDEPDELLETGGGIKKALPLLGD-----EPFLVVNGDILWDG 111

Query: 145 LLTQALQEHKER 156
            L   L  H  R
Sbjct: 112 DLAPLLLLHAWR 123

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 64.5 bits (158), Expect = 5e-11
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           ++A++LA    T+ RP+T  RPK +LP+   P++ + +  L  AG+ +         ++V
Sbjct: 1   MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
            +Y  +    S+    ++ +     +   DAL     +  +  +F++++GD    +LL  
Sbjct: 61  REYFGDG---SRGGVPIEYVVQEEQLGTADALG--SAKEYVDDEFLVLNGD----VLLDS 111

Query: 149 ALQEHKERKKKDNNAVMT 166
            L E   R +    AV+ 
Sbjct: 112 DLLERLIRAEAPAIAVVE 129

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 60.5 bits (148), Expect = 2e-10
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH 396
            +  +G   VIG G  IG        VIG G  IG  V+I +   I  NV I +GC    
Sbjct: 6   ENVSIGPNAVIGEGVVIGDG-----VVIGPGVVIGDGVVIGDDCVIHPNVTIYEGC---- 56

Query: 397 VIVCDGVIMKAGAVL 411
            I+ D VI+ +GAV+
Sbjct: 57  -IIGDRVIIHSGAVI 70

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 48/239 (20%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVI 89
           A++LA    T+ R +  + PK L P+   P + Y L +L   G++ + V    + ++Q+ 
Sbjct: 1   AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRI-VLSVGYLAEQIE 59

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAG---DALRLIYEQNVIHGDFVLISGDTVSNMLL 146
           +Y  +        + V  IE   + + G   +AL  + E       F++++GDT  ++ L
Sbjct: 60  EYFGDGYRGGIRIYYV--IEPEPLGTGGAIKNALPKLPEDQ-----FLVLNGDTYFDVDL 112

Query: 147 TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKA 206
              L   +      + A  TM +++         SR G     + +D + + + + E   
Sbjct: 113 LALLAALRA-----SGADATMALRRVP-----DASRYGN----VTVDGDGRVIAFVEKGP 158

Query: 207 DHSKGTI-----CLDKMLLAE----NPS-------ISLHNDKQDCY------IDICSPE 243
             + G I      L K +LAE      S         +   +   +      IDI  PE
Sbjct: 159 GAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPE 217

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 75/401 (18%), Positives = 152/401 (37%), Gaps = 70/401 (17%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAAGVAEVFVFCCAHSKQ-V 88
           AI+     +    P+T  RP   LP      +I++ L+ +  AG+  VF+F     +Q +
Sbjct: 5   AIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSL 64

Query: 89  IDYLEN-SEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH------------GDFVL 135
            D+L +  EW       +        +   +    + E    +             ++ +
Sbjct: 65  FDHLGSGREW------DLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTV 118

Query: 136 ISG-DTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP 194
           +     V N+ L   L+ H+E  K      +T++ KK KP+                   
Sbjct: 119 VLNSHMVCNIDLKAVLKYHEETGKD-----ITVVYKKVKPA---------------DASE 158

Query: 195 NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY 254
               L + E     S G     +    E  +ISL     D YI + +  ++ L  +    
Sbjct: 159 YDTILRFDESGKVKSIGQNLNPE----EEENISL-----DIYI-VSTDLLIELLYECIQR 208

Query: 255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVK 314
             L    ++ L+ +++    I  +E ++ Y A I++ +SY   + D++     P      
Sbjct: 209 GKLTS--LEELIRENLKELNINAYE-YTGYLANINSVKSYYKANMDLLD----PQNFQSL 261

Query: 315 FCGNRA---TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI 371
           F  ++    TK++        E  +  ++ V +  +I          K+ +S++  G  +
Sbjct: 262 FYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII--------EGKVENSILSRGVHV 313

Query: 372 GSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412
           G + LI+   I    +I +G  L +VI+   V+++    + 
Sbjct: 314 GKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 356 SNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415
           S   + +SV+  G  +GS  ++E S I  NV I     +R  I+   V++  G V+    
Sbjct: 22  SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP 81

Query: 416 VLS---FKVVIGERFVVPAHSKV 435
                 F V      VV     +
Sbjct: 82  EEDRARFYVTEDGIVVVGKGMVI 104

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 58.4 bits (142), Expect = 4e-09
 Identities = 68/315 (21%), Positives = 106/315 (33%), Gaps = 81/315 (25%)

Query: 120 LRLIYEQNVIHGDFVLI-SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT 178
           L LI + +    ++VLI SGD +  M   + L  H E       A + +        P  
Sbjct: 103 LDLIEDYDP---EYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPV--------PRK 151

Query: 179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYID 238
             SR G     M +D + + + + E  A+       +    LA     S+       YI 
Sbjct: 152 EASRFGV----MQVDEDGRIVDFEEKPAN-PPSIPGMPDFALA-----SMGI-----YI- 195

Query: 239 ICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKI---FTHEI-------HSSYAARI 288
                        FD   L+      LL +D    +    F  +I        S  A   
Sbjct: 196 -------------FDKDVLKE-----LLEEDADDPESSHDFGKDIIPRALEEGSVQAYLF 237

Query: 289 DNY-------RSY-----DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ 336
             Y        S+     D+VS           VP      +R   +     +       
Sbjct: 238 SGYWRDVGTIDSFWEANMDLVSV----------VPPFD-LYDRKWPIYTYNEFLPPAKFV 286

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH 396
              AQV   +++  G  I   + +S SV+G    IGS   +E S I  +V I  G  +R+
Sbjct: 287 DSDAQVVD-SLVSEGCIISGAT-VSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN 344

Query: 397 VIVCDGVIMKAGAVL 411
            I+   V +  G V+
Sbjct: 345 AIIDKNVRIGEGVVI 359

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 55.1 bits (134), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 353 KIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGA 409
           KIG N  I  ++VIGEG  IG  V+I  G  I D V+I D C +  +V + +G I+    
Sbjct: 3   KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRV 62

Query: 410 VLKPGVVL 417
           ++  G V+
Sbjct: 63  IIHSGAVI 70

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV 397
              +G   VIG G +IG N  I    VIG+   IG     +GS I  NV+I +  +L   
Sbjct: 109 GVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIG-----DGSRIHPNVVIYERVQLG-- 161

Query: 398 IVCDGVIMKAGAVL 411
                VI+ +GAV+
Sbjct: 162 ---KNVIIHSGAVI 172

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           ++A++L   + T+ RP+TL  PK L+   N PMI + +  L  AGV E+ +      + +
Sbjct: 1   MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD----FVLISGDTVSNM 144
           + +L+  E   +    +K   S      G A  L   ++++  D    FVL S D + + 
Sbjct: 61  VPFLKEYE--KKLG--IKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNS-DVICDF 115

Query: 145 LLTQALQEHKERKKK 159
            L + L  HK+   +
Sbjct: 116 PLAELLDFHKKHGAE 130

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           +VIG   KIG   KI++ VI +  TI     +E   I +  +I + C+L+  +V  G  +
Sbjct: 17  SVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRV 76

Query: 406 KAGAV 410
           +AG  
Sbjct: 77  EAGTE 81

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 19/98 (19%)

Query: 354 IGSNSKISDSVIGEGC---------------TIGSNVLIEGSYIWDNVIIEDGCELRHVI 398
           I  N+K+ +S++ EGC                +G   +++ S I     I +   +   I
Sbjct: 285 IAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAI 344

Query: 399 VCDGVIMKAGAVLKPGVVLSFKV-VIGERFVVPAHSKV 435
           + +  ++  G ++  G      + VIGE  V+   + +
Sbjct: 345 IGENAVIGDGVIIGGG---KEVITVIGENEVIGVGTVI 379

Length = 380

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 55.1 bits (134), Expect = 4e-08
 Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 25/96 (26%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHV 397
           SA +     IG G  IG N+     VIG G  IG  V+I  G+ I D V I   C     
Sbjct: 106 SAVIDPSAKIGEGVSIGPNA-----VIGAGVVIGDGVVIGAGAVIGDGVKIGADC----- 155

Query: 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433
                        L   V +   V IG R ++  HS
Sbjct: 156 ------------RLHANVTIYHAVRIGNRVII--HS 177

Length = 343

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           VIG  T I     IS D+ IGEGCTI   V+I+G  I D+V ++ G  L   +V D V +
Sbjct: 270 VIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAI 329

Query: 406 KAGAVLKPGVVLSFKVVIG-----ERFVVPAHSKVSLL 438
              A L+PG  LS  V IG     ++ V+   SK S L
Sbjct: 330 GPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHL 367

Length = 459

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 19/117 (16%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVID 90
           AI+LA    ++ RP+T +RPK LL +   P++   +  L+ AG+ ++ +    + K+ I+
Sbjct: 1   AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVI-VTGYKKEQIE 59

Query: 91  YLENSEWFSQPNFTVKTIESH------NIISAGDALRLIYEQNVIHGDFVLISGDTV 141
            L            +K + +       NI S   A       + +  DF+L+ GD V
Sbjct: 60  ELLKK------YPNIKFVYNPDYAETNNIYSLYLAR------DFLDEDFLLLEGDVV 104

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 22/107 (20%)

Query: 347 VIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCELRH 396
            +  GT + S + + S + IG+   + +  +I G           I D+V I   CE   
Sbjct: 33  YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCE--- 89

Query: 397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS 436
             V +GVI+  GAVL  GVVL+    I +R         VP  S V 
Sbjct: 90  --VVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVVV 134

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. Length = 139

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVID 90
            ++LA    T+ RP+T  RPK L+P+   P+I Y +  L  AG+ ++ +      +++ +
Sbjct: 3   GLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKE 62

Query: 91  YLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQAL 150
            L +   F     T   I     +    A+ L     +    FV+  GD +    ++  +
Sbjct: 63  ALGDGSRFGV-RITY--ILQEEPLGLAHAV-LAARDFLGDEPFVVYLGDNLIQEGISPLV 118

Query: 151 QEHKERK 157
           ++  E  
Sbjct: 119 RDFLEED 125

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 561 DDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLR 595
           DD   F  EV  +  RA+EEN  VD+ ILE+NSLR
Sbjct: 1   DDESDFHSEVVESLERALEENHSVDNAILEINSLR 35

eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 169

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 52.0 bits (126), Expect = 1e-07
 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 28/101 (27%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           TVIG    IG N  I DS IG+G  I ++ +IEG+      +I +G              
Sbjct: 34  TVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGA------VIGNGA------------- 74

Query: 406 KAG--AVLKPGVVLSFKVVIGERFV------VPAHSKVSLL 438
             G  A L+PG VL   V IG  FV      +   SK + L
Sbjct: 75  TVGPFAHLRPGTVLGEGVHIGN-FVEIKKSTIGEGSKANHL 114

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 51.6 bits (125), Expect = 2e-07
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 364 VIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVV 422
            IGE  +IG N +I      + V+I DG  +   V++ DGV++    V+ P V +    +
Sbjct: 3   KIGENVSIGPNAVIG-----EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCI 57

Query: 423 IGERFVVPAHS 433
           IG+R ++  HS
Sbjct: 58  IGDRVII--HS 66

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406
           V+  G ++GS S + DSVI     IG N +I  + I  NV+I DG     +         
Sbjct: 30  VLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGV---VIGGDPEEDRA 86

Query: 407 AGAVLKPGVVLSFKVVIGERFVV 429
              V + G+     VV+G+  V+
Sbjct: 87  RFYVTEDGI-----VVVGKGMVI 104

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL--R 395
           +  +G   VIG G  IG N  I + +VIGE   IG     +G+ I  NV I     +   
Sbjct: 117 NVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIG-----DGTVIHPNVTIYHNVVIGNN 171

Query: 396 HVIVCDGVIMKAGAVLKPGVVLSFK------VVIGER 426
            +I    VI   G       +   K      V+IG+ 
Sbjct: 172 VIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD 208

Length = 338

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 347 VIGYGTKIGSNSKISDS---VIGEGCTIGSNVLIEGS---YIWDNVIIEDGCELRHVIVC 400
            IG    IG    IS      IG+   IG NV I             IE G     +++ 
Sbjct: 3   SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIG 62

Query: 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKV 435
           D V + A  V+ PGV +    V+G   VV    P +S V
Sbjct: 63  DDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIV 101

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 346 TVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGSY-IWDNVIIEDGCEL-RHVIVCDG 402
           TVIG G KI +  +I  +V IGE C I   V I GS  I   VII     +  H+ + DG
Sbjct: 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDG 284

Query: 403 VIMKAGA 409
           V + A +
Sbjct: 285 VTIGARS 291

Length = 338

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 21/109 (19%)

Query: 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII---ED 390
           I+    A++G    I +GT I         VIGE   IG N       I+  V +     
Sbjct: 3   IDIHPGAKIGPGLFIDHGTGI---------VIGETAVIGDNCT-----IYQGVTLGGKGK 48

Query: 391 GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKV 435
           G   RH  + D V++ AGA +   + +   V IG   VV    PA+S V
Sbjct: 49  GGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTV 97

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395
           V+  G ++G  S + DSVI  G  IG NV+IE + I +N +I DG  + 
Sbjct: 310 VLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIG 358

Length = 380

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 342 VGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVI--IEDGCELRHVI 398
           +G    IG    I     I    IG+   +G NV I   S+  D V   I        V 
Sbjct: 70  IGDLCFIGVNVVILVGEGI---TIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVT 126

Query: 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429
           + + V + AGAV+ PGV +    VIG   VV
Sbjct: 127 IGEDVWIGAGAVILPGVTIGEGAVIGAGSVV 157

Length = 190

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 347 VIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE-LRHVIVC 400
            IG  T I   S +       ++IG+  T+G   ++ G  I DN +I  G   L   ++ 
Sbjct: 40  RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIG 99

Query: 401 DGVIMKAGAVLKPGVVL-SFKVVIGERFVVPA 431
            G I+ AG+++ PG V+    +V G     PA
Sbjct: 100 KGSIVAAGSLVPPGKVIPPGSLVAG----SPA 127

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 352 TKIGSNSKISDSV-IGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409
             I   + I  +  IG+  +IG NV+I  G  I +NV+I  G      ++ + V +  G 
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGA-----VIGENVKIGDGT 154

Query: 410 VLKPGVVLSFKVVIGERFVVPAHSKV 435
           V+ P V +   VVIG   ++ + + +
Sbjct: 155 VIHPNVTIYHNVVIGNNVIIHSGAVI 180

Length = 338

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 33/116 (28%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIW 383
           S SA +G   VI  G  I  +++I              D VIG+   I   V++ G    
Sbjct: 94  SPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSG---- 149

Query: 384 DNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKV 435
             V I +G  +       G    AGA +  GV +    +IG   VV    P  S V
Sbjct: 150 -GVTIGEGAFI-------G----AGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVV 193

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 35/173 (20%), Positives = 79/173 (45%), Gaps = 25/173 (14%)

Query: 40  TKFRPITLERPKVLLPLVNVPMINYTLAWL-EAAGVAEVFVFCCAHSKQVIDYLENSEWF 98
           T+FRP++L+ PK L P+   PMI++ +    +   + EV +          D++ +++  
Sbjct: 12  TRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-- 69

Query: 99  SQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD----FVLISGDTVSNMLLTQALQEHK 154
            + N  ++ ++ +     G A  L + ++ I       F +++ D   +  L + L+ HK
Sbjct: 70  QEFNVPIRYLQEYK--PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHK 127

Query: 155 ERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAI--DPNTKQLLYYEDK 205
           +       A  T++  ++     ++         +  I  DP+T ++L+Y +K
Sbjct: 128 KH-----GASGTILGTEASREQASN---------YGCIVEDPSTGEVLHYVEK 166

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 32/116 (27%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIW 383
           S SA +G  TVI  G  I  + +I              D VIG+   I   V + G    
Sbjct: 88  SPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG---- 143

Query: 384 DNVIIEDGCE-------LRHVIVCDGVIMKAGA-VLKPGVVLSFKVVIGERFVVPA 431
             V+I +G         ++ V +  G ++ AGA V K   +    VV+G    VPA
Sbjct: 144 -GVVIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVTKD--IPDGGVVVG----VPA 192

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 347 VIGYGTKIGSNSKISDSV-IGEGCTIGSNVLI---EGSYIWDNVIIEDGCEL-RHVIVCD 401
            IG G KI   + I   V IG+   IG   +I    G    +  II D  E+  + ++  
Sbjct: 2   FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61

Query: 402 GVIMKAGAVLKPGVVL 417
           GV +   AV+  G V+
Sbjct: 62  GVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL---------RHVIVCDGVIMKAGAVLK 412
             IGEG  I    +I G   I DNV I  G  +            I+ D V + A AV+ 
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 413 PGVVLSFKVVIGERFVV 429
            GV +    VIG   VV
Sbjct: 61  GGVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           ++ ++LA    T+ RP+T   PK LLP+ + PMI Y L  L  AG+ ++ +      K  
Sbjct: 1   MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNML--- 145
              L         + T       + +    A+ LI E  V   DFVL  GD   N+    
Sbjct: 61  FKELLGDGSDFGVDITYAVQPEPDGL--AHAV-LIAEDFVGDDDFVLYLGD---NIFQDG 114

Query: 146 LTQALQEHKERKK 158
           L++ L+   E   
Sbjct: 115 LSELLEHFAEEGS 127

Length = 286

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNV-LIEGSYIWDNVIIED 390
           +++     IG+NS I DS+IG+   IG NV ++    I D+V++ED
Sbjct: 34  SILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 10/116 (8%)

Query: 27  QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSK 86
            P++A++LA  F ++  P   + PK L+ +    +I  T+  L  AG+ E  V    +  
Sbjct: 2   HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRA 58

Query: 87  QVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE-QNVIHGDFVLISGDTV 141
            +++         +  F  K + + +     +    +   ++ + G F+L+  D V
Sbjct: 59  DLVEEFLK-----KYPFNAKIVINSD-YEKTNTGYSLLLAKDYMDGRFILVMSDHV 108

Length = 239

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSK-QV 88
           +A++LA    T+ RP+T  RPK L+P+ N P++ Y +  L  AG+ ++ +     +  ++
Sbjct: 1   KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
            + +   E F     T   I     +    A+    +  +   DFV+  GD     L+  
Sbjct: 61  KEIVGEGERFGA-KITY--IVQGEPLGLAHAVYTARDF-LGDDDFVVYLGDN----LIQD 112

Query: 149 ALQEHKERKKKDNNAVMTMIIKKSKPS 175
            +    +  ++ +   + ++ K   P+
Sbjct: 113 GISRFVKSFEEKDYDALILLTKVRDPT 139

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395
             SA V     IG GT I + + I  D  IG+   I +  ++E      + +I D   + 
Sbjct: 82  HPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVE-----HDCVIGDYVHI- 135

Query: 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
                            PGV LS  VVIGE   + A + +
Sbjct: 136 ----------------APGVTLSGGVVIGEGVFIGAGATI 159

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|236996 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 344 SFTVIG-Y---GTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSY--IWDN-VIIEDGCEL- 394
           S+  IG Y   GT + + + + S + IG+   +   V I G    +  N VIIED C + 
Sbjct: 127 SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIG 186

Query: 395 -RHVIVCDGVIMKAGAVLKPGVVLS-----FKVVIGERFV--VPAHSKV 435
            R  +V +GVI++ G+VL  GV L      +    GE     VPA S V
Sbjct: 187 ARSEVV-EGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVV 234

Length = 272

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 46.2 bits (111), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 17/85 (20%)

Query: 346 TVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-------RHV 397
           TVIG GTKI +  +I+ +  IGE C I + V I GS       I D   +        H+
Sbjct: 115 TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-----TTIGDNVIIGGQVGIAGHL 169

Query: 398 IVCDGVIMKAGAV----LKPGVVLS 418
            + DGV++ AG+     + PG  +S
Sbjct: 170 TIGDGVVIGAGSGVTSIVPPGEYVS 194

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 338 RSAQVGSFTVIGYGTKIGSNSKISDS-------VIGEGCTIGSNVLIEGSYIWDNVIIED 390
            +  +G + ++  G  I    K            IG+   IG N ++  + I   V I  
Sbjct: 41  ATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100

Query: 391 GCEL-RHVIVCDGVIMKAGAVLKPG-VVLSFKVVIG 424
            C + R  I+ D V +  G V+ P  V+  + VV G
Sbjct: 101 NCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG 136

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           +++  G+ I S + + +SV+     + S   +E S + D V I  G  +R  I+   V++
Sbjct: 316 SLVSAGSII-SGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVV 374

Query: 406 KAGA 409
             GA
Sbjct: 375 PPGA 378

Length = 407

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 36/117 (30%)

Query: 342 VGSFTVIGYGT---------KIGSNSKISDSV-----------IGEGCTIGSNVLIEGSY 381
           +G+   I  G          +IG+ + I D V           IG+  TIG   ++ G  
Sbjct: 32  IGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCT 91

Query: 382 IWDNV------IIEDGCELRHVIVCDGVIMKAGAVLKPGVVL-SFKVVIGERFVVPA 431
           I DNV       + DG       + DG I+ AGA++ PG  +    +V+G     PA
Sbjct: 92  IGDNVLIGMGATVLDGAV-----IGDGSIVGAGALVTPGKEIPGGSLVVG----SPA 139

Length = 176

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG 379
           TVIG    IG N  I    +IG+   IG+ V+I G
Sbjct: 2   TVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 47.1 bits (113), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII 388
           TVIG    IG  S+I DS IG+G TI ++V+ E S + DNV +
Sbjct: 284 TVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEE-SKVGDNVTV 325

Length = 458

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
          + AI+LA    ++F P+T   PK LL +   P+I   +  L  AG+ ++      + K+ 
Sbjct: 1  MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDI-TIVVGYLKEQ 59

Query: 89 IDYL 92
           +YL
Sbjct: 60 FEYL 63

Length = 231

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 362 DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
            + IG+G TIG NV+I  G  I +NVII  G      ++ D V++  G+ + P VV+  +
Sbjct: 103 SAKIGDGVTIGPNVVIGAGVEIGENVIIGPGV-----VIGDDVVIGDGSRIHPNVVIYER 157

Query: 421 VVIGER 426
           V +G+ 
Sbjct: 158 VQLGKN 163

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA-HSKQV 88
           AI+LA    T+  P+T    K L+P+++  PMI YTL+ L  AG+ E  V C   H   V
Sbjct: 2   AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61

Query: 89  IDYL-ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDF---VLI-SGDTVSN 143
            + L + S++  Q  + ++  E         A+ L    + +  D    VL+  GD +  
Sbjct: 62  AEQLGDGSKFGLQVTYALQP-EPRGT---APAVALA--ADFLGDDDPELVLVLGGDHIYR 115

Query: 144 MLLTQALQEHKERKKKD 160
           M   +A+Q+ + +    
Sbjct: 116 MDFEEAVQKARAKAADG 132

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI- 89
            +++A    T+ RP+T   PK +L +   P++   +    A G    F     +  ++I 
Sbjct: 1   VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRN-FYISVNYLAEMIE 59

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQA 149
           DY  +   F      +  +     +    AL L+ E+      F++++GD ++N+     
Sbjct: 60  DYFGDGSKF---GVNISYVREDKPLGTAGALSLLPEK--PTDPFLVMNGDILTNLNYEHL 114

Query: 150 LQEHKERKKKDNNAVMTM 167
           L  HKE     NNA  T+
Sbjct: 115 LDFHKE-----NNADATV 127

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII 388
           TVIG    IG  S I DSVIG+   I +  +IEGS + +   +
Sbjct: 287 TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATV 329

Length = 460

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 360 ISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSF 419
             DS++  G  I S   +  S +  NV++E G E+   ++ DGV +  GAV++   +L  
Sbjct: 313 AQDSLVSAGSII-SGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDK 370

Query: 420 KVVIGER 426
            VV+   
Sbjct: 371 NVVVPPG 377

Length = 407

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 34/97 (35%)

Query: 341 QVGSFTVIGYGTKIGSNSKI-------SDSVIGEGCTIGSNVLIEGS----YIWD----- 384
            +G+  VIG G KIG++ ++           IG    I S  +I GS    +  D     
Sbjct: 138 VIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI-GSDGFGFANDRGGWV 196

Query: 385 ------NVIIEDGCE-----------LRHVIVCDGVI 404
                  VII D  E           L   ++ +GV 
Sbjct: 197 KIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 233

Length = 343

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 334 IEQS----RSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVI 387
           I        +  +G+  VIG   KIG  + I  +  I     IG+NV+I  G+ I  +  
Sbjct: 126 IGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGF 185

Query: 388 IEDGCELRHV 397
              G  +  V
Sbjct: 186 GYAGTAIGWV 195

Length = 338

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 361 SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSF 419
            DS + EG  I +++  +     D V I DG  L    IV  GV+M  G+VL P    S 
Sbjct: 621 DDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGP---DSL 677

Query: 420 KVVIGERFVVPAHSK 434
            V+ GE   VPAH++
Sbjct: 678 -VMKGEE--VPAHTR 689

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVI 398
           + ++G    I     +    KI     G+   IG   +I+ S I  NV+I+    L    
Sbjct: 261 TVEIGRDVEIDPNVILEGKVKI-----GDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSE 315

Query: 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428
           + +G  +   A L+PG VL   V IG  FV
Sbjct: 316 IGEGCDVGPFARLRPGSVLGAGVHIGN-FV 344

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 42.4 bits (101), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 18/86 (20%)

Query: 346 TVIGYGTK------IGSNSKISDSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR-HV 397
           TVIG G K      I  N       IG    I + V I GS  I    +I     +  H+
Sbjct: 226 TVIGEGVKIDNLVQIAHNVV-----IGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHL 280

Query: 398 IVCDGVIMKAGA-----VLKPGVVLS 418
            + DGV + A +     + +PG   S
Sbjct: 281 EIGDGVTITAMSGVTKSIPEPGEYSS 306

Length = 343

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 16/68 (23%)

Query: 340 AQVGSFTVIGYGTKIGSNSKISDSV---------------IGEGCTIGSNVLIEG-SYIW 383
            ++    VI     IG N  I                   IG+   IG+N +I G   I 
Sbjct: 7   VKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIG 66

Query: 384 DNVIIEDG 391
           DN +I  G
Sbjct: 67  DNAVIGAG 74

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 351 GTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYI 382
           GT IG N  I  + VIG G  IG NV+I  G  I
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVI 34

Length = 36

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 13/117 (11%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64

Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
             L  + S+W     + V+         + D L    +I E+ +   D  L+ GD +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGGDDCALVLGDNI 113

Length = 292

>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 36/163 (22%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVP----MINYTLAWLEAAGVAEVFVFCCAHSK 86
           AI+LA    T+  P+T +R K   P V       +I++ L+ +  +G+  V V     S+
Sbjct: 1   AIILAGGEGTRLSPLTKKRAK---PAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSR 57

Query: 87  QVIDYLENS-EW-----------FSQPNFTVKTIESHNIISAGDALR----LIYEQNVIH 130
            + D+L +  EW                               DA+      I   +   
Sbjct: 58  SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTA----DAIYQNLDYIERSDP-- 111

Query: 131 GDFVLI-SGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172
            ++VLI SGD + NM   + L  H E     + A +T++ K S
Sbjct: 112 -EYVLILSGDHIYNMDYREMLDFHIE-----SGADITVVYKAS 148

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 48  ERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS--EWFSQ--PNF 103
           + PKVL PL   PM+ + L    A G   + V     ++QV   L N   E+  Q     
Sbjct: 15  DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQLG 74

Query: 104 T---VKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKD 160
           T   VK          GD L       V++GD  LI+ +T+  +L          R+   
Sbjct: 75  TGHAVKQALPALKDFEGDVL-------VLYGDVPLITPETLQRLL-------EAHREAGA 120

Query: 161 NNAVMTMIIK 170
           +  V+T  ++
Sbjct: 121 DVTVLTAELE 130

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII 388
           TVIG G +IG  S I +S IGE  T+    ++  S I D V I
Sbjct: 281 TVIGSGCRIGPGSLIENSQIGENVTV-LYSVVSDSQIGDGVKI 322

Length = 450

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 354 IGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410
           I S + +  SV+     + S   +E S +  +V +   C LR  ++  G ++  G V
Sbjct: 335 IISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMV 391

Length = 425

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 24/156 (15%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           +A++LA    T+    T  RPK ++ +   P++ + +      G+ + F+ CC +   VI
Sbjct: 1   KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGIND-FIICCGYKGYVI 59

Query: 90  -DYLENSEWFSQPNFTV----KTIESHN---------IISAGDAL----RLIYEQNVIH- 130
            +Y  N  +    + T      T+E H+         ++  G++     RL   +  +  
Sbjct: 60  KEYFANY-FLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD 118

Query: 131 GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMT 166
             F    GD V+++ +   +  H++  KK   A +T
Sbjct: 119 EAFCFTYGDGVADIDIKALIAFHRKHGKK---ATVT 151

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 353 KIGSNSKISDSVIGEGCTIGSNVLIEGSYIW------DNVIIEDGCELRHVIVCDGVIM 405
            +G  +KI +SVI     IG + +IE SYI       + V+I D  E+ H IV D  ++
Sbjct: 256 VVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD-AEVEHSIVLDESVI 313

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI- 89
          A++ A    T+F P T   PK +LP+V+ P+I Y +    AAG+ E  +      K+ I 
Sbjct: 7  AVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGI-EEILIVTGRGKRAIE 65

Query: 90 DYLENS 95
          D+ + S
Sbjct: 66 DHFDTS 71

Length = 291

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 362 DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420
              I     IG   ++  G+YI   VII  GCE+              A ++   VL   
Sbjct: 11  GVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGP-----------NAYIRGYTVLGDG 59

Query: 421 VVIG 424
            V+G
Sbjct: 60  CVVG 63

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 32 ILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFV 79
          I+LA    T+  PIT    K LLP+ + PMI Y L+ L  AG+ ++ +
Sbjct: 3  IILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 50

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 18/112 (16%)

Query: 353 KIGSNSKISDSV-----------IGEGCTIGSNVLIEGSYIWDNVIIEDGCE-LRHVIVC 400
            IG  S + ++V           IG+  TIG N ++ G+ + + VI+  G   L    + 
Sbjct: 41  YIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIG 100

Query: 401 DGVIMKAGAVLKPGVVL-SFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELE 451
           D VI+ AGAV+ PG  +  + +V+G    VPA   V  L +  +    +  E
Sbjct: 101 DHVIIGAGAVVTPGKEIPDYSLVLG----VPAKV-VRKLTEEEIEWIKKNAE 147

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 338 RSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391
            +  +G   VIG    IG  S+I  + VI E   +G NV+I        VI  DG
Sbjct: 126 ENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSG----AVIGSDG 176

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 338 RSAQVGSFTVIGYGTKIGSNS-------------KISDSV-IGEGCTIGSNVLI-----E 378
            +  +G+  +I  G  IG++                   V IG+   IG+N  I     +
Sbjct: 164 HNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALD 223

Query: 379 GSYIWDNVIIEDGCELRH-VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
            + I + V I++  ++ H V + +  I+     +   V +   V+IG +  +  H ++
Sbjct: 224 DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEI 281

Length = 338

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 346 TVIGYGTKIGSNSKI-------SDSVIGEGCTIGSNVLIEGSYIWDNV-IIEDGCELRHV 397
           T I Y  +IG ++ I         + IGE C IG    I    I +NV II   CE    
Sbjct: 250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKS-- 307

Query: 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436
           ++ D V +   + L+ G VL   V IG  FV    S + 
Sbjct: 308 VIEDDVSVGPFSRLREGTVLKKSVKIGN-FVEIKKSTIG 345

Length = 448

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA 407
           +KI  + +I+DS+I  GC +     IE S +     I +G E+      D V+M A
Sbjct: 306 SKI-EDCRITDSIISHGCFL-RECKIEHSVVGLRSRIGEGVEIE-----DTVMMGA 354

Length = 436

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 25/100 (25%)

Query: 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII---EDGCELRH 396
           A++G    I +GT +         VIGE   IG +V      I+  V +         RH
Sbjct: 74  AKIGRGLFIDHGTGV---------VIGETAVIGDDV-----TIYHGVTLGGTGKESGKRH 119

Query: 397 VIVCDGVIMKAGA-VLKPGVVLSFKVVIGERFVVPAHSKV 435
             + +GV + AGA +L         + IG+   + A S V
Sbjct: 120 PTIGNGVYIGAGAKILGN-------IEIGDNAKIGAGSVV 152

Length = 194

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 362 DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH 396
            +VIGE   IG NV+I  G  I DNVII  G  +  
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	616
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	100.0
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	100.0
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.97
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.97
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.97
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.97
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.97
PRK10122	297	GalU regulator GalF; Provisional	99.97
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.96
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.96
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.96
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.96
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.96
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.96
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.96
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.95
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.95
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.95
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.95
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.95
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.94
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.92
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.9
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.9
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.87
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.86
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.82
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.81
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.8
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.78
PRK11132	273	cysE serine acetyltransferase; Provisional	99.77
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.76
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.71
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.71
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.65
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.64
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.61
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.6
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.6
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.6
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.59
PRK13627	196	carnitine operon protein CaiE; Provisional	99.57
PLN02472	246	uncharacterized protein	99.55
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.55
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.55
PLN02296	269	carbonate dehydratase	99.54
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.53
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.53
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.52
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.52
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.51
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.51
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.5
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.49
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.48
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.47
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.47
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.46
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.46
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.46
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.45
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.45
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.44
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.44
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.43
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.42
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.42
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.41
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.41
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.41
PLN02917	293	CMP-KDO synthetase	99.4
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.4
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.39
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.38
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.38
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.38
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.37
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.37
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.36
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.35
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.35
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.35
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.33
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.33
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.32
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.32
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.31
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.31
PLN02296	269	carbonate dehydratase	99.3
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.3
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.3
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.3
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.29
PLN02472	246	uncharacterized protein	99.29
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.29
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.29
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.27
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.27
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.26
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.26
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.25
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.25
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.25
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.24
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.24
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.24
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.24
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.23
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.23
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.23
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.22
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.22
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.2
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.19
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.19
PRK10502	182	putative acyl transferase; Provisional	99.18
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.18
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.17
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.17
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.17
PRK13627	196	carnitine operon protein CaiE; Provisional	99.17
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.16
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.16
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.15
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.14
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.14
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.13
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.13
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.12
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.12
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.12
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.12
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.1
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.09
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.09
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.08
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.07
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.05
PLN02694	294	serine O-acetyltransferase	99.04
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.04
COG2068	199	Uncharacterized MobA-related protein [General func	99.03
PRK10092	183	maltose O-acetyltransferase; Provisional	99.01
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.01
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.01
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	98.98
COG1043	260	LpxA Acyl-[acyl carrier protein]	98.96
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	98.96
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.95
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.95
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.93
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.92
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.92
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	98.92
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.91
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	98.91
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.9
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.9
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	98.9
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.88
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	98.88
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.86
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.86
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.86
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	98.85
PLN02739	355	serine acetyltransferase	98.84
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.84
PRK10502	182	putative acyl transferase; Provisional	98.84
PRK11132	273	cysE serine acetyltransferase; Provisional	98.83
PLN02357	360	serine acetyltransferase	98.83
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	98.82
PRK10191	146	putative acyl transferase; Provisional	98.82
PRK10092	183	maltose O-acetyltransferase; Provisional	98.81
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	98.81
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	98.8
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.8
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.78
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.77
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.76
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.75
PLN02694	294	serine O-acetyltransferase	98.75
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.75
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	98.74
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.74
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.74
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.73
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.73
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.72
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.69
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.68
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.68
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.67
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.67
PRK10191	146	putative acyl transferase; Provisional	98.64
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.64
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	98.63
PLN02357	360	serine acetyltransferase	98.62
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.61
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	98.59
PLN02739	355	serine acetyltransferase	98.58
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.57
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	98.57
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.57
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	98.56
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.48
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	98.41
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.35
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	98.33
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.29
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.27
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.21
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.21
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.19
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.18
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	97.98
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	97.83
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	97.78
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.58
COG4801	277	Predicted acyltransferase [General function predic	97.41
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	97.39
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.25
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.23
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	97.12
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.06
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.01
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.0
COG4801	277	Predicted acyltransferase [General function predic	96.99
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	96.98
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	96.84
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	96.75
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	96.68
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	96.65
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	96.34
PLN02830	615	UDP-sugar pyrophosphorylase	96.13
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	95.94
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	95.52
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	95.52
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	94.7
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	90.92

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-113  Score=910.45  Aligned_cols=551  Identities=52%  Similarity=0.848  Sum_probs=475.6

Q ss_pred             CcccchHHHHHHHHhcccCCCCcccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEE
Q 007143            1 MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVF   80 (616)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv   80 (616)
                      |++++++  ++|+..-++...+.  ++.+|||+||++|.+||+|+|..+|++||||+|.|||+|+|++|.++||++|||+
T Consensus         1 M~~~k~~--~~~~~~~~~~~~~~--~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvf   76 (673)
T KOG1461|consen    1 MAKKKKR--PAALGETGKEENFR--EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVF   76 (673)
T ss_pred             CCcccCc--ccccccCccccccc--ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEE
Confidence            7777766  33333333333333  8999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccC
Q 007143           81 CCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKD  160 (616)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d  160 (616)
                      |+.|+.||.+|+++++|.....+.+..|...+++++|||||+++++.++.+||+|++||+++|++|.++|++||+||+.|
T Consensus        77 c~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~D  156 (673)
T KOG1461|consen   77 CSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKED  156 (673)
T ss_pred             ecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhC
Confidence            99999999999999999887667788888888999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143          161 NNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC  240 (616)
Q Consensus       161 ~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc  240 (616)
                      |+++|||++++.+       +|.+++++++++|+.|+||+||++.. ...+.+.+++++|..++++.+|+||.||+|+||
T Consensus       157 k~~iMTmv~k~~s-------t~~~~~~~~~avd~~T~~ll~yq~~~-~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIc  228 (673)
T KOG1461|consen  157 KDAIMTMVFKESS-------TRETTEQVVIAVDSRTSRLLHYQKCV-REKHDIQLDLSLFDSNDEVEVRNDLLDCQIDIC  228 (673)
T ss_pred             ccceEEEEEeccc-------cccCCcceEEEEcCCcceEEeehhhc-ccccccccCHHHhcCCCcEEEEccCCCceeeEe
Confidence            9999999999864       46667888999999999999999732 235679999999999999999999999999999


Q ss_pred             CHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCCCcccCCC
Q 007143          241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR  319 (616)
Q Consensus       241 sp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~  319 (616)
                      ||+|++||+|||||| +|.||++|+|..+++|++||+|.+++. |++||.+|++|+.+++|+|+||+||++|+.++.+++
T Consensus       229 S~~V~sLF~dNFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q  307 (673)
T KOG1461|consen  229 SPEVLSLFTDNFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQ  307 (673)
T ss_pred             cHhHHHHhhhcccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCc
Confidence            999999999999999 799999999999999999999999865 999999999999999999999999999999999999


Q ss_pred             cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEE
Q 007143          320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIV  399 (616)
Q Consensus       320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI  399 (616)
                      .+.+.|.++|.++.+.++++|.++.+++||.+|.||.+++|.||+||.||.||.||+|.+|+||.+|+||+||+|.+|+|
T Consensus       308 ~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii  387 (673)
T KOG1461|consen  308 TFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAII  387 (673)
T ss_pred             eeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCCCCCChhhhhhhcCCCCcccccccccCCCCCccccccc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSE  479 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (616)
                      |++|.|+++|++.+||+||.+|+||++.+++.+++|.+   +..+++|||.        ..+                  
T Consensus       388 ~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~~~---p~~eesdee~--------~~~------------------  438 (673)
T KOG1461|consen  388 CDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ---PTTEESDEEG--------LDD------------------  438 (673)
T ss_pred             ecCcEeCCCcccCCCcEEeeeeEeCCCccccccccccC---Ccccccchhh--------ccc------------------
Confidence            99999999999999999999999999999999999933   4455554430        000                  


Q ss_pred             CCCCCcCCCCCeeEeeccCCCchhhhccCCCCCCCCcccccccccchhhhhhhcccccccCCCccccCCCCCCCCCCC-C
Q 007143          480 AHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNE-D  558 (616)
Q Consensus       480 ~~~~~vg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~-~  558 (616)
                      ....-+|+.|.||+|..+ +.++|+|.....+..+.++...+...++       .++          .|.++++++.+ +
T Consensus       439 ~~l~siG~~G~gyi~~~~-~~~dee~~~~~~~~~~~k~n~~~~~Dd~-------~se----------~s~~~~edd~~~~  500 (673)
T KOG1461|consen  439 VKLKSIGPDGAGYIWETE-DADDEEWKPLVPPSPNDKTNEAIEDDDS-------ESE----------SSVSEEEDDASTD  500 (673)
T ss_pred             hheeeccCCcceeeeccc-CcccccccccccCCcccccccccccccc-------hhh----------ccccccccccccc
Confidence            001228999999999763 3345555555444444333321111111       100          11112222212 2


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCcEEEeecccccccCCChHHhhcccCc
Q 007143          559 SKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGF  611 (616)
Q Consensus       559 ~~~d~~~F~~e~~~~l~r~~~~~~~~d~~~lEin~lr~a~n~~~~~v~~~~~~  611 (616)
                      ..+|+..|++||.+||+||+|||+++|+++|||||||||||++++||+++.-+
T Consensus       501 in~d~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~  553 (673)
T KOG1461|consen  501 INDDTKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFM  553 (673)
T ss_pred             cCchhHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHH
Confidence            33578899999999999999999999999999999999999999999987643

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=4.8e-48  Score=422.60  Aligned_cols=355  Identities=20%  Similarity=0.287  Sum_probs=275.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-----
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ-----  100 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~-----  100 (616)
                      +.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+....|+..     
T Consensus         2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~   81 (436)
T PLN02241          2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFG   81 (436)
T ss_pred             CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccC
Confidence            459999999999999999999999999999996 99999999999999999999999999999999986432210     


Q ss_pred             -CCcEEEEEeCC-----CccCHHHHHHHHHhc--cc---ccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEE
Q 007143          101 -PNFTVKTIESH-----NIISAGDALRLIYEQ--NV---IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMII  169 (616)
Q Consensus       101 -~~~~i~~i~~~-----~~~~~gdalr~~~~~--~~---i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~  169 (616)
                       .++.+.+..+.     ..+|+|+|++.+...  ..   +.++|||++||++++.+|.+++++|+++     ++.||+++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~-----~a~~ti~~  156 (436)
T PLN02241         82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRES-----GADITIAC  156 (436)
T ss_pred             CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHc-----CCCEEEEE
Confidence             12333322221     357999999865311  11   2467999999999999999999999885     48899999


Q ss_pred             ecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehHhhhcCC-ceEEEeccccceeEeeCHhHHh-
Q 007143          170 KKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS-  246 (616)
Q Consensus       170 ~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~-~~~~~l~~~l~~~~~-~~~ir~dl~d~gIyIcsp~vl~-  246 (616)
                      ++....   +..+++    ++.+|. +++|++|.|||..+ ...+.++.++|..++ +++.+.+++++|||+|+|++|. 
T Consensus       157 ~~v~~~---~~~~yg----vv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~  228 (436)
T PLN02241        157 LPVDES---RASDFG----LMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLK  228 (436)
T ss_pred             Eecchh---hcCcce----EEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHH
Confidence            887533   345677    788864 78999999998633 345778888887554 3555678999999999999994 


Q ss_pred             hhhcCCChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeee
Q 007143          247 LFTDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLER  325 (616)
Q Consensus       247 lf~dnfd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~  325 (616)
                      +|.+.+++   +.+|..+++...+ .|.++++|.++ +||.+|+++++|.+++++++...  |   ...+....      
T Consensus       229 ll~~~~~~---~~~~~~dil~~l~~~g~~v~~~~~~-gyw~dIg~~~~y~~a~~~~l~~~--~---~~~~~~~~------  293 (436)
T PLN02241        229 LLRWRFPT---ANDFGSEIIPGAIKEGYNVQAYLFD-GYWEDIGTIKSFYEANLALTKQP--P---KFSFYDPD------  293 (436)
T ss_pred             HHHhhccc---ccchhHHHHHHHhhcCCeEEEEeeC-CEEEECCCHHHHHHHHHHHhcCC--c---hhhccCCC------
Confidence            67766553   2366667776654 45799999997 79999999999999999999842  1   11111110      


Q ss_pred             cceEEc----CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCC----------------
Q 007143          326 RGMYRA----LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN----------------  385 (616)
Q Consensus       326 ~~i~~~----~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~----------------  385 (616)
                      ..+|.+    +.+.+ .++.|.+ ++|+++|.|+ ++.|++|+||++|.||++|+|.+++++..                
T Consensus       294 ~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~  370 (436)
T PLN02241        294 APIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEG  370 (436)
T ss_pred             CcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccC
Confidence            111111    22333 3566644 8999999999 99999999999999999999999998773                


Q ss_pred             ---CEECCCcEEeceEECCCcEECCCCEEC
Q 007143          386 ---VIIEDGCELRHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       386 ---v~Ig~~~~I~~siIg~~v~Ig~~~~I~  412 (616)
                         ++||++|+|.+++|+++|+||+++.|.
T Consensus       371 ~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~  400 (436)
T PLN02241        371 KVPIGIGENTKIRNAIIDKNARIGKNVVII  400 (436)
T ss_pred             CcceEECCCCEEcceEecCCCEECCCcEEe
Confidence               389999999999999999999999997

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-47  Score=405.48  Aligned_cols=319  Identities=24%  Similarity=0.394  Sum_probs=232.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .|+|||||+|+||||+|||..+||||+||+|+|||+|+|++|+++|+++|+|.++++.++|++|+.+..+   .+++|.+
T Consensus         1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~---~~~~I~y   77 (358)
T COG1208           1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG---LGVRITY   77 (358)
T ss_pred             CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc---cCCceEE
Confidence            4899999999999999999999999999999999999999999999999999999999999999998522   2578999


Q ss_pred             EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD  186 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~  186 (616)
                      +.+.+++|||++|+.+  ++++. ++|++++||++++.+|..++++|+++     .+.+|++.....     ...++|  
T Consensus        78 ~~e~~~lGTag~l~~a--~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~-----~~~~~~~~~~~~-----~~~~~G--  143 (358)
T COG1208          78 VVEKEPLGTAGALKNA--LDLLGGDDFLVLNGDVLTDLDLSELLEFHKKK-----GALATIALTRVL-----DPSEFG--  143 (358)
T ss_pred             EecCCcCccHHHHHHH--HHhcCCCcEEEEECCeeeccCHHHHHHHHHhc-----cCccEEEEEecC-----CCCcCc--
Confidence            9999999999999965  45565 67999999999999999999999986     377787777654     235677  


Q ss_pred             ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc--CCChhhHHHHhhhh
Q 007143          187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRRHFVKG  264 (616)
Q Consensus       187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d--nfd~q~lr~dfv~~  264 (616)
                        ++..+..++++..|.+||.. ..                ..++++++|+|+|+|+++.++..  .+++.   .++++.
T Consensus       144 --vv~~~~~~~~v~~f~ekp~~-~~----------------~~~~~in~Giyi~~~~v~~~i~~~~~~~~~---~~~~~~  201 (358)
T COG1208         144 --VVETDDGDGRVVEFREKPGP-EE----------------PPSNLINAGIYIFDPEVFDYIEKGERFDFE---EELLPA  201 (358)
T ss_pred             --eEEecCCCceEEEEEecCCC-CC----------------CCCceEEeEEEEECHHHhhhcccCCcccch---hhHHHH
Confidence              77777445799999999842 10                13578999999999999996653  23332   245555


Q ss_pred             hhhccccCceEEEEEccccchhhccChhhHHHHhhhhhcccc-ccccCCCcc-cCCCcceeeecceEEcCCcEECCCCEE
Q 007143          265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT-YPYVPDVKF-CGNRATKLERRGMYRALEIEQSRSAQV  342 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~-~p~~p~~~~-~~~~~~~~~~~~i~~~~~v~i~~~~~I  342 (616)
                      ++.   .+..++++... +||.+|+++++|..+++.+++++. ++.-+.... ..... ....+++|+++++.|++++.|
T Consensus       202 l~~---~~~~v~~~~~~-g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i  276 (358)
T COG1208         202 LAA---KGEDVYGYVFE-GYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALI  276 (358)
T ss_pred             HHh---CCCcEEEEEeC-CeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEE
Confidence            543   23359999997 799999999999999999987432 221111000 00111 334445555555555555555


Q ss_pred             CCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECC
Q 007143          343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIED  390 (616)
Q Consensus       343 ~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~  390 (616)
                      +++++||++|.|+.++.|.+|+|.++|.||+++.|.+|+|+.+|+||+
T Consensus       277 ~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         277 GPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             CCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence            555555555555555555555555555555555555555555555554

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.4e-46  Score=408.25  Aligned_cols=379  Identities=20%  Similarity=0.280  Sum_probs=285.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC--CC-c
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ--PN-F  103 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~--~~-~  103 (616)
                      .++|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+....|...  .+ +
T Consensus         3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~   82 (429)
T PRK02862          3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFV   82 (429)
T ss_pred             cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEE
Confidence            58999999999999999999999999999999 99999999999999999999999999999999976322211  12 1


Q ss_pred             EEEEEeCC----C-ccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCC
Q 007143          104 TVKTIESH----N-IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKP  174 (616)
Q Consensus       104 ~i~~i~~~----~-~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~  174 (616)
                      .+....+.    . .+|+|+|++..  +.++.    ++|||++||++++.++.++++.|++.     ++.+||++++...
T Consensus        83 ~i~~~~~~~~~~~~~lGTa~al~~a--~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~~~~  155 (429)
T PRK02862         83 EVLAAQQTPENPSWFQGTADAVRKY--LWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRET-----GADITLAVLPVDE  155 (429)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHc-----CCCEEEEEEecCh
Confidence            22222111    1 27999999965  33443    45999999999999999999999775     4778888876543


Q ss_pred             CCCCcccccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehHhhhcCC-ceEEEeccccceeEeeCHhHHh-hhhcC
Q 007143          175 SPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS-LFTDN  251 (616)
Q Consensus       175 ~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~-~~~~~l~~~l~~~~~-~~~ir~dl~d~gIyIcsp~vl~-lf~dn  251 (616)
                      .   ...+||    ++.+|+ ++++..|.|||... ...+.++.++|..++ ....+..++++|||+|+|++|. ++...
T Consensus       156 ~---~~~~yG----~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~  227 (429)
T PRK02862        156 K---DASGFG----LMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN  227 (429)
T ss_pred             h---hcccce----EEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC
Confidence            2   345677    788874 68999999998632 345677888776554 3444567899999999999995 66654


Q ss_pred             CChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEc
Q 007143          252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRA  331 (616)
Q Consensus       252 fd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~  331 (616)
                      +.+.+...|+++.    .+.+.++++|.++ +||.+++++++|.+++++++..    ..|...+.......+.+  ....
T Consensus       228 ~~~~~~~~dil~~----l~~~~~v~~~~~~-g~w~digt~~~y~~an~~l~~~----~~~~~~~~~~~~~i~~~--~~~~  296 (429)
T PRK02862        228 PEYTDFGKEIIPE----AIRDYKVQSYLFD-GYWEDIGTIEAFYEANLALTQQ----PNPPFSFYDEKAPIYTR--ARYL  296 (429)
T ss_pred             CChhhhHHHHHHH----HhccCcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcC----CCCcccccCCCCceecc--CCCC
Confidence            4333334455544    3467789999986 8999999999999999998732    22322111111111111  1122


Q ss_pred             CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECC-------------------CCEECCCc
Q 007143          332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD-------------------NVIIEDGC  392 (616)
Q Consensus       332 ~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~-------------------~v~Ig~~~  392 (616)
                      +.+.+ .++.| .+++||++|.| +++.|++|+||++|+||++|+|.+|+|+.                   ++.||++|
T Consensus       297 ~~a~~-~~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~  373 (429)
T PRK02862        297 PPSKL-LDATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGT  373 (429)
T ss_pred             CCccc-cccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCC
Confidence            22333 25666 36899999999 89999999999999999999999999987                   69999999


Q ss_pred             EEeceEECCCcEECCCCEEC------------CCCEECCC-cEECCCCEECCCCEE
Q 007143          393 ELRHVIVCDGVIMKAGAVLK------------PGVVLSFK-VVIGERFVVPAHSKV  435 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~------------~g~vIg~~-v~Ig~~~~v~~~~~v  435 (616)
                      .|.+++|+.+|.||++++|.            +|++|++| |+|+.+++|++|++|
T Consensus       374 ~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (429)
T PRK02862        374 TIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI  429 (429)
T ss_pred             EEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence            99999999999999999995            25677777 777777777777653

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.4e-47  Score=381.75  Aligned_cols=373  Identities=25%  Similarity=0.390  Sum_probs=283.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ..|||||+|+|.|+||--++...|||||||+|+|||+|.|.+|.++|+++|+|++.. ....|+..+.+..-......-+
T Consensus         8 ~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v   87 (433)
T KOG1462|consen    8 SEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYV   87 (433)
T ss_pred             HHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEE
Confidence            358999999999999999999999999999999999999999999999999999986 3567777776532211111122


Q ss_pred             EEEe-CCCccCHHHHHHHHHhcccccC-CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC-Ccccc
Q 007143          106 KTIE-SHNIISAGDALRLIYEQNVIHG-DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI-THQSR  182 (616)
Q Consensus       106 ~~i~-~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~-~~~~r  182 (616)
                      .+.. .....|++|+||.+..  .|++ |||+++||.|+++++..+++++|..   |+..+|++. -..+..+. +.+.+
T Consensus        88 ~ip~~~~~d~gtadsLr~Iy~--kikS~DflvlsCD~Vtdv~l~~lvd~FR~~---d~slamli~-~~~s~~~~pgqk~k  161 (433)
T KOG1462|consen   88 EIPTDDNSDFGTADSLRYIYS--KIKSEDFLVLSCDFVTDVPLQPLVDKFRAT---DASLAMLIG-NALSEVPIPGQKGK  161 (433)
T ss_pred             EeecccccccCCHHHHhhhhh--hhccCCEEEEecccccCCCcHHHHHHHhcc---ChhHhHHhc-cccccccccCcccc
Confidence            2221 2236799999998764  4776 9999999999999999999999953   455566554 11111111 12223


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV  262 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv  262 (616)
                      -.....++.++++|.|+++.... ...+..+.|...|++.||.+++.++|.|+|||.|+.+++++|.++-.-.+.|.+|+
T Consensus       162 ~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~  240 (433)
T KOG1462|consen  162 KKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFL  240 (433)
T ss_pred             cccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccccc
Confidence            22355689999999997655543 23456789999999999999999999999999999999999997655556677888


Q ss_pred             hhhhhccc----------------------c-------CceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCC
Q 007143          263 KGLLLDDI----------------------M-------GYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPD  312 (616)
Q Consensus       263 ~~~l~~~i----------------------~-------g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~  312 (616)
                      +.++....                      .       .-++|+|.++.+ ...|++|+-.|.++|++-+   ..-+.|+
T Consensus       241 P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~---~~~l~~e  317 (433)
T KOG1462|consen  241 PYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKK---LKKLCSE  317 (433)
T ss_pred             chhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHH---HHHhccc
Confidence            77764321                      1       257888888654 5679999999999997422   1123444


Q ss_pred             CcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143          313 VKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC  392 (616)
Q Consensus       313 ~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~  392 (616)
                      ..+..+.                ....+.++..+.||++|+|++++.|..|+||.+|.||+.|+|.+|.|++||+||+||
T Consensus       318 ~~~~k~~----------------~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~  381 (433)
T KOG1462|consen  318 AKFVKNY----------------VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGV  381 (433)
T ss_pred             cccccch----------------hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCc
Confidence            3322210                011145667888899999999999999999999999999999999999999999999


Q ss_pred             EEeceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143          393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER  426 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~  426 (616)
                      .|++||||.++.||+++.+. +|.||.+=+|.+.
T Consensus       382 ~IensIIg~gA~Ig~gs~L~-nC~Ig~~yvVeak  414 (433)
T KOG1462|consen  382 NIENSIIGMGAQIGSGSKLK-NCIIGPGYVVEAK  414 (433)
T ss_pred             ceecceecccceecCCCeee-eeEecCCcEEccc
Confidence            99999999999999999998 4555555554433

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.3e-44  Score=389.64  Aligned_cols=358  Identities=18%  Similarity=0.230  Sum_probs=265.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHh-cCCCCC---C
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLEN-SEWFSQ---P  101 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~-~~~~~~---~  101 (616)
                      +.|+|||||||+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+++ .+|...   .
T Consensus         2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~   81 (380)
T PRK05293          2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRING   81 (380)
T ss_pred             CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence            359999999999999999999999999999999 89999999999999999999999999999999975 345322   1


Q ss_pred             CcEEE--EEeCCC---ccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143          102 NFTVK--TIESHN---IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS  172 (616)
Q Consensus       102 ~~~i~--~i~~~~---~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~  172 (616)
                      ++.+.  ++.+.+   ..|+++|++..  +.++.    ++|||++||++++.++.+++++|+++     ++.+|+++...
T Consensus        82 ~~~i~~~~~~~~~~~~~~Gta~al~~a--~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~-----~~~~tl~~~~~  154 (380)
T PRK05293         82 GVTILPPYSESEGGKWYKGTAHAIYQN--IDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK-----EADVTIAVIEV  154 (380)
T ss_pred             CEEEeCCcccCCCCcccCCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCCEEEEEEEc
Confidence            23333  333332   37999999854  34443    34999999999999999999999875     35577776554


Q ss_pred             CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcC
Q 007143          173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN  251 (616)
Q Consensus       173 ~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dn  251 (616)
                      ...   +..+||    ++.+|. .++|..+.+||..+                   ..++.++|+|+++++++. ++.+.
T Consensus       155 ~~~---~~~~yG----~v~~d~-~g~V~~~~eKp~~~-------------------~~~~~~~Giyi~~~~~l~~~l~~~  207 (380)
T PRK05293        155 PWE---EASRFG----IMNTDE-NMRIVEFEEKPKNP-------------------KSNLASMGIYIFNWKRLKEYLIED  207 (380)
T ss_pred             chh---hccccC----EEEECC-CCcEEEEEeCCCCC-------------------CcceeeeEEEEEcHHHHHHHHHHH
Confidence            322   455777    777874 58999999997522                   135678999999999885 44321


Q ss_pred             CChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEE
Q 007143          252 FDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYR  330 (616)
Q Consensus       252 fd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~  330 (616)
                      ........+|..++++..+ .+.++++|..+ +||.+++++++|.+++++++.+-..    ...+... ...  .....+
T Consensus       208 ~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~----~~~~~~~-~~~--~~~~~~  279 (380)
T PRK05293        208 EKNPNSSHDFGKNVIPLYLEEGEKLYAYPFK-GYWKDVGTIESLWEANMELLRPENP----LNLFDRN-WRI--YSVNPN  279 (380)
T ss_pred             hhcCCchhhhHHHHHHHHhhcCCeEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCch----hhhcCCC-Cce--ecCCcC
Confidence            1000012345555555444 45789999987 7999999999999999998865311    0011110 000  011123


Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007143          331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV  410 (616)
Q Consensus       331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~  410 (616)
                      ...+.|++++.| .++.||++|.|+  ..+.+|+||++|.||++|+|.+|+|+++++|+++|+|.+|+|++++.|+.+++
T Consensus       280 ~~~~~i~~~~~i-~~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~  356 (380)
T PRK05293        280 LPPQYIAENAKV-KNSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVI  356 (380)
T ss_pred             CCCCEECCCCEE-ecCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence            344556666666 467788888885  35779999999999999999999999999999999999999999999999999


Q ss_pred             ECCC----CEECCCcEECCCCEE
Q 007143          411 LKPG----VVLSFKVVIGERFVV  429 (616)
Q Consensus       411 I~~g----~vIg~~v~Ig~~~~v  429 (616)
                      |.++    .+||++++|+++++|
T Consensus       357 i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        357 IGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             EcCCCceeEEEeCCCCCCCCcEe
Confidence            9875    556666666665554

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.9e-45  Score=362.99  Aligned_cols=345  Identities=20%  Similarity=0.272  Sum_probs=270.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.|+||||.+|+|||++|||...||||+|++|+|||+|.+++|..+|+++|++.+++..+++..|+.+.. ...-+++|.
T Consensus         8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-~~~lgVei~   86 (371)
T KOG1322|consen    8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-GKELGVEIL   86 (371)
T ss_pred             cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh-hhccceEEE
Confidence            5699999999999999999999999999999999999999999999999999999998887776665532 112245666


Q ss_pred             EEeCCCccC---HHHHHHHHHhcccccC--CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          107 TIESHNIIS---AGDALRLIYEQNVIHG--DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       107 ~i~~~~~~~---~gdalr~~~~~~~i~~--dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      +-.+.++++   +.++.|...   ...+  +|++++||+++.+++.+|+++|++++     +..|+++.+..     .++
T Consensus        87 ~s~eteplgtaGpl~laR~~L---~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~g-----ae~TI~~t~vd-----epS  153 (371)
T KOG1322|consen   87 ASTETEPLGTAGPLALARDFL---WVFEDAPFFVLNSDVICRMPYKEMVQFHRAHG-----AEITIVVTKVD-----EPS  153 (371)
T ss_pred             EEeccCCCcccchHHHHHHHh---hhcCCCcEEEecCCeeecCCHHHHHHHHHhcC-----CceEEEEEecc-----Ccc
Confidence            655655654   445555332   2223  69999999999999999999999974     89999998876     467


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHh
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF  261 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~df  261 (616)
                      +||    ++.+|..+++|.+|.|||..                   +-++.+|.|||+++|+||..+. -+.     .-|
T Consensus       154 kyG----vv~~d~~~grV~~F~EKPkd-------------------~vsnkinaGiYi~~~~vL~ri~-~~p-----tSi  204 (371)
T KOG1322|consen  154 KYG----VVVIDEDTGRVIRFVEKPKD-------------------LVSNKINAGIYILNPEVLDRIL-LRP-----TSI  204 (371)
T ss_pred             ccc----eEEEecCCCceeEehhCchh-------------------hhhccccceEEEECHHHHhHhh-hcc-----cch
Confidence            999    99999889999999999862                   1245667999999999998665 111     124


Q ss_pred             hhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCE
Q 007143          262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQ  341 (616)
Q Consensus       262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~  341 (616)
                      -+.+++....++++++|.++ +||.||+++++|+.+..-+++..     |..                  ....+.+++.
T Consensus       205 ekEifP~~a~~~~l~a~~l~-gfWmDIGqpkdf~~g~~~Yl~s~-----~~~------------------t~~r~~p~~~  260 (371)
T KOG1322|consen  205 EKEIFPAMAEEHQLYAFDLP-GFWMDIGQPKDFLTGFSFYLRSL-----PKY------------------TSPRLLPGSK  260 (371)
T ss_pred             hhhhhhhhhhcCceEEEecC-chhhhcCCHHHHHHHHHHHHhhC-----ccc------------------CCccccCCcc
Confidence            45555656688999999998 99999999999999966666532     110                  0011222344


Q ss_pred             ECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCC
Q 007143          342 VGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       342 I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      |.+++.+.+-..+|.+|.|+ +++||.+|+|+.+++|.+|.++.++.++.++.|..+++|.++.||.+++|...|+||++
T Consensus       261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~n  340 (371)
T KOG1322|consen  261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKN  340 (371)
T ss_pred             ccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccc
Confidence            44555555555566666665 37899999999999999999999999999999999999999999999999999999999


Q ss_pred             cEECCCCEECCCCEEccc
Q 007143          421 VVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       421 v~Ig~~~~v~~~~~v~~~  438 (616)
                      |+|.+.-.+..+....+.
T Consensus       341 V~V~d~~~vn~g~~l~~k  358 (371)
T KOG1322|consen  341 VIVADEDYVNEGSGLPIK  358 (371)
T ss_pred             eEEecccccccceeEEec
Confidence            999887777776555443

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=6.3e-43  Score=379.34  Aligned_cols=345  Identities=17%  Similarity=0.241  Sum_probs=253.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ..|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+.. .|... ++.+
T Consensus         4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~-~~~~   81 (407)
T PRK00844          4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQ-TWRLS-GLLG   81 (407)
T ss_pred             CceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHh-CcCcc-ccCC
Confidence            468999999999999999999999999999998 99999999999999999999999999999999974 46322 1222


Q ss_pred             EEEe---CC------CccCHHHHHHHHHhcccccC---C-EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143          106 KTIE---SH------NIISAGDALRLIYEQNVIHG---D-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS  172 (616)
Q Consensus       106 ~~i~---~~------~~~~~gdalr~~~~~~~i~~---d-fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~  172 (616)
                      .++.   ..      ..+|+|+|++..  +.++.+   + |||++||++++.+|.+++++|++.     ++.+|+++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~lGta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~-----~~~~ti~~~~~  154 (407)
T PRK00844         82 NYITPVPAQQRLGKRWYLGSADAIYQS--LNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIES-----GAGVTVAAIRV  154 (407)
T ss_pred             CeEEECCcccCCCCCcccCCHHHHHHH--HHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCcEEEEEEec
Confidence            2221   11      148999999854  444532   3 899999999999999999999875     46788887754


Q ss_pred             CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC
Q 007143          173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN  251 (616)
Q Consensus       173 ~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn  251 (616)
                      ...   ...++|    ++.+|+ .++|..|.+||......       +.     .-.+.++.+|||++++++| .++...
T Consensus       155 ~~~---~~~~~G----vv~~d~-~g~v~~~~eKp~~~~~~-------~~-----~~~~~~~~~Giyi~~~~~l~~~l~~~  214 (407)
T PRK00844        155 PRE---EASAFG----VIEVDP-DGRIRGFLEKPADPPGL-------PD-----DPDEALASMGNYVFTTDALVDALRRD  214 (407)
T ss_pred             chH---HcccCC----EEEECC-CCCEEEEEECCCCcccc-------cC-----CCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence            322   445777    888885 68999999998632110       00     0124678999999999996 656531


Q ss_pred             C----ChhhHHHHhhhhhhhccccCceEEEEEcc-----------ccchhhccChhhHHHHhhhhhccccccccCCCccc
Q 007143          252 F----DYQHLRRHFVKGLLLDDIMGYKIFTHEIH-----------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFC  316 (616)
Q Consensus       252 f----d~q~lr~dfv~~~l~~~i~g~~I~~~~~~-----------~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~  316 (616)
                      .    ...++..|+++.++    ...++++|...           .+||.+|+++++|.++++++|.+... .   ..+.
T Consensus       215 ~~~~~~~~~~~~dii~~l~----~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~-~---~~~~  286 (407)
T PRK00844        215 AADEDSSHDMGGDIIPRLV----ERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-F---NLYN  286 (407)
T ss_pred             hcCCcccccchhhHHHHHh----ccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCc-c---ccCC
Confidence            1    11112234554444    34578888652           48999999999999999999975211 0   0010


Q ss_pred             CCC-cce---eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143          317 GNR-ATK---LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC  392 (616)
Q Consensus       317 ~~~-~~~---~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~  392 (616)
                      ... .+.   ...+..|++..+.    ..+.++++||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|+|+++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~  361 (407)
T PRK00844        287 REWPIYTSSPNLPPAKFVDGGGR----VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGA  361 (407)
T ss_pred             CCCcccccCCCCCCceEecCCCc----cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCC
Confidence            000 000   1112233322211    1234678999999998 899999999999999999999999999999999999


Q ss_pred             EEeceEECCCcEECCCCEECC
Q 007143          393 ELRHVIVCDGVIMKAGAVLKP  413 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~  413 (616)
                      +|.+|+|++++.|+++++|+.
T Consensus       362 ~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        362 VVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             EEEeeEECCCCEECCCCEECC
Confidence            999999999999999888875

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=2e-43  Score=378.99  Aligned_cols=338  Identities=20%  Similarity=0.346  Sum_probs=221.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHH-HHHHHHHhc-CCCCCC---
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSK-QVIDYLENS-EWFSQP---  101 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~-~i~~~l~~~-~~~~~~---  101 (616)
                      .|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+ +|++|+.+. .|....   
T Consensus         2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~   81 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD   81 (369)
T ss_pred             cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence            58999999999999999999999999999999 999999999999999999999999876 999999763 453220   


Q ss_pred             CcEEEEEeCCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          102 NFTVKTIESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       102 ~~~i~~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                      +..+.+......+|+|++.....++.++.    ++|||++||++++++|.+++++|+++     ++.+|+++.+....  
T Consensus        82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~v~~~--  154 (369)
T TIGR02092        82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEET-----GKDITVVYKKVKPA--  154 (369)
T ss_pred             cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHc-----CCCEEEEEEecCHH--
Confidence            11122233334455555433333445552    45999999999999999999999875     47899998775421  


Q ss_pred             CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhh
Q 007143          178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQH  256 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~  256 (616)
                       ...+++   .++.++. ++++..+.+++.+..                   ..++.+|||+++|+++ .++.+.+... 
T Consensus       155 -~~~~~g---~vv~~~~-~g~v~~~~~~~~~~~-------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~-  209 (369)
T TIGR02092       155 -DASEYD---TILRFDE-SGKVKSIGQNLNPEE-------------------EENISLDIYIVSTDLLIELLYECIQRG-  209 (369)
T ss_pred             -HccccC---cEEEEcC-CCCEEeccccCCCCC-------------------cceeeeeEEEEEHHHHHHHHHHHhhcC-
Confidence             233554   1455653 467776644322110                   1235689999999976 4554322111 


Q ss_pred             HHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceE----EcC
Q 007143          257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMY----RAL  332 (616)
Q Consensus       257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~----~~~  332 (616)
                       ..+++.++++..+.+.++++|..+ +||.+|+++++|.+++++++++|.++...    ...      ...++    ..+
T Consensus       210 -~~~~~~d~i~~~~~~~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~----~~~------~~~~~~~~~~~~  277 (369)
T TIGR02092       210 -KLTSLEELIRENLKELNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF----YSS------QGPIYTKVKDEP  277 (369)
T ss_pred             -ccccHHHHHHHHhccCcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc----CCC------CCceeeccCCCC
Confidence             112333444443445689999887 89999999999999999999998764211    000      01111    112


Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~  412 (616)
                      .+.|++++.| ++++||++|.|+  +.|.+|+||++|.||++|.|.+|+|++++.|+.+|++.+|+||.+++|+++++|.
T Consensus       278 p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~  354 (369)
T TIGR02092       278 PTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA  354 (369)
T ss_pred             CcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence            2334444444 445555555554  2355555666666666666655556555555555555555555555555555553

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-44  Score=348.15  Aligned_cols=332  Identities=19%  Similarity=0.328  Sum_probs=272.2

Q ss_pred             CCeEEEEEeCC--CCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143           27 QPLQAILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        27 ~~l~aVILA~g--~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~  103 (616)
                      +.++||||.+|  +||||+||+.+.||||+||+|+|||+|-|+.+++. |+.+|+++.-+..+.+++|+......  -++
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e--~~~   78 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQE--FKV   78 (407)
T ss_pred             CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhh--ccc
Confidence            35799999998  68999999999999999999999999999999996 99999999888888888888763211  135


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhcccccC---CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIHG---DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ  180 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~~---dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~  180 (616)
                      .|.++.+..+.|+|+.|.....+ ++.+   .|+|+++|+-++++|.+|++.|+..     +..+||+..++++.   ..
T Consensus        79 pvrYL~E~~plGtaGgLyhFrdq-Il~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~-----g~~~tll~tkvs~e---~a  149 (407)
T KOG1460|consen   79 PVRYLREDNPLGTAGGLYHFRDQ-ILAGSPSAVFVLNADVCCSFPLQDMLEAHRRY-----GGIGTLLVTKVSRE---QA  149 (407)
T ss_pred             chhhhccCCCCCcccceeehhhH-HhcCCCceEEEEecceecCCcHHHHHHHHhhc-----CCceEEEEEEecHh---Hh
Confidence            68899999999999998865433 2332   3999999999999999999999765     58999999998765   56


Q ss_pred             cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCC-------
Q 007143          181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-------  253 (616)
Q Consensus       181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd-------  253 (616)
                      ..||    .++-|+.|++|+||.+||..                   +-+|.++||||+++|++|..+.+-+.       
T Consensus       150 snfG----~lV~dP~t~evlHYveKPsT-------------------fvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~  206 (407)
T KOG1460|consen  150 SNFG----CLVEDPSTGEVLHYVEKPST-------------------FVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE  206 (407)
T ss_pred             hccC----eeeecCCcCceEEeecCcch-------------------hhhcccceeEEEecHHHHHHHHHHHHHHHhhhh
Confidence            6788    78889999999999999862                   24789999999999999987765321       


Q ss_pred             -------hhhHHHHhh---hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccc--cccccCCCcccCCCcc
Q 007143          254 -------YQHLRRHFV---KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW--TYPYVPDVKFCGNRAT  321 (616)
Q Consensus       254 -------~q~lr~dfv---~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~--~~p~~p~~~~~~~~~~  321 (616)
                             ++....||+   .++|......+++|+|..+ ++|..+.+..+-..+++-+|+++  ++|-   .+..+...-
T Consensus       207 ~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~-~fW~QiKtagsal~as~lYLs~yk~t~p~---~Lak~pgt~  282 (407)
T KOG1460|consen  207 VEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETT-DFWSQIKTAGSALYASRLYLSQYKRTHPA---RLAKGPGTQ  282 (407)
T ss_pred             hhhcccccCCCccceEEeechhhhhhcCCCceEEEecc-cHHHHhccccceeehhhhHHHHHhhcCch---hhcCCCCCC
Confidence                   111122333   3444445566899999987 89999999999999999999854  4432   211121122


Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~  396 (616)
                      ....+++|++++++++++++||+|+.||.+++||+|+.|+.|+|-++|.|.+|+++-+|+|+-++.||..++++.
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~  357 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG  357 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999864

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.1e-42  Score=376.71  Aligned_cols=350  Identities=17%  Similarity=0.230  Sum_probs=256.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCee-hHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC---CC
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVP-MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PN  102 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~P-lI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~---~~  102 (616)
                      +.++|||||+|+||||+|||..+||||+||+|+| ||+|+|++|.++|+++|+|+++++.+++.+|+.+ .|...   .+
T Consensus        14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~   92 (425)
T PRK00725         14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQR-GWSFFREELG   92 (425)
T ss_pred             cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHh-hhcccccCCC
Confidence            4589999999999999999999999999999997 9999999999999999999999999999999975 35311   01


Q ss_pred             cEEEEEe-------CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEec
Q 007143          103 FTVKTIE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK  171 (616)
Q Consensus       103 ~~i~~i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~  171 (616)
                      ..+.++.       ++..+|+|+|++..  +.++.    ++|||++||++++.+|.+++++|+++     ++.+|+++.+
T Consensus        93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a--~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~-----~~~~tl~~~~  165 (425)
T PRK00725         93 EFVDLLPAQQRVDEENWYRGTADAVYQN--LDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVES-----GADCTVACLE  165 (425)
T ss_pred             CeEEEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHc-----CCCEEEEEEe
Confidence            1222221       12247999999864  34453    34999999999999999999999875     4677888766


Q ss_pred             CCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhc
Q 007143          172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTD  250 (616)
Q Consensus       172 ~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~d  250 (616)
                      ....   ...+||    ++.+|. .++|..|.|||..+..   +     ...    -.+.++++|||+|++++| .++.+
T Consensus       166 ~~~~---~~~~yG----~v~~d~-~~~V~~~~EKp~~~~~---~-----~~~----~~~~l~n~GIYi~~~~~L~~~L~~  225 (425)
T PRK00725        166 VPRE---EASAFG----VMAVDE-NDRITAFVEKPANPPA---M-----PGD----PDKSLASMGIYVFNADYLYELLEE  225 (425)
T ss_pred             cchh---hcccce----EEEECC-CCCEEEEEECCCCccc---c-----ccC----ccceEEEeeEEEEeHHHHHHHHHH
Confidence            5322   455777    888885 5899999999853211   0     000    114678999999999987 45542


Q ss_pred             -CCChhhHHHHhhhhhhhccccCceEEEEEccc----------cchhhccChhhHHHHhhhhhccccccccCCCcccCC-
Q 007143          251 -NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHS----------SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGN-  318 (616)
Q Consensus       251 -nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~----------~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~-  318 (616)
                       .++.+. ..+|..++++..+...++++|.++.          +||.+|+++++|.+++++++...     |...++.. 
T Consensus       226 ~~~~~~~-~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-----~~~~~~~~~  299 (425)
T PRK00725        226 DAEDPNS-SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-----PELDLYDRN  299 (425)
T ss_pred             hhcCCCc-cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-----chhhccCCC
Confidence             111111 1244455555545556899998853          69999999999999999998743     11111111 


Q ss_pred             -Ccce---eeecceEEc--CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143          319 -RATK---LERRGMYRA--LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC  392 (616)
Q Consensus       319 -~~~~---~~~~~i~~~--~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~  392 (616)
                       ..++   ...+..|+.  .++    .+.+ .+++||++|.| .+|.|++|+||++|.||++|+|.+|+||++|.||++|
T Consensus       300 ~~i~t~~~~~~~~~~~~~~~~~----~~~~-~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~  373 (425)
T PRK00725        300 WPIWTYQEQLPPAKFVFDRSGR----RGMA-INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSC  373 (425)
T ss_pred             CccccCCCCCCCCeEeccCCCC----cceE-EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCC
Confidence             0000   111122221  111    1222 47899999999 7899999999999999999999999999999999999


Q ss_pred             EEeceEECCCcEECCCCEECCCCE
Q 007143          393 ELRHVIVCDGVIMKAGAVLKPGVV  416 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~g~v  416 (616)
                      +|.+|+|+++|.|+++++|+.++.
T Consensus       374 ~i~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        374 RLRRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             EEeeEEECCCCEECCCCEECCCCC
Confidence            999999999999998888876654

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=2.9e-40  Score=352.40  Aligned_cols=344  Identities=17%  Similarity=0.242  Sum_probs=253.0

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHh-cCCCCCCCcEEEE
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVKT  107 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~-~~~~~~~~~~i~~  107 (616)
                      +|||||+|.|+||+|+|..+||+|+|++|+|||+|+|+.|.++|+++|+|++++ +.+++.+|+.+ ..|    ++++.+
T Consensus         1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~----~~~~~~   76 (353)
T TIGR01208         1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERF----GAKITY   76 (353)
T ss_pred             CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccccc----CceEEE
Confidence            589999999999999999999999999999999999999999999999999999 89999999976 334    456777


Q ss_pred             EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD  186 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~  186 (616)
                      +.+....|++++++..  +.++. ++||+++||++++.++.+++++|+++     ++.+|+++.+..     +..+++  
T Consensus        77 ~~~~~~~G~~~al~~a--~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g--  142 (353)
T TIGR01208        77 IVQGEPLGLAHAVYTA--RDFLGDDDFVVYLGDNLIQDGISRFVKSFEEK-----DYDALILLTKVR-----DPTAFG--  142 (353)
T ss_pred             EECCCCCCHHHHHHHH--HHhcCCCCEEEEECCeecCccHHHHHHHHHhc-----CCCcEEEEEECC-----ChhhCe--
Confidence            7777788999999964  44454 46999999999999999999999875     367777776643     234566  


Q ss_pred             ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhh
Q 007143          187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLL  266 (616)
Q Consensus       187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l  266 (616)
                        ++.++ +.++|..+.++|...                   .+++..+|||++++.+++++.+-..... ...++.+++
T Consensus       143 --~~~~~-~~~~v~~~~ekp~~~-------------------~~~~~~~Giy~~~~~l~~~l~~~~~~~~-~e~~l~d~l  199 (353)
T TIGR01208       143 --VAVLE-DGKRILKLVEKPKEP-------------------PSNLAVVGLYMFRPLIFEAIKNIKPSWR-GELEITDAI  199 (353)
T ss_pred             --EEEEc-CCCcEEEEEECCCCC-------------------CccceEEEEEEECHHHHHHHHhcCCCCC-CcEEHHHHH
Confidence              56665 457899999987522                   1356789999999999888754221000 011233344


Q ss_pred             hccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCEECCC
Q 007143          267 LDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSF  345 (616)
Q Consensus       267 ~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~  345 (616)
                      +..+ .|.+|++|.++ +||.+|+++++|.++++.++.+....+.+    .  .......+++++++++.| .++.|.++
T Consensus       200 ~~l~~~g~~v~~~~~~-g~w~digt~~dl~~a~~~ll~~~~~~~~~----i--~~~~~i~~~~~i~~~~~i-~~~~i~~~  271 (353)
T TIGR01208       200 QWLIEKGYKVGGSKVT-GWWKDTGKPEDLLDANRLILDEVEREVQG----V--DDESKIRGRVVVGEGAKI-VNSVIRGP  271 (353)
T ss_pred             HHHHHcCCeEEEEEeC-cEEEeCCCHHHHHHHHHHHHhhcccccCC----c--CCCCEEcCCEEECCCCEE-eCCEEECC
Confidence            3333 46789999997 89999999999999999999853211110    0  011233456777777777 56666666


Q ss_pred             cEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCC-cEEeceEECCCcEECCCCEECC--CCEECCCc
Q 007143          346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG-CELRHVIVCDGVIMKAGAVLKP--GVVLSFKV  421 (616)
Q Consensus       346 ~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~-~~I~~siIg~~v~Ig~~~~I~~--g~vIg~~v  421 (616)
                      +.||++|.|+ ++.| .+|+||++|.|+ +|.|.+|+|+++++|+.+ +++.+++|++++.|+.++.|..  +.++|+.+
T Consensus       272 ~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~  349 (353)
T TIGR01208       272 AVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYS  349 (353)
T ss_pred             cEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCc
Confidence            7777777776 3344 366677777776 566678888888888777 4777888888888777777763  34555555


Q ss_pred             EEC
Q 007143          422 VIG  424 (616)
Q Consensus       422 ~Ig  424 (616)
                      +|+
T Consensus       350 ~~~  352 (353)
T TIGR01208       350 QVE  352 (353)
T ss_pred             eec
Confidence            553

Alternate name: dTDP-D-glucose synthase

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.2e-41  Score=346.00  Aligned_cols=342  Identities=21%  Similarity=0.318  Sum_probs=268.7

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCC-CCcE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ-PNFT  104 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~-~~~~  104 (616)
                      .+-|+|||+|.|+|+.|||..++||-+|++| ..||+++|.++..+|+.+|+|++.+....+.+||... .|... .+=.
T Consensus         5 ~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~   84 (393)
T COG0448           5 NVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGG   84 (393)
T ss_pred             ceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCc
Confidence            4679999999999999999999999999999 7999999999999999999999999999999999885 45322 1112


Q ss_pred             EEEEeC-----C--CccCHHHHHHHHHhccccc---CC-EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCC
Q 007143          105 VKTIES-----H--NIISAGDALRLIYEQNVIH---GD-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK  173 (616)
Q Consensus       105 i~~i~~-----~--~~~~~gdalr~~~~~~~i~---~d-fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~  173 (616)
                      +.++..     .  -..|+++|++.-  ..++.   .+ +|+++||+|+++|++.++++|+++     +|.+|+++++.+
T Consensus        85 v~ilp~~~~~~~~~wy~Gtadai~Qn--l~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~-----gadiTv~~~~Vp  157 (393)
T COG0448          85 VFILPAQQREGGERWYEGTADAIYQN--LLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIES-----GADVTVAVKEVP  157 (393)
T ss_pred             EEEeCchhccCCCcceeccHHHHHHh--HHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEEECC
Confidence            333331     1  225889998852  23332   23 999999999999999999999996     599999999987


Q ss_pred             CCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCC
Q 007143          174 PSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNF  252 (616)
Q Consensus       174 ~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnf  252 (616)
                      ..   .++++|    ++.+|+ +++|..|.|||.....                 .+.|...||||++.++|. ++.+.-
T Consensus       158 ~~---eas~fG----im~~D~-~~~i~~F~eKp~~~~~-----------------~~~laSMgiYIf~~~~L~~~L~~~~  212 (393)
T COG0448         158 RE---EASRFG----VMNVDE-NGRIIEFVEKPADGPP-----------------SNSLASMGIYIFNTDLLKELLEEDA  212 (393)
T ss_pred             hH---hhhhcC----ceEECC-CCCEEeeeeccCcCCc-----------------ccceeeeeeEEEcHHHHHHHHHHHh
Confidence            66   778898    899995 8999999999974110                 123778999999999987 444322


Q ss_pred             ChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCC--cceeeecceEE
Q 007143          253 DYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR--ATKLERRGMYR  330 (616)
Q Consensus       253 d~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~--~~~~~~~~i~~  330 (616)
                      .-.....||.++++...+..+++++|.++ +||.+|+|.++|+++|+|+++-     .|+.++....  -|+..+    .
T Consensus       213 ~~~~~~~DfgkdiIp~~~~~~~v~AY~f~-gYw~dVgTi~syy~aNmdLl~~-----~~~~~lyd~~w~IyT~~~----~  282 (393)
T COG0448         213 KDPNSSHDFGKDIIPKLLERGKVYAYEFS-GYWRDVGTIDSYYEANMDLLSP-----QPELNLYDRNWPIYTKNK----N  282 (393)
T ss_pred             cccCccccchHHHHHHHHhcCCEEEEecc-chhhhcccHHHHHHhhHHhcCC-----CCcccccCCCCceeecCC----C
Confidence            11122368888888876655669999998 8999999999999999999981     2333222221  111111    1


Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007143          331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV  410 (616)
Q Consensus       331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~  410 (616)
                      .+-+.+..++.+ .++.|+.||.|.-  .|.+|+|+.+++|+++|+|.+|+|+++|.||.||+|+++||..+|.|++|++
T Consensus       283 ~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~  359 (393)
T COG0448         283 LPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV  359 (393)
T ss_pred             CCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence            122344444444 6888999999963  8999999999999999999999999999999999999999999999999999


Q ss_pred             ECCC
Q 007143          411 LKPG  414 (616)
Q Consensus       411 I~~g  414 (616)
                      |+..
T Consensus       360 i~~~  363 (393)
T COG0448         360 IGGD  363 (393)
T ss_pred             EcCC
Confidence            9865

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=5.8e-41  Score=358.84  Aligned_cols=344  Identities=20%  Similarity=0.242  Sum_probs=228.6

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCC--CcEEEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQP--NFTVKT  107 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~--~~~i~~  107 (616)
                      |||||+|+|+||+|+|..+||||+||+|+ |||+|+|+.|.++|+++|+|+++++.+++.+|+.. .|....  ...+++
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~   79 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQR-GWDFDGFIDGFVTL   79 (361)
T ss_pred             CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHh-ccCccCccCCCEEE
Confidence            69999999999999999999999999999 89999999999999999999999999999999985 453211  112333


Q ss_pred             Ee-------CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143          108 IE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP  176 (616)
Q Consensus       108 i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~  176 (616)
                      +.       ++...|++++++...  ..+.    ++|+|++||++++.+|.++++.|+++     ++.+|+++.+.... 
T Consensus        80 ~~~~~~~~~~~~~~Gt~~al~~a~--~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~-----~~~~ti~~~~~~~~-  151 (361)
T TIGR02091        80 LPAQQRESGTDWYQGTADAVYQNL--DLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIES-----GADVTIACIPVPRK-  151 (361)
T ss_pred             eCCcccCCCCccccCcHHHHHHHH--HHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHc-----CCCEEEEEEecChH-
Confidence            21       112479999998543  3332    44999999999999999999999764     35667776654211 


Q ss_pred             CCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC-CCh
Q 007143          177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN-FDY  254 (616)
Q Consensus       177 ~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn-fd~  254 (616)
                        ...+++    ++.+|. +++|..|.+||..+......        +    ...+.++|||+++|+++ .++... .+.
T Consensus       152 --~~~~~g----~v~~d~-~~~v~~~~ekp~~~~~~~~~--------~----~~~~~~~Giyi~~~~~l~~~l~~~~~~~  212 (361)
T TIGR02091       152 --EASRFG----VMQVDE-DGRIVDFEEKPANPPSIPGM--------P----DFALASMGIYIFDKDVLKELLEEDADDP  212 (361)
T ss_pred             --hccccc----EEEECC-CCCEEEEEECCCCccccccc--------c----cccEEeeeEEEEcHHHHHHHHHHHhhcC
Confidence              344666    778874 67899999987422111000        0    12478999999999997 454431 111


Q ss_pred             hhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCc
Q 007143          255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEI  334 (616)
Q Consensus       255 q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v  334 (616)
                      +. ..+|..++++..+..+++++|.++ +||.+|+++++|..++++++.++...    ..+... ... .....++.+.+
T Consensus       213 ~~-~~~~~~d~l~~l~~~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~----~~~~~~-~~~-~~~~~~~~~~~  284 (361)
T TIGR02091       213 ES-SHDFGKDIIPRALEEGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPF----DLYDRK-WPI-YTYNEFLPPAK  284 (361)
T ss_pred             Cc-ccccHHHHHHHHhhcCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchh----hccccC-Cce-ecCCCCCCCce
Confidence            11 123334445544555699999997 89999999999999999999875321    011000 000 01111233344


Q ss_pred             EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143          335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~  412 (616)
                      .+++++.| +++.||++|.|+++ .|.+|+||++|.||++|+|.+|+|++++.||.+|+|.+|+||+++.|+.++.|+
T Consensus       285 ~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       285 FVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             EecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence            44444433 45566666666654 556666666666666666666666666666666666655555555555554443

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=6.4e-38  Score=346.74  Aligned_cols=367  Identities=17%  Similarity=0.213  Sum_probs=263.4

Q ss_pred             ccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143           24 LARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        24 ~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~  103 (616)
                      ++.+.|+|||||+|+|+||+|   ..||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+++++|+..        .
T Consensus         3 ~~~~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~   71 (481)
T PRK14358          3 EQTRPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------S   71 (481)
T ss_pred             cccCCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------C
Confidence            445679999999999999997   58999999999999999999999999999999999988999998853        2


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCC
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT  178 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~  178 (616)
                      .+.++.++...|++++++...  ..+.   .+||+++||+  +.+.+|+.++++|++.     ++.+|+++.+..     
T Consensus        72 ~i~~v~~~~~~Gt~~al~~~~--~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-----~~~~ti~~~~~~-----  139 (481)
T PRK14358         72 GVAFARQEQQLGTGDAFLSGA--SALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-----GSAMTILTGELP-----  139 (481)
T ss_pred             CcEEecCCCcCCcHHHHHHHH--HHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----
Confidence            356666667789999988543  2332   4699999998  6778999999999775     467888877654     


Q ss_pred             cccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh---hhcCCChh
Q 007143          179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL---FTDNFDYQ  255 (616)
Q Consensus       179 ~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l---f~dnfd~q  255 (616)
                      ...+||    ++.+|. .++|..|.|||......               ...+++++|+|+++++++++   +.....  
T Consensus       140 ~~~~yG----~v~~d~-~g~v~~~~Ek~~~~~~~---------------~~~~~~n~Giyi~~~~~~~~~~~i~~~~~--  197 (481)
T PRK14358        140 DATGYG----RIVRGA-DGAVERIVEQKDATDAE---------------KAIGEFNSGVYVFDARAPELARRIGNDNK--  197 (481)
T ss_pred             CCCCce----EEEECC-CCCEEEEEECCCCChhH---------------hhCCeEEEEEEEEchHHHHHHHhcCCCcc--
Confidence            234677    788874 57999999987632110               01245679999999665444   432111  


Q ss_pred             hHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhh-hhccccc-cccCCCcccCCCcceeeecceEEcC
Q 007143          256 HLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKD-IIQRWTY-PYVPDVKFCGNRATKLERRGMYRAL  332 (616)
Q Consensus       256 ~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d-il~r~~~-p~~p~~~~~~~~~~~~~~~~i~~~~  332 (616)
                      . .+.++.+++...+ .|.++++|.+. +||.-++.-..|+.++.+ ++++-.+ .+.............+..+++++|+
T Consensus       198 ~-ge~~l~d~i~~~~~~g~~i~~~~~~-~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~  275 (481)
T PRK14358        198 A-GEYYLTDLLGLYRAGGAQVRAFKLS-DPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGR  275 (481)
T ss_pred             C-CeEEHHHHHHHHHHCCCeEEEEecC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECC
Confidence            0 0122333433332 45689999886 788888887777665543 4432111 0000000000112233457888999


Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEE
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL  411 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I  411 (616)
                      ++.|+++|.|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++|++++.|+.++.|. +++||+++.|+.++.|
T Consensus       276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i  355 (481)
T PRK14358        276 DVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET  355 (481)
T ss_pred             CCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999986 6888888888886554


Q ss_pred             -----CCCCEECC-----CcEECCCCEECCCCEEcc
Q 007143          412 -----KPGVVLSF-----KVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       412 -----~~g~vIg~-----~v~Ig~~~~v~~~~~v~~  437 (616)
                           ++++.+|.     +++||.++.|++++++..
T Consensus       356 ~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~  391 (481)
T PRK14358        356 KNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVAN  391 (481)
T ss_pred             CCceecCCcccCceEEECCeEEcCCceEcCCEEEeC
Confidence                 33333322     244445555555554443

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.8e-37  Score=342.21  Aligned_cols=332  Identities=17%  Similarity=0.227  Sum_probs=240.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .++|||||+|.|+||++   ..||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+|+.+.       ..+.+
T Consensus         3 ~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-------~~i~~   72 (459)
T PRK14355          3 NLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-------GDVSF   72 (459)
T ss_pred             cceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-------CceEE
Confidence            48999999999999985   789999999999999999999999999999999999989999998652       13556


Q ss_pred             EeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      +.+...+|++++++..  +..+.   +.||++.||+  +.+.+|..+++.|+..     ++.+|+...+..     ++.+
T Consensus        73 ~~~~~~~Gt~~al~~a--~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-----~~~~~v~~~~~~-----~~~~  140 (459)
T PRK14355         73 ALQEEQLGTGHAVACA--APALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-----GAAVTVLTARLE-----NPFG  140 (459)
T ss_pred             EecCCCCCHHHHHHHH--HHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCc
Confidence            6667778999998864  34443   3599999998  6788999999999764     366777766543     3345


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHF  261 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~df  261 (616)
                      ++    .+.+|. .++|..+.++|......               -.+++..+|||+++|+++ .++..-.....-.+.+
T Consensus       141 ~g----~v~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~  200 (459)
T PRK14355        141 YG----RIVRDA-DGRVLRIVEEKDATPEE---------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY  200 (459)
T ss_pred             CC----EEEEcC-CCCEEEEEEcCCCChhH---------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence            66    566774 67899999876311000               013567899999999864 4443211100001123


Q ss_pred             hhhhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEEC
Q 007143          262 VKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQS  337 (616)
Q Consensus       262 v~~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~  337 (616)
                      +.++++..+ .|.++++|.++ +|  |.+++++++|.++++.+..+....+. +...+.. .......+++++++++.|+
T Consensus       201 ~~d~i~~l~~~g~~v~~~~~~-~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~-~~~~~i~~~v~ig~~~~I~  278 (459)
T PRK14355        201 LTDIVAMAAAEGLRCLAFPVA-DPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID-PETTYIDRGVVIGRDTTIY  278 (459)
T ss_pred             HHHHHHHHHHCCCeEEEEEcC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC-CCceEECCCeEEcCCCEEe
Confidence            444444443 45689999987 55  88999999999998755543211110 0000111 1123445678888899999


Q ss_pred             CCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCc
Q 007143          338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGV  403 (616)
Q Consensus       338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v  403 (616)
                      ++|.|++++.||++|.|+++++|.+|+||++|.|+.+|+|.+++|++++.||.++++. ++.|++++
T Consensus       279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~  345 (459)
T PRK14355        279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHV  345 (459)
T ss_pred             CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCC
Confidence            9999999999999999999999999999999999999999988888888887776663 33333333

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=5.4e-36  Score=329.70  Aligned_cols=361  Identities=17%  Similarity=0.211  Sum_probs=259.3

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |+|||||+|+|+||+|   .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+.+++++.+  |      .+.++
T Consensus         1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--~------~i~~~   69 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--R------DVNWV   69 (451)
T ss_pred             CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--C------CcEEE
Confidence            7899999999999997   78999999999999999999999999999999999988899998865  2      24455


Q ss_pred             eCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      .+....|++++++..  ...+.  +.|+++.||+  +...++..+++.|++.       .+|+++.+..     +..+++
T Consensus        70 ~~~~~~G~~~ai~~a--~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-------~~~~~~~~~~-----~~~~~g  135 (451)
T TIGR01173        70 LQAEQLGTGHAVLQA--LPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN-------GITLLTAKLP-----DPTGYG  135 (451)
T ss_pred             EcCCCCchHHHHHHH--HHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC-------CEEEEEEecC-----CCCCCC
Confidence            555567899888864  34453  3499999998  5677899999988652       2445544432     234566


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK  263 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~  263 (616)
                          ++.+|+ +++|..+.|+|......      .         ...++.+|+|++++++| .++.+.+.-..-...++.
T Consensus       136 ----~v~~d~-~g~v~~~~ek~~~~~~~------~---------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~  195 (451)
T TIGR01173       136 ----RIIREN-DGKVTAIVEDKDANAEQ------K---------AIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT  195 (451)
T ss_pred             ----EEEEcC-CCCEEEEEEcCCCChHH------h---------cCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence                566764 57899999886421100      0         12356789999999985 444432110000011233


Q ss_pred             hhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEECCC
Q 007143          264 GLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRS  339 (616)
Q Consensus       264 ~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~~~  339 (616)
                      .++...+ .|.++++|.+. +|  |.++++++.|..+...+..+-...+. +...+ .........+++.+++++.|+++
T Consensus       196 ~~~~~l~~~g~~v~~~~~~-~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ig~~~~i~~~  273 (451)
T TIGR01173       196 DVIALAVADGETVRAVQVD-DSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL-RDPARFDIRGTVEIGRDVEIDPN  273 (451)
T ss_pred             HHHHHHHHCCCeEEEEEcC-ChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE-ecCCeEEECCccEECCCCEEcCC
Confidence            3333332 45789999886 66  78899999988776544332111110 11111 11123345677889999999999


Q ss_pred             CEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEEC
Q 007143          340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLS  418 (616)
Q Consensus       340 ~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg  418 (616)
                      +.|++++.||++|.|++++.|++++||++|.|+++|.|.+++|+++|.||++++|. +++|+++|+||+++.+. +++||
T Consensus       274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~-~~~ig  352 (451)
T TIGR01173       274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK-NARIG  352 (451)
T ss_pred             eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec-CcEEC
Confidence            99999999999999999999999999999999999999999999999999999997 68999999888887654 44555


Q ss_pred             CC-----------cEECCCCEECCCCEEcc
Q 007143          419 FK-----------VVIGERFVVPAHSKVSL  437 (616)
Q Consensus       419 ~~-----------v~Ig~~~~v~~~~~v~~  437 (616)
                      ++           |.||.++.|++++++..
T Consensus       353 ~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~  382 (451)
T TIGR01173       353 KGSKAGHLSYLGDAEIGSNVNIGAGTITCN  382 (451)
T ss_pred             CCcEecceeeEeeeEEcCCcEECCCeEEeC
Confidence            43           45555666666655543

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=6.6e-36  Score=331.47  Aligned_cols=335  Identities=16%  Similarity=0.177  Sum_probs=239.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ..+.|||||+|.|+||+|   .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+++....      ..+.
T Consensus         3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~------~~~~   73 (482)
T PRK14352          3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA------PEVD   73 (482)
T ss_pred             CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC------CccE
Confidence            357899999999999997   6899999999999999999999999999999999998889998886521      1345


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc----CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ  180 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~  180 (616)
                      ++.++...|++++++....  .+.    ++||+++||+  +...+|..+++.|++.     ++.+|++..+..     +.
T Consensus        74 ~~~~~~~~Gt~~si~~al~--~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~-----~~~~~v~~~~~~-----~p  141 (482)
T PRK14352         74 IAVQDEQPGTGHAVQCALE--ALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE-----GNAVTVLTTTLD-----DP  141 (482)
T ss_pred             EEeCCCCCCcHHHHHHHHH--HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEeecC-----CC
Confidence            5666677899999886432  332    3499999998  4567999999999864     356666655443     44


Q ss_pred             cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh-hhcCCChhhHHH
Q 007143          181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL-FTDNFDYQHLRR  259 (616)
Q Consensus       181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l-f~dnfd~q~lr~  259 (616)
                      .+|+    .+..+. .++|..+.|||......               ...+++.+|+|++++++|.. +..-+....-..
T Consensus       142 ~~yg----~~~~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e  201 (482)
T PRK14352        142 TGYG----RILRDQ-DGEVTAIVEQKDATPSQ---------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGE  201 (482)
T ss_pred             CCCC----EEEECC-CCCEEEEEECCCCCHHH---------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCc
Confidence            5676    555553 67899999997632110               11345789999999999853 332111000001


Q ss_pred             Hhhhhhhhccc-cCceEEEEEccccchhhccChhhH------HHHhhhhhccccccccCCCcccCCCcceeeecceEEcC
Q 007143          260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY------DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL  332 (616)
Q Consensus       260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY------~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~  332 (616)
                      .++.++++..+ .|.++++|.++ +||.+++.++.|      ..++++++..|.-+- + . .. .....+..+++++++
T Consensus       202 ~~l~d~i~~l~~~g~~V~~~~~~-g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g-~-~-~~-~~~~~~i~~~v~ig~  276 (482)
T PRK14352        202 LYLTDVLAIAREAGHRVGAHHAD-DSAEVAGVNDRVQLAALGAELNRRIVEAWMRAG-V-T-IV-DPATTWIDVDVTIGR  276 (482)
T ss_pred             EeHHHHHHHHHHCCCeEEEEecC-CcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCC-C-E-EE-CCCeEEEeCCEEECC
Confidence            23344444433 45689999987 899999988887      555666666553211 0 0 00 011345667899999


Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCC
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAG  408 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~  408 (616)
                      ++.|++++.|+++++||++|.|++++.|.+++||++|.|+. +.+.+++|++++.||.+|.+. +++|++++.||.+
T Consensus       277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~  352 (482)
T PRK14352        277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF  352 (482)
T ss_pred             CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence            99999999999999999999999999998888888888763 667777777777777777764 5666665555543

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1e-35  Score=328.00  Aligned_cols=313  Identities=13%  Similarity=0.191  Sum_probs=198.5

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .|+|||||+|.|+||++   .+||+|+|++|+|||+|++++|..+|+++++|++++..+++++++...        .+.+
T Consensus         5 ~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------~~~~   73 (456)
T PRK09451          5 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------PLNW   73 (456)
T ss_pred             CceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC--------CcEE
Confidence            48999999999999984   689999999999999999999999999999999998888999988541        3556


Q ss_pred             EeCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      +.++...|++++++...  .++.  +.||+++||+  +.+.++..+++.|++.     +  +++++.+..     .+.+|
T Consensus        74 i~~~~~~Gt~~al~~a~--~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-----~--~~i~~~~~~-----~~~~y  139 (456)
T PRK09451         74 VLQAEQLGTGHAMQQAA--PFFADDEDILMLYGDVPLISVETLQRLRDAKPQG-----G--IGLLTVKLD-----NPTGY  139 (456)
T ss_pred             EECCCCCCcHHHHHHHH--HhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC-----C--EEEEEEEcC-----CCCCc
Confidence            66667789999998643  3343  3499999998  6778999999887542     2  223333322     23467


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCChhhHHHHhh
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRRHFV  262 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~q~lr~dfv  262 (616)
                      +    ++ .+. .++|..+.|||......               ...++..+|+|++++++|. ++..-.+...-...++
T Consensus       140 G----~v-~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l  198 (456)
T PRK09451        140 G----RI-TRE-NGKVVGIVEQKDATDEQ---------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYI  198 (456)
T ss_pred             e----EE-Eec-CCeEEEEEECCCCChHH---------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeH
Confidence            6    54 443 67999999998521110               0134678999999998885 4433211100012344


Q ss_pred             hhhhhccc-cCceEEEEEcc-----ccc--hhhccChhhHHHHhh--hhhccccccccCCCcccCCCcceeeecceEEcC
Q 007143          263 KGLLLDDI-MGYKIFTHEIH-----SSY--AARIDNYRSYDIVSK--DIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL  332 (616)
Q Consensus       263 ~~~l~~~i-~g~~I~~~~~~-----~~y--~~~V~s~~sY~~a~~--dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~  332 (616)
                      .++++..+ .|.++++|...     .+|  |.+++++++|+++++  .++..-...+.|..        ....+++.++.
T Consensus       199 ~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~--------~~~~~~~~ig~  270 (456)
T PRK09451        199 TDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPAR--------FDLRGTLTHGR  270 (456)
T ss_pred             HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCE--------EEECCcEEECC
Confidence            45555443 45789998632     245  667999999999874  23221100011110        11113344555


Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I  394 (616)
                      ++.|+++|.|.+++.||++|.|+++|.|.+|+||++|.|+++|.|.+++|++++.|++++.|
T Consensus       271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i  332 (456)
T PRK09451        271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARL  332 (456)
T ss_pred             CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEE
Confidence            55555555555555555555555555555555555555555555544444444444444433

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=7.1e-36  Score=297.07  Aligned_cols=214  Identities=49%  Similarity=0.848  Sum_probs=184.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-C-CcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ-P-NFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~-~-~~~i~  106 (616)
                      +||||||+|+|+||+|+|..+||||+||+|+|||+|+|++|.++|+++|+|+++++.+++++|+++..|+.. . .+.+.
T Consensus         1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~   80 (217)
T cd04197           1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI   80 (217)
T ss_pred             CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence            689999999999999999999999999999999999999999999999999999999999999988654321 1 24677


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD  186 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~  186 (616)
                      ++.+++..++|+|++.+.++..+.++||+++||++++.+|.++++.|+++++.++++.||+++++..+.   .+++++..
T Consensus        81 ~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~---~~~~~~~~  157 (217)
T cd04197          81 IIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPP---HRTRRTGE  157 (217)
T ss_pred             EEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCc---cccccCCC
Confidence            777778889999999887777778889999999999999999999999976666789999999887643   22345444


Q ss_pred             ceEEEEeCCCCeEEEeeecCCCCCc-ceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143          187 ELFMAIDPNTKQLLYYEDKADHSKG-TICLDKMLLAENPSISLHNDKQDCYIDICSPEVL  245 (616)
Q Consensus       187 ~~vv~id~~~~rvl~~~e~p~~~~~-~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl  245 (616)
                      ..++.+|.++++|+++.++|..+.. .+.+++.++.+++.+.+++||+|+|||||+|+||
T Consensus       158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence            4588888777999999999975432 4568999999999999999999999999999985

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.4e-34  Score=318.22  Aligned_cols=363  Identities=14%  Similarity=0.152  Sum_probs=219.1

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.+.|||||+|.|+||++   ..||+|+|++|+|||+|+|+.|..+|+++++|++++..+.+.+++...      +..+
T Consensus         3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~------~~~~   73 (446)
T PRK14353          3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI------APDA   73 (446)
T ss_pred             cccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc------CCCc
Confidence            3458999999999999985   679999999999999999999999999999999999888898888542      1224


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccc---cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ  180 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i---~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~  180 (616)
                      .++.+....|++++++...  ..+   .++|++++||+  +....|..+++.+ +.     ++.+++...+..     +.
T Consensus        74 ~~~~~~~~~G~~~sl~~a~--~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~-----~~~~~i~~~~~~-----~~  140 (446)
T PRK14353         74 EIFVQKERLGTAHAVLAAR--EALAGGYGDVLVLYGDTPLITAETLARLRERL-AD-----GADVVVLGFRAA-----DP  140 (446)
T ss_pred             eEEEcCCCCCcHHHHHHHH--HHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hc-----CCcEEEEEEEeC-----CC
Confidence            4445556678888888543  333   34599999998  4556788888743 32     244455544432     33


Q ss_pred             cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHH
Q 007143          181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRR  259 (616)
Q Consensus       181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~  259 (616)
                      .+++    ++.+  +.++|..+.|||......               ....+...|+|+++++.+ +++..-..-+.-..
T Consensus       141 ~~~g----~~~~--~~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~  199 (446)
T PRK14353        141 TGYG----RLIV--KGGRLVAIVEEKDASDEE---------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE  199 (446)
T ss_pred             Ccce----EEEE--CCCeEEEEEECCCCChHH---------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence            4565    4445  357899999987521100               012355689999998765 44432111000011


Q ss_pred             Hhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhcc----cc---cc-ccCCCcccCCCcceeeecceEE
Q 007143          260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR----WT---YP-YVPDVKFCGNRATKLERRGMYR  330 (616)
Q Consensus       260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r----~~---~p-~~p~~~~~~~~~~~~~~~~i~~  330 (616)
                      .++.++++..+ .|.+++++..+..+|.+|+++++|..++..+..+    +.   .+ +.|..        .+......+
T Consensus       200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I  271 (446)
T PRK14353        200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPET--------VFFSYDTVI  271 (446)
T ss_pred             EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCe--------EEECCceEE
Confidence            23344444432 5678999988756899999999998887533221    10   01 11211        112223334


Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCc-----------------
Q 007143          331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC-----------------  392 (616)
Q Consensus       331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~-----------------  392 (616)
                      ++++.|++++.|++++.||++|.|++++.|.+++||++|.||+++.|. +++|+++|.||.+|                 
T Consensus       272 ~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~  351 (446)
T PRK14353        272 GRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLT  351 (446)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCee
Confidence            444444444444444444444444444444445555555555555553 44445554444444                 


Q ss_pred             EEeceEECCCcEECCCCEE-------CCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          393 ELRHVIVCDGVIMKAGAVL-------KPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I-------~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      .+.+++||++|.||.++++       ..+++||++|.||.+++|.++++|+...
T Consensus       352 ~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~  405 (446)
T PRK14353        352 YIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGA  405 (446)
T ss_pred             EEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCC
Confidence            4445556666666665544       2245566666666666555555555443

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.1e-35  Score=323.25  Aligned_cols=353  Identities=15%  Similarity=0.147  Sum_probs=241.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.|||||||.|+||+   ..+||+|+|++|+|||+|+++.|...++++++|++++..+.+++++..        ..+.+
T Consensus         5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~~~~   73 (456)
T PRK14356          5 TTGALILAAGKGTRMH---SDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------EDARF   73 (456)
T ss_pred             ceeEEEEcCCCCccCC---CCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------cCceE
Confidence            4899999999999997   378999999999999999999999999999999999988888887753        23556


Q ss_pred             EeCCCccCHHHHHHHHHhccccc----CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      +.++...|++++++...  ..+.    ++||+++||+  +...++..+++.|+.       +..|++..+..     .+.
T Consensus        74 v~~~~~~Gt~~al~~a~--~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-------~~~~l~~~~~~-----~~~  139 (456)
T PRK14356         74 VLQEQQLGTGHALQCAW--PSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-------ADLAFMTLTLP-----DPG  139 (456)
T ss_pred             EEcCCCCCcHHHHHHHH--HHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-------CCEEEEEEEcC-----CCC
Confidence            66666789999888643  3342    4599999998  566789999988752       44555555443     234


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhh-hcCCChhhHHHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF-TDNFDYQHLRRH  260 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf-~dnfd~q~lr~d  260 (616)
                      .|+    ++..  +.++|..+.|+|.....       ..  .+    .++++.+|||+++++++..+ ..-.+...-...
T Consensus       140 ~~g----~v~~--~~g~V~~~~ek~~~~~~-------~~--~~----~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~  200 (456)
T PRK14356        140 AYG----RVVR--RNGHVAAIVEAKDYDEA-------LH--GP----ETGEVNAGIYYLRLDAVESLLPRLTNANKSGEY  200 (456)
T ss_pred             Cce----EEEE--cCCeEEEEEECCCCChH-------Hh--hh----hcCeEEEEEEEEEHHHHHHHHHhccCcccCCcE
Confidence            566    4444  36899999988652100       00  00    14567899999999988643 221110000011


Q ss_pred             hhhhhhhcc-ccCceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECC
Q 007143          261 FVKGLLLDD-IMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR  338 (616)
Q Consensus       261 fv~~~l~~~-i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~  338 (616)
                      ++..++... ..|.+++++...+. +|.+|+++++|..+...+..+....+.+..............+++++++++.|..
T Consensus       201 ~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~  280 (456)
T PRK14356        201 YITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYG  280 (456)
T ss_pred             EHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeC
Confidence            223333332 25678999988632 5799999999998876655442211111100000001122233445555555555


Q ss_pred             CCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEE
Q 007143          339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       339 ~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      .|.|++++.||++|.|+++|+|.+++||++|.|+++|.|.+++|+++|.||++++|. +++|++++.||+++.|. +++|
T Consensus       281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~-~~~i  359 (456)
T PRK14356        281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK-KAVL  359 (456)
T ss_pred             CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee-eeEe
Confidence            566666788899999999999988999999999999999999999999999999886 78888888888877664 3555


Q ss_pred             CCCcEECC
Q 007143          418 SFKVVIGE  425 (616)
Q Consensus       418 g~~v~Ig~  425 (616)
                      ++++.|+.
T Consensus       360 ~~~~~i~~  367 (456)
T PRK14356        360 GKGAKANH  367 (456)
T ss_pred             cCCcEecc
Confidence            55544433

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4e-34  Score=313.07  Aligned_cols=363  Identities=16%  Similarity=0.129  Sum_probs=236.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.++|||||+|.|+||++   .+||+|+|++|+|||+|+++.|..+ +++|+|++++..+++++++.+..      ..+.
T Consensus         1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~------~~v~   70 (430)
T PRK14359          1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF------PGVI   70 (430)
T ss_pred             CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC------CceE
Confidence            357899999999999997   7899999999999999999999987 78999999999999999987521      1244


Q ss_pred             EEeC--CCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIES--HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~--~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.+  +...|++++++.+  + ...+.||+++||...-  ....+++|.+.     ++.+|+.+.+..     ++.+++
T Consensus        71 ~~~~~~~~~~gt~~al~~~--~-~~~d~vlv~~gD~p~~--~~~~l~~l~~~-----~~~~~v~~~~~~-----~~~~~g  135 (430)
T PRK14359         71 FHTQDLENYPGTGGALMGI--E-PKHERVLILNGDMPLV--EKDELEKLLEN-----DADIVMSVFHLA-----DPKGYG  135 (430)
T ss_pred             EEEecCccCCCcHHHHhhc--c-cCCCeEEEEECCccCC--CHHHHHHHHhC-----CCCEEEEEEEcC-----CCccCc
Confidence            4433  3457899999853  1 1234599999998321  12344444442     244566665543     233565


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC-CChhhHHHHhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-FDYQHLRRHFVK  263 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn-fd~q~lr~dfv~  263 (616)
                          .+.++  ++++..+.++|.....             .  ....+.++|+|++++++|..+... .....-...++.
T Consensus       136 ----~v~~d--~g~v~~i~e~~~~~~~-------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~  194 (430)
T PRK14359        136 ----RVVIE--NGQVKKIVEQKDANEE-------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLT  194 (430)
T ss_pred             ----EEEEc--CCeEEEEEECCCCCcc-------------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehh
Confidence                45554  5799999887642110             0  113567899999999999855321 100000112334


Q ss_pred             hhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccc--------cccCCCcccCCCcceeeecceEEcCCc
Q 007143          264 GLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTY--------PYVPDVKFCGNRATKLERRGMYRALEI  334 (616)
Q Consensus       264 ~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~--------p~~p~~~~~~~~~~~~~~~~i~~~~~v  334 (616)
                      ++++..+ .|.+++++..+..+|.+|+++++|..+...+..+...        +..|...+...  -....+.++++.++
T Consensus       195 d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~~~i~g~~~ig~~~  272 (430)
T PRK14359        195 DIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIES--GVEFEGECELEEGV  272 (430)
T ss_pred             hHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECC--CcEEcCceEECCCC
Confidence            4443332 4688999988757999999999999997554433211        01111111111  11233456666666


Q ss_pred             EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCC----------EECCCcEEeceEECCCcE
Q 007143          335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNV----------IIEDGCELRHVIVCDGVI  404 (616)
Q Consensus       335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v----------~Ig~~~~I~~siIg~~v~  404 (616)
                      .|++++.|+ ++.||++|.|++ ++|.+|+||++|.|+++|+|.+|+||++|          +||.++.|.+|+||++|.
T Consensus       273 ~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~  350 (430)
T PRK14359        273 RILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTN  350 (430)
T ss_pred             EECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCE
Confidence            666666665 677777777765 56678888888888888888877777777          555556667788888888


Q ss_pred             ECCCCEECC-------CCEECCCcEECCCCEECCCCEEcccc
Q 007143          405 MKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       405 Ig~~~~I~~-------g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ||.++++..       +++||++|.||.++.|.++.+|+...
T Consensus       351 ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  392 (430)
T PRK14359        351 IGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNV  392 (430)
T ss_pred             ECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCC
Confidence            888765542       25666666666666555555555443

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2e-34  Score=297.16  Aligned_cols=355  Identities=19%  Similarity=0.245  Sum_probs=263.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.+||||+|.||||+.   .+||.|-||+|+||++|+|+.....+.+++.+|.+|.++++++.+.+.       .++.+
T Consensus         2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~v~~   71 (460)
T COG1207           2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DDVEF   71 (460)
T ss_pred             CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cCceE
Confidence            57899999999999997   899999999999999999999999999999999999999999998752       25788


Q ss_pred             EeCCCccCHHHHHHHHHhcccc----cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          108 IESHNIISAGDALRLIYEQNVI----HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i----~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      +.+.+.+|||+|+...  +..+    .+++|+++||+  |+...|+.+++.|...     ++.+|++.....     .++
T Consensus        72 v~Q~eqlGTgHAV~~a--~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~-----~~~~tvLt~~~~-----dP~  139 (460)
T COG1207          72 VLQEEQLGTGHAVLQA--LPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAH-----GAAATVLTAELD-----DPT  139 (460)
T ss_pred             EEecccCChHHHHHhh--hhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhc-----CCceEEEEEEcC-----CCC
Confidence            8899999999999964  4445    24699999999  7777899999999875     366666666544     344


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhh-HHHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH-LRRH  260 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~-lr~d  260 (616)
                      .||    =++.+ ..++|..+.|..+.....        +       .-..+++|+|+|....|.-+-....-.. -.+-
T Consensus       140 GYG----RIvr~-~~g~V~~IVE~KDA~~ee--------k-------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY  199 (460)
T COG1207         140 GYG----RIVRD-GNGEVTAIVEEKDASEEE--------K-------QIKEINTGIYAFDGAALLRALPKLSNNNAQGEY  199 (460)
T ss_pred             Ccc----eEEEc-CCCcEEEEEEcCCCCHHH--------h-------cCcEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence            666    34444 367888888876532111        0       1234678999998886653322111000 0123


Q ss_pred             hhhhhhhc-cccCceEEEEEccc-cchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEE-C
Q 007143          261 FVKGLLLD-DIMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ-S  337 (616)
Q Consensus       261 fv~~~l~~-~i~g~~I~~~~~~~-~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i-~  337 (616)
                      ++.+++.- ...|.++.++..++ .-...|++-..+..+.+-+-+|-..                    -+...++++ .
T Consensus       200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~--------------------~~m~~GVtl~d  259 (460)
T COG1207         200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAE--------------------KLMLAGVTLID  259 (460)
T ss_pred             eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHH--------------------HHHHcCcEEeC
Confidence            44555443 23678999988873 2456677766666655444333110                    001122222 1


Q ss_pred             -CCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCC
Q 007143          338 -RSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV  415 (616)
Q Consensus       338 -~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~  415 (616)
                       ....|...+.||.+|.|.+++.| ++++||++|+||++|+|.+|.|++++.|...++|++|.|+++|.||+.+.+.||+
T Consensus       260 P~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~  339 (460)
T COG1207         260 PATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA  339 (460)
T ss_pred             CCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC
Confidence             23456677778888888888888 4888999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcEECC-----CCEECCCCEEccccCCCCC
Q 007143          416 VLSFKVVIGE-----RFVVPAHSKVSLLQQPTVH  444 (616)
Q Consensus       416 vIg~~v~Ig~-----~~~v~~~~~v~~~~~~~~~  444 (616)
                      .|+++++||.     ++.|++|++++|++|.+|-
T Consensus       340 ~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA  373 (460)
T COG1207         340 VLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDA  373 (460)
T ss_pred             cccCCCeEeeeEEEecccccCCccccceeeeccc
Confidence            9999999998     5568899999999999974

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=2e-33  Score=309.92  Aligned_cols=299  Identities=17%  Similarity=0.207  Sum_probs=188.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.++|||||+|.|+||++   .+||+|+|++|+|||+|+|+.|.++|+++++|+++++.+++++|+...         +.
T Consensus         1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------~~   68 (458)
T PRK14354          1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------SE   68 (458)
T ss_pred             CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC---------cE
Confidence            457999999999999985   789999999999999999999999999999999999989999887541         33


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      ++.+....|++++++...  .++.   +.||++.||.  +...+|..+++.|++.     ++..|+++....     +..
T Consensus        69 ~~~~~~~~g~~~al~~a~--~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-----~~~~t~~~~~~~-----~~~  136 (458)
T PRK14354         69 FALQEEQLGTGHAVMQAE--EFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-----KAAATILTAIAE-----NPT  136 (458)
T ss_pred             EEEcCCCCCHHHHHHHHH--HHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-----CCceEEEEEEcC-----CCC
Confidence            444556788999888643  3343   3499999996  5677999999999764     356666665543     233


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhH-HhhhhcCCChhhHHHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV-LSLFTDNFDYQHLRRH  260 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~v-l~lf~dnfd~q~lr~d  260 (616)
                      +++    ++.+|+ +++|..+.++|...       +.-        -...+..+|+|+++++. ++.+..-..-..-...
T Consensus       137 ~~g----~v~~d~-~~~V~~~~ek~~~~-------~~~--------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~  196 (458)
T PRK14354        137 GYG----RIIRNE-NGEVEKIVEQKDAT-------EEE--------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY  196 (458)
T ss_pred             Cce----EEEEcC-CCCEEEEEECCCCC-------hHH--------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence            555    555664 67899999876311       000        01245688999999974 4554321100000011


Q ss_pred             hhhhhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccc-ccCCCcccCCCcceeeecceEEcCCcEE
Q 007143          261 FVKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYP-YVPDVKFCGNRATKLERRGMYRALEIEQ  336 (616)
Q Consensus       261 fv~~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p-~~p~~~~~~~~~~~~~~~~i~~~~~v~i  336 (616)
                      ++.+++...+ .+.++++|.++ ++  |.++.++.+|..++..+..++... +.+...+.. +...+..+++.+++++.+
T Consensus       197 ~~~d~~~~l~~~g~~v~~~~~~-g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~-~~~~~i~~~~~ig~~~~i  274 (458)
T PRK14354        197 YLTDVIEILKNEGEKVGAYQTE-DFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID-PESTYIDADVEIGSDTVI  274 (458)
T ss_pred             eHHHHHHHHHHCCCeEEEEecC-CcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC-CCeEEECCCcEECCCCEE
Confidence            1233333322 46789999886 45  456778888887765443322100 001110000 011223344445555555


Q ss_pred             CCCCEECCCcEECCCCEECCCCEEeceEECCCCEE
Q 007143          337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI  371 (616)
Q Consensus       337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~I  371 (616)
                      ++++.|++++.||++|.|++++.|.+++||++|.|
T Consensus       275 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I  309 (458)
T PRK14354        275 EPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTI  309 (458)
T ss_pred             eCCeEEecceEECCCCEECCCcEEeccEECCCCEE
Confidence            55555555566666666666666555544444444

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.6e-33  Score=306.28  Aligned_cols=315  Identities=17%  Similarity=0.218  Sum_probs=197.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |+|||||+|.|+||++   .+||+|+|++|+|||+|+|+.|...+ ++|+|++++..+.+++|+..       +  +.++
T Consensus         1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-------~--~~~~   67 (448)
T PRK14357          1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-------W--VKIF   67 (448)
T ss_pred             CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-------c--cEEE
Confidence            7899999999999985   78999999999999999999999975 89999999888888888754       1  3345


Q ss_pred             eCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      .++..+|++++++...  .++.  +.|++++||+  +.+.++.++++.|+++     ++.+|+++.+..     +..+|+
T Consensus        68 ~~~~~~g~~~ai~~a~--~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g  135 (448)
T PRK14357         68 LQEEQLGTAHAVMCAR--DFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK-----GADVTILVADLE-----DPTGYG  135 (448)
T ss_pred             ecCCCCChHHHHHHHH--HhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----CCCCcE
Confidence            5567789999998643  4453  3499999997  7788999999999764     467888887654     334666


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK  263 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~  263 (616)
                          ++.++  .+++ .+.++|..+...               -..++..+|+|++++++| +++.+-+....-...++.
T Consensus       136 ----~v~~d--~g~v-~~~e~~~~~~~~---------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~  193 (448)
T PRK14357        136 ----RIIRD--GGKY-RIVEDKDAPEEE---------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLT  193 (448)
T ss_pred             ----EEEEc--CCeE-EEEECCCCChHH---------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHH
Confidence                56665  4677 666655321100               012467899999999985 445421100000011222


Q ss_pred             hhhhccccCceEEEEEccccchh--hccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEECCCC
Q 007143          264 GLLLDDIMGYKIFTHEIHSSYAA--RIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRSA  340 (616)
Q Consensus       264 ~~l~~~i~g~~I~~~~~~~~y~~--~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~  340 (616)
                      +++...   .++++|... +||.  .++++..|..+...+-.+....+. +...+.. ....+..+++.++.++.|++.+
T Consensus       194 d~i~~~---~~v~~~~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~Ig~~~~i~~~~  268 (448)
T PRK14357        194 DAVNFA---EKVRVVKTE-DLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILD-PNTTYIHYDVEIGMDTIIYPMT  268 (448)
T ss_pred             HHHHhh---hheeEEecC-CHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeC-CCcEEEccceEECCCcEEcCCc
Confidence            333322   347787775 6754  566887777654332211000000 1101000 0112334455666666666666


Q ss_pred             EECCCcEECCCCEECCCCEEeceEECCCCEE----------------CCCCEEe-ceEECCCCEECCCcEEe
Q 007143          341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTI----------------GSNVLIE-GSYIWDNVIIEDGCELR  395 (616)
Q Consensus       341 ~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~I----------------g~~~~I~-~s~I~~~v~Ig~~~~I~  395 (616)
                      .|++++.||++|.|++++.|.+|+||++|.|                |++++|. +++|+++++||.++.+.
T Consensus       269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~  340 (448)
T PRK14357        269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIK  340 (448)
T ss_pred             EEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeee
Confidence            6666666777777777666655555555544                4444442 35555555555555443

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=6.6e-32  Score=297.28  Aligned_cols=319  Identities=19%  Similarity=0.255  Sum_probs=197.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      +.+||||+|.|+||++   .+||+|+|++|+|||+|+|+.|..+|+.+++|++++..+++.+++.+.       ..+.++
T Consensus         2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~-------~~i~~v   71 (450)
T PRK14360          2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL-------PGLEFV   71 (450)
T ss_pred             ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc-------CCeEEE
Confidence            6799999999999986   789999999999999999999999999999999999888898888641       135566


Q ss_pred             eCCCccCHHHHHHHHHhc-ccccCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          109 ESHNIISAGDALRLIYEQ-NVIHGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~-~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      .+....|++++++..... ....++||++.||+  +...+|..+++.|++.     ++.+|++..+..     ++.+++ 
T Consensus        72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~-----~~~~~~~~~~~~-----~~~~~g-  140 (450)
T PRK14360         72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS-----NADVTLLTARLP-----NPKGYG-  140 (450)
T ss_pred             EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEecC-----CCCCcc-
Confidence            666667888888754322 11134599999998  6788999999999864     356676655543     334566 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhh-cCCChhhHHHHhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFT-DNFDYQHLRRHFVKG  264 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~-dnfd~q~lr~dfv~~  264 (616)
                         ++.+|+ +++|..+.++|......               -.+++..+|+|++++++|..+. +-.....-.+.++.+
T Consensus       141 ---~~~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td  201 (450)
T PRK14360        141 ---RVFCDG-NNLVEQIVEDRDCTPAQ---------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTD  201 (450)
T ss_pred             ---EEEECC-CCCEEEEEECCCCChhH---------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHH
Confidence               566764 68999999987521000               0245788999999998775432 211100001223344


Q ss_pred             hhhccccCceEEEEEccccch--hhccChhhHHHHhhh----hhccccccccCCCcccCCCcceeeecceEEcCCcEECC
Q 007143          265 LLLDDIMGYKIFTHEIHSSYA--ARIDNYRSYDIVSKD----IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR  338 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~y~--~~V~s~~sY~~a~~d----il~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~  338 (616)
                      +++..   ..++.+.+. +++  ..++++..+..+..-    +...|..+-.+   +... ......++++++.++.|++
T Consensus       202 ~i~~~---~~~~~~~v~-~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~---~i~~-~~~~i~~~~~ig~~~~i~~  273 (450)
T PRK14360        202 TVSLL---DPVMAVEVE-DYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT---FIDP-ASCTISETVELGPDVIIEP  273 (450)
T ss_pred             HHHHH---hhceEEecC-CHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE---EecC-CeEEEeCCEEECCCCEECC
Confidence            43332   124555554 444  448888888765443    22345333222   1100 0111223444555555555


Q ss_pred             CCEECCCcEECCCCEECCCCEEec----------------eEECCCCEECCCCEEe-ceEECCCCEECCCcEEe
Q 007143          339 SAQVGSFTVIGYGTKIGSNSKISD----------------SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR  395 (616)
Q Consensus       339 ~~~I~~~~~Ig~~~~Ig~~~~I~~----------------s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~  395 (616)
                      ++.|++++.||++|.|++++.|.+                ++||++|.||++|+|. ++.|+++|.|+.++.|.
T Consensus       274 ~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~  347 (450)
T PRK14360        274 QTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK  347 (450)
T ss_pred             CCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence            555555555555555555554443                3444444555555553 45555555555555443

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=2.2e-33  Score=278.57  Aligned_cols=209  Identities=27%  Similarity=0.434  Sum_probs=173.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      |||||||||+|+||+|+|...||+|+|++|+|||+|+|++|.++|+++|+|++++. .+++++++....|....+..+.+
T Consensus         1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~   80 (214)
T cd04198           1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT   80 (214)
T ss_pred             CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence            69999999999999999999999999999999999999999999999999999964 56788888765443322344555


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC----Cccccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI----THQSRL  183 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~----~~~~r~  183 (616)
                      +......|+|++++.+..  .+.++|+|++||++++.++..++++|++.     ++.|||++.+..+...    +.+.+.
T Consensus        81 ~~~~~~~gt~~al~~~~~--~i~~d~lv~~~D~i~~~~l~~~l~~h~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~  153 (214)
T cd04198          81 IVLDEDMGTADSLRHIRK--KIKKDFLVLSCDLITDLPLIELVDLHRSH-----DASLTVLLYPPPVSSEQKGGKGKSKK  153 (214)
T ss_pred             ecCCCCcChHHHHHHHHh--hcCCCEEEEeCccccccCHHHHHHHHhcc-----CCcEEEEEeccCCcccccCCcccccC
Confidence            556778999999997654  46788999999999999999999999874     5889999988654310    013455


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL  245 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl  245 (616)
                      ..+..++++|++++||++|....+ .+..+.+++.+|++||++.+++||+|||||||+++|+
T Consensus       154 ~~~~~~~~~d~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         154 ADERDVIGLDEKTQRLLFITSEED-LDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CCCCceEEEcCCCCEEEEECCHHH-hhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            556779999999999999988543 2345677999999999999999999999999999875

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=100.00  E-value=4.8e-32  Score=269.35  Aligned_cols=211  Identities=43%  Similarity=0.717  Sum_probs=165.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC-CCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-QPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~-~~~~~i~~  107 (616)
                      |||||||+|+|+||.|+|...||+|+||+|+|||+|+|++|..+|+++|+|+++++.+.+.+|+.+..|.. ..+..+.+
T Consensus         1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (216)
T cd02507           1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV   80 (216)
T ss_pred             CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999998866531 11233433


Q ss_pred             Ee--CCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IE--SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~--~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      +.  ..+..|++++++  .++..+.++|||++||+++++++..++++   +|...+++.|||++....+.......+...
T Consensus        81 ~~~~~~~~~Gta~~l~--~~~~~i~~dflv~~gD~i~~~~l~~~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (216)
T cd02507          81 ITSDLCESAGDALRLR--DIRGLIRSDFLLLSCDLVSNIPLSELLEE---RRKKDKNAIATLTVLLASPPVSTEQSKKTE  155 (216)
T ss_pred             EEccCCCCCccHHHHH--HHhhcCCCCEEEEeCCEeecCCHHHHHHH---HHhhCcccceEEEEEeccCCCCccccccCC
Confidence            33  334556666655  46677888999999999999999999987   222334566776666654431101023444


Q ss_pred             CceEEEEeCCC--CeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143          186 DELFMAIDPNT--KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL  245 (616)
Q Consensus       186 ~~~vv~id~~~--~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl  245 (616)
                      +..++++|+++  .++++|.+++... ....++..+|.+++++.+++||+|||||||+|+|+
T Consensus       156 ~~~~i~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         156 EEDVIAVDSKTQRLLLLHYEEDLDED-LELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             CCcEEEEcCCCCceEEEechhhcCcC-cccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence            55689999887  7888999887532 33447999999999999999999999999999975

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.97  E-value=1.4e-30  Score=269.76  Aligned_cols=239  Identities=15%  Similarity=0.217  Sum_probs=183.5

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCC---------
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF---------   98 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~---------   98 (616)
                      .|+|||||||+||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+... |.         
T Consensus         3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~-~~~~~~~~~~~   81 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTS-YELESLLEQRV   81 (297)
T ss_pred             ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhch-HHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999999999999999999999642 21         


Q ss_pred             -----------CCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhhc
Q 007143           99 -----------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK  158 (616)
Q Consensus        99 -----------~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~~  158 (616)
                                 ...++++.++.+++.+|+|+|++.  ++.++. ++|+|+.||++++        +++.++++.|+++. 
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~--a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~-  158 (297)
T TIGR01105        82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILC--ARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETG-  158 (297)
T ss_pred             chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHH--HHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhC-
Confidence                       012567888888889999999995  455676 4599999999887        69999999997542 


Q ss_pred             cCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehHhhhcCCceEEEecc
Q 007143          159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK  232 (616)
Q Consensus       159 ~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl  232 (616)
                          +.++++.....     ...+||    ++.++.   ..+   +|..+.|||..+..                ..+++
T Consensus       159 ----~~~~~~~~~~~-----~~~~yG----vv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------~~s~~  209 (297)
T TIGR01105       159 ----RSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL  209 (297)
T ss_pred             ----CcEEEEEEcCC-----CCccce----EEEecccccCCCCeeeEeEEEECCCCccc----------------CCcCE
Confidence                34444443321     346888    787742   134   46899999853211                13578


Q ss_pred             ccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       233 ~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      +++|+|+|+|+++.++...-.... ....+.++++..+.+.+++++.+. ++|.+|+++++|..++.++
T Consensus       210 ~~~GiYi~~~~i~~~l~~~~~~~~-ge~~ltd~i~~l~~~~~v~~~~~~-g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       210 MAVGRYVLSADIWAELERTEPGAW-GRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             EEEEEEEECHHHHHHHhcCCCCCC-CeeeHHHHHHHHHhcCCEEEEEec-cEEECCCCHHHHHHHHHHH
Confidence            999999999999998865211110 111233444444456689999987 8999999999999998876

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=3.1e-31  Score=260.40  Aligned_cols=232  Identities=20%  Similarity=0.285  Sum_probs=190.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHh-cCCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~-~~~~~~~~~~i~  106 (616)
                      |||||||+|.|||++|+|...||.|+||.+||||.|.|+.|..+|+++|.|++++ +...+++++.+ ++|    +++++
T Consensus         1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~----gv~it   76 (286)
T COG1209           1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDF----GVDIT   76 (286)
T ss_pred             CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCcccc----CcceE
Confidence            7999999999999999999999999999999999999999999999999999987 68889999988 556    68999


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      ++.++++.|+++|+.  .+++++. ++|+|+.||.++.-+|.++++.+.++.     ...++++.++.     .++||| 
T Consensus        77 Y~~Q~~p~GlA~Av~--~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~-----~ga~i~~~~V~-----dP~rfG-  143 (286)
T COG1209          77 YAVQPEPDGLAHAVL--IAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEG-----SGATILLYEVD-----DPSRYG-  143 (286)
T ss_pred             EEecCCCCcHHHHHH--HHHhhcCCCceEEEecCceeccChHHHHHHHhccC-----CCcEEEEEEcC-----Ccccce-
Confidence            999999999999998  4678898 569999999977669999999887753     56678888876     567999 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHH-hhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH-FVKG  264 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~d-fv~~  264 (616)
                         |+.+|. +++++..+|||..+.                   ++|.-+|+|++.|.|++.+..--.-  -|.. -+.+
T Consensus       144 ---V~e~d~-~~~v~~l~EKP~~P~-------------------SNlAvtGlY~~d~~Vf~~~~~ikPS--~RGElEITd  198 (286)
T COG1209         144 ---VVEFDE-DGKVIGLEEKPKEPK-------------------SNLAVTGLYFYDPSVFEAIKQIKPS--ARGELEITD  198 (286)
T ss_pred             ---EEEEcC-CCcEEEeEECCCCCC-------------------CceeEEEEEEeChHHHHHHHcCCCC--CCCceEehH
Confidence               999986 459999999998553                   6788899999999999987642110  0111 1223


Q ss_pred             hhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          265 LLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       265 ~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      +++..+ .|.++...... ++|.+++++++|.+|+.-+..
T Consensus       199 ~i~~~i~~G~~~~~~~~~-G~WlDtGt~~slleA~~~i~~  237 (286)
T COG1209         199 AIDLYIEKGYLVVAILIR-GWWLDTGTPESLLEANNFVRT  237 (286)
T ss_pred             HHHHHHHcCcEEEEEEcc-ceEEecCChhhHHHHHHHHHH
Confidence            333333 56667766665 699999999999999988765

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.97  E-value=4.1e-30  Score=258.37  Aligned_cols=230  Identities=20%  Similarity=0.336  Sum_probs=185.3

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |+|||||+|.|+||+|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++.+|+.+  |....++.+.+.
T Consensus         1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~--~~~~~~~~i~~~   78 (233)
T cd06425           1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE--YEKKLGIKITFS   78 (233)
T ss_pred             CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc--ccccCCeEEEec
Confidence            789999999999999999999999999999999999999999999999999999999999999974  422234566665


Q ss_pred             eCCCccCHHHHHHHHHhccccc---CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          109 ESHNIISAGDALRLIYEQNVIH---GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      .+....|+++++...  +..+.   ++||+++||++++.++.++++.|+++     ++.+|+++.+..     +..+++ 
T Consensus        79 ~~~~~~G~~~al~~a--~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g-  145 (233)
T cd06425          79 IETEPLGTAGPLALA--RDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKH-----GAEGTILVTKVE-----DPSKYG-  145 (233)
T ss_pred             cCCCCCccHHHHHHH--HHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHc-----CCCEEEEEEEcC-----CccccC-
Confidence            556678999998864  34454   46999999999999999999999875     366788877653     345677 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL  265 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~  265 (616)
                         ++.+|.++++|+.+.+||....                   ++++++|||+++++++..+.+..  .++..++++.+
T Consensus       146 ---~v~~d~~~~~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~--~~~~~~~~~~l  201 (233)
T cd06425         146 ---VVVHDENTGRIERFVEKPKVFV-------------------GNKINAGIYILNPSVLDRIPLRP--TSIEKEIFPKM  201 (233)
T ss_pred             ---eEEEcCCCCEEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhcccCc--ccchhhhHHHH
Confidence               7888865789999999875221                   35678999999999999887643  22234555544


Q ss_pred             hhccccCceEEEEEccccchhhccChhhHHHHhhhhh
Q 007143          266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII  302 (616)
Q Consensus       266 l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil  302 (616)
                      +    ...++++|.++ +||.+|+++++|..+++.+|
T Consensus       202 ~----~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         202 A----SEGQLYAYELP-GFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             H----hcCCEEEEeeC-CEEEcCCCHHHHHHHHHHhC
Confidence            4    34689999997 89999999999999987653

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.97  E-value=5.5e-30  Score=259.32  Aligned_cols=234  Identities=23%  Similarity=0.396  Sum_probs=185.6

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEE-EcCCcHHHHHHHHHhcC-CCCCCCcEEE
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFV-FCCAHSKQVIDYLENSE-WFSQPNFTVK  106 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~v-v~~~~~~~i~~~l~~~~-~~~~~~~~i~  106 (616)
                      +|||||||+|+||+|+|..+||||+|++|+ |||+|+|++|..+|++++++ +++++.+++.+|+++.. |    ++++.
T Consensus         1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~----~~~i~   76 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKF----GVKIE   76 (248)
T ss_dssp             EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGG----TEEEE
T ss_pred             CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccc----cccce
Confidence            699999999999999999999999999999 99999999999999999555 55578899999998854 3    36799


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccC-----CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHG-----DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~-----dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      ++.+++..|+|+|++.+.  ..+..     +||+++||++++.++.+++++|+++..   ...+++...+..     +..
T Consensus        77 ~i~~~~~~Gta~al~~a~--~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-----~~~  146 (248)
T PF00483_consen   77 YIVQPEPLGTAGALLQAL--DFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNA---DGTVTLLVVPVE-----DPS  146 (248)
T ss_dssp             EEEESSSSCHHHHHHHTH--HHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSS---CESEEEEEEESS-----GGG
T ss_pred             eeecccccchhHHHHHHH--HHhhhccccceEEEEeccccccchhhhHHHhhhcccc---cccccccccccc-----ccc
Confidence            998888899999999643  44443     299999999999999999999999752   124555555443     456


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc---CCChhhHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD---NFDYQHLR  258 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d---nfd~q~lr  258 (616)
                      ++|    ++.+| ++++|+.+.|||....                  .+.++++|+|+++++++..+.+   +..   -.
T Consensus       147 ~~g----~v~~d-~~~~V~~~~EKP~~~~------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~---~~  200 (248)
T PF00483_consen  147 RYG----VVEVD-EDGRVIRIVEKPDNPN------------------ASNLINTGIYIFKPEIFDFLLEMIKENA---RG  200 (248)
T ss_dssp             GSE----EEEEE-TTSEEEEEEESCSSHS------------------HSSEEEEEEEEEETHHHHHHHHHHHTCT---TS
T ss_pred             cce----eeeec-cceeEEEEeccCcccc------------------cceeccCceEEEcchHHHHHhhhhhccc---hh
Confidence            788    88898 4789999999986321                  0567889999999999998842   211   12


Q ss_pred             HHhhhhhhhccc-cCceEEEEEcccc-chhhccChhhHHHHhhhhhc
Q 007143          259 RHFVKGLLLDDI-MGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       259 ~dfv~~~l~~~i-~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~  303 (616)
                      .+++.++++..+ .+..+.++...+. +|.+|++|++|.+|++++++
T Consensus       201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence            355666666554 4557778888744 89999999999999999875

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.97  E-value=6.1e-30  Score=260.96  Aligned_cols=235  Identities=20%  Similarity=0.329  Sum_probs=184.1

Q ss_pred             EEEEeCC--CCCCCCCCCCCCCcccceeCCeehHHHHHHHHHH-CCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           31 AILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        31 aVILA~g--~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~-~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      |||||+|  +|+||+|+|..+||||+||+|+|||+|+|++|.. +|+++|+|++++..+++++|+.+...  ..++.+.+
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~--~~~~~i~~   78 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ--EFNVPIRY   78 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc--ccCceEEE
Confidence            6899999  8999999999999999999999999999999999 69999999999999999999976321  12466777


Q ss_pred             EeCCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      +.+.+..|+++++..+  +.++.    ++|||++||++++.++.++++.|+++     ++.+|+++++....   ...++
T Consensus        79 ~~~~~~~Gt~~al~~a--~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~-----~~~~tl~~~~~~~~---~~~~y  148 (257)
T cd06428          79 LQEYKPLGTAGGLYHF--RDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKH-----GASGTILGTEASRE---QASNY  148 (257)
T ss_pred             ecCCccCCcHHHHHHH--HHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHc-----CCCEEEEEEEcccc---ccccc
Confidence            7666778999998864  34442    45999999999999999999999875     36788888765322   34567


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh-----h---
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY-----Q---  255 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~-----q---  255 (616)
                      |    ++.+|..+++|+.+.|||...                   .++++.+|+|+++++++..+.+...-     +   
T Consensus       149 g----~v~~d~~~g~v~~~~Ekp~~~-------------------~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~  205 (257)
T cd06428         149 G----CIVEDPSTGEVLHYVEKPETF-------------------VSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGD  205 (257)
T ss_pred             c----EEEEeCCCCeEEEEEeCCCCc-------------------ccceEEEEEEEECHHHHHHHhhhcccccccccccc
Confidence            7    777875578999999997521                   13578899999999999887642110     0   


Q ss_pred             -------hHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          256 -------HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       256 -------~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                             ....++..++++..+...++++|.++ +||.+|+++++|.++++.+
T Consensus       206 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~-g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTD-DFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             ccccccccceeeehhhhhhHHhccCCEEEecCC-CeeecCCCHHHHHhHhhcC
Confidence                   00112334555555555689999997 8999999999999998863

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PRK10122 GalU regulator GalF; Provisional

Probab=99.97  E-value=9e-30  Score=264.28  Aligned_cols=241  Identities=15%  Similarity=0.210  Sum_probs=187.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC--------
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------   99 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------   99 (616)
                      .|+|||+|||+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.. .|..        
T Consensus         3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~l~~~~~~~~   81 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQRV   81 (297)
T ss_pred             ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhc-chhHHHHHhhcc
Confidence            5899999999999999999999999999999999999999999999999999999999999999964 3411        


Q ss_pred             ------------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhhc
Q 007143          100 ------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK  158 (616)
Q Consensus       100 ------------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~~  158 (616)
                                  ..++++.++.+++..|+|+|+..  ++.++. ++|+|+.||++++        +++.++++.|++.. 
T Consensus        82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~--a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~-  158 (297)
T PRK10122         82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILC--ARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETG-  158 (297)
T ss_pred             hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHH--HHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhC-
Confidence                        12567888888889999999985  455665 4599999999875        68999999997642 


Q ss_pred             cCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehHhhhcCCceEEEecc
Q 007143          159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK  232 (616)
Q Consensus       159 ~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl  232 (616)
                          +.++++.... +    ...+||    ++.+|.   ..+   +|..+.|||..+..                ..+++
T Consensus       159 ----~~~~~~~~~~-~----~~~~yG----vv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------~~s~~  209 (297)
T PRK10122        159 ----RSQVLAKRMP-G----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL  209 (297)
T ss_pred             ----CcEEEEEECC-C----CCCCce----EEEecCcccCCCCeeeEEEEEECCCCccc----------------CCccE
Confidence                3344444332 2    345787    777762   234   78899999852210                12467


Q ss_pred             ccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh-hc
Q 007143          233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI-IQ  303 (616)
Q Consensus       233 ~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di-l~  303 (616)
                      +.+|+|||+|+++..+.+.... .....++.++++..+.+.++++|.++ ++|.+|+++++|..++.++ +.
T Consensus       210 ~~~GiYi~~~~i~~~l~~~~~~-~~~e~~ltd~i~~l~~~~~v~~~~~~-G~w~DiG~p~~~~~a~~~~~~~  279 (297)
T PRK10122        210 MAVGRYVLSADIWPELERTEPG-AWGRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKYGLR  279 (297)
T ss_pred             EEEEEEEECHHHHHHHHhCCCC-CCCeeeHHHHHHHHHhCCCEEEEEeC-CEEEcCCCHHHHHHHHHHHHhc
Confidence            8999999999999988763211 11123444555555566789999997 8999999999999999987 44

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.96  E-value=3.5e-28  Score=245.43  Aligned_cols=232  Identities=18%  Similarity=0.187  Sum_probs=174.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhc-CCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~i~  106 (616)
                      |+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++ +.+++.+|+... .|    ++++.
T Consensus         1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~----~~~i~   76 (240)
T cd02538           1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDL----GIRIT   76 (240)
T ss_pred             CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccccc----CceEE
Confidence            6899999999999999999999999999999999999999999999999998875 468899999763 34    46677


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.+.+..|++++++.  ++.++.+ +|+|++||+ +.+.++.++++.|++.     ++.+|+++.+..     ...+++
T Consensus        77 ~~~~~~~~G~~~al~~--a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g  144 (240)
T cd02538          77 YAVQPKPGGLAQAFII--GEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQ-----KEGATVFGYEVN-----DPERYG  144 (240)
T ss_pred             EeeCCCCCCHHHHHHH--HHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhc-----CCCcEEEEEECC-----chhcCc
Confidence            7766677899999985  4455654 599999997 5577899999999764     356677776654     334677


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                          ++.+|. .++|..+.+||....                   .+++++|+|+++|++++++.+...... ....+.+
T Consensus       145 ----~v~~d~-~g~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~~~~~-~~~~l~d  199 (240)
T cd02538         145 ----VVEFDE-NGRVLSIEEKPKKPK-------------------SNYAVTGLYFYDNDVFEIAKQLKPSAR-GELEITD  199 (240)
T ss_pred             ----eEEecC-CCcEEEEEECCCCCC-------------------CCeEEEEEEEECHHHHHHHHhcCCCCC-CeEEhHH
Confidence                788874 579999999875321                   346789999999999998853211000 0112223


Q ss_pred             hhhccccCceEEEEEcc-ccchhhccChhhHHHHhhhh
Q 007143          265 LLLDDIMGYKIFTHEIH-SSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~-~~y~~~V~s~~sY~~a~~di  301 (616)
                      +++..+...++.++.++ .+||.+|+++++|..+++.+
T Consensus       200 ~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~  237 (240)
T cd02538         200 VNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV  237 (240)
T ss_pred             HHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence            33333333455555543 37999999999999998754

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.96  E-value=3.6e-28  Score=251.23  Aligned_cols=229  Identities=17%  Similarity=0.232  Sum_probs=177.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhc-CCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~i  105 (616)
                      .|+|||||+|+||||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++.+ ..+++++|+.+. .|    ++++
T Consensus         3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~----g~~i   78 (292)
T PRK15480          3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GLNL   78 (292)
T ss_pred             ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCcccc----Ccee
Confidence            48999999999999999999999999999999999999999999999999987764 478899999763 34    5778


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      .++.+++..|+++|+..  ++.++.+ +|+|+.||. +++.+|.++++.|++++     +.+|+++.+..     ++.+|
T Consensus        79 ~y~~q~~~~Gta~Al~~--a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~-----~~~tv~~~~v~-----~p~~y  146 (292)
T PRK15480         79 QYKVQPSPDGLAQAFII--GEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKE-----SGATVFAYHVN-----DPERY  146 (292)
T ss_pred             EEEECCCCCCHHHHHHH--HHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCC-----CCeEEEEEEcC-----CcccC
Confidence            88888888999999885  4556654 599999997 45889999999997642     45677665543     45688


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh----hhHHH
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY----QHLRR  259 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~----q~lr~  259 (616)
                      |    ++.+|. +++|..++|||..+                   .+++..+|+|+++|++++.+..-...    -.+ .
T Consensus       147 G----vv~~d~-~g~v~~i~EKP~~p-------------------~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-t  201 (292)
T PRK15480        147 G----VVEFDQ-NGTAISLEEKPLQP-------------------KSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-T  201 (292)
T ss_pred             c----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-H
Confidence            8    888884 67999999998532                   24678899999999999987532110    011 2


Q ss_pred             HhhhhhhhccccCceEE-EEEcccc-chhhccChhhHHHHhhhhh
Q 007143          260 HFVKGLLLDDIMGYKIF-THEIHSS-YAARIDNYRSYDIVSKDII  302 (616)
Q Consensus       260 dfv~~~l~~~i~g~~I~-~~~~~~~-y~~~V~s~~sY~~a~~dil  302 (616)
                      |.++.++    ..+++. .+... + +|.+++++++|.++++.+-
T Consensus       202 d~~~~~l----~~g~~~~~~~~~-g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        202 DINRIYM----EQGRLSVAMMGR-GYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             HHHHHHH----hcCCeEEEEecC-CcEEECCCCHHHHHHHHHHHH
Confidence            3333333    333443 34444 6 5999999999999987764

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.96  E-value=5.2e-28  Score=246.29  Aligned_cols=227  Identities=15%  Similarity=0.235  Sum_probs=175.9

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-----CCC-----
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFS-----   99 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-----~~~-----   99 (616)
                      +|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+.+..     |..     
T Consensus         1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR02623         1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN   80 (254)
T ss_pred             CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence            5899999999999999999999999999999999999999999999999999999999999997521     100     


Q ss_pred             --------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143          100 --------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK  170 (616)
Q Consensus       100 --------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~  170 (616)
                              .+...+.+..+.+..|+|++++.  ++.++. ++||+++||++++.++.++++.|++.     ++.+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~--~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~-----~~d~tl~~~  153 (254)
T TIGR02623        81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--VREYLDDEAFCFTYGDGVADIDIKALIAFHRKH-----GKKATVTAV  153 (254)
T ss_pred             ccccccccCCccceeeeecCCcCCcHHHHHH--HHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHc-----CCCEEEEEe
Confidence                    00112334444456899999985  445666 56999999999999999999999875     366676654


Q ss_pred             cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc
Q 007143          171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD  250 (616)
Q Consensus       171 ~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d  250 (616)
                      +       ...++|    ++.+|  .++|..+.|+|...                    ++++++|||+++|++|+++.+
T Consensus       154 ~-------~~~~yG----~v~~d--~~~V~~~~Ekp~~~--------------------~~~i~~Giyi~~~~il~~l~~  200 (254)
T TIGR02623       154 Q-------PPGRFG----ALDLE--GEQVTSFQEKPLGD--------------------GGWINGGFFVLNPSVLDLIDG  200 (254)
T ss_pred             c-------CCCccc----EEEEC--CCeEEEEEeCCCCC--------------------CCeEEEEEEEEcHHHHhhccc
Confidence            3       234677    67777  35899999987421                    246789999999999998865


Q ss_pred             CCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       251 nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ...  ++..|+++.++    ...++++|.++ +||.+|+++++|.++++.+-+
T Consensus       201 ~~~--~~~~d~i~~l~----~~~~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~  246 (254)
T TIGR02623       201 DAT--VWEQEPLETLA----QRGELSAYEHS-GFWQPMDTLRDKNYLEELWES  246 (254)
T ss_pred             cCc--hhhhhHHHHHH----hCCCEEEEeCC-CEEecCCchHHHHHHHHHHHc
Confidence            321  22345555544    34579999997 899999999999998877654

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.96  E-value=9.8e-28  Score=239.00  Aligned_cols=219  Identities=20%  Similarity=0.283  Sum_probs=172.5

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE  109 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~  109 (616)
                      +|||||+|.|+||+|+|..+||||+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.+..|    ++.+.++.
T Consensus         1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~----~~~i~~~~   76 (221)
T cd06422           1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRF----GLRITISD   76 (221)
T ss_pred             CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccC----CceEEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999976334    46677766


Q ss_pred             CC-CccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCc
Q 007143          110 SH-NIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE  187 (616)
Q Consensus       110 ~~-~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~  187 (616)
                      +. +..|++++++..  +..+. ++||+++||++++.++.++++.|+++.   .++.+|+...+..     +..+++   
T Consensus        77 ~~~~~~g~~~~l~~~--~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~g---  143 (221)
T cd06422          77 EPDELLETGGGIKKA--LPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRM---DALLLLLPLVRNP-----GHNGVG---  143 (221)
T ss_pred             CCCcccccHHHHHHH--HHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhcc---CCCceEEEEEEcC-----CCCCcc---
Confidence            55 567899998854  44555 569999999999999999999998521   3567777665533     234555   


Q ss_pred             eEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhh
Q 007143          188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLL  267 (616)
Q Consensus       188 ~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~  267 (616)
                       ++.+|. .++|..+.++|.                      ..++.+|||+++|+++..+.+.. + .+ .|+++.+  
T Consensus       144 -~v~~d~-~~~v~~~~~~~~----------------------~~~~~~Giyi~~~~~l~~l~~~~-~-~~-~d~~~~l--  194 (221)
T cd06422         144 -DFSLDA-DGRLRRGGGGAV----------------------APFTFTGIQILSPELFAGIPPGK-F-SL-NPLWDRA--  194 (221)
T ss_pred             -eEEECC-CCcEeecccCCC----------------------CceEEEEEEEEcHHHHhhCCcCc-c-cH-HHHHHHH--
Confidence             677874 578888877753                      14678999999999999776542 1 11 2444444  


Q ss_pred             ccccCceEEEEEccccchhhccChhhHHHH
Q 007143          268 DDIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       268 ~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                        +...++++|..+ +||.+|+++++|.++
T Consensus       195 --~~~~~~~~~~~~-g~w~di~t~~~~~~a  221 (221)
T cd06422         195 --IAAGRLFGLVYD-GLWFDVGTPERLLAA  221 (221)
T ss_pred             --HHcCCeEEEecC-CEEEcCCCHHHHhhC
Confidence              344578888875 899999999999764

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.96  E-value=1e-27  Score=245.96  Aligned_cols=238  Identities=15%  Similarity=0.226  Sum_probs=179.7

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC---------
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS---------   99 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~---------   99 (616)
                      |+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|.++|+++|+|++++..+++.+|+... |..         
T Consensus         1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~   79 (267)
T cd02541           1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRS-YELEETLEKKGK   79 (267)
T ss_pred             CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCc-HHHHHHHHhccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999652 210         


Q ss_pred             ----------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecch---hHHHHHHHHHHhhccCCCceE
Q 007143          100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM  165 (616)
Q Consensus       100 ----------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~h~~~~~~d~~a~m  165 (616)
                                ..++.+.++.++..+|++++++..  +.++. ++|+|++||++...   ++.++++.|++..     +. 
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~--~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~-  151 (267)
T cd02541          80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCA--KPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----AS-  151 (267)
T ss_pred             HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHH--HHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhC-----CC-
Confidence                      014567777777789999999854  44565 45999999997654   5999999998642     22 


Q ss_pred             EEEEecCCCCCCCcccccCCCceEEEEeCC---CCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCH
Q 007143          166 TMIIKKSKPSPITHQSRLGTDELFMAIDPN---TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP  242 (616)
Q Consensus       166 T~v~~~~~~~~~~~~~r~~~~~~vv~id~~---~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp  242 (616)
                      ++++....+.   ...+++    ++.+|..   .++|..+.|||.....                 .+.++.+|+|++++
T Consensus       152 ~~~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~  207 (267)
T cd02541         152 VIAVEEVPPE---DVSKYG----IVKGEKIDGDVFKVKGLVEKPKPEEA-----------------PSNLAIVGRYVLTP  207 (267)
T ss_pred             EEEEEEcChh---cCccce----EEEeecCCCCceEEeEEEECCCCCCC-----------------CCceEEEEEEEcCH
Confidence            3444443322   345677    7888852   3589999999752110                 13567799999999


Q ss_pred             hHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       243 ~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      +++..+.+... ..-...++..+++..+..+++++|.++ +||.+|+++++|.++++++
T Consensus       208 ~~~~~l~~~~~-~~~~e~~~~d~i~~l~~~~~v~~~~~~-g~w~digt~~~y~~a~~~~  264 (267)
T cd02541         208 DIFDILENTKP-GKGGEIQLTDAIAKLLEEEPVYAYVFE-GKRYDCGNKLGYLKATVEF  264 (267)
T ss_pred             HHHHHHHhCCC-CCCCcEEHHHHHHHHHhcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence            99988754110 000122344455554445589999997 8999999999999999986

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.96  E-value=1.7e-27  Score=247.69  Aligned_cols=240  Identities=15%  Similarity=0.168  Sum_probs=183.4

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCC------
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWF------   98 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~------   98 (616)
                      ...|+|||+|+|.|+||+|+|..+||+|+|++|+|+|+|+|++|..+|+++|+|++++..+++.+|+... .|.      
T Consensus         6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~   85 (302)
T PRK13389          6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR   85 (302)
T ss_pred             ccceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence            3468999999999999999999999999999999999999999999999999999999999999999752 121      


Q ss_pred             ------------CCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhh
Q 007143           99 ------------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERK  157 (616)
Q Consensus        99 ------------~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~  157 (616)
                                  ..++..+.++.+.+..|+|+|++..  +.++. ++|+|++||++++        .+|.++++.|++..
T Consensus        86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a--~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~  163 (302)
T PRK13389         86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA--HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG  163 (302)
T ss_pred             hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHH--HHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcC
Confidence                        0123456677777789999999864  34454 4599999999764        79999999997642


Q ss_pred             ccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC------CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEec
Q 007143          158 KKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP------NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHND  231 (616)
Q Consensus       158 ~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~------~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~d  231 (616)
                           +. |+++.+..     ...+||    ++.+|.      .+++|..+.|||.....                 .++
T Consensus       164 -----~~-tl~~~~~~-----~~~~yG----vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-----------------~s~  211 (302)
T PRK13389        164 -----HS-QIMVEPVA-----DVTAYG----VVDCKGVELAPGESVPMVGVVEKPKADVA-----------------PSN  211 (302)
T ss_pred             -----CC-EEEEEEcc-----cCCcce----EEEecCcccccCCcceEEEEEECCCCCCC-----------------Ccc
Confidence                 33 45555542     345777    777753      24589999999862111                 135


Q ss_pred             cccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          232 KQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       232 l~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      ++.+|+|+++|++++++.....-. -...++.++++..+.+.++++|.++ +||.+|+++++|..++.++
T Consensus       212 ~~~~GiYi~~~~il~~l~~~~~~~-~~e~~l~d~i~~l~~~~~v~~~~~~-G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        212 LAIVGRYVLSADIWPLLAKTPPGA-GDEIQLTDAIDMLIEKETVEAYHMK-GKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             EEEEEEEEECHHHHHHHHhCCCCC-CCeeeHHHHHHHHHHcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence            688999999999999886432110 0123445555554455689999987 8999999999999998885

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.96  E-value=1.3e-27  Score=246.66  Aligned_cols=231  Identities=18%  Similarity=0.232  Sum_probs=176.5

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhc-CCCCCCCcEEEE
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTVKT  107 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~-~~~~~~~~~i~~  107 (616)
                      +|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++. ++.+.+++++.+. .|    ++++.+
T Consensus         1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~----g~~i~~   76 (286)
T TIGR01207         1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GVNLSY   76 (286)
T ss_pred             CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcccccc----CceEEE
Confidence            58999999999999999999999999999999999999999999999998886 5578899999763 34    578888


Q ss_pred             EeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      +.+++..|+++|+..  ++.++.+ +|+|+.||. +++.+|.+++++|.++     ++.+|++..+..     .+.+|| 
T Consensus        77 ~~q~~~~Gta~al~~--a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~-----~~~~ti~~~~v~-----~p~~yG-  143 (286)
T TIGR01207        77 AVQPSPDGLAQAFII--GEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR-----ESGATVFAYQVS-----DPERYG-  143 (286)
T ss_pred             EEccCCCCHHHHHHH--HHHHhCCCCEEEEECCEeccccCHHHHHHHHHhc-----CCCcEEEEEEcc-----CHHHCc-
Confidence            888888999999985  4456664 599999997 5688999999999764     355677766654     345888 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL  265 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~  265 (616)
                         ++.+|. .++|+.+.|||..+                   .+++..+|+|++++++++++..-..-.. ..-.+.++
T Consensus       144 ---vv~~d~-~g~V~~i~EKp~~~-------------------~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~eitdv  199 (286)
T TIGR01207       144 ---VVEFDS-NGRAISIEEKPAQP-------------------KSNYAVTGLYFYDNRVVEIARQLKPSAR-GELEITDL  199 (286)
T ss_pred             ---eEEECC-CCeEEEEEECCCCC-------------------CCCEEEEEEEEEchHHHHHHhhcCCCCC-CcEeHHHH
Confidence               888884 68999999998522                   1456789999999999988753211000 01122344


Q ss_pred             hhccccCceEEEEEccccc-hhhccChhhHHHHhhhh
Q 007143          266 LLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDI  301 (616)
Q Consensus       266 l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~di  301 (616)
                      ++..+..+++.++.+..++ |.+++++++|.+++..+
T Consensus       200 ~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~  236 (286)
T TIGR01207       200 NRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFI  236 (286)
T ss_pred             HHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence            4433333445555553465 99999999999998765

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.95  E-value=2.2e-27  Score=242.39  Aligned_cols=234  Identities=15%  Similarity=0.213  Sum_probs=174.0

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC---------
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS---------   99 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~---------   99 (616)
                      |+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|+... |..         
T Consensus         1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~   79 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTS-YELEHQLEKRGK   79 (260)
T ss_pred             CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhccc-HHHHHHHHhhhh
Confidence            6899999999999999999999999999999999999999999999999999999999999999742 210         


Q ss_pred             ----------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecch---hHHHHHHHHHHhhccCCCceE
Q 007143          100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM  165 (616)
Q Consensus       100 ----------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~h~~~~~~d~~a~m  165 (616)
                                .+++.+.++.+....|++++++..  +.++. ++|||++||++...   ++.++++.|++..     +.+
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~--~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~i  152 (260)
T TIGR01099        80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCA--EPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYG-----CSI  152 (260)
T ss_pred             HHHHHHhhhccccceEEEEecCCCCCHHHHHHHH--HHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhC-----CCE
Confidence                      012456666666778999999854  44554 45999999996643   7999999998753     333


Q ss_pred             EEEEecCCCCCCCcccccCCCceEEEEeC---CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCH
Q 007143          166 TMIIKKSKPSPITHQSRLGTDELFMAIDP---NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP  242 (616)
Q Consensus       166 T~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp  242 (616)
                       +++......   ...++|    ++.+|.   ++++|..+.|||.+...                 .++++.+|+|+++|
T Consensus       153 -i~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~  207 (260)
T TIGR01099       153 -IAVEEVPKE---EVSKYG----VIDGEGVEEGLYEIKDMVEKPKPEEA-----------------PSNLAIVGRYVLTP  207 (260)
T ss_pred             -EEEEECChh---hcccCc----eEEeccccCCceeEEEEEECCCCCCC-----------------CCceEEEEEEECCH
Confidence             333333222   345777    777762   34799999999852211                 13567899999999


Q ss_pred             hHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHH
Q 007143          243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       243 ~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                      +++..+.+...- .-...++.++++..+...++++|.++ +||.+|+++++|+++
T Consensus       208 ~~~~~l~~~~~~-~~~~~~l~d~i~~l~~~~~v~~~~~~-g~w~digs~~~y~~a  260 (260)
T TIGR01099       208 DIFDLLEETPPG-AGGEIQLTDALRKLLEKETVYAYKFK-GKRYDCGSKLGYLKA  260 (260)
T ss_pred             HHHHHHHhCCCC-CCCceeHHHHHHHHHhcCCEEEEEcc-eEEEeCCCHHHHhhC
Confidence            999987542110 00122334445544455689999997 899999999999864

Built to distinquish between the highly similar genes galU and galF

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.95  E-value=5.4e-27  Score=235.88  Aligned_cols=229  Identities=14%  Similarity=0.283  Sum_probs=181.2

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~i~~  107 (616)
                      |+|||||+|.|+||+|+|...||+|+||+|+|||+|+|++|.++|+++|+|++++..+++++|+.+. +|    ++++.+
T Consensus         1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~----~~~i~~   76 (236)
T cd04189           1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF----GVRITY   76 (236)
T ss_pred             CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc----CCeEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999763 24    466777


Q ss_pred             EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD  186 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~  186 (616)
                      +.+...+|++++++..  +..+. ++||+++||++++.++.++++.|++.+     +.+|+++.+..     +..+++  
T Consensus        77 ~~~~~~~g~~~sl~~a--~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~g--  142 (236)
T cd04189          77 ILQEEPLGLAHAVLAA--RDFLGDEPFVVYLGDNLIQEGISPLVRDFLEED-----ADASILLAEVE-----DPRRFG--  142 (236)
T ss_pred             EECCCCCChHHHHHHH--HHhcCCCCEEEEECCeecCcCHHHHHHHHHhcC-----CceEEEEEECC-----Ccccce--
Confidence            7777778999999964  44565 669999999999999999999998653     56677776643     334565  


Q ss_pred             ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh----hhHHHHhh
Q 007143          187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY----QHLRRHFV  262 (616)
Q Consensus       187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~----q~lr~dfv  262 (616)
                        ++.+|  .++|..+.++|...                   .+++..+|||+++|+++..+......    -.+ .|++
T Consensus       143 --~~~~d--~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~  198 (236)
T cd04189         143 --VAVVD--DGRIVRLVEKPKEP-------------------PSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAI  198 (236)
T ss_pred             --EEEEc--CCeEEEEEECCCCC-------------------CCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHH
Confidence              66676  35899998886421                   13457899999999999877431110    011 2444


Q ss_pred             hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       263 ~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      +.++.   .|.+|+++.++ +||.+|+++++|..+++.+++
T Consensus       199 ~~~i~---~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         199 QWLID---RGRRVGYSIVT-GWWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             HHHHH---cCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHHh
Confidence            44432   46679999987 899999999999999998875

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.95  E-value=9.7e-27  Score=236.85  Aligned_cols=225  Identities=15%  Similarity=0.211  Sum_probs=172.4

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-----CCCC-----
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFSQ-----  100 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-----~~~~-----  100 (616)
                      |||||||+|+||+|+|..+||||+||+|+|||+|+++.+..+|+++|+|++++..+++++|+.+..     |...     
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR   80 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence            699999999999999999999999999999999999999999999999999999999999997632     1100     


Q ss_pred             --------CCcEEEEEeCCCccCHHHHHHHHHhccccc--CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143          101 --------PNFTVKTIESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK  170 (616)
Q Consensus       101 --------~~~~i~~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~  170 (616)
                              .++.++++......++|++++.  ++..+.  ++|||++||++++.++..+++.|+..     ++.+|+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~--a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~-----~~~~tl~~~  153 (253)
T cd02524          81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKR--VRRYLGDDETFMLTYGDGVSDVNINALIEFHRSH-----GKLATVTAV  153 (253)
T ss_pred             eeeecccccccceeecccCcccccHHHHHH--HHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHc-----CCCEEEEEe
Confidence                    0112222222334678988885  445565  45999999999999999999999764     467787765


Q ss_pred             cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc
Q 007143          171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD  250 (616)
Q Consensus       171 ~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d  250 (616)
                      ..       ..+++    ++.+|. +++|..+.++|...                    +.++.+|||+++|+++..+..
T Consensus       154 ~~-------~~~~g----~v~~d~-~g~V~~~~ekp~~~--------------------~~~i~~Giyi~~~~l~~~l~~  201 (253)
T cd02524         154 HP-------PGRFG----ELDLDD-DGQVTSFTEKPQGD--------------------GGWINGGFFVLEPEVFDYIDG  201 (253)
T ss_pred             cC-------CCccc----EEEECC-CCCEEEEEECCCCC--------------------CceEEEEEEEECHHHHHhhcc
Confidence            31       23556    677875 58999999987521                    135678999999999988765


Q ss_pred             CCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       251 nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      .      +.++..++++..+...++++|.++ +||.+|+++.+|..+...+
T Consensus       202 ~------~~~~~~d~l~~li~~~~v~~~~~~-g~w~~I~t~~~~~~~~~~~  245 (253)
T cd02524         202 D------DTVFEREPLERLAKDGELMAYKHT-GFWQCMDTLRDKQTLEELW  245 (253)
T ss_pred             c------cchhhHHHHHHHHhcCCEEEEecC-CEEEeCcCHHHHHHHHHHH
Confidence            3      123333444444445589999987 7999999999999998554

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.95  E-value=2.2e-26  Score=227.82  Aligned_cols=215  Identities=22%  Similarity=0.424  Sum_probs=173.9

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~i~~i~  109 (616)
                      |||||+|.|+||+|+|...||+|+|++|+|||+|+++.|..+|+++|+|+++++.+++++|+.+.. |    ++.+.++.
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~----~~~i~~~~   76 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF----GVNIEYVV   76 (217)
T ss_pred             CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc----CceEEEEe
Confidence            699999999999999999999999999999999999999999999999999998899999987632 3    35677777


Q ss_pred             CCCccCHHHHHHHHHhcccc-cCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143          110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL  188 (616)
Q Consensus       110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~  188 (616)
                      +....|++++++..  +..+ .++|++++||++++.++.++++.|++.     ++.+|+++.+..     +..+++    
T Consensus        77 ~~~~~g~~~al~~~--~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~----  140 (217)
T cd04181          77 QEEPLGTAGAVRNA--EDFLGDDDFLVVNGDVLTDLDLSELLRFHREK-----GADATIAVKEVE-----DPSRYG----  140 (217)
T ss_pred             CCCCCccHHHHHHh--hhhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCCEEEEEEEcC-----CCCcce----
Confidence            76678999999864  3445 456999999999999999999988864     467788877654     234565    


Q ss_pred             EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhc
Q 007143          189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD  268 (616)
Q Consensus       189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~  268 (616)
                      ++.+|. .++|..+.++|....                   .++..+|+|++++++++++.+.+.   -..+++..+++.
T Consensus       141 ~v~~d~-~~~v~~~~ek~~~~~-------------------~~~~~~Giy~~~~~~~~~l~~~~~---~~~~~~~~~~~~  197 (217)
T cd04181         141 VVELDD-DGRVTRFVEKPTLPE-------------------SNLANAGIYIFEPEILDYIPEILP---RGEDELTDAIPL  197 (217)
T ss_pred             EEEEcC-CCcEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhhhhcCC---cccccHHHHHHH
Confidence            777875 589999999875321                   356789999999999998877643   123556666666


Q ss_pred             cccCceEEEEEccccchhhcc
Q 007143          269 DIMGYKIFTHEIHSSYAARID  289 (616)
Q Consensus       269 ~i~g~~I~~~~~~~~y~~~V~  289 (616)
                      .+...++++|.++ +||.+|+
T Consensus       198 l~~~~~v~~~~~~-g~w~dig  217 (217)
T cd04181         198 LIEEGKVYGYPVD-GYWLDIG  217 (217)
T ss_pred             HHhcCCEEEEEcC-CEEecCC
Confidence            5555789999998 8999875

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.95  E-value=4.2e-26  Score=226.83  Aligned_cols=219  Identities=21%  Similarity=0.367  Sum_probs=174.6

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~i~~i~  109 (616)
                      |||||+|+|+||+|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.+. .|    ++++.++.
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~----~~~i~~~~   76 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKF----GVNISYVR   76 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcccc----CccEEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999998763 24    35677776


Q ss_pred             CCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceE
Q 007143          110 SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELF  189 (616)
Q Consensus       110 ~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~v  189 (616)
                      +....|++++++.+.  ..+.++|+|++||++.+.++..+++.|++.     ++.+|+++.+..+     ...++    +
T Consensus        77 ~~~~~g~~~~l~~~~--~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~-----~~~~g----~  140 (220)
T cd06426          77 EDKPLGTAGALSLLP--EKPTDPFLVMNGDILTNLNYEHLLDFHKEN-----NADATVCVREYEV-----QVPYG----V  140 (220)
T ss_pred             CCCCCcchHHHHHHH--hhCCCCEEEEcCCEeeccCHHHHHHHHHhc-----CCCEEEEEEEcCC-----CCcce----E
Confidence            666789999998643  334567999999999999999999999864     4667777765432     12355    6


Q ss_pred             EEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhcc
Q 007143          190 MAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDD  269 (616)
Q Consensus       190 v~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~  269 (616)
                      +.+|.  ++|..+.++|..                     +.++.+|+|+++|.++..+.++-.| .+ .++++.++.  
T Consensus       141 ~~~d~--~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~i~~~~~~-~l-~~~~~~~i~--  193 (220)
T cd06426         141 VETEG--GRITSIEEKPTH---------------------SFLVNAGIYVLEPEVLDLIPKNEFF-DM-PDLIEKLIK--  193 (220)
T ss_pred             EEECC--CEEEEEEECCCC---------------------CCeEEEEEEEEcHHHHhhcCCCCCc-CH-HHHHHHHHH--
Confidence            66763  899999988642                     2356799999999999988765322 22 255555543  


Q ss_pred             ccCceEEEEEccccchhhccChhhHHHHh
Q 007143          270 IMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       270 i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                       .+.+|++|.++ ++|.+|+++.+|.+++
T Consensus       194 -~~~~i~~~~~~-~~w~~igt~~dl~~a~  220 (220)
T cd06426         194 -EGKKVGVFPIH-EYWLDIGRPEDYEKAN  220 (220)
T ss_pred             -CCCcEEEEEeC-CeEEeCCCHHHHHhhC
Confidence             45679999998 8999999999998874

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.94  E-value=8.6e-26  Score=224.38  Aligned_cols=220  Identities=18%  Similarity=0.342  Sum_probs=172.4

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~i~~i~  109 (616)
                      |||||+|.|+||+|+|...||+|+|++|+|||+|++++|.++|+++|+|+++++.+.+++|+.... |    ++.+.+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~----~~~~~~~~   76 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG----GIRIYYVI   76 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc----CceEEEEE
Confidence            699999999999999999999999999999999999999999999999999998899999997533 3    34566666


Q ss_pred             CCCccCHHHHHHHHHhcccc-cCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143          110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL  188 (616)
Q Consensus       110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~  188 (616)
                      .....|+++++...  +..+ .++|++++||++.+.++.++++.|++.     ++.+++++.+..     ...+++    
T Consensus        77 ~~~~~G~~~~l~~a--~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-----~~~~~~----  140 (223)
T cd06915          77 EPEPLGTGGAIKNA--LPKLPEDQFLVLNGDTYFDVDLLALLAALRAS-----GADATMALRRVP-----DASRYG----  140 (223)
T ss_pred             CCCCCcchHHHHHH--HhhcCCCCEEEEECCcccCCCHHHHHHHHHhC-----CCcEEEEEEECC-----CCCcce----
Confidence            66678999888854  3445 456999999999999999999999763     356666666643     223555    


Q ss_pred             EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhc
Q 007143          189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD  268 (616)
Q Consensus       189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~  268 (616)
                      ++.+|. +++|+.+.++|...                   ++.+..+|||+++|+++..+.+. .+. ...++++.++  
T Consensus       141 ~v~~d~-~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~l~~~~~~-~~~-~~~~~~~~l~--  196 (223)
T cd06915         141 NVTVDG-DGRVIAFVEKGPGA-------------------APGLINGGVYLLRKEILAEIPAD-AFS-LEADVLPALV--  196 (223)
T ss_pred             eEEECC-CCeEEEEEeCCCCC-------------------CCCcEEEEEEEECHHHHhhCCcc-CCC-hHHHHHHHHH--
Confidence            667775 58999999876421                   24677899999999999887643 121 1235554443  


Q ss_pred             cccCceEEEEEccccchhhccChhhHHHH
Q 007143          269 DIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       269 ~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                        ...++++|+++ ++|.+|+++.+|..+
T Consensus       197 --~~~~v~~~~~~-~~~~dI~t~~dl~~a  222 (223)
T cd06915         197 --KRGRLYGFEVD-GYFIDIGIPEDYARA  222 (223)
T ss_pred             --hcCcEEEEecC-CeEEecCCHHHHHhh
Confidence              33489999998 899999999999876

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=1.4e-24  Score=213.63  Aligned_cols=243  Identities=15%  Similarity=0.221  Sum_probs=191.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC----------
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE----------   96 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~----------   96 (616)
                      +..+|||.|||+||||.|.|...||-||||.++|+|+|+++.+..+|+++|++|++.+...|++|++.+.          
T Consensus         3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~   82 (291)
T COG1210           3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG   82 (291)
T ss_pred             cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence            4579999999999999999999999999999999999999999999999999999999889999986631          


Q ss_pred             C--------CCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCceecc---hhHHHHHHHHHHhhccCCCce
Q 007143           97 W--------FSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDTVSN---MLLTQALQEHKERKKKDNNAV  164 (616)
Q Consensus        97 ~--------~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~i~~---~~l~~~l~~h~~~~~~d~~a~  164 (616)
                      .        ......++.++.+.+..|+|+|+..  ++.+++++ |.|+.+|.+..   ..+..+++.+.+.+    .. 
T Consensus        83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~--A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g----~s-  155 (291)
T COG1210          83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLC--AKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETG----GS-  155 (291)
T ss_pred             HHHHHHHHHhcccCceEEEEecCCCCcchhHHHh--hhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhC----Cc-
Confidence            0        0013568999999999999999995  78889876 99999999665   36888888887753    22 


Q ss_pred             EEEEEecCCCCCCCcccccCCCceEEE----EeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143          165 MTMIIKKSKPSPITHQSRLGTDELFMA----IDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC  240 (616)
Q Consensus       165 mT~v~~~~~~~~~~~~~r~~~~~~vv~----id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc  240 (616)
                       .+.+.++.+.   ...+||    ++.    ++....+|..+.|||.+.+.                 .++|.-.|-||+
T Consensus       156 -vi~v~ev~~e---~v~kYG----vi~~g~~~~~~~~~v~~~VEKP~~~~A-----------------PSnlai~GRYil  210 (291)
T COG1210         156 -VIGVEEVPPE---DVSKYG----VIDPGEPVEKGVYKVKGMVEKPKPEEA-----------------PSNLAIVGRYVL  210 (291)
T ss_pred             -EEEEEECCHH---HCcccc----eEecCccccCCeEEEEEEEECCCCCCC-----------------Ccceeeeeeeec
Confidence             3455666554   667888    665    44434689999999974321                 467888899999


Q ss_pred             CHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       241 sp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      +|++|+++...-. -...+--+.+.+...+....+++|.+. +-.+|+++...|..++.++..
T Consensus       211 ~p~IFd~L~~~~~-G~ggEiQLTDai~~L~~~~~v~a~~~~-GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         211 TPEIFDILEETKP-GAGGEIQLTDAIKKLLKKEPVLAYVFE-GKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             CHHHHHHHhhCCC-CCCCEeeHHHHHHHHHhhCcEEEEEec-ccEEccCCcccHHHHHHHHHh
Confidence            9999999986321 111112344455555566899999997 888899999999999888754

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.90  E-value=1.5e-23  Score=205.89  Aligned_cols=186  Identities=25%  Similarity=0.335  Sum_probs=139.1

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCC---CCcEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ---PNFTV  105 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~---~~~~i  105 (616)
                      |||||+|+|+||+|+|...||+|+||+|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.+. .|...   .++.+
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI   80 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence            69999999999999999999999999998 999999999999999999999999999999999763 34221   12223


Q ss_pred             EEEe----CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          106 KTIE----SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       106 ~~i~----~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                      ....    ++...|+|++++...  ..+.    ++|||++||++++.++.++++.|+++     ++.+|+++.       
T Consensus        81 ~~~~~~~~~~~~~Gta~al~~a~--~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~-----~~~~t~~~~-------  146 (200)
T cd02508          81 LPPQQRKGGDWYRGTADAIYQNL--DYIERSDPEYVLILSGDHIYNMDYREMLDFHIES-----GADITVVYK-------  146 (200)
T ss_pred             eCcccCCCCCcccCcHHHHHHHH--HHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEh-------
Confidence            2211    245689999998643  4453    35999999999999999999999874     355555332       


Q ss_pred             CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCChhh
Q 007143          178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQH  256 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~q~  256 (616)
                                                                             +++|+|+++++++. ++... ... 
T Consensus       147 -------------------------------------------------------~~~g~yi~~~~~~~~~l~~~-~~~-  169 (200)
T cd02508         147 -------------------------------------------------------ASMGIYIFSKDLLIELLEED-AAD-  169 (200)
T ss_pred             -------------------------------------------------------hcCEEEEEEHHHHHHHHHHH-hcc-
Confidence                                                                   46789999998874 44431 000 


Q ss_pred             HHHHhhhhhhhccccCceEEEEEccccchhhc
Q 007143          257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARI  288 (616)
Q Consensus       257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V  288 (616)
                      -..+++.++++..+...++++|.++ +||.+|
T Consensus       170 ~~~~~~~d~i~~l~~~~~v~~~~~~-g~w~di  200 (200)
T cd02508         170 GSHDFGKDIIPAMLKKLKIYAYEFN-GYWADI  200 (200)
T ss_pred             CcchhHHHHHHHHhccCcEEEEEeC-CeEecC
Confidence            0224444555554445789999987 899875

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.90  E-value=3.7e-23  Score=207.13  Aligned_cols=223  Identities=20%  Similarity=0.289  Sum_probs=156.2

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES  110 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~  110 (616)
                      |||||+|.|+||+|+|..+||+|+|++|+|||+|+|+.|..+|+++|+|++++..+++.+|+...       ..+.++.+
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~~~~~~~   73 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PNIKFVYN   73 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CCeEEEeC
Confidence            69999999999999999999999999999999999999999999999999999999999998652       12445544


Q ss_pred             CC--ccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143          111 HN--IISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL  188 (616)
Q Consensus       111 ~~--~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~  188 (616)
                      +.  ..|+++++...  +.++.++||+++||++++.   ++++.|.++     ++.+|+++.+....   ...++     
T Consensus        74 ~~~~~~g~~~s~~~~--~~~~~~~~lv~~~D~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~-----  135 (229)
T cd02523          74 PDYAETNNIYSLYLA--RDFLDEDFLLLEGDVVFDP---SILERLLSS-----PADNAILVDKKTKE---WEDEY-----  135 (229)
T ss_pred             cchhhhCcHHHHHHH--HHHcCCCEEEEeCCEecCH---HHHHHHHcC-----CCCCeEEEccCccc---ccccc-----
Confidence            43  46788888754  4455667999999998866   466677754     35667777763221   11122     


Q ss_pred             EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCC-h-hh-HHHHhhhhh
Q 007143          189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-Y-QH-LRRHFVKGL  265 (616)
Q Consensus       189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd-~-q~-lr~dfv~~~  265 (616)
                      .+..+ ..+++..+.++|....                  ...+..+|||+++|+++..+.+... + +. ...+++..+
T Consensus       136 ~~~~~-~~~~v~~~~~k~~~~~------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~  196 (229)
T cd02523         136 VKDLD-DAGVLLGIISKAKNLE------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDA  196 (229)
T ss_pred             eeeec-CccceEeecccCCCcc------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHH
Confidence            22222 1267778888764221                  1346788999999999887654211 0 00 122445555


Q ss_pred             hhccccCceEEEEEccccchhhccChhhHHHH
Q 007143          266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       266 l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                      ++..+...++.++.+..+||.+|+++++|..+
T Consensus       197 i~~l~~~~~~~v~~~~~~~w~dI~~~ed~~~a  228 (229)
T cd02523         197 LQRLISEEGVKVKDISDGFWYEIDDLEDLERA  228 (229)
T ss_pred             HHHHHhhcCeeEEEcCCCCEEEeCCHHHHHhh
Confidence            55544323444444444799999999999876

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.87  E-value=2.2e-21  Score=194.45  Aligned_cols=218  Identities=15%  Similarity=0.187  Sum_probs=150.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcH---HHHHHHHHhcCCCCCCCcEEEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS---KQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~---~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      +||||||+|+||+|+|..+||||+|++|+|||+|+|+.|..+|+++++|++++..   +.+..++....    .++.+.+
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~----~~~~i~~   76 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA----PNATVVE   76 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC----CCCEEEE
Confidence            4899999999999999999999999999999999999999999999999886421   23333333211    1345543


Q ss_pred             EeCCCccCHHHHHHHHHhccccc--CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      . +....|+++++...  +..+.  ++||+++||++++.++.+++.+|.++.     ...++++....      ..+++ 
T Consensus        77 ~-~~~~~g~~~~l~~a--~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~------~~~~~-  141 (231)
T cd04183          77 L-DGETLGAACTVLLA--ADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD-----LDGGVLTFFSS------HPRWS-  141 (231)
T ss_pred             e-CCCCCcHHHHHHHH--HhhcCCCCCEEEEecceeeccCHHHHHHHhhccC-----CceEEEEEeCC------CCCeE-
Confidence            3 44578899888854  44553  459999999999999999999886542     33333333221      12455 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHh-HH-hhhhc----CCChhhHHH
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPE-VL-SLFTD----NFDYQHLRR  259 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~-vl-~lf~d----nfd~q~lr~  259 (616)
                         ++.+|. .++|..+.+++..                     +.+..+|+|+++++ ++ .++.+    ... .. ..
T Consensus       142 ---~v~~d~-~~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~-~~-~~  194 (231)
T cd04183         142 ---YVKLDE-NGRVIETAEKEPI---------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDS-VN-GE  194 (231)
T ss_pred             ---EEEECC-CCCEEEeEEcCCC---------------------CCccEeEEEEECcHHHHHHHHHHHHhhccc-cc-Cc
Confidence               677774 6788888776321                     24577899999997 33 33332    110 00 11


Q ss_pred             Hhhhhhhhccc-cCceEEEEEccccchhhccChhhH
Q 007143          260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY  294 (616)
Q Consensus       260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY  294 (616)
                      .++..+++..+ .|.+++++.+++++|.+|+++++|
T Consensus       195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl  230 (231)
T cd04183         195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL  230 (231)
T ss_pred             EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence            22344555444 456899999865899999999876

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.86  E-value=2.2e-21  Score=199.60  Aligned_cols=187  Identities=16%  Similarity=0.203  Sum_probs=138.6

Q ss_pred             eEEEEEeCCCCCCCCCCCC-CCCcccceeCC-eehHHHHHHHHHHC-CCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcE
Q 007143           29 LQAILLADSFTTKFRPITL-ERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT  104 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~-~~PK~Llpi~g-~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~  104 (616)
                      |++||||+|.|+||+|+|. .+||+|+|++| +|||+|+++.|... ++++|+|++++ +.+.+++++..  +    ...
T Consensus         1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~--~----~~~   74 (274)
T cd02509           1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE--G----LPE   74 (274)
T ss_pred             CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh--c----CCC
Confidence            6899999999999999996 79999999999 99999999999998 59999999986 45677777754  1    123


Q ss_pred             EEEEeCCCccCHHHHHHHHHhccccc----CC-EEEEeCceecc--hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          105 VKTIESHNIISAGDALRLIYEQNVIH----GD-FVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       105 i~~i~~~~~~~~gdalr~~~~~~~i~----~d-fLlv~gD~i~~--~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                      +.++.++..+|+++|+.....  .+.    ++ +||++||++..  .+|.+++++|.+..+  +++++|+.+++..|   
T Consensus        75 ~~ii~ep~~~gTa~ai~~a~~--~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~--~~~~vt~gi~p~~~---  147 (274)
T cd02509          75 ENIILEPEGRNTAPAIALAAL--YLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRP---  147 (274)
T ss_pred             ceEEECCCCCCcHHHHHHHHH--HHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHH--cCCEEEEEeeecCC---
Confidence            566777778999999886432  222    23 89999999765  678888887765332  46789998887653   


Q ss_pred             CcccccCCCceEEEEeCCC-C---eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143          178 THQSRLGTDELFMAIDPNT-K---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL  245 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~~~-~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl  245 (616)
                        .++||    ++..+... +   +|..|.|||+.....     ..+..      ...+.++|||+++++++
T Consensus       148 --~t~yG----yI~~~~~~~~~~~~V~~f~EKP~~~~a~-----~~~~~------g~~~wNsGiyi~~~~~l  202 (274)
T cd02509         148 --ETGYG----YIEAGEKLGGGVYRVKRFVEKPDLETAK-----EYLES------GNYLWNSGIFLFRAKTF  202 (274)
T ss_pred             --CCCeE----EEEeCCcCCCCceEEeEEEECcChHHHH-----HHhhc------CCeEEECceeeeeHHHH
Confidence              35787    88887532 2   899999998632110     01110      13467899999995544

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.82  E-value=4.9e-19  Score=176.97  Aligned_cols=218  Identities=19%  Similarity=0.279  Sum_probs=151.1

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES  110 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~  110 (616)
                      |||||+|+|+||++   ..||+|+|++|+|||+|+|+.|..+|+.+|+|++++..+++.+++..        +.+.++.+
T Consensus         1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~~~~~~~   69 (229)
T cd02540           1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PNVEFVLQ   69 (229)
T ss_pred             CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CCcEEEEC
Confidence            69999999999996   68999999999999999999999999999999999888889888864        23555666


Q ss_pred             CCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          111 HNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       111 ~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      +...|++++++...  ..+.   +.|+++.||+  +...++..+++.|++.     ++..++.+.+..     ++.+++ 
T Consensus        70 ~~~~g~~~ai~~a~--~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~-----~p~~~~-  136 (229)
T cd02540          70 EEQLGTGHAVKQAL--PALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA-----GADVTVLTAELE-----DPTGYG-  136 (229)
T ss_pred             CCCCCCHHHHHHHH--HhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCCcc-
Confidence            66789999988643  3443   3499999998  5677999999988763     244444444432     334555 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~~  264 (616)
                         .+..+. +++|..+.++|......           +    ...++.+|+|++++..+ .++........-...++..
T Consensus       137 ---~~~~~~-~~~v~~~~ek~~~~~~~-----------~----~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d  197 (229)
T cd02540         137 ---RIIRDG-NGKVLRIVEEKDATEEE-----------K----AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD  197 (229)
T ss_pred             ---EEEEcC-CCCEEEEEECCCCChHH-----------H----hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence               555553 57898998876421000           0    12467899999998755 4454311000001233455


Q ss_pred             hhhccc-cCceEEEEEccccchh--hccChh
Q 007143          265 LLLDDI-MGYKIFTHEIHSSYAA--RIDNYR  292 (616)
Q Consensus       265 ~l~~~i-~g~~I~~~~~~~~y~~--~V~s~~  292 (616)
                      +++..+ .|.+++++..+ +||.  .|+++.
T Consensus       198 ~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~  227 (229)
T cd02540         198 IIALAVADGLKVAAVLAD-DEEEVLGVNDRV  227 (229)
T ss_pred             HHHHHHHCCCEEEEEEcC-CcceEecCCChH
Confidence            555444 46789999886 6654  455543

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.81  E-value=3.1e-19  Score=196.54  Aligned_cols=238  Identities=14%  Similarity=0.164  Sum_probs=160.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCC-CCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcE-
Q 007143           29 LQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT-  104 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~-~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~-  104 (616)
                      |.+||||+|.|+||+|+|.. +||+|+|++| +|||+|+++.|...|+++++|+++.. ...+++.+...      +++ 
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~------~~~~   74 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI------GKLA   74 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc------CCCc
Confidence            57999999999999999996 8999999977 89999999999999999999988753 34566666542      122 


Q ss_pred             EEEEeCCCccCHHHHHHHHHhcccc----c-CC-EEEEeCcee-cc-hhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143          105 VKTIESHNIISAGDALRLIYEQNVI----H-GD-FVLISGDTV-SN-MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP  176 (616)
Q Consensus       105 i~~i~~~~~~~~gdalr~~~~~~~i----~-~d-fLlv~gD~i-~~-~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~  176 (616)
                      ..++.++..+|||.|+....  .++    . ++ |||++||++ .+ ..|.++++++.+..+  +++++|+.+++..|  
T Consensus        75 ~~~i~Ep~~~gTa~ai~~aa--~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~--~~~lvtlgi~p~~p--  148 (468)
T TIGR01479        75 SNIILEPVGRNTAPAIALAA--LLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAA--EGKLVTFGIVPTHP--  148 (468)
T ss_pred             ceEEecccccCchHHHHHHH--HHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHh--cCCEEEEEecCCCC--
Confidence            34677788899999987532  222    2 34 899999974 44 468999988764322  25688888876543  


Q ss_pred             CCcccccCCCceEEEEeC-----CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeC----------
Q 007143          177 ITHQSRLGTDELFMAIDP-----NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICS----------  241 (616)
Q Consensus       177 ~~~~~r~~~~~~vv~id~-----~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcs----------  241 (616)
                         .++||    ++..++     ..++|..|.|||+....     ...+.      -.+.+.++|||+++          
T Consensus       149 ---~t~YG----yI~~~~~~~~~~~~~V~~f~EKP~~~~a-----~~~l~------~g~~~wNsGif~~~~~~ll~~l~~  210 (468)
T TIGR01479       149 ---ETGYG----YIRRGEPLAGEDVYQVQRFVEKPDLATA-----QAYLE------SGDYYWNSGMFLFRASRYLAELKK  210 (468)
T ss_pred             ---CCCce----EEEeCCccCCCCceEEeEEEECCChHHH-----HHHHh------cCCeEEEeeEEEEEHHHHHHHHHH
Confidence               35788    888774     23689999999863211     01111      11347789999999          


Q ss_pred             --HhHHhhhhcC---CCh----hhHHHHhhhhhh----hc--cccCceEEEEEccccchhhccChhhHHHH
Q 007143          242 --PEVLSLFTDN---FDY----QHLRRHFVKGLL----LD--DIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       242 --p~vl~lf~dn---fd~----q~lr~dfv~~~l----~~--~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                        |+++..+..-   +..    ..+..+..+.+-    ..  +.+..++++...+ .+|.|+++|.++..+
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~-~~W~DvGsw~~l~~~  280 (468)
T TIGR01479       211 HAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMD-AGWSDVGSWSALWEI  280 (468)
T ss_pred             HCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCC-CCccccCCHHHHHHh
Confidence              6555554321   100    001011111000    00  2245568887775 789999999998875

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.80  E-value=6.6e-18  Score=170.92  Aligned_cols=237  Identities=14%  Similarity=0.138  Sum_probs=155.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+-+||||+|.++||.      ||+|+|++|+|||+|+++.|..+|+++|+|++++  +.+.+++...      ++++.+
T Consensus         2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~------~~~v~~   67 (245)
T PRK05450          2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF------GGEVVM   67 (245)
T ss_pred             ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc------CCEEEE
Confidence            4789999999999994      7999999999999999999999999999988753  6677777541      245544


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ..+....|++.+...+........+ ||++.||+  +....|..+++.|+.+.    ....++++....+........++
T Consensus        68 ~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  143 (245)
T PRK05450         68 TSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE----ADMATLAVPIHDAEEAFNPNVVK  143 (245)
T ss_pred             CCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC----CCeEeeeeecCCHHHhcCcCCCE
Confidence            4445556777665544332222345 88899998  55678999999887532    23334433331211000112222


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC--ChhhH-HHHh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHL-RRHF  261 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf--d~q~l-r~df  261 (616)
                           +.+| +.++|++|.++|.+.....      ...   -.-.+++..+|||+++++++..+.+..  .+... ..++
T Consensus       144 -----v~~d-~~g~v~~~~e~~~~~~~~~------~~~---~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~  208 (245)
T PRK05450        144 -----VVLD-ADGRALYFSRAPIPYGRDA------FAD---SAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQ  208 (245)
T ss_pred             -----EEeC-CCCcEEEecCCCCCCCCCc------ccc---ccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHH
Confidence                 3477 4789999999885321100      000   001247889999999999999876421  11111 1112


Q ss_pred             hhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      ++ ++   ..|.+++++.+++.+|.+|+++++|..+++.+
T Consensus       209 ~~-~~---~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        209 LR-AL---ENGYRIHVVVVEEAPSIGVDTPEDLERVRALL  244 (245)
T ss_pred             HH-HH---HCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence            22 22   26778999988745999999999999998653

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=3.1e-18  Score=166.20  Aligned_cols=222  Identities=19%  Similarity=0.303  Sum_probs=147.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEc-CCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFC-CAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~-~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ++|+|||||||+|+||+|   ++||||+.++|+|||+|+|++|+++|+++++||+ ++..+.++.++.+..      ++.
T Consensus         2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~------~~~   72 (239)
T COG1213           2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP------FNA   72 (239)
T ss_pred             CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC------cce
Confidence            468999999999999999   9999999999999999999999999999999999 888999999997742      456


Q ss_pred             EEEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCceecchhH-HHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          106 KTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL-TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       106 ~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l-~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      +++.++.+  .+++-.|.  .++..+..+|++++||+++...+ +.++++- .     +    ++++...+        +
T Consensus        73 ~iv~N~~y~ktN~~~Sl~--~akd~~~~~fii~~sD~vye~~~~e~l~~a~-~-----~----~li~d~~~--------~  132 (239)
T COG1213          73 KIVINSDYEKTNTGYSLL--LAKDYMDGRFILVMSDHVYEPSILERLLEAP-G-----E----GLIVDRRP--------R  132 (239)
T ss_pred             EEEeCCCcccCCceeEEe--eehhhhcCcEEEEeCCEeecHHHHHHHHhCc-C-----C----cEEEeccc--------c
Confidence            67765543  34465555  35667788899999999887754 4444321 1     1    12222211        2


Q ss_pred             cCC-CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc----CCChhhH
Q 007143          183 LGT-DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD----NFDYQHL  257 (616)
Q Consensus       183 ~~~-~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d----nfd~q~l  257 (616)
                      +.. ++...+.+ +.|++....++-.                     -++-.+.||.+++++++..+.+    +-.|+. 
T Consensus       133 ~~~~~ea~kv~~-e~G~i~~igK~l~---------------------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~-  189 (239)
T COG1213         133 YVGVEEATKVKD-EGGRIVEIGKDLT---------------------EYDGEDIGIFILSDSIFEDTYELLVERSEYDY-  189 (239)
T ss_pred             ccccCceeEEEe-cCCEEehhcCCcc---------------------cccceeeeeEEechHHHHHHHHHHhhhhhHHH-
Confidence            211 12223333 3677766654321                     2466788999999987765433    211111 


Q ss_pred             HHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccc
Q 007143          258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW  305 (616)
Q Consensus       258 r~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~  305 (616)
                       +.+++...    ...+.+-..+....|.+|++|+++..+.+.+...|
T Consensus       190 -~~~~~~~~----~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~  232 (239)
T COG1213         190 -REVEKEAG----LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI  232 (239)
T ss_pred             -HHHHHHhC----CceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence             12222211    11111111133469999999999999988876544

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.77  E-value=2.5e-19  Score=181.18  Aligned_cols=173  Identities=21%  Similarity=0.281  Sum_probs=131.5

Q ss_pred             HHHHhhhhhhhccccCceEEEEEccccchhh-------ccChhhHHHHhhhhh---------ccccccccCCCcccCCCc
Q 007143          257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAAR-------IDNYRSYDIVSKDII---------QRWTYPYVPDVKFCGNRA  320 (616)
Q Consensus       257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~-------V~s~~sY~~a~~dil---------~r~~~p~~p~~~~~~~~~  320 (616)
                      +..+|+.++| .++++++++.+.++ .|+.+       +.+|+.|..+++|++         .||+||++|+..+...+.
T Consensus        36 l~~~~~~~~L-~~~l~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~pll~~~gf~a~~~  113 (273)
T PRK11132         36 LKHENLGSAL-SYMLANKLASPIMP-AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQA  113 (273)
T ss_pred             cCCccHHHHH-HHHHHHHhccccCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEEEEECCChHHHHH
Confidence            4678999999 77789999999998 88888       999999999999999         899999999875544333


Q ss_pred             ceeee---------cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCC
Q 007143          321 TKLER---------RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG  391 (616)
Q Consensus       321 ~~~~~---------~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~  391 (616)
                      |++.+         ..+|+...+.+..++.|++.+.||+++.|+.++   ..+||++|.||++|.|     +.+|+||.+
T Consensus       114 yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~---givIG~~a~IGdnv~I-----~~~VtiGg~  185 (273)
T PRK11132        114 YRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHAT---GIVIGETAVIENDVSI-----LQSVTLGGT  185 (273)
T ss_pred             HHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCC---CeEECCCCEECCCCEE-----cCCcEEecC
Confidence            43333         345666666666677777777777777776654   3478888888887765     556666532


Q ss_pred             ---cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          392 ---CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       392 ---~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                         +...+++||++|+||.|++|..+++||+||+||+|++    ||+++++...|
T Consensus       186 ~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~P  240 (273)
T PRK11132        186 GKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP  240 (273)
T ss_pred             cccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecC
Confidence               3345678899999999999999999999999999887    56666666544

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.76  E-value=5.7e-17  Score=163.46  Aligned_cols=227  Identities=16%  Similarity=0.147  Sum_probs=149.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      +.|||||+|.++||.      ||+|+|++|+|||+|+++.|..+ |+++|+|++++  +.+.+++..  +    ++++.+
T Consensus         2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--~----~~~~~~   67 (239)
T cd02517           2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--F----GGKVVM   67 (239)
T ss_pred             EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--c----CCEEEE
Confidence            579999999999996      79999999999999999999999 99999998764  678888754  1    244443


Q ss_pred             EeCCCccCHHHHHHHHHhcccccC--C-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIHG--D-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~--d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      .......|++.+...+.   .+..  + ||++.||+  +....|..+++.|+..    .++.+|+++.+.... . ...+
T Consensus        68 ~~~~~~~gt~~~~~~~~---~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~  138 (239)
T cd02517          68 TSPDHPSGTDRIAEVAE---KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD----PGVDMATLATPISDE-E-ELFN  138 (239)
T ss_pred             cCcccCchhHHHHHHHH---hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----CCCCEEEEEEEcCCH-H-HccC
Confidence            33334567776554332   2332  4 99999997  6677999999988653    135566666554211 0 0002


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC--CChhhHHHH
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRRH  260 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn--fd~q~lr~d  260 (616)
                      ++  ..-+.++. .++|+.|.++|.+.....           . .....+..+|||++++++++.+...  +.+..  .+
T Consensus       139 ~~--~~~v~~~~-~~~v~~~~~~~~~~~~~~-----------~-~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~--~~  201 (239)
T cd02517         139 PN--VVKVVLDK-DGYALYFSRSPIPYPRDS-----------S-EDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQ--IE  201 (239)
T ss_pred             CC--CCEEEECC-CCCEEEecCCCCCCCCCC-----------C-CCCceeEEEEEEEECHHHHHHHHhCCCchhhh--hh
Confidence            22  11245653 578888887653210000           0 0013478899999999999977542  22211  11


Q ss_pred             hhh--hhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          261 FVK--GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       261 fv~--~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      .+.  .++   -.|.+++++..+ ++|.+|+++++|..+.+
T Consensus       202 ~~~~~~~~---~~g~~v~~~~~~-~~w~~i~t~~dl~~a~~  238 (239)
T cd02517         202 SLEQLRAL---ENGYKIKVVETD-HESIGVDTPEDLERVEA  238 (239)
T ss_pred             hHHHHHHH---HCCCceEEEEeC-CCCCCCCCHHHHHHHHh
Confidence            111  122   256779999886 68999999999998764

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.71  E-value=1.2e-16  Score=159.55  Aligned_cols=151  Identities=21%  Similarity=0.232  Sum_probs=121.4

Q ss_pred             EEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCEECC
Q 007143          277 THEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS  356 (616)
Q Consensus       277 ~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~  356 (616)
                      ++.+. +||.++   ++|.++++++|..+.. ..+-...       .....-+++.++.|++++.|.+++.||+++.|++
T Consensus        42 ~~~~~-gyW~Di---~~yl~an~diL~~~~~-~~~~~~~-------~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~  109 (231)
T TIGR03532        42 SGVLF-GEWEDI---EPFIEANKDKIKDYRI-ENDRRNS-------AIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMM  109 (231)
T ss_pred             cEEEE-EeHHHH---HHHHHHhHhhhcceEE-eeccccc-------ccccccccccccEECCCCEEeCCeEECCCCEEec
Confidence            55665 899999   9999999999987641 1110000       0111123678888999999999999999999999


Q ss_pred             CCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          357 NSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       357 ~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.|. +++||++|.|++++.|. +++||++|.|+.++.|.+         ++|+++|+||.+++|.++++||++++|++
T Consensus       110 ~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Iga  189 (231)
T TIGR03532       110 GAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAA  189 (231)
T ss_pred             CcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECC
Confidence            99995 79999999999999995 899999999999999974         88999999999999988888888888888


Q ss_pred             CCEE----CCCCEEcccc
Q 007143          426 RFVV----PAHSKVSLLQ  439 (616)
Q Consensus       426 ~~~v----~~~~~v~~~~  439 (616)
                      +++|    ++++++...|
T Consensus       190 gsvV~~di~~~~vv~G~P  207 (231)
T TIGR03532       190 GAIVTEDVPPNTVVAGVP  207 (231)
T ss_pred             CCEEccccCCCcEEEecC
Confidence            8874    6777777655

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.71  E-value=8.4e-16  Score=154.84  Aligned_cols=228  Identities=16%  Similarity=0.175  Sum_probs=147.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      .+.|||||+|.++||.      +|+|+|++|+|||+|+++.|.++ ++++|+|++++  +.+++++...      ++++.
T Consensus         2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~------~~~v~   67 (238)
T PRK13368          2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF------GGKVV   67 (238)
T ss_pred             cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc------CCeEE
Confidence            4689999999999994      69999999999999999999999 89999998864  6788888652      24443


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      +..+....|++.....   ...+..+ |+++.||+  +...++..+++.|+..    +...+++++.+.... . ....+
T Consensus        68 ~~~~~~~~g~~~~~~a---~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~p  138 (238)
T PRK13368         68 MTSDDHLSGTDRLAEV---MLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDD----PSINVATLCAPISTE-E-EFESP  138 (238)
T ss_pred             ecCccCCCccHHHHHH---HHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC----CCccceeEEEEcCCH-H-HhcCc
Confidence            3333333455543222   2223434 99999996  7788999999988753    223455555443210 0 00001


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC--CChhhHHH-H
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRR-H  260 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn--fd~q~lr~-d  260 (616)
                      +  ...+.++ ..+++..+.++|.+..+.            .. ....+.++|||+++++++..+...  ++.+.+.. +
T Consensus       139 ~--~~~~~~~-~~g~v~~~~~~~~~~~~~------------~~-~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~  202 (238)
T PRK13368        139 N--VVKVVVD-KNGDALYFSRSPIPSRRD------------GE-SARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLE  202 (238)
T ss_pred             C--CCEEEEC-CCCCEEEeeCCCCCCCCC------------CC-CCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHH
Confidence            2  1113455 358898888654211000            00 012367899999999999987542  22111111 3


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      ++ .++.   .|.+++++.. +++|.+|+++++|..+..
T Consensus       203 ~~-~~~~---~g~~v~~~~~-~~~~~DI~t~~Dl~~a~~  236 (238)
T PRK13368        203 QL-RALE---HGEKIRMVEV-AATSIGVDTPEDLERVRA  236 (238)
T ss_pred             HH-HHHH---CCCceEEEEe-CCCCCCCCCHHHHHHHHH
Confidence            33 2322   5778999985 489999999999998754

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.65  E-value=1.5e-15  Score=166.09  Aligned_cols=166  Identities=16%  Similarity=0.233  Sum_probs=121.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCC-CCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCc
Q 007143           27 QPLQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~-~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~  103 (616)
                      +.|.+||||+|+|+||+|+|.. .||+|+|+.| +|||+++++.+...++.+.+|+++. +.+.+++.+.....     .
T Consensus         4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~-----~   78 (478)
T PRK15460          4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK-----L   78 (478)
T ss_pred             CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC-----c
Confidence            4489999999999999999987 7999999965 7999999999999998888888874 46677777754210     1


Q ss_pred             EEEEEeCCCccCHHHHHHHHHh--cccc-c-CC-EEEEeCcee-cch-hHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143          104 TVKTIESHNIISAGDALRLIYE--QNVI-H-GD-FVLISGDTV-SNM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSP  176 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~--~~~i-~-~d-fLlv~gD~i-~~~-~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~  176 (616)
                      ...++.++..+.|+.|+.....  +..- . +. ++++++|++ .+. .|.+.+++..+..+  .+.++|+..++..|. 
T Consensus        79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~--~~~lvt~GI~Pt~Pe-  155 (478)
T PRK15460         79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE--AGKLVTFGIVPDLPE-  155 (478)
T ss_pred             cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh--cCCEEEEecCCCCCC-
Confidence            2357778888899988764321  1111 1 22 889999995 443 47777666554322  268999999887764 


Q ss_pred             CCcccccCCCceEEEEeCC--------CCeEEEeeecCCC
Q 007143          177 ITHQSRLGTDELFMAIDPN--------TKQLLYYEDKADH  208 (616)
Q Consensus       177 ~~~~~r~~~~~~vv~id~~--------~~rvl~~~e~p~~  208 (616)
                          +.||    ++.....        -.+|..|.|||+.
T Consensus       156 ----TgyG----YI~~g~~~~~~~~~~~~~V~~F~EKPd~  187 (478)
T PRK15460        156 ----TGYG----YIRRGEVSAGEQDTVAFEVAQFVEKPNL  187 (478)
T ss_pred             ----CCCC----eEEeCCccccccccCceEeeEEEeCCCH
Confidence                5677    7765532        1479999999973

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.64  E-value=5.1e-15  Score=140.57  Aligned_cols=120  Identities=20%  Similarity=0.282  Sum_probs=102.6

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD  401 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~  401 (616)
                      ...+.+++++++.|++++.|.++++||++|.|++++.|+ +++||++|.|++++.|.+++|++++.|+.++.+.+++|++
T Consensus        13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~   92 (163)
T cd05636          13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE   92 (163)
T ss_pred             EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence            445678899999999999998899999999999999996 6999999999999999999999999999999999999999


Q ss_pred             CcEECCCCEECC------------------------CCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          402 GVIMKAGAVLKP------------------------GVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       402 ~v~Ig~~~~I~~------------------------g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                      ++.|++++++..                        +++|++++.||.+++|.++++|+....++
T Consensus        93 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~  157 (163)
T cd05636          93 NVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY  157 (163)
T ss_pred             CCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence            999999988743                        57888888888888888888887655433

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1.4e-14  Score=146.42  Aligned_cols=245  Identities=13%  Similarity=0.163  Sum_probs=155.8

Q ss_pred             CeEEEEEeCCCCCCCCCCC-CCCCcccceeCC-eehHHHHHHHHHH-CCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCc
Q 007143           28 PLQAILLADSFTTKFRPIT-LERPKVLLPLVN-VPMINYTLAWLEA-AGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT-~~~PK~Llpi~g-~PlI~y~Le~L~~-~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~  103 (616)
                      .|.+||||+|.|+|||||+ ...||++|++.+ +.|++.|++.++. .+.++++|||+. |...+++.+.+....   ..
T Consensus         1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~~   77 (333)
T COG0836           1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---NA   77 (333)
T ss_pred             CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---cc
Confidence            3789999999999999998 568999999965 9999999999999 678999999985 466677777652110   11


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhccccc--CC--EEEEeCceec-ch-hHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIH--GD--FVLISGDTVS-NM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~--~d--fLlv~gD~i~-~~-~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                      .- ++.++..+.|+.|+.... ....+  +|  ++|++.|++. +. .+...++...+-  ..++.++|+..++..|.  
T Consensus        78 ~~-illEP~gRnTApAIA~aa-~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~--A~~g~lVTfGI~Pt~Pe--  151 (333)
T COG0836          78 AG-IILEPEGRNTAPAIALAA-LSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKA--AEEGGIVTFGIPPTRPE--  151 (333)
T ss_pred             cc-eEeccCCCCcHHHHHHHH-HHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHH--HHcCCEEEEecCCCCCc--
Confidence            12 677788888998887542 22222  24  8999999954 43 466666654443  23458999998887664  


Q ss_pred             CcccccCCCceEEEEeC-----CCCeEEEeeecCCCC-------CcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143          178 THQSRLGTDELFMAIDP-----NTKQLLYYEDKADHS-------KGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL  245 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~-----~~~rvl~~~e~p~~~-------~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl  245 (616)
                         +.||    ++....     ...+|-.|.|||+..       .|.|.++.++|...      .+.+--...-+.|+++
T Consensus       152 ---TGYG----YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fr------a~~~l~e~~~~~P~i~  218 (333)
T COG0836         152 ---TGYG----YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFR------ASVFLEELKKHQPDIY  218 (333)
T ss_pred             ---cCcc----eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEE------HHHHHHHHHhhCcHHH
Confidence               4566    554422     256788999999822       45566666655431      1111111222345554


Q ss_pred             hhhhcC------CC--------hhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHH
Q 007143          246 SLFTDN------FD--------YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV  297 (616)
Q Consensus       246 ~lf~dn------fd--------~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a  297 (616)
                      ....+-      ++        |+......+...+  +.+..++++...+ -.|.|++||.+.+++
T Consensus       219 ~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAi--MEkt~~~aVVp~~-f~WsDlGsW~Al~~~  281 (333)
T COG0836         219 CAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAI--MEKTSKAAVVPAD-FGWSDLGSWHALWEV  281 (333)
T ss_pred             HHHHHHHhcccccchhcccHHHHhhCcccchhHHH--HhhhcceEEEecC-CCcccccCHHHHHHH
Confidence            432221      11        1111111221111  1244577777775 799999999987765

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.60  E-value=1.6e-14  Score=136.09  Aligned_cols=109  Identities=19%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      ++.++.+++++.|.+++.||++|.|+++++|.    .++||++|.|+++|+|     .+++|++++.|+.++++.+++||
T Consensus         3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig   82 (155)
T cd04745           3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIG   82 (155)
T ss_pred             cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEEC
Confidence            46677888888888899999999999999996    4899999999999999     56999999999999999999999


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ++++||.++.|..+++|+++++|+++++|.+++.+...
T Consensus        83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~  120 (155)
T cd04745          83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPR  120 (155)
T ss_pred             CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCC
Confidence            99999999999999999999999999988887777643

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.60  E-value=1.8e-14  Score=136.85  Aligned_cols=115  Identities=21%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEEC
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      .....+++++++++.|++++.|.++++||++|.|++++.|.+++||++|.|+.++.+.+++||+++.|++++.+.+..+.
T Consensus        29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~  108 (163)
T cd05636          29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFD  108 (163)
T ss_pred             CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcC
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999998542111


Q ss_pred             -------------------CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          401 -------------------DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       401 -------------------~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                                         .++.|+++++|+.+++|.++++||++++|++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         109 DKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             CcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence                               13444444444444455555555555555555544

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.60  E-value=1.1e-14  Score=141.41  Aligned_cols=108  Identities=19%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      +++++.|++++.|.+++.||++|.|+++|+|+    .++||++|.||++|+|     .+++||++++|+.++.|.+|+|+
T Consensus        11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg   90 (192)
T TIGR02287        11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG   90 (192)
T ss_pred             CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence            67888999999998999999999999999996    5799999999999999     46999999999999999999999


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +++.||.+++|..+++||+++.|+++++|.+++.+..
T Consensus        91 ~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~  127 (192)
T TIGR02287        91 RNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPA  127 (192)
T ss_pred             CCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECC
Confidence            9999999999999999999999999998888777754

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.59  E-value=2.2e-14  Score=136.23  Aligned_cols=109  Identities=19%  Similarity=0.273  Sum_probs=96.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEec-----------eEECCCCEECCCcEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----------SYIWDNVIIEDGCEL  394 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~-----------s~I~~~v~Ig~~~~I  394 (616)
                      +++++.|++++.|.+++.||++|.|++++.|.    .++||++|.|+++|+|.+           +.|++++.+..++.|
T Consensus         2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i   81 (164)
T cd04646           2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC   81 (164)
T ss_pred             cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence            57788899999998999999999999999984    579999999999999975           468888888889999


Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .+++||++|+||.+++|.+|++||++++||++++|.+++.+...
T Consensus        82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~  125 (164)
T cd04646          82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN  125 (164)
T ss_pred             EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence            99999999999999999999999999999999988888777543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.57  E-value=3e-14  Score=138.80  Aligned_cols=107  Identities=15%  Similarity=0.202  Sum_probs=96.1

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEE
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIV  399 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siI  399 (616)
                      .+++++.|++++.|.+++.||++|.|+++++|+.    ++||++|.||++|+|+     +++|++++.||.++.+.+++|
T Consensus        12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI   91 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI   91 (196)
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence            3577888899998888999999999999999964    5899999999999996     478999999999999999999


Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      |++|+||.+++|.+|++||++++|++|++|.++..+
T Consensus        92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~i  127 (196)
T PRK13627         92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG  127 (196)
T ss_pred             CCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCc
Confidence            999999999999999999999999999988776654

>PLN02472 uncharacterized protein

Probab=99.55  E-value=7.3e-14  Score=140.35  Aligned_cols=109  Identities=12%  Similarity=0.155  Sum_probs=99.6

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I  394 (616)
                      ++.++.+.+++.|.+++.||+++.|+++++|+    ..+||++|.|+++|+|+           +++||++|+||.+|.|
T Consensus        62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L  141 (246)
T PLN02472         62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL  141 (246)
T ss_pred             cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence            66778889999998999999999999999985    37899999999999995           5899999999999999


Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .+|+|+++|.||.+++|.+|++|+++++|+++++|+++..+...
T Consensus       142 ~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g  185 (246)
T PLN02472        142 RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTG  185 (246)
T ss_pred             CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCC
Confidence            99999999999999999999999999999999999988888653

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.55  E-value=4.1e-14  Score=132.36  Aligned_cols=108  Identities=23%  Similarity=0.246  Sum_probs=99.4

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      +++.+.+++++.|-+++.||+++.|.++++|+    ...||++|.|.+||+|+     .+.|+++++||.++.|.+|.|+
T Consensus        14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig   93 (176)
T COG0663          14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIG   93 (176)
T ss_pred             CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEEC
Confidence            56668888899988999999999999999995    57899999999999997     5799999999999999999999


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++|.||-|++|.+||.||++|.||+|+.|+++.++..
T Consensus        94 ~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~  130 (176)
T COG0663          94 DNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG  130 (176)
T ss_pred             CCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCC
Confidence            9999999999999999999999999999988887654

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.55  E-value=6.3e-14  Score=142.75  Aligned_cols=122  Identities=17%  Similarity=0.113  Sum_probs=86.8

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEe--------c
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------G  379 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~--------~  379 (616)
                      +....++++++.++.|++.|.|++++.||++|.|+++++|+             +++||++|.|+++|+|.        .
T Consensus        23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~  102 (254)
T cd03351          23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV  102 (254)
T ss_pred             CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence            33445566777777777777777777777777777777775             57788888888888875        3


Q ss_pred             eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          380 SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                      ++||+++.|+.++.| .+++||++|+|+.++.|..+++||++|.|+.++.|.++++|+....++
T Consensus       103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig  166 (254)
T cd03351         103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVG  166 (254)
T ss_pred             eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEEC
Confidence            677777777777777 567777777777777777777777777777766666666666554333

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PLN02296 carbonate dehydratase

Probab=99.54  E-value=6.9e-14  Score=142.32  Aligned_cols=109  Identities=24%  Similarity=0.266  Sum_probs=97.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I  394 (616)
                      ++.++.|++++.|.+++.||++|.|+++|+|.    +++||++|.|+++|+|+           +++||++|+|+.+|+|
T Consensus        55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI  134 (269)
T PLN02296         55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL  134 (269)
T ss_pred             cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence            66778888888888889999999999999996    35899999999999995           5899999999999999


Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .+++|+++|+||.+++|.+|++|+++++|++|++|+++++|...
T Consensus       135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~  178 (269)
T PLN02296        135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG  178 (269)
T ss_pred             cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence            99999999999999999999999999999999988888776543

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.53  E-value=1.7e-13  Score=128.93  Aligned_cols=109  Identities=25%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      +++++.+++++.|.+++.||++|.|++++.|..    ++||++|.|+++|.|..     ++||+++.|+.+|++.+++||
T Consensus         3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig   82 (154)
T cd04650           3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVG   82 (154)
T ss_pred             cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEEC
Confidence            567788888888888999999999999999975    59999999999999975     899999999999999999999


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ++++|+.++.|..+++|+++++|++++.|.++..+...
T Consensus        83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~  120 (154)
T cd04650          83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDY  120 (154)
T ss_pred             CCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCC
Confidence            99999999999989999999999998888877766543

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.53  E-value=1.3e-13  Score=140.40  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEe--------ce
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------GS  380 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~--------~s  380 (616)
                      ....+++.+++++.|+++|.|.+++.||++|.|+++++|+             +++||++|.|+++|+|.        .+
T Consensus        23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~  102 (254)
T TIGR01852        23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT  102 (254)
T ss_pred             CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence            3445566677777777777777778888888888888885             47788888888888885        35


Q ss_pred             EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                      +||+++.|+.++.| .++.||++++|+.++.|..+++||++|.||.++.|.++++|+....++
T Consensus       103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig  165 (254)
T TIGR01852       103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIG  165 (254)
T ss_pred             EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEe
Confidence            77777777777777 567777777777777777777777777777777666666665544333

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.52  E-value=1.8e-13  Score=139.47  Aligned_cols=117  Identities=20%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII  388 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I  388 (616)
                      ...+..++++++.|++++.|++++.||++|.|+++++|. +++||++|.|+++++|.             ++.|++++.|
T Consensus         7 ~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I   86 (254)
T cd03351           7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTI   86 (254)
T ss_pred             EECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEE
Confidence            345667788899999999999999999999999999996 79999999999999996             6889999999


Q ss_pred             CCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          389 EDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       389 g~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      +++|+|..        ++||+++.|+++++|..+|+||++|+|++++.+..+++|+...
T Consensus        87 g~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~  145 (254)
T cd03351          87 REFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYA  145 (254)
T ss_pred             CCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCc
Confidence            99999963        7788888888877777677777766666665555544444433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.52  E-value=1.7e-13  Score=134.55  Aligned_cols=107  Identities=18%  Similarity=0.160  Sum_probs=83.5

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEece------------
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV------------  397 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s------------  397 (616)
                      +++++.|++++.| .++.||+++.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|...            
T Consensus         5 ~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~   83 (204)
T TIGR03308         5 LSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF   83 (204)
T ss_pred             cCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence            5677889999999 468999999999999999999999999999999999999999999999988521            


Q ss_pred             --------------------EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          398 --------------------IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       398 --------------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                                          ....++.||++++|+.+++|.++++||++++|+++++|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~  143 (204)
T TIGR03308        84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTK  143 (204)
T ss_pred             ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence                                0124566666666666666666666666666666666654

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.51  E-value=2.8e-13  Score=127.28  Aligned_cols=109  Identities=19%  Similarity=0.234  Sum_probs=96.9

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      +++++.++++++|.+++.||+++.|+++++|.    +++||++|.|+++|+|..     ++|++++.|+.+|++.+++|+
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig   81 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG   81 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence            45677888888888889999999999999885    369999999999999986     599999999999999999999


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ++++|+.++.|..+++|+++|.|+++++|.+++.+...
T Consensus        82 ~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~  119 (153)
T cd04645          82 DNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPG  119 (153)
T ss_pred             CCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCC
Confidence            99999999999989999999999998888877777643

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.51  E-value=4.4e-13  Score=130.88  Aligned_cols=80  Identities=28%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCC
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDG  402 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~  402 (616)
                      ..+.+++++++.|++++.|++++.||++|.|++++.|.++.||++|.|++++.|.+++|++++.|+.++.|. +++|+++
T Consensus        12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~   91 (193)
T cd03353          12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG   91 (193)
T ss_pred             EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence            345677777777777777777777787788877777777777777777777777777766666666666654 3444433


Q ss_pred             c
Q 007143          403 V  403 (616)
Q Consensus       403 v  403 (616)
                      +
T Consensus        92 ~   92 (193)
T cd03353          92 V   92 (193)
T ss_pred             C
Confidence            3

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.50  E-value=4.6e-14  Score=131.66  Aligned_cols=106  Identities=22%  Similarity=0.398  Sum_probs=84.1

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |.|||||||+|+||.|||...||+||.|.|+|||+++|++|..+|+.+|+||+|+..+++. |+.+.       ..|+.+
T Consensus         1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkdK-------y~vtLv   72 (231)
T COG4750           1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKDK-------YDVTLV   72 (231)
T ss_pred             CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHHh-------cCeEEE
Confidence            5799999999999999999999999999999999999999999999999999999988875 66652       357778


Q ss_pred             eCCCccCHHHHHHHHHhcccccCCEEEEeCceecc
Q 007143          109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSN  143 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~  143 (616)
                      ..+.....-..-....+++++.+ -.++.+|.+..
T Consensus        73 yN~kY~~yNn~ySlyla~d~l~n-tYiidsDnyl~  106 (231)
T COG4750          73 YNPKYREYNNIYSLYLARDFLNN-TYIIDSDNYLT  106 (231)
T ss_pred             eCchHHhhhhHHHHHHHHHHhcc-cEEeccchHhh
Confidence            77765443333333345655554 44567887543

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.49  E-value=5.6e-13  Score=135.81  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=90.0

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII  388 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I  388 (616)
                      +..+.+++++++.|++.+.|++++.||+++.|++++.|. +++||++|.|+++++|.             +++||+++.|
T Consensus         6 ~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I   85 (254)
T TIGR01852         6 IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI   85 (254)
T ss_pred             EeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence            345667788888888888888899999999999999885 89999999999999996             5889999999


Q ss_pred             CCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       389 g~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +++|+|.        .++||+++.|+.++.|..+|+||++|.|++++.+..+++|+.
T Consensus        86 ~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd  142 (254)
T TIGR01852        86 REFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGD  142 (254)
T ss_pred             CCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECC
Confidence            9999996        457777777777777666666666666655555544444443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.48  E-value=3.6e-13  Score=137.68  Aligned_cols=51  Identities=31%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI  377 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I  377 (616)
                      .+.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++++|
T Consensus        14 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I   65 (262)
T PRK05289         14 GAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI   65 (262)
T ss_pred             CCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence            33344444444444444444444444444444442 4445555555555444

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.47  E-value=8.9e-13  Score=127.50  Aligned_cols=115  Identities=13%  Similarity=0.155  Sum_probs=88.1

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |.|||||+|+|+||++    .||+|+|++|+|||+|+++.|..+++++|+|+++++.+.++.|+.+..        ..+.
T Consensus         1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~--------~~~~   68 (183)
T TIGR00454         1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY--------KDYK   68 (183)
T ss_pred             CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC--------cEEE
Confidence            6899999999999986    699999999999999999999999999999999988888998886521        1122


Q ss_pred             eCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHHHh
Q 007143          109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      . ....|....+..........++||+++||+  +....+..+++.+...
T Consensus        69 ~-~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~  117 (183)
T TIGR00454        69 N-ASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCI  117 (183)
T ss_pred             e-cCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence            2 233454444443322111235699999998  6677899999987664

At this time this gene appears to be present only in Archea

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.47  E-value=4.9e-13  Score=136.65  Aligned_cols=123  Identities=20%  Similarity=0.147  Sum_probs=95.7

Q ss_pred             cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------
Q 007143          320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG-------  379 (616)
Q Consensus       320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~-------  379 (616)
                      ++....++++++.++.|++.+.|.+++.||++|.|+++++|+             .++||++|.|+++|+|..       
T Consensus        25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~  104 (262)
T PRK05289         25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG  104 (262)
T ss_pred             CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence            345556778888888888888888899999999999999996             488999999999999974       


Q ss_pred             -eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          380 -SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       380 -s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                       +.||+++.|+.+++|. +|+||++++|+.++.+..+++|+++|.||.++.|.++++|+....++
T Consensus       105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig  169 (262)
T PRK05289        105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVG  169 (262)
T ss_pred             eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEe
Confidence             4789998888888885 68888888877777776666777766666666666555555544333

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.46  E-value=1.1e-12  Score=134.18  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=8.9

Q ss_pred             eEECCCcEECCCCEECCC
Q 007143          397 VIVCDGVIMKAGAVLKPG  414 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g  414 (616)
                      .+|+++|.||.+++|.++
T Consensus       203 V~Igd~VeIGanT~Idrg  220 (338)
T COG1044         203 VIIGDDVEIGANTTIDRG  220 (338)
T ss_pred             EEECCceEEcccceeccc
Confidence            444555555555554444

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.46  E-value=1.1e-12  Score=133.25  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE  378 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~  378 (616)
                      +..++.++.|++.|.|++++.||++|.|+++++|. ++.||++|.|++++.|.
T Consensus        11 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig   63 (255)
T PRK12461         11 SAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG   63 (255)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence            33444444455555555555555555555555553 45555555555555553

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.46  E-value=1.5e-12  Score=123.50  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=75.8

Q ss_pred             CcEECCCCEECC--CcEECCCCEECCCCEEec----eEECCCCEECCCCEEec-------------eEECCCCEECCCcE
Q 007143          333 EIEQSRSAQVGS--FTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-------------SYIWDNVIIEDGCE  393 (616)
Q Consensus       333 ~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~~-------------s~I~~~v~Ig~~~~  393 (616)
                      +.+|++.+.|.+  ++.||+++.|+++++|..    ++||++|.|+++|+|.+             +.|++++.|+++|.
T Consensus         7 ~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~   86 (161)
T cd03359           7 GNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCV   86 (161)
T ss_pred             CCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCE
Confidence            344555555532  556666666666666642    46777777777777653             46888888888888


Q ss_pred             EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      +.++.|+++++||++++|+.+++|++++.|+++++|+++++++...
T Consensus        87 i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~  132 (161)
T cd03359          87 VNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS  132 (161)
T ss_pred             EEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence            8888888888888888888888888888888877777777765443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.45  E-value=8.6e-13  Score=132.50  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-ceEECCCCEECCCcEE---------eceE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL---------RHVI  398 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I---------~~si  398 (616)
                      ...++.+.+++.|.++++||+++.|+++ .| .++.||++|+|+.+++|+ ++.|+++|.|+.++.|         .+++
T Consensus        97 ~~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~Vi  175 (269)
T TIGR00965        97 KKAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI  175 (269)
T ss_pred             ecCCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeE
Confidence            3445555666666666666666666654 23 356677777777777664 4667777777777666         3578


Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      |+++|+||++|.|.+|++||++++||+|++|+++++|..
T Consensus       176 IgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~  214 (269)
T TIGR00965       176 IEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYD  214 (269)
T ss_pred             ECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence            899999999999998999999999999999998888875

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.45  E-value=2.2e-12  Score=135.56  Aligned_cols=70  Identities=29%  Similarity=0.348  Sum_probs=38.0

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I  394 (616)
                      .+.+.+++++.|++++.|++++.||++|.|+++++|+ +++||++|.|+++|+|. ++.|+++|.|+++|+|
T Consensus       101 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI  172 (324)
T TIGR01853       101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI  172 (324)
T ss_pred             CCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence            3344455555555555555555555555555555552 55555555555555554 5555555555555555

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.44  E-value=1.5e-12  Score=136.87  Aligned_cols=116  Identities=18%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---------------------c
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------------------G  379 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---------------------~  379 (616)
                      ....++++++.++.|++++.|++++.||++|.|+++++|. +++||++|.|+++|+|.                     .
T Consensus       116 ~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~  195 (324)
T TIGR01853       116 VVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR  195 (324)
T ss_pred             cEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccce
Confidence            4445566777777777777777788888888888888886 89999999999999994                     3


Q ss_pred             eEECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          380 SYIWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++|+++|.||.+++|.     +++||+++.|++.+.|+.+|.||++|+|++++.|..+++|+.
T Consensus       196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~  258 (324)
T TIGR01853       196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGR  258 (324)
T ss_pred             EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECC
Confidence            7899999999999884     456666666666666666666666666555554444444443

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.44  E-value=1.1e-12  Score=133.99  Aligned_cols=112  Identities=22%  Similarity=0.283  Sum_probs=65.9

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceEECC
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWD  384 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~I~~  384 (616)
                      .++.+|+++.|+++|.|++++.||++|.|.++++|. ++.||++|.|+++++|.                    +.+|++
T Consensus       128 ~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd  207 (338)
T COG1044         128 AGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD  207 (338)
T ss_pred             CCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC
Confidence            344444444444445555555555555555555554 57888888888888885                    257888


Q ss_pred             CCEECCCcEEec-----eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          385 NVIIEDGCELRH-----VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       385 ~v~Ig~~~~I~~-----siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +|.||.+++|.+     ++|++++.|.+-+.|+.+|.||.+|.|..++-|...+.|+.
T Consensus       208 ~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~  265 (338)
T COG1044         208 DVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGK  265 (338)
T ss_pred             ceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECC
Confidence            888888888843     55555555555555555555555554444444333333333

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.43  E-value=2.1e-12  Score=119.36  Aligned_cols=74  Identities=22%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             EECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143          364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS  433 (616)
Q Consensus       364 ~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~  433 (616)
                      .||++|.|+.++.|. ++.|+++|.|+.++.|.         .++|+++++|+.+++|.++++|+++++|+++++|.+++
T Consensus        33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~  112 (139)
T cd03350          33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQST  112 (139)
T ss_pred             EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCe
Confidence            344444444444442 34455555555555553         46778888888888888888888888888888888777


Q ss_pred             EEcc
Q 007143          434 KVSL  437 (616)
Q Consensus       434 ~v~~  437 (616)
                      +|+.
T Consensus       113 ~I~~  116 (139)
T cd03350         113 PIYD  116 (139)
T ss_pred             Eecc
Confidence            7754

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.42  E-value=1.5e-12  Score=116.70  Aligned_cols=100  Identities=25%  Similarity=0.273  Sum_probs=85.3

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG  408 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~  408 (616)
                      +++++.|++++.|++++.||++|+|++++.|. +++||++|.|++++.|.++. +.+..+..++.+.+++|+++++||.+
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~-~~~~~~~~~~~~~~~~Ig~~~~Ig~~   79 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDL-YPRSKIYRKWELKGTTVKRGASIGAN   79 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCC-CCccccccccccCCcEECCCcEECcC
Confidence            35778888888998899999999999999994 89999999999999998864 44555566888999999999999999


Q ss_pred             CEECCCCEECCCcEECCCCEEC
Q 007143          409 AVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       409 ~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      +.|.++++|++++.|++++++.
T Consensus        80 ~~v~~~~~ig~~~~i~~~~~v~  101 (119)
T cd03358          80 ATILPGVTIGEYALVGAGAVVT  101 (119)
T ss_pred             CEEeCCcEECCCCEEccCCEEe
Confidence            9999889999888888887754

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.42  E-value=1.5e-12  Score=108.74  Aligned_cols=79  Identities=34%  Similarity=0.596  Sum_probs=67.1

Q ss_pred             ECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143          348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF  427 (616)
Q Consensus       348 Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~  427 (616)
                      ||+++.|++++.|.+++||++|.|+++|+|.+++|++++.|+.+|.|.+++|++++.|++++.|. +|+|+++++|++++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-DCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-cCEECCCcEeCCCC
Confidence            67778888888888888999999999999988999999999999999999999999999998886 67777777777663

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.41  E-value=1.5e-12  Score=107.80  Aligned_cols=79  Identities=54%  Similarity=1.059  Sum_probs=69.8

Q ss_pred             EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      +||+++.|++++.|.+++||++|.|+++|+|.++.|++++.|+++++|.+++|++++.|+.++.|+++++|++++.||+
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~   79 (79)
T cd05787           1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD   79 (79)
T ss_pred             CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence            3678888888888888999999999999999999999999999999999999999999998888888888777777764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.41  E-value=3.2e-12  Score=135.87  Aligned_cols=69  Identities=29%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I  394 (616)
                      +.+.++.++.|++++.|++++.||++|.|+++++|+ ++.||++|.|+++|+|. ++.|+++|+|+++|+|
T Consensus       111 ~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I  181 (343)
T PRK00892        111 PSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI  181 (343)
T ss_pred             CCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence            344444455555555555555555555555555553 45555555555555553 2345555555555555

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.41  E-value=1.8e-12  Score=107.46  Aligned_cols=79  Identities=30%  Similarity=0.450  Sum_probs=67.0

Q ss_pred             EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      +||+++.|++++.|.+++||++|.||+++.|.+++|++++.|+++|.|.+++|++++.|++++.|..+++|+++++|++
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            3677778888888878889999999999999999999999999999999999999999888888887788887777763

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02917 CMP-KDO synthetase

Probab=99.40  E-value=3.6e-11  Score=124.80  Aligned_cols=235  Identities=14%  Similarity=0.141  Sum_probs=143.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.+.+||+|+|.++||.      +|+|+|++|+|||+|+++.+..++..+.+|+ ++..+.+++++.+.      ++.+.
T Consensus        46 ~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~------~v~vi  112 (293)
T PLN02917         46 SRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF------GADVI  112 (293)
T ss_pred             CcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc------CCEEE
Confidence            45789999999999995      6999999999999999999998865444333 35567888887541      23332


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc--CC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      ...+....|++.+...+   ..+.  .| +|++.||+  +....|..+++.+++.   ......|+++.- .+.   ...
T Consensus       113 ~~~~~~~~GT~~~~~a~---~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~---~~~iv~t~~~~~-~~~---~~~  182 (293)
T PLN02917        113 MTSESCRNGTERCNEAL---KKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA---PDAVFSTAVTSL-KPE---DAS  182 (293)
T ss_pred             eCCcccCCchHHHHHHH---HhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc---CCceEEEEeeec-CHH---Hhc
Confidence            22223445777764322   2333  34 89999999  6677899999988542   112333333321 211   233


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc--CCChhhHHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRR  259 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d--nfd~q~lr~  259 (616)
                      .||  ...++.| +++++++|...+-+..+.  .+.+      .  ..-.+.+.|||.+..+.|..|..  +-..|  +.
T Consensus       183 ~yg--rv~vv~~-~~g~alyfsr~~Ipe~kd--~~~~------~--~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e--~e  247 (293)
T PLN02917        183 DPN--RVKCVVD-NQGYAIYFSRGLIPYNKS--GKVN------P--QFPYLLHLGIQSYDAKFLKIYPELPPTPLQ--LE  247 (293)
T ss_pred             CCC--ceEEEEC-CCCeEEEeecCcCCcCCC--cccc------c--ccceEEEEEEEEeCHHHHHHHHcCCCCccc--ch
Confidence            444  2223455 367877766432111110  0000      0  01135689999999999997753  11111  12


Q ss_pred             HhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          260 HFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       260 dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      -++..+. -...|.+|.+...+ .-...|+|+.++..+.+-+
T Consensus       248 ~yLtdl~-~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~  287 (293)
T PLN02917        248 EDLEQLK-VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALM  287 (293)
T ss_pred             hccHHHH-HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHH
Confidence            3334433 12367789888775 4456899999998887654

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.40  E-value=3.2e-12  Score=129.74  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------e
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG-------S  380 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~-------s  380 (616)
                      +....+++.++.++.|++.+.|.+++.||+++.|++++.|+             .+.||++|.|+++|+|..       +
T Consensus        23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t  102 (255)
T PRK12461         23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVT  102 (255)
T ss_pred             CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcE
Confidence            44455667777777777777787888888888888888885             467999999999999963       3


Q ss_pred             EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      +|++++.+.++++| .+|.||++|+|+.++.|..+++||++|.||.++.|.++++|+...
T Consensus       103 ~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a  162 (255)
T PRK12461        103 RIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA  162 (255)
T ss_pred             EEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence            44444444444444 245555555555555555455555555555555544444444433

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.39  E-value=3.9e-12  Score=135.27  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=78.4

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSY  381 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~  381 (616)
                      ....++.++.++.|++++.|++++.||++|.|+++++|. ++.||++|.|+++|+|.                    +++
T Consensus       126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~  205 (343)
T PRK00892        126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI  205 (343)
T ss_pred             EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence            334455666666666667777777777777777777775 56699999999999994                    478


Q ss_pred             ECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          382 IWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       382 I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      |++++.||+++.|.     +++||+++.|+..+.|+++|.||+++.|++++.|..+++|+
T Consensus       206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG  265 (343)
T PRK00892        206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIG  265 (343)
T ss_pred             ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEEC
Confidence            99999999999884     46677666666666666666666555555444433333333

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.38  E-value=1e-11  Score=118.45  Aligned_cols=111  Identities=19%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             cceEEcCCcEECCCCEECC----CcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEec-eEECCCCEECCCcEEe
Q 007143          326 RGMYRALEIEQSRSAQVGS----FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR  395 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~----~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~  395 (616)
                      +++++++++.|++++.|+.    ++.||++|.|++++.|.     .+.||++|.|++++.|.+ ++|+++|.||.+|.|.
T Consensus        19 ~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~   98 (167)
T cd00710          19 GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF   98 (167)
T ss_pred             eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE
Confidence            4566666666666666654    35677777777777663     466777777777777754 7777777777777777


Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++.||++++||.++.|. ++.|+++..|++++++...+....
T Consensus        99 ~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~  139 (167)
T cd00710          99 NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADA  139 (167)
T ss_pred             CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcccc
Confidence            66666666666666663 455555555555555554444433

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.38  E-value=5.5e-12  Score=139.02  Aligned_cols=111  Identities=18%  Similarity=0.303  Sum_probs=73.7

Q ss_pred             ceEEcCCcEECCCCEECC-----CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCC-----------EEC
Q 007143          327 GMYRALEIEQSRSAQVGS-----FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNV-----------IIE  389 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~-----~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v-----------~Ig  389 (616)
                      ++++++++.|+++|.|++     +++||++|+|++++.|. +++||++|.||++|.|.++.|++++           .||
T Consensus       280 ~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig  359 (446)
T PRK14353        280 NVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIG  359 (446)
T ss_pred             CCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEc
Confidence            344444444444444443     57788888888888886 7888888888888877665555432           445


Q ss_pred             CCcEEec-eEE-------CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          390 DGCELRH-VIV-------CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       390 ~~~~I~~-siI-------g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++|.|.. +++       ..++.||++++|+.+++|.++++||++++|+++++|..
T Consensus       360 ~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~  415 (446)
T PRK14353        360 AGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITE  415 (446)
T ss_pred             CCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECc
Confidence            5555532 222       23577777777777777777788888888888887765

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.38  E-value=9.9e-12  Score=118.52  Aligned_cols=100  Identities=23%  Similarity=0.261  Sum_probs=87.5

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec-e
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH-V  397 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~-s  397 (616)
                      .+++++.|++++.|.+++.||++|.|++++.|.     ++.||++|.|++++.|.     .++|++++.|+.++.|.+ +
T Consensus         4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~   83 (167)
T cd00710           4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA   83 (167)
T ss_pred             EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence            378888899999998899999999999999985     37899999999999995     588999999999999986 9


Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      +||++|+||.++.|. +++||++|.||.++.|
T Consensus        84 ~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i  114 (167)
T cd00710          84 YIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVV  114 (167)
T ss_pred             EECCCCEECCCCEEE-CCEECCCCEEcCCCEE
Confidence            999999999998886 6778888877777765

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.37  E-value=7.5e-12  Score=118.00  Aligned_cols=110  Identities=25%  Similarity=0.369  Sum_probs=85.6

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES  110 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~  110 (616)
                      |||||+|.++||+.     ||+|+|++|+|||+|+++.+..+|+++|+|++++  +++.+++...        .+.++..
T Consensus         1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~--------~~~~v~~   65 (160)
T PF12804_consen    1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY--------GIKVVVD   65 (160)
T ss_dssp             EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT--------TSEEEE-
T ss_pred             CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc--------CceEEEe
Confidence            79999999999984     9999999999999999999999999999999987  5666666442        2445544


Q ss_pred             C-CccCHHHHHHHHHhccc-ccCCEEEEeCce--ecchhHHHHHHHHHHh
Q 007143          111 H-NIISAGDALRLIYEQNV-IHGDFVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       111 ~-~~~~~gdalr~~~~~~~-i~~dfLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      + ...|...++...... + -.+.|++++||+  +....+..+++.+.+.
T Consensus        66 ~~~~~G~~~sl~~a~~~-~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~  114 (160)
T PF12804_consen   66 PEPGQGPLASLLAALSQ-LPSSEPVLVLPCDQPFLSPELLRRLLEALEKS  114 (160)
T ss_dssp             STSSCSHHHHHHHHHHT-STTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred             ccccCChHHHHHHHHHh-cccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence            3 347888888865433 2 234599999999  4566889999988754

...

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.37  E-value=1.2e-11  Score=117.42  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             eecceEEcCCcEECCCCEEC---CCcEECCCCEECCCCEEec-----------eEECCCCEECCCCEEeceEECCCCEEC
Q 007143          324 ERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD-----------SVIGEGCTIGSNVLIEGSYIWDNVIIE  389 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~-----------s~IG~~~~Ig~~~~I~~s~I~~~v~Ig  389 (616)
                      ..+++++++++.|++++.|.   +.+.||++|.|+++++|.+           +.||++|.|+.++.|.+++|+++|.||
T Consensus        14 i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig   93 (164)
T cd04646          14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFE   93 (164)
T ss_pred             EcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEe
Confidence            44788999999999999995   5689999999999999964           457888888888888777777777777


Q ss_pred             CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143          390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS  433 (616)
Q Consensus       390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~  433 (616)
                      .+|.|     ++++.||++++|+++++|..++.|++++++..+.
T Consensus        94 ~~a~I-----~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~  132 (164)
T cd04646          94 SKSFV-----GKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD  132 (164)
T ss_pred             CCCEE-----CCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence            76665     4455555555555555555555555444444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.36  E-value=6.7e-12  Score=126.12  Aligned_cols=108  Identities=28%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---------ceEECCCCEECCCc
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------GSYIWDNVIIEDGC  392 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~  392 (616)
                      ..+.++++++++.|.++ .|..++.||++|.|+.+++|+ +++||++|+|+.++.|.         +++|+++|.||.+|
T Consensus       108 ~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a  186 (269)
T TIGR00965       108 AVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARS  186 (269)
T ss_pred             EECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCC
Confidence            33455556666666543 444556677777777777774 57777777777777663         35677777777666


Q ss_pred             EEeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEc
Q 007143          393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS  436 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v~  436 (616)
                      .|     ..+++||++++|+.|++|+.+++|++..       .||++++|.
T Consensus       187 ~I-----~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~  232 (269)
T TIGR00965       187 EI-----VEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV  232 (269)
T ss_pred             EE-----cCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence            66     4445555555555555555555554432       367777774

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.35  E-value=5.9e-12  Score=127.68  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=51.5

Q ss_pred             eEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143          363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH  432 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~  432 (616)
                      +.||++|+|+.++.|.+ +.|+++|+|+.++.|.         +++|+++|+||.+++|..|++||++++|+++++|.++
T Consensus       133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g  212 (272)
T PRK11830        133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS  212 (272)
T ss_pred             CEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            34444444444444432 3555555555555443         4788888888888888888888888888888888888


Q ss_pred             CEEcc
Q 007143          433 SKVSL  437 (616)
Q Consensus       433 ~~v~~  437 (616)
                      ++|..
T Consensus       213 t~I~~  217 (272)
T PRK11830        213 TKIYD  217 (272)
T ss_pred             eEECc
Confidence            88875

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.35  E-value=2.1e-11  Score=114.84  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             eecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      ..+++++++++.|+++|.|.+   ++.||++|.|+++|.|     .+++||++|.|++++.|.+++|++++.|+.++.| 
T Consensus        15 i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I-   93 (155)
T cd04745          15 LIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVV-   93 (155)
T ss_pred             EEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEE-
Confidence            456788999999999998875   5899999999999999     5699999999999999999999888888877766 


Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                          +++++|+++++|++      +++|.++..|++++++..
T Consensus        94 ----~~g~~Ig~~~~Ig~------~s~v~~~~~i~~~~~v~G  125 (155)
T cd04745          94 ----MDGAVIGEESIVGA------MAFVKAGTVIPPRSLIAG  125 (155)
T ss_pred             ----eCCCEECCCCEECC------CCEeCCCCEeCCCCEEec
Confidence                33344444433333      333344444444444433

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.35  E-value=7e-12  Score=138.27  Aligned_cols=77  Identities=22%  Similarity=0.274  Sum_probs=54.7

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECC
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD  401 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~  401 (616)
                      ..+++++++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. +++|+++|.|+.+|.+.+++|++
T Consensus       276 i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~  353 (451)
T TIGR01173       276 LEGKVKIGDDVVIGPGCVI-KNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK  353 (451)
T ss_pred             EeCceEECCCCEECCCcEE-eeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence            3455667777777777776 36778888888888888788888888888888776 57777777777766655444443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.33  E-value=2.7e-11  Score=111.94  Aligned_cols=105  Identities=28%  Similarity=0.359  Sum_probs=66.8

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCcEE
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL  394 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I  394 (616)
                      .+++++++++.|.+.+.|..++.||+++.|++++.|. +++||++|.|+.++.|.+         ++|++++.|+.++.|
T Consensus        11 ~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I   90 (139)
T cd03350          11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV   90 (139)
T ss_pred             CCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence            3455566666666666666666777777777777774 677788888877777753         556666666666555


Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                           ..+++||+++.|+++++|.++++|+++   +++++|..
T Consensus        91 -----~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~  125 (139)
T cd03350          91 -----VEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYG  125 (139)
T ss_pred             -----CCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEec
Confidence                 555555555555555555556666555   55555543

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.33  E-value=1.8e-11  Score=119.49  Aligned_cols=65  Identities=26%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I  394 (616)
                      ++.++.+++.+.|++++.||+++.|+.++.+.+++||+++.|++.+.|.++.|++++.||.++.+
T Consensus        70 ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~  134 (193)
T cd03353          70 IGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTIT  134 (193)
T ss_pred             ECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEE
Confidence            44444444444444444444444444444444444455555544444444555555555555444

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.32  E-value=5e-11  Score=112.11  Aligned_cols=100  Identities=20%  Similarity=0.210  Sum_probs=76.9

Q ss_pred             eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      ..+++.+++++.|++++.|.+.   +.||++|.|+++|.|..     ++||++|.|+++|+|.+++|++++.|+.++.+.
T Consensus        15 i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~   94 (154)
T cd04650          15 VIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILL   94 (154)
T ss_pred             EEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEe
Confidence            4577889999999999988765   79999999999999964     899999999999999999999999999998873


Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                           .++.||++++|++++.+..+..|+++.+
T Consensus        95 -----~~~~Ig~~~~vg~~~~v~~g~~i~~~~v  122 (154)
T cd04650          95 -----NGAKIGDHVIIGAGAVVTPGKEIPDYSL  122 (154)
T ss_pred             -----CCCEECCCCEECCCCEECCCcEeCCCCE
Confidence                 3344444444444444444444444444

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.32  E-value=3.8e-11  Score=118.25  Aligned_cols=69  Identities=26%  Similarity=0.311  Sum_probs=40.6

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceEECC
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWD  384 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~I~~  384 (616)
                      ..+.+++++.|++++.|++++.||++|.|+++++|. +++||++|.|+++++|.                    .+.|++
T Consensus        18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~   97 (205)
T cd03352          18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGD   97 (205)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECC
Confidence            344455555555555555566666666666666664 36666666666666662                    355666


Q ss_pred             CCEECCCcEE
Q 007143          385 NVIIEDGCEL  394 (616)
Q Consensus       385 ~v~Ig~~~~I  394 (616)
                      ++.|+.++.+
T Consensus        98 ~~~Ig~~~~i  107 (205)
T cd03352          98 DVEIGANTTI  107 (205)
T ss_pred             CEEECCCCEE
Confidence            6666665555

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.31  E-value=4.8e-11  Score=113.13  Aligned_cols=100  Identities=20%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             ecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-------------eEECCCCEECCCCEEeceEECCCCEE
Q 007143          325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIEGSYIWDNVII  388 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-------------s~IG~~~~Ig~~~~I~~s~I~~~v~I  388 (616)
                      ..+++++.++.|+++|.|.++   +.||++|.|+++++|..             ++||++|.|++++.|.+++|++++.|
T Consensus        19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I   98 (161)
T cd03359          19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI   98 (161)
T ss_pred             CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence            358889999999999999865   69999999999999963             47999999999999999888888888


Q ss_pred             CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      +.++.|     ++++.|+++++|+++++|..+++|++++++
T Consensus        99 g~~~~I-----g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv  134 (161)
T cd03359          99 GKNCVI-----GRRCIIKDCVKILDGTVVPPDTVIPPYSVV  134 (161)
T ss_pred             CCCCEE-----cCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence            776655     555555555555544444444444444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.31  E-value=3.3e-11  Score=117.64  Aligned_cols=90  Identities=33%  Similarity=0.484  Sum_probs=53.5

Q ss_pred             CEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCE
Q 007143          340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVV  416 (616)
Q Consensus       340 ~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~v  416 (616)
                      +.|++++.||+++.|+++++|+ +++||++|.|++++.|. ++.|+++++|+.++.|. ++.|+++++||.+++|.++++
T Consensus        94 a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~  173 (201)
T TIGR03570        94 AIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVT  173 (201)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCE
Confidence            3333444444444444444443 35666666666666664 46666777777776665 466666666666666666666


Q ss_pred             ECCCcEECCCCEE
Q 007143          417 LSFKVVIGERFVV  429 (616)
Q Consensus       417 Ig~~v~Ig~~~~v  429 (616)
                      |+++++|+++++|
T Consensus       174 i~~~~~i~~~~~v  186 (201)
T TIGR03570       174 IGAGAIVGAGAVV  186 (201)
T ss_pred             ECCCCEECCCCEE
Confidence            6666666666653

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PLN02296 carbonate dehydratase

Probab=99.30  E-value=2.7e-11  Score=123.37  Aligned_cols=100  Identities=22%  Similarity=0.307  Sum_probs=75.3

Q ss_pred             eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCCEEeceEECCCCEEC
Q 007143          324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVIIE  389 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig  389 (616)
                      ..++++++.++.|.++|.|.+.   +.||++|.|+++|+|.           +++||++|.||++|+|++++|+++|.||
T Consensus        67 V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG  146 (269)
T PLN02296         67 VIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVG  146 (269)
T ss_pred             EEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEEC
Confidence            4467889999999999998765   4999999999999994           6899999999999999888888888887


Q ss_pred             CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      .+++|     .+++.|++++.|++|++|..+++|+++++
T Consensus       147 ~ga~I-----~~gv~Ig~~a~IgagSvV~~~~~I~~~~~  180 (269)
T PLN02296        147 MGATL-----LDGVVVEKHAMVAAGALVRQNTRIPSGEV  180 (269)
T ss_pred             CCcEE-----CCCeEECCCCEECCCCEEecCCEeCCCeE
Confidence            77666     44555555555555444444444444443

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.30  E-value=3.3e-11  Score=117.16  Aligned_cols=100  Identities=13%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             eeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I  394 (616)
                      ...++++++.++.|.++|.|.+   .++||++|.|+++|+|     .+|+||++|.||+++.|++|+|++++.||.++.|
T Consensus        22 ~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I  101 (192)
T TIGR02287        22 VLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVV  101 (192)
T ss_pred             EEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCccc
Confidence            3457889999999999999964   5899999999999999     4699999999999999999999999999888777


Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF  427 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~  427 (616)
                           .+++.||+++.|+++++|..++.|.+++
T Consensus       102 -----~~g~~IG~~s~Vgags~V~~~~~ip~~~  129 (192)
T TIGR02287       102 -----MDGAVIGENSIVAASAFVKAGAEMPAQY  129 (192)
T ss_pred             -----CCCeEECCCCEEcCCCEECCCCEECCCe
Confidence                 4444444444444444444444444333

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.30  E-value=2e-11  Score=101.87  Aligned_cols=79  Identities=27%  Similarity=0.437  Sum_probs=73.5

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA  409 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~  409 (616)
                      +++++.|++++.|. ++.||+++.|++++.|.+++|+++|.|+++|.|.+++|++++.|++++++.+|+|++++.|++++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            57788899999995 79999999999999999999999999999999999999999999999999999999999888764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.30  E-value=3.9e-11  Score=109.59  Aligned_cols=100  Identities=15%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             cEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEEe---------ceEECCC
Q 007143          334 IEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR---------HVIVCDG  402 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~---------~siIg~~  402 (616)
                      +.+.+.+.|...+.||+++.|.+++.|. ++.||++|.|..  +| .+++|+++|.||++|.|.         ...||++
T Consensus         2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~   79 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKR   79 (147)
T ss_pred             eEecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCC
Confidence            3455555665566666666666666553 555566655541  22 134555555555555554         1456666


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      |+||.++.|  ++.||++++||+|++|.++++|..
T Consensus        80 ~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~  112 (147)
T cd04649          80 CLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTL  112 (147)
T ss_pred             CEECCCCEE--eEEECCCCEECCCCEEeCCeEEEE
Confidence            666666666  466777777777777777666654

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.5e-12  Score=136.52  Aligned_cols=92  Identities=28%  Similarity=0.370  Sum_probs=79.6

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCc
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGV  403 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~v  403 (616)
                      ..++.+|.++.|+.++.| .|++||.||.||.+++|.+|+||.+|+||+||+|++|+||++|.|+++|++ .+|+||.++
T Consensus       331 ~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~V  409 (673)
T KOG1461|consen  331 GANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGV  409 (673)
T ss_pred             cceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeee
Confidence            456778888888888888 899999999999999999999999999999999999999999999999999 457777777


Q ss_pred             EECCCCEECCCCEE
Q 007143          404 IMKAGAVLKPGVVL  417 (616)
Q Consensus       404 ~Ig~~~~I~~g~vI  417 (616)
                      +||.+-++..+++|
T Consensus       410 Vv~~~~~l~~ns~~  423 (673)
T KOG1461|consen  410 VVGRNFVLPKNSKV  423 (673)
T ss_pred             EeCCCccccccccc
Confidence            77666666665444

>PLN02472 uncharacterized protein

Probab=99.29  E-value=4.3e-11  Score=120.36  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             eeecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCCEEeceEECCCCEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII  388 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~s~IG~~~~Ig~~~~I~~s~I~~~v~I  388 (616)
                      ...+.++++.++.|..+++|.++   +.||.+|.|+++|+|+           +++||++|.||++|+|.+|+|+++|.|
T Consensus        73 ~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I  152 (246)
T PLN02472         73 VLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII  152 (246)
T ss_pred             EEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence            44567888888888888887654   7889999999999984           588999999999999988888888888


Q ss_pred             CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |.+|.|     .      ++++|+.+|+|+.+++|.++..|+++.++...|
T Consensus       153 G~~svI-----~------~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~P  192 (246)
T PLN02472        153 GQHSIL-----M------EGSLVETHSILEAGSVLPPGRRIPTGELWAGNP  192 (246)
T ss_pred             CCCCEE-----C------CCCEECCCCEECCCCEECCCCEeCCCCEEEecC
Confidence            776654     3      444555555555666666677777777776654

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.29  E-value=2e-11  Score=101.59  Aligned_cols=75  Identities=29%  Similarity=0.314  Sum_probs=53.3

Q ss_pred             CCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEEC
Q 007143          350 YGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG  424 (616)
Q Consensus       350 ~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig  424 (616)
                      +++.|++++.| .+++||++|.||++|+|.+++++++++|++++.|.++++++++.|++++.+..+++|+++++|+
T Consensus         4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824           4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            33344444444 2456777777777777778888888888888888888888888888887777667777777665

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.29  E-value=5e-11  Score=115.33  Aligned_cols=67  Identities=31%  Similarity=0.452  Sum_probs=38.7

Q ss_pred             eEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          363 SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      +.||++|.|++++.|. ++.|++++.|+.++.+. +++||++|+||.++.|.++++|+++++|+++++|
T Consensus       115 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v  183 (197)
T cd03360         115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV  183 (197)
T ss_pred             CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            3455555555555552 45566666666666653 3555666666666666666666666655555554

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=3.3e-11  Score=133.32  Aligned_cols=109  Identities=37%  Similarity=0.431  Sum_probs=90.0

Q ss_pred             cEECCCC-EECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007143          334 IEQSRSA-QVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL  411 (616)
Q Consensus       334 v~i~~~~-~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I  411 (616)
                      ..+++.+ .|++++.||++|.|+++|.|. +++||++|.|+++|+|.+|+||++|+|+.+|+|.+++|++++.||++++|
T Consensus       256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i  335 (459)
T PRK14355        256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL  335 (459)
T ss_pred             EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence            3455553 577778888888888888885 78999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEECCCcEECCCC-----EECCCCEEccccCCC
Q 007143          412 KPGVVLSFKVVIGERF-----VVPAHSKVSLLQQPT  442 (616)
Q Consensus       412 ~~g~vIg~~v~Ig~~~-----~v~~~~~v~~~~~~~  442 (616)
                      .++++|+++++||+++     .|+.++.+...++.+
T Consensus       336 ~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig  371 (459)
T PRK14355        336 RPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLG  371 (459)
T ss_pred             CCCCEeCCCCEECCCccccCCEECCCceeeeecccc
Confidence            9999999999998875     355666665555444

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=2.5e-11  Score=134.13  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECC
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD  401 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~  401 (616)
                      .+++++++++.|+++|.| .+++||++|.|++++.|.+++||++|.||++|+|. +++|+++++||.++.+.+++|++
T Consensus       285 ~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~  361 (456)
T PRK14356        285 YGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGK  361 (456)
T ss_pred             eCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecC
Confidence            356777888888777777 46778888888888877778888888888887775 67777777777776665544443

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.27  E-value=1.9e-11  Score=118.51  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVII  388 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I  388 (616)
                      ...+..-++++|.|++.|.|++++.||++|.|+++++| +.+.||++++|-+.+.|+             ..+||++++|
T Consensus        11 iIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~I   90 (260)
T COG1043          11 IIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI   90 (260)
T ss_pred             eeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeE
Confidence            34455567777888888888888888888888888888 488899999998888886             3578999999


Q ss_pred             CCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       389 g~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      .++++|.        -+.||+++++..+++|...|+||++|++..++++.-...|+
T Consensus        91 RE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~ig  146 (260)
T COG1043          91 REFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVG  146 (260)
T ss_pred             eeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEEC
Confidence            8888884        26778777777777777777777776666666544443333

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.27  E-value=3.2e-11  Score=99.97  Aligned_cols=77  Identities=27%  Similarity=0.430  Sum_probs=68.5

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK  406 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig  406 (616)
                      |+++++.|++++.|.+ +.||++|.|++++.|.+++|+++|.|+++|.|.+++|++++.|+.++.+.+ ++|++++.|+
T Consensus         1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~   78 (79)
T cd03356           1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE   78 (79)
T ss_pred             CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence            5788889999999976 999999999999999999999999999999999999999999999999876 7777776665

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.26  E-value=3.4e-11  Score=105.54  Aligned_cols=79  Identities=23%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             CEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143          352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       352 ~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      +.|++++.|.+++||++|.|+ ++.|.+|+||+++.|+++|+|.+++|++++.||.++.|. +++|++++.|++++.|.+
T Consensus         2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~~~~v~~   79 (104)
T cd04651           2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-RAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-eEEECCCCEECCCCEECC
Confidence            345556666666677777776 677777777777777777777777777777777777764 566666666666655554


Q ss_pred             C
Q 007143          432 H  432 (616)
Q Consensus       432 ~  432 (616)
                      .
T Consensus        80 ~   80 (104)
T cd04651          80 D   80 (104)
T ss_pred             C
Confidence            3

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.26  E-value=3.5e-11  Score=112.00  Aligned_cols=109  Identities=24%  Similarity=0.317  Sum_probs=85.3

Q ss_pred             eEEEEEeCCCCCCCC-CCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFR-PITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~-PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      |.+||+|+|.|+||. |     -|||++++|+|||+|+++.|.+ .+.+|++.++.|...++.|+...      +  +.+
T Consensus         1 m~~iiMAGGrGtRmg~~-----EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~------g--v~v   66 (177)
T COG2266           1 MMAIIMAGGRGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV------G--VKV   66 (177)
T ss_pred             CceEEecCCcccccCCC-----cCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc------C--ceE
Confidence            579999999999999 5     7999999999999999999999 89999999999999999999762      2  556


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCCEEEEeCce-ec-chhHHHHHHHHH
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDT-VS-NMLLTQALQEHK  154 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~-i~-~~~l~~~l~~h~  154 (616)
                      +..+...-..|.-..   ...+..+||++++|+ +. +..|..+++.+.
T Consensus        67 i~tpG~GYv~Dl~~a---l~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          67 IETPGEGYVEDLRFA---LESLGTPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             EEcCCCChHHHHHHH---HHhcCCceEEEecccccCCHHHHHHHHHHHh
Confidence            654433334444332   344667999999999 33 446677776655

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.25  E-value=5e-11  Score=120.91  Aligned_cols=106  Identities=27%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             cceEEcCCcEECCCCEEC-----CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECC
Q 007143          326 RGMYRALEIEQSRSAQVG-----SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED  390 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~-----~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~  390 (616)
                      +++|++.++.|++++.|.     .++.||++|.|+.++.|+ +++||++|+|+.++.|.+         ++|+++|.||.
T Consensus       108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa  187 (272)
T PRK11830        108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA  187 (272)
T ss_pred             CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECC
Confidence            344555555555555443     455666777777776665 457777777777777653         67777777777


Q ss_pred             CcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEc
Q 007143          391 GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS  436 (616)
Q Consensus       391 ~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v~  436 (616)
                      +|.|     ..+++||++++|++|++|+.++.|++.+       .||++++|.
T Consensus       188 ~s~I-----~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv  235 (272)
T PRK11830        188 RSEV-----VEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVV  235 (272)
T ss_pred             CCEE-----cCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEe
Confidence            7766     4444444444444445555555555432       377777775

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.25  E-value=4.8e-10  Score=113.16  Aligned_cols=230  Identities=13%  Similarity=0.125  Sum_probs=130.8

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES  110 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~  110 (616)
                      +||+|+|.|+||.      +|+|+|++|+|||.|+++.+..+++++|+|++..  +.+.+++...      ++++.....
T Consensus         2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~------g~~~v~~~~   67 (238)
T TIGR00466         2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF------GIEVCMTSK   67 (238)
T ss_pred             EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc------CCEEEEeCC
Confidence            7999999999994      7999999999999999999999999999888753  5567666542      233222112


Q ss_pred             CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCc
Q 007143          111 HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE  187 (616)
Q Consensus       111 ~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~  187 (616)
                      ....|+......+.....-..+ ++++.||.  +....+..+++.+++.    +...+|.+.+...+.     ..+..+.
T Consensus        68 ~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~----~~~~a~~~~~~~d~~-----~~~~p~~  138 (238)
T TIGR00466        68 HHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK----NVPMAALAVKIHDAE-----EAFNPNA  138 (238)
T ss_pred             CCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC----CCCEEEEeeecCCHH-----HccCCCc
Confidence            2233433333322211111335 78899999  6667889999987532    122334443332211     1111112


Q ss_pred             eEEEEeCCCCeEEEeeecCCCCCcceEeehHhhh-cCCceEEEeccccceeEeeCHhHHhhhhcCC--ChhhHHHHhhhh
Q 007143          188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLA-ENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHLRRHFVKG  264 (616)
Q Consensus       188 ~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~-~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf--d~q~lr~dfv~~  264 (616)
                      .-++.| ..++.++|...+-+..+.     .+.. ..|..  ..-+...|||-++.++|..|..--  .++...  -+ .
T Consensus       139 vk~v~~-~~g~alyfsr~~ip~~R~-----~~~~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e--~l-e  207 (238)
T TIGR00466       139 VKVVLD-SQGYALYFSRSLIPFDRD-----FFAKRQTPVG--DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIE--KL-E  207 (238)
T ss_pred             eEEEeC-CCCeEEEecCCCCCCCCC-----cccccccccc--cceeEEEEEEeCCHHHHHHHHhCCCCcccccc--hh-H
Confidence            223335 467888876653221111     0100 11111  112456899999999999886421  111110  00 0


Q ss_pred             hhhccccCceEEEEEccccchhhccChhhH
Q 007143          265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSY  294 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY  294 (616)
                      .|.-...|.+|++...+..-...|+|++++
T Consensus       208 qlr~le~g~~i~~~~~~~~~~~~vdt~~d~  237 (238)
T TIGR00466       208 QLRVLYYGEKIHVKIAQEVPSVGVDTQEDL  237 (238)
T ss_pred             HHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence            111123788999887752213478888764

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.25  E-value=1.1e-10  Score=112.93  Aligned_cols=113  Identities=17%  Similarity=0.295  Sum_probs=84.7

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES  110 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~  110 (616)
                      +||||+|.|+||++     ||+|+|++|+|||+|+++.+.+.++++|+|++++..+.+.+.+..       ...+.++..
T Consensus         2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~v~~v~~   69 (188)
T TIGR03310         2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSNITLVHN   69 (188)
T ss_pred             eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCCeEEEEC
Confidence            79999999999985     999999999999999999999999999999999876665444422       123555544


Q ss_pred             CC-ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          111 HN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       111 ~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .. ..|.+.+++.... .....+ ||++.||+  +....++.+++.+...
T Consensus        70 ~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  118 (188)
T TIGR03310        70 PQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK  118 (188)
T ss_pred             cChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence            33 2477777775433 122334 99999998  5566888999887653

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.24  E-value=6.3e-11  Score=98.59  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=69.9

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK  406 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig  406 (616)
                      +++++.|++++.|+++++||++|.|++++.|.+++|+++|.|++++.|.++++++++.|++++.+.. ++|++++.|+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            4677889999999999999999999999999999999999999999999999999999999999976 7777766665

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.24  E-value=1e-10  Score=112.55  Aligned_cols=112  Identities=24%  Similarity=0.307  Sum_probs=84.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      +.+||||+|.++||++     ||+|+|++|+|||+|+++.+...++++|+|++++....+.+++..        ..+.++
T Consensus         1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~--------~~~~~~   67 (186)
T cd04182           1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG--------LPVVVV   67 (186)
T ss_pred             CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC--------CCeEEE
Confidence            3589999999999997     999999999999999999999999999999998776666555432        123334


Q ss_pred             eCC-CccCHHHHHHHHHhccccc--CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ESH-NIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~~-~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ..+ ...|.+.+++....  .+.  .+ +++++||+  +....+..+++.+..
T Consensus        68 ~~~~~~~G~~~~i~~al~--~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  118 (186)
T cd04182          68 INPDWEEGMSSSLAAGLE--ALPADADAVLILLADQPLVTAETLRALIDAFRE  118 (186)
T ss_pred             eCCChhhCHHHHHHHHHH--hccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence            332 33577777775432  233  34 99999999  566788888887664

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.24  E-value=1.6e-10  Score=108.52  Aligned_cols=83  Identities=22%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      ..++++++.++.|++++.|.++   ++||+++.|+++++|..     ++||++|.|+.+|+|.+++|++++.|+.++.+.
T Consensus        14 i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~   93 (153)
T cd04645          14 VIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIIL   93 (153)
T ss_pred             EEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEc
Confidence            3467899999999999998754   69999999999999975     699999999999999999999999999887773


Q ss_pred             -ceEECCCcEEC
Q 007143          396 -HVIVCDGVIMK  406 (616)
Q Consensus       396 -~siIg~~v~Ig  406 (616)
                       +++|+++++|+
T Consensus        94 ~~~~ig~~~~ig  105 (153)
T cd04645          94 DGAVIGKGSIVA  105 (153)
T ss_pred             CCCEECCCCEEC
Confidence             33333333333

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.24  E-value=1.2e-10  Score=109.31  Aligned_cols=107  Identities=22%  Similarity=0.255  Sum_probs=78.8

Q ss_pred             eeeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE  393 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~  393 (616)
                      ....+.+-++.++.|.++++|.+   ...||++|.|.++++|+     .+.||++|.||+++.|++|+|+++|.||-+++
T Consensus        24 A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~  103 (176)
T COG0663          24 ATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGAT  103 (176)
T ss_pred             CEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCce
Confidence            34557788888888888888874   57899999999999994     68999999999999999999999999887776


Q ss_pred             EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |     -++|.||+      +|+||.|+.|-++..+|+++.+...|
T Consensus       104 v-----ldga~IG~------~~iVgAgalV~~~k~~p~~~L~~G~P  138 (176)
T COG0663         104 V-----LDGAVIGD------GSIVGAGALVTPGKEIPGGSLVVGSP  138 (176)
T ss_pred             E-----eCCcEECC------CcEEccCCcccCCcCCCCCeEeecCc
Confidence            6     33333333      33333344444445566666655544

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.23  E-value=1.7e-10  Score=113.65  Aligned_cols=65  Identities=35%  Similarity=0.485  Sum_probs=32.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEec-eEECCCCEECCCcEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL  394 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I  394 (616)
                      +++++.|++.+.|++++.||+++.|++++.| .++.||++|.|+++++|.+ ++|++++.|+++++|
T Consensus         4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i   70 (205)
T cd03352           4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI   70 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence            3444444444445444555555555555544 2445555555555555542 555555555555444

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.23  E-value=4.9e-11  Score=131.64  Aligned_cols=62  Identities=26%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             cEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143          346 TVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA  407 (616)
Q Consensus       346 ~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~  407 (616)
                      +.||+++.|++++.|+ +++||++|.||.++.|.+++|++++.|+.++.+.+++||++|.||+
T Consensus       314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~  376 (450)
T PRK14360        314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGA  376 (450)
T ss_pred             ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECc
Confidence            4455666666666664 5666666666666666555555555554444444444444444433

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.23  E-value=3.4e-11  Score=125.74  Aligned_cols=100  Identities=23%  Similarity=0.235  Sum_probs=87.9

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEEC
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVC  400 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg  400 (616)
                      .+.+..+-+++++.|.+++.|.+++.||++|+||++|+|.+|.||+++.|-..++|++|.|++++.||+.++++ ++.|+
T Consensus       263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~  342 (460)
T COG1207         263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLG  342 (460)
T ss_pred             EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCccc
Confidence            45567778889999999999999999999999999999999999999999999999999999999999999997 68899


Q ss_pred             CCcEECCCCEECCCCEECCCcE
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVV  422 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~  422 (616)
                      ++++||+.+.+. ++.||.+++
T Consensus       343 ~~~hIGNFVEvK-~a~ig~gsK  363 (460)
T COG1207         343 ADVHIGNFVEVK-KATIGKGSK  363 (460)
T ss_pred             CCCeEeeeEEEe-cccccCCcc
Confidence            999999888776 566666543

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.22  E-value=9.7e-11  Score=115.13  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=86.3

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEece-----------------EECCCCEEC
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGS-----------------YIWDNVIIE  389 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s-----------------~I~~~v~Ig  389 (616)
                      +..+++++.|+++|.| .++.||.+|.|++++.|.+++||++|.|++++.|.+.                 .+++....+
T Consensus        19 ~~~IG~~~~Ig~~a~I-~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~   97 (204)
T TIGR03308        19 ESKLGRYTEIGERTRL-REVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD   97 (204)
T ss_pred             ccEeCCCcEECCCcEE-eCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence            3678888888888888 4788999999999999999999999999999998632                 111111110


Q ss_pred             C----CcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          390 D----GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       390 ~----~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      .    .-...+++||++|+||.+++|.+|++||++++|+++++    |++++++...|
T Consensus        98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~P  155 (204)
T TIGR03308        98 ADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVP  155 (204)
T ss_pred             ccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecC
Confidence            0    11236788899999999999999999999999999998    66777776654

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.22  E-value=1.2e-10  Score=102.08  Aligned_cols=79  Identities=25%  Similarity=0.375  Sum_probs=72.2

Q ss_pred             cEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC
Q 007143          334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP  413 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~  413 (616)
                      +.|++++.| .+++||++|.|+ ++.|.+|+||++|.|+++|.|.+|+|++++.|+.+|.+.+++|++++.|++++.|.+
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~   79 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence            356777778 578999999999 999999999999999999999999999999999999999999999999999988886


Q ss_pred             C
Q 007143          414 G  414 (616)
Q Consensus       414 g  414 (616)
                      .
T Consensus        80 ~   80 (104)
T cd04651          80 D   80 (104)
T ss_pred             C
Confidence            5

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.20  E-value=1e-10  Score=128.35  Aligned_cols=84  Identities=19%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CcEECCCCEECCCCEEeceEECCCC----------EECCCCEEeceEECCCCEECCCcEEec--------eEECCCcEEC
Q 007143          345 FTVIGYGTKIGSNSKISDSVIGEGC----------TIGSNVLIEGSYIWDNVIIEDGCELRH--------VIVCDGVIMK  406 (616)
Q Consensus       345 ~~~Ig~~~~Ig~~~~I~~s~IG~~~----------~Ig~~~~I~~s~I~~~v~Ig~~~~I~~--------siIg~~v~Ig  406 (616)
                      ++.||+++.|+++++|.+|+||++|          +||+++.|.+|+|+++|.||.++.+.+        ++||++|+||
T Consensus       298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig  377 (430)
T PRK14359        298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG  377 (430)
T ss_pred             CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence            4555666666666666555555555          667777788889999999999887742        4666666666


Q ss_pred             CCCEECCCCEECCCcEECCCCE
Q 007143          407 AGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       407 ~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      .++.|.+++.||++++||+|++
T Consensus       378 ~~~~i~~~~~ig~~~~i~~g~~  399 (430)
T PRK14359        378 SDTQLVAPVNIEDNVLIAAGST  399 (430)
T ss_pred             CCCEEeCCcEECCCCEECCCCE
Confidence            6666665555555555555554

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.19  E-value=2.4e-10  Score=111.43  Aligned_cols=114  Identities=15%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             ecceEEcCCcEECCCCEE----CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceE--------ECCCCEEC
Q 007143          325 RRGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY--------IWDNVIIE  389 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~--------I~~~v~Ig  389 (616)
                      ..++.+++++.++.+|++    .+.+.||+++.|++++.|.   +++||++|.|+.+|.|.+..        .+.+..+.
T Consensus        41 ~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~  120 (192)
T PRK09677         41 DGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLP  120 (192)
T ss_pred             CCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccC
Confidence            467888999999999888    3578899999999999985   68899999999999986421        22222221


Q ss_pred             ---CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEEC----CCCEEccc
Q 007143          390 ---DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP----AHSKVSLL  438 (616)
Q Consensus       390 ---~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~----~~~~v~~~  438 (616)
                         .......++||++|+||.++.|.+|++||++|+||++++|.    +++++...
T Consensus       121 ~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~  176 (192)
T PRK09677        121 PDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGN  176 (192)
T ss_pred             hhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEec
Confidence               12234567788888888888888888888888888887754    45555443

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.19  E-value=8.6e-11  Score=130.62  Aligned_cols=109  Identities=20%  Similarity=0.213  Sum_probs=84.9

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEEC
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg  400 (616)
                      ....+++.+++++.|+++|.| .+++||++|.|+++++|.+++||++|.||+++.|. ++.|++++.|+.++.|.+++|+
T Consensus       283 ~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~  361 (481)
T PRK14358        283 VLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD  361 (481)
T ss_pred             cEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence            344445556666666666666 45678888888888888888888888888888885 7888888888888888888888


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH  432 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~  432 (616)
                      +++.||..+.++ +++||++|.||+++++..+
T Consensus       362 ~~~~ig~~~~~~-~~~ig~~~~ig~~~~i~~~  392 (481)
T PRK14358        362 AGVKAGHLAYLG-DVTIGAETNVGAGTIVANF  392 (481)
T ss_pred             CCcccCceEEEC-CeEEcCCceEcCCEEEeCC
Confidence            888888887776 5888888888888877653

>PRK10502 putative acyl transferase; Provisional

Probab=99.18  E-value=1.7e-10  Score=111.60  Aligned_cols=111  Identities=18%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEEeceEEC
Q 007143          327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELRHVIVC  400 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I~~siIg  400 (616)
                      ...+++++.|++++.|..  ++.||++|.|++++.|.   .++||++|.|+++|.|... ......  .........+||
T Consensus        51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~--~~~~~~~~i~Ig  128 (182)
T PRK10502         51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDP--HFDLNTAPIVIG  128 (182)
T ss_pred             ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCC--CcccccCCEEEc
Confidence            456788888888887754  57888888888888885   5778888888887776321 110000  001122456778


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      ++|+||.++.|.+|+.||++++||++++    +++++++...|
T Consensus       129 d~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~P  171 (182)
T PRK10502        129 EGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNP  171 (182)
T ss_pred             CCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCc
Confidence            8888888888887888888877777776    45666655544

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.18  E-value=2.7e-10  Score=99.23  Aligned_cols=86  Identities=21%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCc
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGV  403 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v  403 (616)
                      .+++++++++.+++++.|.++++||+++.|++++.|. +++||++|.||.  .|.+++||+++.++.++.|.+++||+++
T Consensus         9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v   86 (101)
T cd05635           9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWC   86 (101)
T ss_pred             CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCC
Confidence            4578888888888888888888888888888888886 688888888865  5778888888888888887777777777


Q ss_pred             EECCCCEEC
Q 007143          404 IMKAGAVLK  412 (616)
Q Consensus       404 ~Ig~~~~I~  412 (616)
                      .||+++.+.
T Consensus        87 ~ig~~~~~~   95 (101)
T cd05635          87 NLGAGTNNS   95 (101)
T ss_pred             EECCCceec
Confidence            777776654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.17  E-value=1.2e-10  Score=128.83  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=47.6

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I  394 (616)
                      ..+++.+++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. ++.|++++.||+++.|
T Consensus       280 i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i  350 (456)
T PRK09451        280 IEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM  350 (456)
T ss_pred             EecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence            3456677777777777777 36777777777777777777777777777777665 5556666555555444

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.17  E-value=2.1e-10  Score=116.30  Aligned_cols=103  Identities=20%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEe-ceE-ECCCCE---ECCCCEEe-ceEECCCCEECCCcEE-ec----eEE
Q 007143          331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSV-IGEGCT---IGSNVLIE-GSYIWDNVIIEDGCEL-RH----VIV  399 (616)
Q Consensus       331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~-IG~~~~---Ig~~~~I~-~s~I~~~v~Ig~~~~I-~~----siI  399 (616)
                      ..++.|++.++|..++.||++|.|.++++|. ++. +|.+|.   |..+++|+ +|.|++++.|  ++++ .+    +.|
T Consensus       176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~V~I  253 (341)
T TIGR03536       176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIVISV  253 (341)
T ss_pred             cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCceeEEE
Confidence            3445555555555555555555555555442 232 344444   33333331 2333333333  1111 12    677


Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      |++|+||.++.|  |..||++|+||+|++|.++|+|..
T Consensus       254 Ge~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~  289 (341)
T TIGR03536       254 GEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV  289 (341)
T ss_pred             CCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence            888888888888  788888888888888888888876

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.17  E-value=2.3e-10  Score=127.45  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCC----------------CEECCCCEEe-ceEECCCCEECCCCEEeceEECCC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYG----------------TKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDN  385 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~----------------~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~  385 (616)
                      ...++++++.++.|+++|.|. +++||++                +.||+++.|. +++||++|.||.++.+.+++|+++
T Consensus       285 ~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~  363 (482)
T PRK14352        285 QLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG  363 (482)
T ss_pred             EEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC
Confidence            334556666666666666653 3344443                4444444442 444444444444444444555555


Q ss_pred             CEECCCcEEeceEECCCcEECCCCEECC-------CCEECCCcEECCCCEECCCC
Q 007143          386 VIIEDGCELRHVIVCDGVIMKAGAVLKP-------GVVLSFKVVIGERFVVPAHS  433 (616)
Q Consensus       386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~-------g~vIg~~v~Ig~~~~v~~~~  433 (616)
                      +.|+..+.+.+++||++|.||.++++..       +++||++|.||.+++|.++.
T Consensus       364 ~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~  418 (482)
T PRK14352        364 TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPV  418 (482)
T ss_pred             cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCC
Confidence            5555555555566666666666654431       24444444444444433333

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.17  E-value=4e-10  Score=109.95  Aligned_cols=97  Identities=12%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             ecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcEEec
Q 007143          325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~  396 (616)
                      .++++++.++.|+++|+|.++   +.||.+|.|+++|+|+     +++||++|.||+++.|++++|+++|.||.+++|  
T Consensus        26 ~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V--  103 (196)
T PRK13627         26 IGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVI--  103 (196)
T ss_pred             ECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCcc--
Confidence            456778888888888877553   5788888898888884     588999999999999999999999988887666  


Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGER  426 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~  426 (616)
                         ..++.||+++.|+.|++|-.++.+.++
T Consensus       104 ---~~g~~IG~~s~Vgags~V~~~~~ip~~  130 (196)
T PRK13627        104 ---MDGAVIGEESIVAAMSFVKAGFQGEKR  130 (196)
T ss_pred             ---CCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence               444555554444444444444444333

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.16  E-value=4.3e-10  Score=108.72  Aligned_cols=93  Identities=31%  Similarity=0.446  Sum_probs=56.9

Q ss_pred             CEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEE
Q 007143          340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       340 ~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      +.+.+++.||.++.|+++     ++|+.++.||++|.|. +++|+.++.||++|.| .+++++.++.||++|+|+.+++|
T Consensus        91 ~~i~~~~~ig~~~~i~~~-----~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v  165 (197)
T cd03360          91 AVVSPSAVIGEGCVIMAG-----AVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI  165 (197)
T ss_pred             eEECCCCEECCCCEEcCC-----CEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            333334444444444433     3556677777776663 6666666666666666 35666666666666666666666


Q ss_pred             CCCcEECCCCEECCCCEEcc
Q 007143          418 SFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       418 g~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .++++||++++|+++++|..
T Consensus       166 ~~~~~ig~~~~v~~~~~v~~  185 (197)
T cd03360         166 IQGVTIGAGAIIGAGAVVTK  185 (197)
T ss_pred             cCCCEECCCCEECCCCEEcC
Confidence            66666666666666666654

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.16  E-value=1.1e-09  Score=108.89  Aligned_cols=208  Identities=16%  Similarity=0.137  Sum_probs=121.1

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      +.|||||+|.++||.      +|+|+|++|+|||+|+++.+..++ +++|+|.+.  .+.+.+++.+.      +..+.+
T Consensus         2 ~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~------~~~~~~   67 (223)
T cd02513           2 ILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY------GAEVPF   67 (223)
T ss_pred             eEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh------CCCcee
Confidence            579999999999994      599999999999999999999987 788877653  35566555431      121222


Q ss_pred             EeC----CCccCHHHHHHHHHhc-ccc---cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          108 IES----HNIISAGDALRLIYEQ-NVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       108 i~~----~~~~~~gdalr~~~~~-~~i---~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                      +..    ....+..++++..... ...   .+.|+++.||+  +....+..+++.|+...     +..++.+.+....  
T Consensus        68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~-----~~~~~~~~~~~~~--  140 (223)
T cd02513          68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEG-----ADSVFSVTEFHRF--  140 (223)
T ss_pred             eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCC-----CCEEEEEEecCcC--
Confidence            222    1223556666644321 100   12399999999  77789999999987642     2333333333221  


Q ss_pred             CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH
Q 007143          178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL  257 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l  257 (616)
                         ..++    . ..+.+....+.+.+.....  ....+ .           ....++++|+++.+.+.-..        
T Consensus       141 ---~~~~----~-~~~~~~~~~~~~~~~~~~~--~q~~~-~-----------~~~~n~~~y~~~~~~~~~~~--------  190 (223)
T cd02513         141 ---PWRA----L-GLDDNGLEPVNYPEDKRTR--RQDLP-P-----------AYHENGAIYIAKREALLESN--------  190 (223)
T ss_pred             ---cHHh----e-eeccCCceeccCcccccCC--cCCCh-h-----------HeeECCEEEEEEHHHHHhcC--------
Confidence               1111    1 1111111122221110000  00000 0           11245679998877441110        


Q ss_pred             HHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143          258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       258 r~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                                 ...|.+++.+++++....+|++++++..+.
T Consensus       191 -----------~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae  220 (223)
T cd02513         191 -----------SFFGGKTGPYEMPRERSIDIDTEEDFELAE  220 (223)
T ss_pred             -----------CccCCCeEEEEeCccceeCCCCHHHHHHHH
Confidence                       114788888888866789999999987663

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.15  E-value=2.5e-10  Score=94.32  Aligned_cols=71  Identities=27%  Similarity=0.428  Sum_probs=39.4

Q ss_pred             ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          365 IGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       365 IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      ||++|.|+++|.|.+++|++++.|+++|+|.+++|++++.|+++++|. +++|+++++|++++.++++++++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~v~   72 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLIS   72 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCCEEe
Confidence            455555555555555555555555555555555555555555555554 45555555555555555555544

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.14  E-value=2.8e-09  Score=105.85  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=80.8

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |||||+|.|+||+.   ..||+|+|++|+|||+|+++.+..+ ++++|+|++++. .+.+..++...       ..+.++
T Consensus         2 aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-------~~~~~~   71 (217)
T TIGR00453         2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-------AVPKIV   71 (217)
T ss_pred             EEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-------CcEEEe
Confidence            79999999999974   4699999999999999999999998 899999999865 35565555321       123344


Q ss_pred             eCCCccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ....  +...+++...  ..+ ..+ +|++.||+  +....+..+++.+++
T Consensus        72 ~~~~--~~~~sl~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~  118 (217)
T TIGR00453        72 AGGD--TRQDSVRNGL--KALKDAEWVLVHDAARPFVPKELLDRLLEALRK  118 (217)
T ss_pred             CCCc--hHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence            3222  2345555332  223 344 89999998  666789999998765

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.14  E-value=2.1e-10  Score=126.47  Aligned_cols=63  Identities=27%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143          347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA  409 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~  409 (616)
                      +|++++.|++++.|+ +++||++|.||+++.+.+++|++++.++..+.+.+++||++|.||+++
T Consensus       308 ii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~  371 (448)
T PRK14357        308 VIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGT  371 (448)
T ss_pred             EEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCc
Confidence            344555556666664 477778888887777777777776666655555555555555555443

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=3.6e-10  Score=120.67  Aligned_cols=96  Identities=34%  Similarity=0.407  Sum_probs=82.5

Q ss_pred             ECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCC
Q 007143          336 QSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG  414 (616)
Q Consensus       336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g  414 (616)
                      +.. +.|.++++||++|.|++++.|+ .++||++|.||.++.|.+|+||++++|++++.|.+|+|+.+|.||++.     
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-----  326 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-----  326 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-----
Confidence            344 7788999999999999999996 699999999999999999999999999999999999999999999933     


Q ss_pred             CEECCCcEECCCCEECCCCEEcccc
Q 007143          415 VVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       415 ~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                       .|++ +.+|.++.+.++++++...
T Consensus       327 -~i~d-~~~g~~~~i~~g~~~~~~~  349 (358)
T COG1208         327 -IIGD-VVIGINSEILPGVVVGPGS  349 (358)
T ss_pred             -eecc-eEecCceEEcCceEeCCCc
Confidence             1777 7777777777777776543

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.13  E-value=4.9e-10  Score=106.28  Aligned_cols=99  Identities=26%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM  405 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~I  405 (616)
                      .+++..++.|++++.|+++++|+.+    .+++|+ +++||++|.|+++|+|..+...        .....++||++|+|
T Consensus        55 ~~~~~~~~~I~~~~~Ig~~~~i~~~----~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~--------~~~~~~~Ig~~v~I  122 (162)
T TIGR01172        55 FIRVLTGVDIHPGARIGRGVFIDHG----TGVVIGETAVIGDDVTIYHGVTLGGTGKE--------KGKRHPTVGEGVMI  122 (162)
T ss_pred             HHheeeCeEeCCCCEECCCeEECCC----CeEEECCCCEECCCCEEcCCCEECCCccc--------cCCcCCEECCCcEE
Confidence            3445556666666666666666543    122332 2456666666666655433110        11334567777777


Q ss_pred             CCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          406 KAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       406 g~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      |.+++|..+++||++|+||++++|    |+++++..
T Consensus       123 g~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G  158 (162)
T TIGR01172       123 GAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVG  158 (162)
T ss_pred             cCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEe
Confidence            777777777777777777777764    55555544

Cysteine biosynthesis

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.12  E-value=7e-10  Score=108.25  Aligned_cols=104  Identities=20%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEEC
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMK  406 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig  406 (616)
                      ++++++.|++++.|++++.|++++.||++|.|. +++|+.+|.||.+|.|. ++.|..+++|+++|.|     +.++.|.
T Consensus        95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----g~~~~v~  169 (201)
T TIGR03570        95 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFI-----GAGATII  169 (201)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEE-----CCCCEEe
Confidence            344444444444444444444444444444442 44444444444444442 3333444444444433     5556666


Q ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          407 AGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       407 ~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      .++.|+++|+|+.+++|...  +++++++...|
T Consensus       170 ~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~p  200 (201)
T TIGR03570       170 QGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVP  200 (201)
T ss_pred             CCCEECCCCEECCCCEECCc--CCCCCEEEecc
Confidence            66666666666666666554  66776665543

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.12  E-value=5.1e-10  Score=112.06  Aligned_cols=90  Identities=26%  Similarity=0.351  Sum_probs=69.9

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC  392 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~  392 (616)
                      ...++++++.++.|++++.|++++.||++|.|++++.|. +++||++|+||.+++|.+         ++|+++|.||.++
T Consensus        94 ~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gs  173 (231)
T TIGR03532        94 IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANA  173 (231)
T ss_pred             EEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCC
Confidence            455788999999999999999999999999999999995 899999999999999974         6777777777776


Q ss_pred             EE-eceEECCCcEECCCCEEC
Q 007143          393 EL-RHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       393 ~I-~~siIg~~v~Ig~~~~I~  412 (616)
                      .| .++.||++++|+++++|.
T Consensus       174 vI~~g~~Ig~~~~IgagsvV~  194 (231)
T TIGR03532       174 VILEGVRVGKGAVVAAGAIVT  194 (231)
T ss_pred             EEcCCCEECCCCEECCCCEEc
Confidence            66 244444444444444443

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.12  E-value=4.4e-10  Score=124.36  Aligned_cols=61  Identities=25%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143          347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA  407 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~  407 (616)
                      +||.+|.|++++.|. +++||++|+|+.++.|.++.|++++.++..+.+.+++||+++.||.
T Consensus       318 ~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~  379 (458)
T PRK14354        318 KVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGC  379 (458)
T ss_pred             EECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcC
Confidence            344444444554443 4555555555555555555555555555444444455555444443

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.12  E-value=5.3e-10  Score=112.87  Aligned_cols=103  Identities=18%  Similarity=0.266  Sum_probs=76.3

Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEe-ce-EECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eE
Q 007143          331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DS-VIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH---------VI  398 (616)
Q Consensus       331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s-~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~---------si  398 (616)
                      ..++.|.+..++.-+++||++|.|.+++.|. ++ +||+. +|  +++| ++++|++++.|+.++.|.+         +.
T Consensus       151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~  227 (319)
T TIGR03535       151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS  227 (319)
T ss_pred             CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence            3456666666666677777777777777664 55 56664 55  3555 3577778888888877543         78


Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ||++|+||.++.|  |..||++|+||+|++|.++|+|...
T Consensus       228 IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~~~  265 (319)
T TIGR03535       228 IGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVTLW  265 (319)
T ss_pred             ECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEEEe
Confidence            8888999999888  7889999999999999999988753

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.10  E-value=7.3e-10  Score=108.43  Aligned_cols=110  Identities=21%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             EcCCcEECCCCEE--CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCc-EEeceEECCC
Q 007143          330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGC-ELRHVIVCDG  402 (616)
Q Consensus       330 ~~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~-~I~~siIg~~  402 (616)
                      +++++.|.+.+.+  +.++.||+++.|+.+++|.   ++.||++|.||++|.|... .-.+...-..+. .....+||++
T Consensus        58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~  137 (203)
T PRK09527         58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN  137 (203)
T ss_pred             cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence            5666667666665  4678888888888888883   5789999999999998632 000000000111 1234667777


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      |+||.+++|.+|++||++++||+|++|    |+++++...|
T Consensus       138 v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~P  178 (203)
T PRK09527        138 VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVP  178 (203)
T ss_pred             cEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeC
Confidence            777777777777777777777777764    4455554433

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.09  E-value=1.4e-10  Score=103.11  Aligned_cols=98  Identities=22%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             CcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEeceEECCCcEECC
Q 007143          345 FTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDGCELRHVIVCDGVIMKA  407 (616)
Q Consensus       345 ~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~  407 (616)
                      |.++...+.|.+++.|+    ++.||+.|.++.+|.|.             +..||+++.|+++|++..+.||+.+++|.
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk  112 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK  112 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence            33344444444455442    56677777777777775             46799999999999999999999999999


Q ss_pred             CCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          408 GAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       408 ~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                      +++|+++|+|.+.|+|.+++++|+.+.++.+...+
T Consensus       113 naviGrrCVlkdCc~ild~tVlPpet~vppy~~~~  147 (184)
T KOG3121|consen  113 NAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG  147 (184)
T ss_pred             ceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence            99999999999999999999999999998776444

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.09  E-value=6e-10  Score=99.67  Aligned_cols=89  Identities=34%  Similarity=0.392  Sum_probs=60.2

Q ss_pred             CCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEE----------CCCcEECCCCEECCCCE
Q 007143          349 GYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIV----------CDGVIMKAGAVLKPGVV  416 (616)
Q Consensus       349 g~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI----------g~~v~Ig~~~~I~~g~v  416 (616)
                      |+++.|++++.|. +++||++|.|++++.| .+++|++++.|++++.+.++.+          -.+++||++++|+.+++
T Consensus         2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~   81 (119)
T cd03358           2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT   81 (119)
T ss_pred             CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence            3444444444443 4566666666666666 3566777777777776655432          24677888888888888


Q ss_pred             ECCCcEECCCCEECCCCEEcc
Q 007143          417 LSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       417 Ig~~v~Ig~~~~v~~~~~v~~  437 (616)
                      |.++++|++++.|++++++..
T Consensus        82 v~~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          82 ILPGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             EeCCcEECCCCEEccCCEEeC
Confidence            888888888888888888764

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.08  E-value=1.5e-09  Score=99.24  Aligned_cols=16  Identities=25%  Similarity=0.630  Sum_probs=8.2

Q ss_pred             eEECCCCEECCCCEEe
Q 007143          363 SVIGEGCTIGSNVLIE  378 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~  378 (616)
                      ++||++|.||++|.|.
T Consensus        48 a~Ighd~~IG~~~~I~   63 (147)
T cd04649          48 VIVGKGSDVGGGASIM   63 (147)
T ss_pred             EEECCCCEECCCCEEE
Confidence            4455555555555554

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.07  E-value=5.4e-10  Score=110.61  Aligned_cols=106  Identities=19%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             CCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEEC
Q 007143          332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVC  400 (616)
Q Consensus       332 ~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg  400 (616)
                      .++.|.|++++...++||+|++|.+++.|. ++.++.+|+|.-+.+++ ...||.||.||.++.|.         ..+|+
T Consensus       107 ~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Ig  186 (271)
T COG2171         107 EGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIG  186 (271)
T ss_pred             CceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEEC
Confidence            446777777777777777777777777774 77777777777777775 35677777777777774         37899


Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +||.||+++.+..|+.||+||+|++|++|..+|.+..
T Consensus       187 dncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~  223 (271)
T COG2171         187 DNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD  223 (271)
T ss_pred             CccEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence            9999999998888999999999999999999888865

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.05  E-value=1.6e-09  Score=109.92  Aligned_cols=105  Identities=14%  Similarity=0.292  Sum_probs=88.7

Q ss_pred             EECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCE-ECCCCE---Ee-ceEECCCCEECCCcEEeceEECCC----cE
Q 007143          335 EQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCT-IGSNVL---IE-GSYIWDNVIIEDGCELRHVIVCDG----VI  404 (616)
Q Consensus       335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~-Ig~~~~---I~-~s~I~~~v~Ig~~~~I~~siIg~~----v~  404 (616)
                      .+..+++|++.+.|..++.||++++|. .++|+.++. +|.++.   |. +++|+++|.||.+|.| .+.+..+    +.
T Consensus       174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~  252 (341)
T TIGR03536       174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVIS  252 (341)
T ss_pred             EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEE
Confidence            677788999899999999999999885 688888888 787766   53 7889999999999999 5566667    89


Q ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       405 Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                      ||++|.|+.|+.|  ++.||++++|++|+.|...+.+.
T Consensus       253 IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       253 VGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             ECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence            9999999999998  89999999999999998766554

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PLN02694 serine O-acetyltransferase

Probab=99.04  E-value=7.9e-10  Score=112.33  Aligned_cols=74  Identities=32%  Similarity=0.391  Sum_probs=48.3

Q ss_pred             eEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcc
Q 007143          363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSL  437 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~  437 (616)
                      ++||++|.||++|.|.+ ++++. +  +..+..++++||++|+||.+++|..+++||++|+||+|++    ||+++++..
T Consensus       181 VVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~v~G  257 (294)
T PLN02694        181 VVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVG  257 (294)
T ss_pred             eEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcCCCCcEEEc
Confidence            45555555555555432 22222 1  3345567788888888888888887888888888888887    456666665


Q ss_pred             cc
Q 007143          438 LQ  439 (616)
Q Consensus       438 ~~  439 (616)
                      .|
T Consensus       258 ~P  259 (294)
T PLN02694        258 NP  259 (294)
T ss_pred             cC
Confidence            44

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.04  E-value=1.1e-09  Score=105.43  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |.|||||+|.++||++     ||+|+|++|+|||+|+++.+... +.+|+|++++....   +. .        ..+.++
T Consensus         1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~--------~~~~~v   62 (181)
T cd02503           1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER---YA-L--------LGVPVI   62 (181)
T ss_pred             CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h--------cCCcEe
Confidence            4689999999999986     99999999999999999999988 89999999876544   11 1        123344


Q ss_pred             eCC-CccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHH
Q 007143          109 ESH-NIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEH  153 (616)
Q Consensus       109 ~~~-~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h  153 (616)
                      ..+ ...|...+++....  .+..+ ++++.||+  +....+..+++.+
T Consensus        63 ~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          63 PDEPPGKGPLAGILAALR--AAPADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             eCCCCCCCCHHHHHHHHH--hcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            433 24566677765432  23334 99999999  5556788887765

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.03  E-value=2.4e-09  Score=102.62  Aligned_cols=117  Identities=21%  Similarity=0.335  Sum_probs=91.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ..+-+||||+|.++||+.     +|.|+|+.|+||+.++++.+.++++++++|++++. .+........        ..+
T Consensus         4 ~~v~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------~~~   70 (199)
T COG2068           4 STVAAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------LGV   70 (199)
T ss_pred             cceEEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc--------CCe
Confidence            457899999999999996     99999999999999999999999999999999986 3333333322        346


Q ss_pred             EEEeCCCc-cCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          106 KTIESHNI-ISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       106 ~~i~~~~~-~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      +++.++.+ .|++..++....+..-.++ ++++.||+  +...++..+++.++.+
T Consensus        71 ~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~  125 (199)
T COG2068          71 TVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR  125 (199)
T ss_pred             EEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence            66666554 6888888865543222234 99999999  8888999999887764

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.01  E-value=3.2e-09  Score=102.57  Aligned_cols=95  Identities=26%  Similarity=0.356  Sum_probs=53.2

Q ss_pred             CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEE
Q 007143          343 GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       343 ~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      +.++.||+++.|+.+++|.   ...||++|.|+++|.|... ...+......+..+ ..+.||++|+||.+|+|.+|++|
T Consensus        71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I  150 (183)
T PRK10092         71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  150 (183)
T ss_pred             cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence            4445555555555555443   2389999999999998521 11122222222222 34555667777777766666666


Q ss_pred             CCCcEECCCCE----ECCCCEEcc
Q 007143          418 SFKVVIGERFV----VPAHSKVSL  437 (616)
Q Consensus       418 g~~v~Ig~~~~----v~~~~~v~~  437 (616)
                      |++++||++++    |++++++..
T Consensus       151 G~~~vIgagsvV~~di~~~~i~~G  174 (183)
T PRK10092        151 GDNVVVASGAVVTKDVPDNVVVGG  174 (183)
T ss_pred             CCCCEECCCCEEccccCCCcEEEe
Confidence            66666666665    344444443

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.01  E-value=4.3e-09  Score=91.66  Aligned_cols=82  Identities=18%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCc
Q 007143          344 SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV  421 (616)
Q Consensus       344 ~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v  421 (616)
                      +.++|++++.|++++.|. +++||++|.||+++.|. +++|+.++.|+.  .|.+++|.+++.|+.++.|+ +++||+++
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v   86 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC   86 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence            467888888888888884 68899999999999886 588888888864  57788888888888777776 56666666


Q ss_pred             EECCCCE
Q 007143          422 VIGERFV  428 (616)
Q Consensus       422 ~Ig~~~~  428 (616)
                      .||+++.
T Consensus        87 ~ig~~~~   93 (101)
T cd05635          87 NLGAGTN   93 (101)
T ss_pred             EECCCce
Confidence            6666654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.01  E-value=2.6e-08  Score=106.74  Aligned_cols=116  Identities=14%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +.+.+||||+|.|+||..   ..||+|+|++|+|||+|+++.+..++ +++|+|++++....+.+.+....     . .+
T Consensus         4 m~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~-----~-~v   74 (378)
T PRK09382          4 SDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-----K-FV   74 (378)
T ss_pred             CcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-----C-eE
Confidence            347899999999999953   57999999999999999999999987 79999999876444333222110     1 13


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      .++...  .+..++++...  ..+..+ +|+..||.  +....+..+++..+.
T Consensus        75 ~~v~gG--~~r~~SV~~gL--~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~  123 (378)
T PRK09382         75 TLVTGG--ATRQESVRNAL--EALDSEYVLIHDAARPFVPKELIDRLIEALDK  123 (378)
T ss_pred             EEeCCC--chHHHHHHHHH--HhcCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence            444322  23445555332  233445 77788886  555677888876543

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=98.98  E-value=5.8e-09  Score=101.41  Aligned_cols=114  Identities=17%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHH---HHHHHhcCCCCCCCcEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV---IDYLENSEWFSQPNFTV  105 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i---~~~l~~~~~~~~~~~~i  105 (616)
                      +.+||||+|.++||+.     ||.|++++|+|||+|+++.+...++.+++|++++..+.+   .++...       ...+
T Consensus         1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~-------~~~~   68 (190)
T TIGR03202         1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA-------DERI   68 (190)
T ss_pred             CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc-------CCCe
Confidence            3589999999999986     899999999999999999888889999999998764432   222111       0123


Q ss_pred             EEEeCC-CccCHHHHHHHHHhc-ccccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143          106 KTIESH-NIISAGDALRLIYEQ-NVIHGD-FVLISGDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       106 ~~i~~~-~~~~~gdalr~~~~~-~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~  154 (616)
                      .++... ...|.+.+++..... ..-..+ +++++||+  +....+..+++..+
T Consensus        69 ~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~  122 (190)
T TIGR03202        69 MLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAK  122 (190)
T ss_pred             EEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHh
Confidence            444322 234666666654322 111234 89999999  55567778877654

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=98.96  E-value=2.8e-09  Score=103.55  Aligned_cols=123  Identities=19%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------
Q 007143          320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG-------  379 (616)
Q Consensus       320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~-------  379 (616)
                      +|....+++-++.++.|++.++|.+.+.||.+++|.+++.|+             ..+||++|.|.+.++|+.       
T Consensus        26 pf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g  105 (260)
T COG1043          26 PFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG  105 (260)
T ss_pred             ceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCce
Confidence            566677777777778888888888888888888888888884             268999999999999972       


Q ss_pred             -eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143          380 -SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT  442 (616)
Q Consensus       380 -s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~  442 (616)
                       +.||+++.+-.+++| .+|+||++|++..++.+.-.+.||+.+.||-.+-|...++|+.+..++
T Consensus       106 ~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiG  170 (260)
T COG1043         106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIG  170 (260)
T ss_pred             eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheec
Confidence             456666555555555 346666666666666666666666666666655555555555544443

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=98.96  E-value=6.1e-09  Score=101.53  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.|.+||||+|.++||+    ..||+|+|++|+|||+|+++.+. .++++|+|+++.+.+.+.    ..      ++.  
T Consensus         2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~~------~~~--   64 (193)
T PRK00317          2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARYA----AF------GLP--   64 (193)
T ss_pred             CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHHH----hc------CCc--
Confidence            35889999999999995    24999999999999999999998 789999999876543322    10      122  


Q ss_pred             EEeCCC--ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          107 TIESHN--IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       107 ~i~~~~--~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ++....  ..|...+++....  ....+ ++++.||+  +....+..+++.+.+
T Consensus        65 ~v~~~~~~~~g~~~~i~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  116 (193)
T PRK00317         65 VIPDSLADFPGPLAGILAGLK--QARTEWVLVVPCDTPFIPPDLVARLAQAAGK  116 (193)
T ss_pred             EEeCCCCCCCCCHHHHHHHHH--hcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence            333222  2455556664332  23444 89999999  455678888876543

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.95  E-value=6.1e-09  Score=101.95  Aligned_cols=76  Identities=25%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   +..||++|.|+++|.|..             ......++||++|+|+.+++|..+++||+
T Consensus        75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~  154 (203)
T PRK09527         75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  154 (203)
T ss_pred             CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence            56778888888888773   478999999999998852             23445699999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|..
T Consensus       155 ~~vIgagsvV~k  166 (203)
T PRK09527        155 NSVIGAGSVVTK  166 (203)
T ss_pred             CCEECCCCEEcc
Confidence            999999999986

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.95  E-value=4.9e-09  Score=113.20  Aligned_cols=91  Identities=19%  Similarity=0.369  Sum_probs=70.7

Q ss_pred             EECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCC
Q 007143          341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       341 ~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      .+...+.+...+.|++++.|.++.||++|.|+.  .+.+|+|+++|+||++|+|.+|+|+++|.||+++.|. +|+|+++
T Consensus       272 ~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~-~~ii~~~  348 (380)
T PRK05293        272 RIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIE-RAIIGEN  348 (380)
T ss_pred             ceecCCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEe-EEEECCC
Confidence            343444455566666667777788888888863  5778889999999999999999999999999998886 5888888


Q ss_pred             cEECCCCEECCCCE
Q 007143          421 VVIGERFVVPAHSK  434 (616)
Q Consensus       421 v~Ig~~~~v~~~~~  434 (616)
                      ++|++++.+.+++.
T Consensus       349 ~~i~~~~~i~~~~~  362 (380)
T PRK05293        349 AVIGDGVIIGGGKE  362 (380)
T ss_pred             CEECCCCEEcCCCc
Confidence            88888888877643

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.93  E-value=1.1e-08  Score=97.78  Aligned_cols=95  Identities=28%  Similarity=0.332  Sum_probs=54.6

Q ss_pred             CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceE-ECCCCEECCCcE-EeceEECCCcEECCCCEECCCCEE
Q 007143          343 GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY-IWDNVIIEDGCE-LRHVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       343 ~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~-I~~~v~Ig~~~~-I~~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      +.++.||+++.|++++.|.   +.+||++|.|+++|.|.... -.+......+.. ...+.||++|+||.+++|.+|++|
T Consensus        60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~I  139 (169)
T cd03357          60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTI  139 (169)
T ss_pred             CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEE
Confidence            3456666666666666663   56889999999888885321 000000001111 234555777777777777666666


Q ss_pred             CCCcEECCCCE----ECCCCEEcc
Q 007143          418 SFKVVIGERFV----VPAHSKVSL  437 (616)
Q Consensus       418 g~~v~Ig~~~~----v~~~~~v~~  437 (616)
                      |++|+||++++    ||+++++..
T Consensus       140 g~~~~VgagavV~~~vp~~~vv~G  163 (169)
T cd03357         140 GDNSVIGAGSVVTKDIPANVVAAG  163 (169)
T ss_pred             CCCCEECCCCEEccccCCCcEEEc
Confidence            66666666666    344444443

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.92  E-value=7.1e-09  Score=84.92  Aligned_cols=75  Identities=35%  Similarity=0.438  Sum_probs=45.0

Q ss_pred             EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      .||+++.|++++.|. +++||++|.|+++|.|.+.....        ......|+++++|+.++.|.+++.|++++.|++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~   73 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA   73 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence            455666666666665 37777777777777776553321        223355566666666666666666666666665


Q ss_pred             CCEE
Q 007143          426 RFVV  429 (616)
Q Consensus       426 ~~~v  429 (616)
                      +++|
T Consensus        74 ~s~v   77 (78)
T cd00208          74 GAVV   77 (78)
T ss_pred             CcEe
Confidence            5544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.92  E-value=1.1e-08  Score=89.88  Aligned_cols=83  Identities=33%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             ECCCCEECCCCEEe---ceEECCCCEECCCCEEece---EECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCc
Q 007143          348 IGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS---YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV  421 (616)
Q Consensus       348 Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s---~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v  421 (616)
                      ||+++.|++++.|.   ++.||++|.|+++|+|.++   .++.+..+...+....++||++++|+.++.|.++++|++++
T Consensus         4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~   83 (109)
T cd04647           4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGA   83 (109)
T ss_pred             ECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCC
Confidence            34444444444442   4566666666666666543   22223333333344555556666666665555555555555


Q ss_pred             EECCCCEEC
Q 007143          422 VIGERFVVP  430 (616)
Q Consensus       422 ~Ig~~~~v~  430 (616)
                      .|+++++|.
T Consensus        84 ~i~~~~~v~   92 (109)
T cd04647          84 VVGAGSVVT   92 (109)
T ss_pred             EECCCCEEe
Confidence            555555443

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=98.92  E-value=1.3e-08  Score=98.30  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      +.+||||+|.++||+.    .||+|+|++|+|||+|+++.+.. ++++|+|++......   +... .+    +  +.++
T Consensus         1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-~~----~--~~~i   65 (186)
T TIGR02665         1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA-GF----G--LPVV   65 (186)
T ss_pred             CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-cC----C--CcEE
Confidence            4589999999999972    49999999999999999999986 589998888654322   2211 11    1  2333


Q ss_pred             eC--CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ES--HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~--~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ..  +...|.+.+++....  .+..+ ++++.||+  +....+..+++.+..
T Consensus        66 ~~~~~~~~g~~~si~~al~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  115 (186)
T TIGR02665        66 PDALADFPGPLAGILAGLR--WAGTDWVLTVPCDTPFLPEDLVARLAAALEA  115 (186)
T ss_pred             ecCCCCCCCCHHHHHHHHH--hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence            32  234677777775432  23444 99999999  455567777776543

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.91  E-value=9.2e-09  Score=90.35  Aligned_cols=102  Identities=20%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcE
Q 007143          327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI  404 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~  404 (616)
                      ++++++++.|+++++|.+  ++.||++|.|++++.|.++   .+..++.++.+.+.....++.||++|.|     +.++.
T Consensus         1 ~v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----g~~~~   72 (109)
T cd04647           1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH---NHDIDDPERPIEQGVTSAPIVIGDDVWI-----GANVV   72 (109)
T ss_pred             CeEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC---CCCCCccccccccccccCCeEECCCCEE-----CCCCE
Confidence            367888899999998877  8999999999999988654   2333333333333334444444444444     33333


Q ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       405 Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      |..++.|+++|+|+.++.|..  .+++++++...
T Consensus        73 i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~g~  104 (109)
T cd04647          73 ILPGVTIGDGAVVGAGSVVTK--DVPPNSIVAGN  104 (109)
T ss_pred             EcCCCEECCCCEECCCCEEee--ECCCCCEEEcc
Confidence            344444444444444444442  35555555443

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=98.91  E-value=1.7e-08  Score=100.14  Aligned_cols=115  Identities=22%  Similarity=0.261  Sum_probs=81.5

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      .|||||+|.|+||++   ..||+|+|++|+|||+|+++.+..++ +++|+|++++........+.....    ...+.++
T Consensus         2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~----~~~~~~~   74 (218)
T cd02516           2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL----SKVVKIV   74 (218)
T ss_pred             EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc----CCCeEEE
Confidence            589999999999986   37999999999999999999999986 999999998765444443321110    1234444


Q ss_pred             eCCCccCHHHHHHHHHhcccc---cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ESHNIISAGDALRLIYEQNVI---HGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i---~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ...  .+.+.+++....  .+   ..+ +|++.||+  +....++.+++.++.
T Consensus        75 ~~~--~~~~~si~~al~--~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~  123 (218)
T cd02516          75 EGG--ATRQDSVLNGLK--ALPDADPDIVLIHDAARPFVSPELIDRLIDALKE  123 (218)
T ss_pred             CCc--hHHHHHHHHHHH--hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhh
Confidence            332  234555664432  23   334 78888998  666789999998854

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.90  E-value=1.4e-08  Score=88.37  Aligned_cols=64  Identities=33%  Similarity=0.470  Sum_probs=41.2

Q ss_pred             eEECCCCEECCCCEEeceEECCCCEECCCcE---EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143          363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE---LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~---I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      ++||+++.||++|.|     ++++.|+.++.   +..++|+++++|+.++.+..+++|++++.|+++++|.+
T Consensus        23 ~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~   89 (101)
T cd03354          23 IVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK   89 (101)
T ss_pred             EEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence            355555666655543     45555555553   56677777777777777777777777777777766543

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=4e-09  Score=108.76  Aligned_cols=82  Identities=23%  Similarity=0.359  Sum_probs=50.6

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA  409 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~  409 (616)
                      +++++.|+..+.| ..++||.+|.||++++|.+|.|.+|++||++|.|++|+|+.++.||++|.+.+|+||.+-+|.+..
T Consensus       337 v~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~  415 (433)
T KOG1462|consen  337 VGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKG  415 (433)
T ss_pred             cCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccc
Confidence            3444444444444 455666666666666666666666666666666666666666666666666666666666655444


Q ss_pred             EEC
Q 007143          410 VLK  412 (616)
Q Consensus       410 ~I~  412 (616)
                      +.+
T Consensus       416 ~~~  418 (433)
T KOG1462|consen  416 KHG  418 (433)
T ss_pred             ccc
Confidence            443

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=98.90  E-value=1.4e-08  Score=101.58  Aligned_cols=115  Identities=17%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.|||||+|.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++|+|++++.. +.+.+.+.. ..     ..+
T Consensus         3 ~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~-----~~~   73 (227)
T PRK00155          3 MVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-KD-----PKV   73 (227)
T ss_pred             ceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-cC-----Cce
Confidence            47899999999999962   45999999999999999999999875 899999998654 444333321 10     123


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      .++...  .+.+.+++...  ..+ ..+ +|++.||+  +....+..+++.++.
T Consensus        74 ~~~~~~--~~~~~sv~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~  123 (227)
T PRK00155         74 TVVAGG--AERQDSVLNGL--QALPDDDWVLVHDAARPFLTPDDIDRLIEAAEE  123 (227)
T ss_pred             EEeCCc--chHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence            344322  23566666543  233 334 78888998  666789999998765

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.88  E-value=1.4e-08  Score=99.10  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEe---ceEECCCCEECCCcEEeceE------------------
Q 007143          345 FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRHVI------------------  398 (616)
Q Consensus       345 ~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~si------------------  398 (616)
                      +..+|+++.++.++.+     ....||++|.|++++.|.   +..||++|.|+.++.|.+..                  
T Consensus        43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~  122 (192)
T PRK09677         43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD  122 (192)
T ss_pred             eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence            3344444444444444     256899999999999996   68999999999999986421                  


Q ss_pred             ----ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 ----VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 ----Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                          -...+.||++++|+.+++|..+++||++++|+++++|..
T Consensus       123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK  165 (192)
T ss_pred             hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence                124688999999999999999999999999999999986

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.88  E-value=1.6e-08  Score=99.30  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.+.+||||+|.++||+.     ||+|+|++|+|||+|+++.|... +.+|+|++++ .+.++....         ..+.
T Consensus         6 ~~~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~---------~~~~   69 (200)
T PRK02726          6 NNLVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP---------PGCH   69 (200)
T ss_pred             CCceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc---------CCCe
Confidence            358899999999999975     89999999999999999999764 7889888764 333333221         1244


Q ss_pred             EEeCCC-ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143          107 TIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       107 ~i~~~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~  154 (616)
                      ++.... ..|...+++....  .+..+ ++++.||+  +....+..+++.+.
T Consensus        70 ~i~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~  119 (200)
T PRK02726         70 WLREPPPSQGPLVAFAQGLP--QIKTEWVLLLACDLPRLTVDVLQEWLQQLE  119 (200)
T ss_pred             EecCCCCCCChHHHHHHHHH--hCCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            454333 2566666664432  33444 99999999  56667888887654

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.86  E-value=2e-08  Score=95.95  Aligned_cols=75  Identities=24%  Similarity=0.239  Sum_probs=61.0

Q ss_pred             eEECCCCEECCCCEEe---ceEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143          363 SVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGER  426 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~  426 (616)
                      ..||++|.|+.+|+|.   +.+|++++.|+++|.|.             +..++..++||++|+|+.+++|..+++||++
T Consensus        63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~  142 (169)
T cd03357          63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN  142 (169)
T ss_pred             CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence            4566666666666663   46788888888888883             2356778999999999999999999999999


Q ss_pred             CEECCCCEEcc
Q 007143          427 FVVPAHSKVSL  437 (616)
Q Consensus       427 ~~v~~~~~v~~  437 (616)
                      ++|+++++|..
T Consensus       143 ~~VgagavV~~  153 (169)
T cd03357         143 SVIGAGSVVTK  153 (169)
T ss_pred             CEECCCCEEcc
Confidence            99999999976

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.86  E-value=1.2e-08  Score=109.45  Aligned_cols=81  Identities=25%  Similarity=0.423  Sum_probs=71.0

Q ss_pred             ECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143          348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF  427 (616)
Q Consensus       348 Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~  427 (616)
                      +-+.+.|++.++|.+|+||++|.|+++ +|.+|+||++|+|+++|+|.+|+|++++.||.++.|. +|+||++++|++++
T Consensus       280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~~  357 (361)
T TIGR02091       280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR-NAIIDKNVRIGEGV  357 (361)
T ss_pred             CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe-eeEECCCCEECCCC
Confidence            444566666667788999999999987 8899999999999999999999999999999999995 78898888888888


Q ss_pred             EEC
Q 007143          428 VVP  430 (616)
Q Consensus       428 ~v~  430 (616)
                      +|+
T Consensus       358 ~i~  360 (361)
T TIGR02091       358 VIG  360 (361)
T ss_pred             EeC
Confidence            775

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.86  E-value=9.1e-09  Score=110.66  Aligned_cols=80  Identities=24%  Similarity=0.388  Sum_probs=70.7

Q ss_pred             CCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          350 YGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       350 ~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      +.+.|++++.|.+|+||++|+|+  +.|.+|+|+++|.|+++|+|.+|+|++++.|++++.|. +|+||.+++|++++.+
T Consensus       277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCEe
Confidence            56667777777889999999997  46999999999999999999999999999999999997 6999999988888887


Q ss_pred             CCC
Q 007143          430 PAH  432 (616)
Q Consensus       430 ~~~  432 (616)
                      .+.
T Consensus       354 ~~~  356 (369)
T TIGR02092       354 AGT  356 (369)
T ss_pred             CCC
Confidence            553

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=98.85  E-value=3e-08  Score=100.75  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCc
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~  103 (616)
                      ...+.+||||+|.|+||+.   ..||+|++++|+|||+|+++.+... ++++|+|++++. .+.++..+..  +    +.
T Consensus        22 ~~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--~----~~   92 (252)
T PLN02728         22 EKSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--I----DV   92 (252)
T ss_pred             cCceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--c----CC
Confidence            3346799999999999973   5799999999999999999999985 899999999875 4455555433  1    12


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCce----ecchhHHHHHHHHHHh
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDT----VSNMLLTQALQEHKER  156 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~----i~~~~l~~~l~~h~~~  156 (616)
                      .+.++....  +..+.++....  .+. +..+|+.+|.    +....+..+++.+++.
T Consensus        93 ~i~~v~gg~--~r~~SV~~gl~--~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~  146 (252)
T PLN02728         93 PLKFALPGK--ERQDSVFNGLQ--EVDANSELVCIHDSARPLVTSADIEKVLKDAAVH  146 (252)
T ss_pred             ceEEcCCCC--chHHHHHHHHH--hccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence            344443222  22334443222  233 2356677773    5556778888877653

>PLN02739 serine acetyltransferase

Probab=98.84  E-value=1e-08  Score=106.24  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      +.+||++|+||.|++|..++.||++++||+|++    ||+++++...|
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~P  304 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNP  304 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecC
Confidence            456688888888888877777777777777776    56666665543

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.84  E-value=2.3e-08  Score=81.84  Aligned_cols=73  Identities=29%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             eEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEEC---CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVC---DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg---~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      ++||++|.|+++++|.+ +.|++++.|+++|.|.+....   ..+.||++++|+.+|+|..+++||++++|++++.|
T Consensus         1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v   77 (78)
T cd00208           1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV   77 (78)
T ss_pred             CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence            35777777777777764 778888888888887665432   35788888888888888888888888888877766

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK10502 putative acyl transferase; Provisional

Probab=98.84  E-value=2.7e-08  Score=96.27  Aligned_cols=92  Identities=26%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             cEECCCCEECCCCEEe---ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec----------eEECCCcEECCCC
Q 007143          346 TVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH----------VIVCDGVIMKAGA  409 (616)
Q Consensus       346 ~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~----------siIg~~v~Ig~~~  409 (616)
                      +.||+++.|++++.|.   +..||++|.||++|.|.   ...|+++|.|+++|.|..          ..+...+.||++|
T Consensus        52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~  131 (182)
T PRK10502         52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC  131 (182)
T ss_pred             cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence            3445555555555553   57899999999999996   578999999998888742          2345678999999


Q ss_pred             EECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          410 VLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       410 ~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +|+.+++|..|++||++++|+++++|..
T Consensus       132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~  159 (182)
T PRK10502        132 WLAADVFVAPGVTIGSGAVVGARSSVFK  159 (182)
T ss_pred             EEcCCCEEcCCCEECCCCEECCCCEEec
Confidence            9999999999999999999999999875

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.83  E-value=6.4e-08  Score=98.47  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCC---CEEeceEECCCCEECCCcEEeceEECCC
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSN---VLIEGSYIWDNVIIEDGCELRHVIVCDG  402 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~---~~I~~s~I~~~v~Ig~~~~I~~siIg~~  402 (616)
                      ++.+++++.|++++.|+..    .+++||++++|+ ++.|+.+|.||..   +...+.+|+++|.||.+|.|     ..+
T Consensus       141 gidI~~~a~IG~g~~I~h~----~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~I-----lgg  211 (273)
T PRK11132        141 QVDIHPAAKIGRGIMLDHA----TGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKI-----LGN  211 (273)
T ss_pred             eeEecCcceECCCeEEcCC----CCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEE-----cCC
Confidence            4445555555555555421    234555544332 2334444444421   22234678888888888777     445


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCE
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      ++||++++|++|++|..+  |.++++
T Consensus       212 v~IG~~a~IGAgSvV~~d--Vp~~~~  235 (273)
T PRK11132        212 IEVGRGAKIGAGSVVLQP--VPPHTT  235 (273)
T ss_pred             CEECCCCEECCCCEECcc--cCCCcE
Confidence            555555555555555543  555554

>PLN02357 serine acetyltransferase

Probab=98.83  E-value=1.5e-08  Score=105.88  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSL  437 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~  437 (616)
                      .+++||++|+||.|+.|..+++||++++||+|++    ||+++++..
T Consensus       277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G  323 (360)
T PLN02357        277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVG  323 (360)
T ss_pred             cCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEEC
Confidence            4567788888888877776777777777777776    355555544

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=98.82  E-value=3.2e-08  Score=99.46  Aligned_cols=109  Identities=20%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH--HHHHHHHHhcCCCCCCCcEEEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~--~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      |||||+|.++||.      +|+|+|++|+|||+|+++.+..++ +++|+|+++...  +.+.+++...        .+.+
T Consensus         2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~--------~v~~   67 (233)
T cd02518           2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL--------GVKV   67 (233)
T ss_pred             EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc--------CCeE
Confidence            7999999999994      699999999999999999999997 899999998764  6677766531        2344


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      +..+...+.+..+..+..   ...+ ++++.||+  +....++.+++.++..
T Consensus        68 v~~~~~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~  116 (233)
T cd02518          68 FRGSEEDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKS  116 (233)
T ss_pred             EECCchhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence            544433222222221111   2334 89999999  6667899999988753

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK10191 putative acyl transferase; Provisional

Probab=98.82  E-value=3e-08  Score=91.97  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=17.1

Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      .||++|+||.++.|..++.||++++||++++
T Consensus        94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~  124 (146)
T PRK10191         94 HIGNGVELGANVIILGDITIGNNVTVGAGSV  124 (146)
T ss_pred             EECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence            4555555555555555555555555555554

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.81  E-value=4.7e-08  Score=94.40  Aligned_cols=83  Identities=22%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECC
Q 007143          347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKP  413 (616)
Q Consensus       347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~  413 (616)
                      .+|.++.||+++     +|+.+|.|++.+.|   .||++|.|+.+|.|.             +..++..+.||++|+|+.
T Consensus        69 ~~g~~i~iG~~~-----~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~  140 (183)
T PRK10092         69 DYGYNIFLGNNF-----YANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGG  140 (183)
T ss_pred             eecCCcEEcCCc-----EECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECC
Confidence            445555555554     33444444443332   678888888888774             245678899999999999


Q ss_pred             CCEECCCcEECCCCEECCCCEEcc
Q 007143          414 GVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       414 g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +|+|.++++||++++|+++++|.+
T Consensus       141 ~a~I~~gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        141 RAVINPGVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             CCEECCCCEECCCCEECCCCEEcc
Confidence            999999999999999999999976

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=98.81  E-value=1.7e-07  Score=93.51  Aligned_cols=206  Identities=13%  Similarity=0.136  Sum_probs=123.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~  109 (616)
                      |||+|.|.++||.      .|.|+|++|+|||.|+++.+.+++ +++|+|.+.  .+.+.++..+.      +..+.+..
T Consensus         2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~~------g~~v~~~r   67 (222)
T TIGR03584         2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKSY------GASVPFLR   67 (222)
T ss_pred             EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHHc------CCEeEEeC
Confidence            7999999999994      699999999999999999999987 566766443  34566655531      23343321


Q ss_pred             ----CCCccCHHHHHHHHHhcc--cccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143          110 ----SHNIISAGDALRLIYEQN--VIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ  180 (616)
Q Consensus       110 ----~~~~~~~gdalr~~~~~~--~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~  180 (616)
                          .....++.++++.....-  .-..| |+++.+|.  +...++..+++.+++.     ++...+-+.+....    +
T Consensus        68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~-----~~ds~~sv~~~~~~----~  138 (222)
T TIGR03584        68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP-----NAHFVFSVTSFAFP----I  138 (222)
T ss_pred             hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEeeccCCC----h
Confidence                123457777777654321  01134 99999999  5667999999988763     23333333333211    1


Q ss_pred             cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHH
Q 007143          181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH  260 (616)
Q Consensus       181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~d  260 (616)
                      .+      .+.++ +.+++..+..... ......+++            .-..+..||+++++.+.-  .          
T Consensus       139 ~~------~~~~~-~~g~~~~~~~~~~-~~~rQd~~~------------~y~~nga~y~~~~~~~~~--~----------  186 (222)
T TIGR03584       139 QR------AFKLK-ENGGVEMFFPEHF-NTRSQDLEE------------AYHDAGQFYWGKSQAWLE--S----------  186 (222)
T ss_pred             HH------heEEC-CCCcEEecCCCcc-cCCCCCCch------------heeeCCeEEEEEHHHHHh--c----------
Confidence            11      12222 2344433332100 000001111            112356799998875421  1          


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                             ....+.+++.|++++....+|+++.++.-+-
T Consensus       187 -------~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae  217 (222)
T TIGR03584       187 -------GPIFSPHSIPIVLPRHLVQDIDTLEDWERAE  217 (222)
T ss_pred             -------CCccCCCcEEEEeCccceeCCCCHHHHHHHH
Confidence                   0114678899999877899999999988763

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=98.80  E-value=5.5e-08  Score=97.60  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.+||||+|.|+||+.   ..||+|+|++|+|||+|+++.+..+ ++.+|+|+++.. ...+.+++....+.   ...+.
T Consensus         3 ~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~---~~~~~   76 (230)
T PRK13385          3 YELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA---DQRVE   76 (230)
T ss_pred             eEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC---CCceE
Confidence            6789999999999973   4699999999999999999999986 589999988754 34455555432221   01244


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ++....  +..++++....  .+. .+ +|++.||.  +....+..+++.+++
T Consensus        77 ~v~~g~--~r~~sv~~gl~--~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~  125 (230)
T PRK13385         77 VVKGGT--ERQESVAAGLD--RIGNEDVILVHDGARPFLTQDIIDRLLEGVAK  125 (230)
T ss_pred             EcCCCc--hHHHHHHHHHH--hccCCCeEEEccCCCCCCCHHHHHHHHHHHhh
Confidence            443322  22355554322  232 35 67778999  666688999998765

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.80  E-value=2e-08  Score=110.42  Aligned_cols=100  Identities=21%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC----------------C---CEECCCCEEeceEECCCCEE
Q 007143          328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE----------------G---CTIGSNVLIEGSYIWDNVII  388 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~----------------~---~~Ig~~~~I~~s~I~~~v~I  388 (616)
                      .++++++.|+ ++.| .+++|+++|.|+++|+|.+++|..                +   +.||++|.|.+++|+++|.|
T Consensus       316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I  393 (436)
T PLN02241        316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI  393 (436)
T ss_pred             eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence            6788899998 8888 478999999999999999887633                3   38999999999999999999


Q ss_pred             CCCcEEeceEECCCcEECCCCEECCCCEECCC-cEECCCCEECCCCE
Q 007143          389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK-VVIGERFVVPAHSK  434 (616)
Q Consensus       389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~-v~Ig~~~~v~~~~~  434 (616)
                      |++|.|.     ...-+....+++++|+|++| |+||++++|++|++
T Consensus       394 g~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  435 (436)
T PLN02241        394 GKNVVII-----NKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV  435 (436)
T ss_pred             CCCcEEe-----cccccCCccccccccEEeCCEEEEcCCcEeCCCCC
Confidence            9998884     33333344444445555555 56666666666654

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.78  E-value=2.9e-08  Score=94.35  Aligned_cols=93  Identities=31%  Similarity=0.402  Sum_probs=57.6

Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc---EEeceEECCCcEECCCC
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC---ELRHVIVCDGVIMKAGA  409 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~---~I~~siIg~~v~Ig~~~  409 (616)
                      ++.|++.++||++.+|..++-|         +||+.+.||++|.|.     .+|++|..-   --++-.||++|.||+||
T Consensus        67 gieIhp~A~IG~g~fIdHg~Gv---------VIgeta~IGddv~I~-----~gVTLGgtg~~~g~RhPtIg~~V~IGagA  132 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHGTGV---------VIGETAVIGDDVTIY-----HGVTLGGTGKESGKRHPTIGNGVYIGAGA  132 (194)
T ss_pred             ceeeCCCCeECCceEEcCCceE---------EEcceeEECCCeEEE-----cceEecCCCCcCCCCCCccCCCeEECCCC
Confidence            4556666666555555544322         556666666655542     222332221   13456778888888888


Q ss_pred             EECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          410 VLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       410 ~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      .|-.+..||+|++||+|++    ||+++++...|
T Consensus       133 kILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvP  166 (194)
T COG1045         133 KILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVP  166 (194)
T ss_pred             EEEcceEECCCCEECCCceEccCCCCCceEecCc
Confidence            8877788888888888887    56677766654

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.77  E-value=2.1e-08  Score=110.03  Aligned_cols=100  Identities=21%  Similarity=0.223  Sum_probs=77.6

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC-------------------CCEECCCCEEeceEECCCCE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE-------------------GCTIGSNVLIEGSYIWDNVI  387 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~-------------------~~~Ig~~~~I~~s~I~~~v~  387 (616)
                      +.++++++.| +++.|. +++||++|.||++++|.+|+|+.                   +|.||++|.|.+++|+.+|.
T Consensus       308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~  385 (429)
T PRK02862        308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR  385 (429)
T ss_pred             eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence            4688999988 788884 78999999999999999999865                   79999999999999999999


Q ss_pred             ECCCcEEeceE-ECCCcEECCCCEECCC-CEECCCcEECCCCE
Q 007143          388 IEDGCELRHVI-VCDGVIMKAGAVLKPG-VVLSFKVVIGERFV  428 (616)
Q Consensus       388 Ig~~~~I~~si-Ig~~v~Ig~~~~I~~g-~vIg~~v~Ig~~~~  428 (616)
                      ||++|+|.+.. +..-=....++.|+.| |+|+.++++.++++
T Consensus       386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (429)
T PRK02862        386 IGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTV  428 (429)
T ss_pred             ECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCC
Confidence            99999996432 2211112235666666 66777777777664

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.76  E-value=8.4e-08  Score=84.47  Aligned_cols=84  Identities=24%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceEECCCCEECCCc-EEeceEECCCcEECCCCEECCCCEECCC
Q 007143          345 FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC-ELRHVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       345 ~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~-~I~~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      +..||+++.|++++.|.   ...||++|.|+++|.|....  ......... ......||++|+||.++.|.++++|+++
T Consensus         3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~--h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~   80 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGS--HDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG   80 (107)
T ss_pred             eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCC--CCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence            34455555555555553   46788888888888774210  011111111 2245566777777777777776666666


Q ss_pred             cEECCCCEEC
Q 007143          421 VVIGERFVVP  430 (616)
Q Consensus       421 v~Ig~~~~v~  430 (616)
                      +.|+++++|.
T Consensus        81 ~~i~~gs~v~   90 (107)
T cd05825          81 AVVGARSVVV   90 (107)
T ss_pred             CEECCCCEEe
Confidence            6666666643

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.75  E-value=3.8e-08  Score=105.22  Aligned_cols=88  Identities=30%  Similarity=0.385  Sum_probs=49.3

Q ss_pred             CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcE-----EeceEECCCcEECCCC-E
Q 007143          337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE-----LRHVIVCDGVIMKAGA-V  410 (616)
Q Consensus       337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~-----I~~siIg~~v~Ig~~~-~  410 (616)
                      .+.+.+.+++.||++|.| .++.|     +.+|.||++|.|.+++|+++++||++|+     |.+|+|++++.|+.++ .
T Consensus       246 ~~~~~i~~~~~i~~~~~i-~~~~i-----~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~  319 (353)
T TIGR01208       246 DDESKIRGRVVVGEGAKI-VNSVI-----RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQAR  319 (353)
T ss_pred             CCCCEEcCCEEECCCCEE-eCCEE-----ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcce
Confidence            445566666666666666 44444     3344444444444444445555555544     4566666666666653 4


Q ss_pred             ECCCCEECCCcEECCCCEECC
Q 007143          411 LKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       411 I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      +. +++|+++++|++++.++.
T Consensus       320 ~~-~~ii~~~~~i~~~~~~~~  339 (353)
T TIGR01208       320 IV-DSVIGKKVRIKGNRRRPG  339 (353)
T ss_pred             ee-cCEEcCCCEECCCccccc
Confidence            43 566777777766666654

Alternate name: dTDP-D-glucose synthase

>PLN02694 serine O-acetyltransferase

Probab=98.75  E-value=3.3e-08  Score=100.60  Aligned_cols=84  Identities=23%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCC
Q 007143          327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG  402 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~  402 (616)
                      ++-+++++.|++++.|..  +++||++|.||++|.|. +++||..   +..+...+++|+++|.||.++.| .++.||++
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~  236 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEG  236 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence            444666666666665543  45555555555555442 3333332   23344456788888888888887 45666666


Q ss_pred             cEECCCCEECC
Q 007143          403 VIMKAGAVLKP  413 (616)
Q Consensus       403 v~Ig~~~~I~~  413 (616)
                      +.||++++|..
T Consensus       237 a~IGAgSVV~k  247 (294)
T PLN02694        237 AKIGAGSVVLI  247 (294)
T ss_pred             CEECCCCEECC
Confidence            66666666653

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.75  E-value=1.6e-08  Score=90.12  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             ecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEeceEECCCCEE
Q 007143          325 RRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIWDNVII  388 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~s~I~~~v~I  388 (616)
                      .+++.+...+.+..++.|.+   ++.+|..|.++.+++|+             +..||+++.|+++|++..+.|++.+.+
T Consensus        31 sQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~  110 (184)
T KOG3121|consen   31 SQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHL  110 (184)
T ss_pred             cceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEe
Confidence            35777777788888888864   68888888888888885             368999999999999988888888877


Q ss_pred             CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |.+++|           |.+|++.+.|.|-++.++.+.+++|+.++++.-|
T Consensus       111 Gknavi-----------GrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p  150 (184)
T KOG3121|consen  111 GKNAVI-----------GRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNP  150 (184)
T ss_pred             ccceeE-----------cCceEhhhheeccCCcccCcccccCCceEEcCCC
Confidence            665544           5555555556666677777778888888887765

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=98.74  E-value=7e-08  Score=103.56  Aligned_cols=113  Identities=14%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.+||||+|.|+||+    ..||+|+|++|+|||+|+++.+.. .+++|+|++....+.+.+++..        +.+..
T Consensus         5 ~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~--------~~~i~   71 (366)
T PRK14489          5 QIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG--------LPVYP   71 (366)
T ss_pred             CceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC--------CcEEe
Confidence            4789999999999995    249999999999999999999986 4899998777655555544322        22211


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      -......|....++....  .+..+ +|++.||+  +....+..+++.++.
T Consensus        72 d~~~g~~G~~~si~~gl~--~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~  120 (366)
T PRK14489         72 DILPGFQGPLSGILAGLE--HADSEYLFVVACDTPFLPENLVKRLSKALAI  120 (366)
T ss_pred             cCCCCCCChHHHHHHHHH--hcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence            111222466566664332  24445 99999998  555567777776543

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.74  E-value=4.2e-08  Score=97.34  Aligned_cols=95  Identities=25%  Similarity=0.331  Sum_probs=71.8

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECC
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED  390 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~  390 (616)
                      -...|...|+++++.+.+.+.|.=++.++.+|+|.-++.++ ..+||+||.||.++.|.+         .+|++||.||.
T Consensus       114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA  193 (271)
T COG2171         114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA  193 (271)
T ss_pred             ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence            34667889999999999988888899999999998888886 567999999999999974         46777777777


Q ss_pred             Cc-EEeceEECCCcEECCCCEECCCC
Q 007143          391 GC-ELRHVIVCDGVIMKAGAVLKPGV  415 (616)
Q Consensus       391 ~~-~I~~siIg~~v~Ig~~~~I~~g~  415 (616)
                      ++ .+.+.++|++|+|+.|+.|..++
T Consensus       194 ns~~veGV~vGdg~VV~aGv~I~~~t  219 (271)
T COG2171         194 NSEVVEGVIVGDGCVVAAGVFITQDT  219 (271)
T ss_pred             ccceEeeeEeCCCcEEecceEEeCCc
Confidence            76 34455555555555444444443

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.74  E-value=2.8e-08  Score=108.86  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             CEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143          358 SKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH  432 (616)
Q Consensus       358 ~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~  432 (616)
                      +.+.+|+||++|.| ++|.|.+|+||++|.|+++|.|.+|+|+++|.||++|+|. +|+|+++|+|+++++|+.+
T Consensus       323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe-eEEECCCCEECCCCEECCC
Confidence            34668999999999 7899999999999999999999999999999999999996 6777777777777666554

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.73  E-value=7.2e-08  Score=89.62  Aligned_cols=46  Identities=30%  Similarity=0.349  Sum_probs=31.9

Q ss_pred             EEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEccc
Q 007143          393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLL  438 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~  438 (616)
                      ...+++||++|+||.+++|.++++||++++||++++    +++++++...
T Consensus        70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~  119 (145)
T cd03349          70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGN  119 (145)
T ss_pred             ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEec
Confidence            345677788888888888877777777777777776    4455555443

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.73  E-value=1e-07  Score=82.89  Aligned_cols=61  Identities=26%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             EcCCcEECCCCEECC--CcEECCCCEECCCCEEeceEECCCCEECCCCE---EeceEECCCCEECCCcEEe
Q 007143          330 RALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVL---IEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~---I~~s~I~~~v~Ig~~~~I~  395 (616)
                      +++++.|++++.|+.  .++||+++.|+++     +.|+.++.|+.++.   +..++|++++.|+.++.+.
T Consensus         5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~-----~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~   70 (101)
T cd03354           5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDN-----CTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKIL   70 (101)
T ss_pred             eCCCCEECCCEEECCCCeEEECCCCEECCC-----CEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEE
Confidence            444444444444433  2334444444444     34566666666664   4566777777777776663

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.72  E-value=9.1e-08  Score=96.94  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             eecceEEcCCcEECCCCEECCCc-EECCCCEECCCCEE-eceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFT-VIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC  392 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~-~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~  392 (616)
                      .|-..|+++++.|.+.+.|..++ .||.. .|  ++.| ++++||++|.|++++.|.+         ..|+++|.||.+|
T Consensus       162 VRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA  238 (319)
T TIGR03535       162 VRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANS  238 (319)
T ss_pred             eeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCC
Confidence            44456666666666666666666 46653 44  3455 3566666666666666433         4455555555555


Q ss_pred             EEeceEECCCcEECCCCEE
Q 007143          393 ELRHVIVCDGVIMKAGAVL  411 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I  411 (616)
                      .| +..||++|+||+|++|
T Consensus       239 ~I-GI~IGd~~VVGAGaVV  256 (319)
T TIGR03535       239 GL-GISLGDDCVVEAGLYV  256 (319)
T ss_pred             EE-CeEECCCCEECCCCEE
Confidence            54 3333333333333333

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.69  E-value=1.8e-08  Score=90.46  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEE----eceEECCCCEECCCCEEec--------------eEECCCCEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIEG--------------SYIWDNVII  388 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I----~~s~IG~~~~Ig~~~~I~~--------------s~I~~~v~I  388 (616)
                      .+-+.+++.+-..+.|.+.+.|+++|.|.+.+++    +..+||+||.|.+.++|.+              -+||.+...
T Consensus         8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF   87 (190)
T KOG4042|consen    8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF   87 (190)
T ss_pred             eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence            3556677777777778899999999999999988    4789999999999998864              367777777


Q ss_pred             CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      .-+|..+...+|++-+|+..|.+++||.+.+||.||+++.|-
T Consensus        88 eVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~  129 (190)
T KOG4042|consen   88 EVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVF  129 (190)
T ss_pred             EeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence            777887777888888888888888887777777777777643

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.68  E-value=7.7e-08  Score=98.52  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------CCcEEEEEcCCcHHHHHHHHHhcC
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------GVAEVFVFCCAHSKQVIDYLENSE   96 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------Gv~eI~vv~~~~~~~i~~~l~~~~   96 (616)
                      -+||||||.||||+   ...||+|+||+   |+|+|+|+++.+...        +|..+++...+..+.+++|+++..
T Consensus         2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~   76 (266)
T cd04180           2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN   76 (266)
T ss_pred             EEEEECCCCccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence            57999999999996   58899999999   999999999999873        355554444455788999998854

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.68  E-value=8.2e-08  Score=104.68  Aligned_cols=71  Identities=27%  Similarity=0.467  Sum_probs=61.7

Q ss_pred             EEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143          359 KISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       359 ~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      .+.+++||++|.|+ ++.|.+|+|+++|+|+.+|+|.+|+|+++|.||++|+|. +|+|+++++|+++++|+.
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence            45678999999998 899999999999999999999999999999999999997 588888888887776655

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.67  E-value=2.1e-07  Score=81.94  Aligned_cols=34  Identities=32%  Similarity=0.363  Sum_probs=14.5

Q ss_pred             CcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          402 GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      .+.||++|+|+.+++|..+++||++++|++++.|
T Consensus        56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v   89 (107)
T cd05825          56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV   89 (107)
T ss_pred             CEEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            3444444444444444444444444444444444

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=7e-08  Score=101.22  Aligned_cols=93  Identities=26%  Similarity=0.402  Sum_probs=78.4

Q ss_pred             CCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEE
Q 007143          338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      ++..|......-+.+++..++.+.+|.|+.+|.|..  .|.+|+|+.+++|+.+|.|++|+|..+|.||.+|+|. .|+|
T Consensus       272 ~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aII  348 (393)
T COG0448         272 RNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAII  348 (393)
T ss_pred             CCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEEe
Confidence            344555555566777777788899999999999965  9999999999999999999999999999999999998 5888


Q ss_pred             CCCcEECCCCEECCCC
Q 007143          418 SFKVVIGERFVVPAHS  433 (616)
Q Consensus       418 g~~v~Ig~~~~v~~~~  433 (616)
                      ..+|+|++|++|+...
T Consensus       349 Dk~v~I~~g~~i~~~~  364 (393)
T COG0448         349 DKNVVIGEGVVIGGDK  364 (393)
T ss_pred             CCCcEeCCCcEEcCCc
Confidence            8888888777776543

>PRK10191 putative acyl transferase; Provisional

Probab=98.64  E-value=2.1e-07  Score=86.32  Aligned_cols=11  Identities=9%  Similarity=0.054  Sum_probs=4.0

Q ss_pred             CCcEECCCCEE
Q 007143          332 LEIEQSRSAQV  342 (616)
Q Consensus       332 ~~v~i~~~~~I  342 (616)
                      .++.+++++.|
T Consensus        46 ~~a~Ig~~~~I   56 (146)
T PRK10191         46 AAATIGRRFTI   56 (146)
T ss_pred             CCCEECCCeEE
Confidence            33333333333

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.64  E-value=2.2e-07  Score=88.14  Aligned_cols=31  Identities=19%  Similarity=0.135  Sum_probs=15.7

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCC
Q 007143          328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNS  358 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~  358 (616)
                      +.+++++.|++++.|+.  +++|++++.||++|
T Consensus        62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~   94 (162)
T TIGR01172        62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDV   94 (162)
T ss_pred             eEeCCCCEECCCeEECCCCeEEECCCCEECCCC
Confidence            44555555555555542  24555555555554

Cysteine biosynthesis

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=98.63  E-value=5e-06  Score=80.68  Aligned_cols=236  Identities=14%  Similarity=0.099  Sum_probs=144.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+-+||.|-=.+|||-      -|||-.|+|+|||.|+.+...++|+.+++|.+-+  +.|.+.+.+.      |..+..
T Consensus         3 ~~~viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~------G~~avm   68 (247)
T COG1212           3 KFVVIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF------GGEAVM   68 (247)
T ss_pred             ceEEEEecchhcccCC------CCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh------CCEEEe
Confidence            4567777777778887      4999999999999999999999999999888864  5677777652      223322


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC--EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD--FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d--fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      -..+-..|+ |-+.+...+--+.++  ++=+-||.  |-...+..+++..++.    +-.++|++.+-..+.     ..+
T Consensus        69 T~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~----~~~~aTl~~~i~~~e-----e~~  138 (247)
T COG1212          69 TSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS----NADMATLAVKITDEE-----EAF  138 (247)
T ss_pred             cCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC----CcceeeeeeecCCHH-----Hhc
Confidence            222222232 333333323223344  56678998  5556777777766653    235677777665432     233


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhh
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVK  263 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~  263 (616)
                      ..+-+-++.| +.++-|+|..-|-|-.....-+            ..-|...|||-+...+|.-|..--.-.--+..-+.
T Consensus       139 nPN~VKvV~d-~~g~ALYFSRs~iP~~rd~~~~------------~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LE  205 (247)
T COG1212         139 NPNVVKVVLD-KEGYALYFSRAPIPYGRDNFGG------------TPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLE  205 (247)
T ss_pred             CCCcEEEEEc-CCCcEEEEEcCCCCCcccccCC------------cchhheeehHHhHHHHHHHHHhcCCchhHHHHHHH
Confidence            3333334444 5789999988765321110000            12345679999999999877542110000000111


Q ss_pred             hhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          264 GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       264 ~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      . |.-...|.+|++.+..+-....|++++++..+-+-+
T Consensus       206 Q-LR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~  242 (247)
T COG1212         206 Q-LRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL  242 (247)
T ss_pred             H-HHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence            0 111337899999998856678999999998876544

>PLN02357 serine acetyltransferase

Probab=98.62  E-value=2e-07  Score=97.51  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCc
Q 007143          328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGV  403 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~v  403 (616)
                      +.+++++.|++++.|..  +++||++++||+++.|. +++||..   |......+++|+++|.||.++.| .++.||+++
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga  303 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA  303 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence            34445555554444442  34444444444444332 2222221   01111235778888888888776 456667666


Q ss_pred             EECCCCEECC
Q 007143          404 IMKAGAVLKP  413 (616)
Q Consensus       404 ~Ig~~~~I~~  413 (616)
                      .||++++|..
T Consensus       304 ~IGAgSVV~~  313 (360)
T PLN02357        304 KIGAGSVVLK  313 (360)
T ss_pred             EECCCCEECc
Confidence            6666666653

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.4e-07  Score=94.24  Aligned_cols=91  Identities=22%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             CEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCC----
Q 007143          340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG----  414 (616)
Q Consensus       340 ~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g----  414 (616)
                      +.|-++++|-+.+++.+.++|+ |+.||.+++||++++|..|+|.+++.|.+|+.+-+|+||.++.||..+.|..-    
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~  362 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEP  362 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccccc
Confidence            4467888888888888888887 78899999999999999999999999999999999999999999998888631    


Q ss_pred             ---------CEECCCcEECCCCEEC
Q 007143          415 ---------VVLSFKVVIGERFVVP  430 (616)
Q Consensus       415 ---------~vIg~~v~Ig~~~~v~  430 (616)
                               +++|..|.+++.+.|-
T Consensus       363 s~~~~~~a~Tilga~v~v~dev~v~  387 (407)
T KOG1460|consen  363 SPNLPFAALTILGADVSVEDEVIVL  387 (407)
T ss_pred             CCCCCcceeEEecccceecceeEEe
Confidence                     4555555555555443

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.59  E-value=2.7e-07  Score=90.31  Aligned_cols=51  Identities=18%  Similarity=0.357  Sum_probs=46.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCC
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA   83 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~   83 (616)
                      +.+.+||||+|.++||+.     ||+|+|++| +|||+|+++.+... +.+|+|++++
T Consensus         7 ~~i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~   58 (196)
T PRK00560          7 DNIPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD   58 (196)
T ss_pred             cCceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence            457899999999999976     999999999 99999999999987 8899888875

>PLN02739 serine acetyltransferase

Probab=98.58  E-value=2.5e-07  Score=96.10  Aligned_cols=38  Identities=26%  Similarity=0.169  Sum_probs=33.4

Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ..+++||++|+|+.|++|..+++||++++|++|++|..
T Consensus       255 ~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~k  292 (355)
T PLN02739        255 DRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK  292 (355)
T ss_pred             CCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence            35789999999999999988999999999999999975

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.57  E-value=1.8e-06  Score=90.73  Aligned_cols=165  Identities=13%  Similarity=0.253  Sum_probs=103.7

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHCC-----------CcEEEEEcC-CcHHHHHH
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAAG-----------VAEVFVFCC-AHSKQVID   90 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~G-----------v~eI~vv~~-~~~~~i~~   90 (616)
                      +..+.+||||||.||||   +...||+|+||+   |+|++++.++.+...+           .-.++|+++ +..+.+++
T Consensus        13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~   89 (323)
T cd04193          13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK   89 (323)
T ss_pred             cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence            34589999999999999   568899999998   7999999999999852           124568888 56788999


Q ss_pred             HHHhcCCCCCCCcEEEEEeCC---------------------CccCHHHHHHHHHhccccc-----C-C-EEEEeCcee-
Q 007143           91 YLENSEWFSQPNFTVKTIESH---------------------NIISAGDALRLIYEQNVIH-----G-D-FVLISGDTV-  141 (616)
Q Consensus        91 ~l~~~~~~~~~~~~i~~i~~~---------------------~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i-  141 (616)
                      |+++..|.....-.|+++.+.                     .+.|-|+..+.+....++.     + . +.+.+.|.+ 
T Consensus        90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L  169 (323)
T cd04193          90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL  169 (323)
T ss_pred             HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence            998865532211234433221                     2357888888776554442     2 2 566666773 


Q ss_pred             cchhHHHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          142 SNMLLTQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       142 ~~~~l~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      ...---.++-.|..+     ++.|.+ ++.+..+.     .+-|    +++.....-+|+.|.+.|.
T Consensus       170 ~~~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~-----ekvG----~l~~~~g~~~vvEysel~~  222 (323)
T cd04193         170 VKVADPVFIGFCISK-----GADVGAKVVRKRYPT-----EKVG----VVVLVDGKPQVVEYSEISD  222 (323)
T ss_pred             ccccCHHHhHHHHHc-----CCceEEEEEECCCCC-----Ccee----EEEEECCeEEEEEeecCCH
Confidence            333223445555553     466665 33433222     1223    3433223556778887764

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=98.57  E-value=5.4e-07  Score=89.51  Aligned_cols=112  Identities=28%  Similarity=0.384  Sum_probs=75.7

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +-|||+|||.|+||+.   ..||.+++++|+|+|.|+|+.+.+. .+++|+|++... .+.+++.+.+ +       ++.
T Consensus         1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~-------~v~   69 (221)
T PF01128_consen    1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K-------KVK   69 (221)
T ss_dssp             EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T-------TEE
T ss_pred             CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C-------CEE
Confidence            3589999999999985   6899999999999999999999985 789999998754 5666766655 1       255


Q ss_pred             EEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCce---ecchhHHHHHHHHHH
Q 007143          107 TIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQEHKE  155 (616)
Q Consensus       107 ~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~---i~~~~l~~~l~~h~~  155 (616)
                      ++.....  .|+-.+|..+...    .++++++==.   ++...+.++++..++
T Consensus        70 iv~GG~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~  119 (221)
T PF01128_consen   70 IVEGGATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAARE  119 (221)
T ss_dssp             EEE--SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred             EecCChhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence            5553222  2455555543221    1677665332   555577888877665

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.57  E-value=3.8e-07  Score=88.56  Aligned_cols=96  Identities=32%  Similarity=0.295  Sum_probs=65.5

Q ss_pred             CCcEECCCCEECCCCEE---eceEECCCCEECCCCEEe-ceEECCCCEECC--CcEEeceEECCCcEECCCCEECCCCEE
Q 007143          344 SFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIE-GSYIWDNVIIED--GCELRHVIVCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       344 ~~~~Ig~~~~Ig~~~~I---~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~--~~~I~~siIg~~v~Ig~~~~I~~g~vI  417 (616)
                      .+..+|..|.++.++.+   .+.+||+++.|+++|.|. ++..++...-..  ......++||++||||.+++|.+|++|
T Consensus        66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I  145 (190)
T COG0110          66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI  145 (190)
T ss_pred             cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence            45556666666666664   366788888888888885 233333332222  233346888999999999999998888


Q ss_pred             CCCcEECCCCE----ECCCCEEcccc
Q 007143          418 SFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       418 g~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      |+|++||++++    +|+++++...|
T Consensus       146 G~gavigagsVVtkdvp~~~iv~G~P  171 (190)
T COG0110         146 GEGAVIGAGSVVTKDVPPYGIVAGNP  171 (190)
T ss_pred             CCCcEEeeCCEEeCccCCCeEEeCCc
Confidence            88888888877    46666666544

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=98.56  E-value=2.7e-07  Score=89.73  Aligned_cols=106  Identities=18%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ..|.+||||+|.++|| .     +|+|++++|+|||+|+++.|....- .++|......++   |...       +  +.
T Consensus         3 ~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~-------g--~~   63 (192)
T COG0746           3 TPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF-------G--LP   63 (192)
T ss_pred             CCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc-------C--Cc
Confidence            4589999999999999 4     9999999999999999999999865 555555444332   3322       1  23


Q ss_pred             EEeCCCcc-C-HHHHHHHHHhcccccC-CEEEEeCce-ecch-hHHHHHHHHH
Q 007143          107 TIESHNII-S-AGDALRLIYEQNVIHG-DFVLISGDT-VSNM-LLTQALQEHK  154 (616)
Q Consensus       107 ~i~~~~~~-~-~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~-~l~~~l~~h~  154 (616)
                      ++...... | ++..+..   ....+. .|++++||+ +... -+..+....+
T Consensus        64 vv~D~~~~~GPL~Gi~~a---l~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~  113 (192)
T COG0746          64 VVPDELPGFGPLAGILAA---LRHFGTEWVLVLPCDMPFIPPELVERLLSAFK  113 (192)
T ss_pred             eeecCCCCCCCHHHHHHH---HHhCCCCeEEEEecCCCCCCHHHHHHHHHhhc
Confidence            34322222 3 3333332   222334 499999999 4444 4455554433

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.48  E-value=1e-06  Score=94.74  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ..+.+||||||.++||+.     +|+|+|++|+|||+|+++.+... +.+|+|+++...  ...+ ..        ..+.
T Consensus       173 ~~i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~--~~~~-~~--------~~v~  235 (369)
T PRK14490        173 VPLSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ--AEQY-RS--------FGIP  235 (369)
T ss_pred             CCceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch--hhHH-hh--------cCCc
Confidence            457899999999999985     99999999999999999999864 788888776542  2222 11        1133


Q ss_pred             EEeCCC-ccCHHHHHHHHHhccccc-CCEEEEeCce--ecchhHHHHHHH
Q 007143          107 TIESHN-IISAGDALRLIYEQNVIH-GDFVLISGDT--VSNMLLTQALQE  152 (616)
Q Consensus       107 ~i~~~~-~~~~gdalr~~~~~~~i~-~dfLlv~gD~--i~~~~l~~~l~~  152 (616)
                      ++.... ..|...++.....  ... ..+++++||+  +....+..++..
T Consensus       236 ~i~d~~~~~Gpl~gi~~al~--~~~~~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        236 LITDSYLDIGPLGGLLSAQR--HHPDAAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             EEeCCCCCCCcHHHHHHHHH--hCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence            443322 2353333333221  123 3499999999  555566777654

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=98.41  E-value=1.7e-06  Score=91.76  Aligned_cols=110  Identities=13%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +..+-+||||+|.++||+.     +|+|+|+.|+|||+|+++.|... +.+|+|+++...  .. +.   .+     ..+
T Consensus       158 ~~~i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~---~~-----~~v  220 (346)
T PRK14500        158 QTPLYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GT---PL-----ENL  220 (346)
T ss_pred             CCCceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hc---cc-----cCC
Confidence            3478899999999999985     99999999999999999988765 789988876431  11 11   01     013


Q ss_pred             EEEeC-CCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHH
Q 007143          106 KTIES-HNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH  153 (616)
Q Consensus       106 ~~i~~-~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h  153 (616)
                      .++.. ....|...+++..... .-...+|+++||+  +....+..+++.+
T Consensus       221 ~~I~D~~~~~GPlagI~aaL~~-~~~~~~lVl~cDmP~l~~~~l~~L~~~~  270 (346)
T PRK14500        221 PTLPDRGESVGPISGILTALQS-YPGVNWLVVACDLAYLNSETVEKLLAHY  270 (346)
T ss_pred             eEEeCCCCCCChHHHHHHHHHh-CCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence            34332 2235666667654432 1124589999999  4445677777754

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.35  E-value=6e-07  Score=91.31  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCc
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGV  403 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v  403 (616)
                      .+++.+.+.+.++.+|.|+++++||++|+|+.++.|.+|+|-.+..++.++.|..+.++.+++||.+++|. +++||++|
T Consensus       262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV  341 (371)
T KOG1322|consen  262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV  341 (371)
T ss_pred             cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence            45677888899999999999999999999999999999999999999999999999999999999999874 46667666


Q ss_pred             EECCCCEECCC
Q 007143          404 IMKAGAVLKPG  414 (616)
Q Consensus       404 ~Ig~~~~I~~g  414 (616)
                      .|.+.-.+..|
T Consensus       342 ~V~d~~~vn~g  352 (371)
T KOG1322|consen  342 IVADEDYVNEG  352 (371)
T ss_pred             EEecccccccc
Confidence            66666555543

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=98.33  E-value=7e-06  Score=81.49  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=75.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT  104 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~  104 (616)
                      +.+-+||+|+|+|+||+.   ..||.+++++|+|||+|+|+.+... .+++|+|++.. .-..+.++...     ..+-.
T Consensus         3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-----~~~~~   74 (230)
T COG1211           3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL-----SADKR   74 (230)
T ss_pred             ceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh-----ccCCe
Confidence            346799999999999997   8899999999999999999999997 57999999986 34455555531     01234


Q ss_pred             EEEEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCce---ecchhHHHHHH
Q 007143          105 VKTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQ  151 (616)
Q Consensus       105 i~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~---i~~~~l~~~l~  151 (616)
                      +.++.....  .+.-.+|..+..   -..+++|++==.   ++.-.|.++++
T Consensus        75 v~~v~GG~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~  123 (230)
T COG1211          75 VEVVKGGATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIE  123 (230)
T ss_pred             EEEecCCccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHH
Confidence            666653222  123333332211   124566665333   44556778874

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.29  E-value=1.8e-05  Score=86.89  Aligned_cols=165  Identities=15%  Similarity=0.267  Sum_probs=98.6

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC------------C-CcEEEEEcC-CcHHHH
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA------------G-VAEVFVFCC-AHSKQV   88 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~------------G-v~eI~vv~~-~~~~~i   88 (616)
                      +.++.+||||||.||||+   ...||+|+||+   |+||++++++.+...            + .-.++|+++ +..+.+
T Consensus       104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t  180 (482)
T PTZ00339        104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT  180 (482)
T ss_pred             cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence            346889999999999997   48899999994   899999999999875            1 225667766 557889


Q ss_pred             HHHHHhcCCCCCCCcEEEEEeC----------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeCc
Q 007143           89 IDYLENSEWFSQPNFTVKTIES----------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGD  139 (616)
Q Consensus        89 ~~~l~~~~~~~~~~~~i~~i~~----------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD  139 (616)
                      ++|+++..|.....-.|.+..+                      ..+-|-|+..+.+....++.     + . +.+...|
T Consensus       181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  260 (482)
T PTZ00339        181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID  260 (482)
T ss_pred             HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence            9999875443211112221111                      12247888888776554442     2 2 5555667


Q ss_pred             ee-cchhHHHHHHHHHHhhccCCC-ceEEEEEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          140 TV-SNMLLTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       140 ~i-~~~~l~~~l~~h~~~~~~d~~-a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      .+ ...---.++-.+..++    . .+|+.+++. .+.     .+-|    ++......-.++.|.|.++
T Consensus       261 N~L~k~~DP~flG~~~~~~----~~~~~~kvvk~-~~~-----EkvG----~~~~~~g~~~vvEYsEi~~  316 (482)
T PTZ00339        261 NILAKVLDPEFIGLASSFP----AHDVLNKCVKR-EDD-----ESVG----VFCLKDYEWQVVEYTEINE  316 (482)
T ss_pred             cccccccCHHHhHHHHHCC----chhheeeeecC-CCC-----Ccee----EEEEeCCcccEEEEeccCh
Confidence            64 3232233444455432    2 345545533 222     1223    4433222336788888654

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.27  E-value=5.2e-06  Score=77.23  Aligned_cols=90  Identities=21%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             ECCCCEECC-CCEEe--ceEECCCCEECCCCEEece--EECCCC-----EECC-----CcEEeceEECCCcEECCCCEEC
Q 007143          348 IGYGTKIGS-NSKIS--DSVIGEGCTIGSNVLIEGS--YIWDNV-----IIED-----GCELRHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       348 Ig~~~~Ig~-~~~I~--~s~IG~~~~Ig~~~~I~~s--~I~~~v-----~Ig~-----~~~I~~siIg~~v~Ig~~~~I~  412 (616)
                      ||+++.|+. .+.+.  .+.||++|.|+++|.|...  .-..+.     .+..     ...........++.||++|+|+
T Consensus         4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig   83 (145)
T cd03349           4 VGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIG   83 (145)
T ss_pred             EeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEEC
Confidence            444444444 33332  5678888888888887432  000100     0111     1122344456689999999999


Q ss_pred             CCCEECCCcEECCCCEECCCCEEcc
Q 007143          413 PGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       413 ~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .+|+|..+++||++++|+++++|..
T Consensus        84 ~~~~i~~gv~Ig~~~vIgags~V~~  108 (145)
T cd03349          84 HGATILPGVTIGDGAVIAAGAVVTK  108 (145)
T ss_pred             CCCEEeCCCEECCCCEECCCCEEcc
Confidence            9999999999999999999999986

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.21  E-value=2.6e-06  Score=82.05  Aligned_cols=48  Identities=25%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       392 ~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      |--++-.||+||+||.|++|.+++.||+|++|++|++    ||+++.....|
T Consensus       196 ~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnP  247 (269)
T KOG4750|consen  196 SGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNP  247 (269)
T ss_pred             ccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCceecCCc
Confidence            3445568899999999999988888888888888887    56666665544

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.21  E-value=1e-05  Score=78.51  Aligned_cols=76  Identities=33%  Similarity=0.434  Sum_probs=61.2

Q ss_pred             ceEECCCCEECCCCEE---eceEECCCCEECCCcEEec--------------eEECCCcEECCCCEECCCCEECCCcEEC
Q 007143          362 DSVIGEGCTIGSNVLI---EGSYIWDNVIIEDGCELRH--------------VIVCDGVIMKAGAVLKPGVVLSFKVVIG  424 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I---~~s~I~~~v~Ig~~~~I~~--------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig  424 (616)
                      +..||.+|.|+.+|.+   .+..|++++.++.+|.|..              ......++||++|+|+.+++|.+||+||
T Consensus        67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG  146 (190)
T COG0110          67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG  146 (190)
T ss_pred             ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence            4567777777777775   2556888888888887742              1123469999999999999999999999


Q ss_pred             CCCEECCCCEEcc
Q 007143          425 ERFVVPAHSKVSL  437 (616)
Q Consensus       425 ~~~~v~~~~~v~~  437 (616)
                      +|++|+++++|+.
T Consensus       147 ~gavigagsVVtk  159 (190)
T COG0110         147 EGAVIGAGSVVTK  159 (190)
T ss_pred             CCcEEeeCCEEeC
Confidence            9999999999987

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.19  E-value=5.8e-06  Score=95.68  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143          362 DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS  433 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~  433 (616)
                      ...||+||.|+++|.|.+..+..+     ..++...+||++|+||.+++|.+|++||++++|++++.|..|.
T Consensus       131 li~IG~~~~I~~~v~l~~~~~~~~-----~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~  197 (695)
T TIGR02353       131 LLTIGAGTIVRKEVMLLGYRAERG-----RLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQ  197 (695)
T ss_pred             ceEECCCCEECCCCEEEcccCCCC-----ceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCc
Confidence            567888888888888865433222     2234455778888888888888888888888888887765544

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.18  E-value=6.9e-06  Score=95.03  Aligned_cols=69  Identities=23%  Similarity=0.430  Sum_probs=49.6

Q ss_pred             eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      +.||++|.|+++|.|... ..++..+    .+.+++||++|+||++++|.+|++||++++||++++++.+..+.
T Consensus       617 v~IGd~~~I~~~~~i~~h-~~~~~~~----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp  685 (695)
T TIGR02353       617 VTIGDDSTLNEGSVIQTH-LFEDRVM----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVP  685 (695)
T ss_pred             eEECCCCEECCCCEEEec-ccccccc----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccC
Confidence            588999999998888643 2222222    34566778888888888888888888888888888777665554

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=97.98  E-value=2.5e-05  Score=74.50  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             ceEEcCCcEECCCCEEC--CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCC
Q 007143          327 GMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG  402 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~  402 (616)
                      ++-+++++.|+++..|.  ..++||+.+.||++|.|. +++||..-.=   +--.+-.|+++|.||.++.| .+..||++
T Consensus        67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~---~g~RhPtIg~~V~IGagAkILG~I~IGd~  143 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKE---SGKRHPTIGNGVYIGAGAKILGNIEIGDN  143 (194)
T ss_pred             ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCc---CCCCCCccCCCeEECCCCEEEcceEECCC
Confidence            55678888888888775  367888888777776553 4444443221   11235678888888888865 45566666


Q ss_pred             cEECCCCEECC
Q 007143          403 VIMKAGAVLKP  413 (616)
Q Consensus       403 v~Ig~~~~I~~  413 (616)
                      +.||++++|..
T Consensus       144 akIGA~sVVlk  154 (194)
T COG1045         144 AKIGAGSVVLK  154 (194)
T ss_pred             CEECCCceEcc
Confidence            66666666553

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.83  E-value=1.9e-05  Score=71.32  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=76.0

Q ss_pred             eeecceEEcCCcEECCCCEEC---CCcEECCCCEECCCCEEec--------------eEECCCCEECCCCEEeceEECCC
Q 007143          323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD--------------SVIGEGCTIGSNVLIEGSYIWDN  385 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~--------------s~IG~~~~Ig~~~~I~~s~I~~~  385 (616)
                      ..|+.+.+++++.++|.+++.   +..+||+++.|.+.++|.+              .+||.+....-+|......+|++
T Consensus        22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~  101 (190)
T KOG4042|consen   22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR  101 (190)
T ss_pred             ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence            456788888888888888775   5789999999999888854              45666666555555555566666


Q ss_pred             CEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .+|+           ..+.+|+|+.+..||+||.+|+|-..-.+|+++.|-.
T Consensus       102 NVie-----------skayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYg  142 (190)
T KOG4042|consen  102 NVIE-----------SKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYG  142 (190)
T ss_pred             ceEe-----------eeeEecCCcEEcCCceeccceEEecccccCCcceEEc
Confidence            5554           4555566777777777777888888888888888865

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=97.78  E-value=0.00055  Score=67.69  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=73.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~  109 (616)
                      |||.|=+.++|+-      -|.|+|++|+|||+|+++.+.+++ +++|+|.+..  +.+.+.+.+.      +..+.+..
T Consensus         2 aiIpAR~gS~rlp------~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~------g~~v~~~~   67 (217)
T PF02348_consen    2 AIIPARGGSKRLP------GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY------GAKVIFRR   67 (217)
T ss_dssp             EEEEE-SSSSSST------TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT------TSEEEE--
T ss_pred             EEEecCCCCCCCC------cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc------CCeeEEcC
Confidence            7888888888887      599999999999999999999984 7888777754  5566666552      34565554


Q ss_pred             CCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhh
Q 007143          110 SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERK  157 (616)
Q Consensus       110 ~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~  157 (616)
                      .....++......+.....-..+ ++.+.||.  +....+..+++.+++..
T Consensus        68 ~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~  118 (217)
T PF02348_consen   68 GSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN  118 (217)
T ss_dssp             TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred             hhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence            43333333222222111111233 78888898  45568899999888864

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00018  Score=69.66  Aligned_cols=67  Identities=28%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .+||+-.+||.+|.     |+.++++|.  +-+++--.. =.||+|+.|+.|+.|-.|++||+|++|++|++|..
T Consensus       169 vvigeTAvvg~~vS-----ilH~Vtlgg--tgk~~gdrh-P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k  235 (269)
T KOG4750|consen  169 VVIGETAVVGDNVS-----ILHPVTLGG--TGKGSGDRH-PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK  235 (269)
T ss_pred             eeecceeEecccee-----eecceeecc--ccccccccC-CcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence            35555555554433     344444442  223333333 38999999999999999999999999999999975

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.41  E-value=0.00054  Score=66.67  Aligned_cols=74  Identities=24%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          355 GSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       355 g~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      |+++.++-.++|+...+|+++.|.+.++..+++|+.+|.+. +.+++.++.||.++.|....++...-.||+++.
T Consensus        26 G~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~  100 (277)
T COG4801          26 GKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVI  100 (277)
T ss_pred             cccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceE
Confidence            33333444455666666666666666666666666666553 344445555555555554333333333343333

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.0069  Score=58.81  Aligned_cols=211  Identities=16%  Similarity=0.196  Sum_probs=123.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      ..-|||+|-|.+.|..      -|-+.+++|+|||.|+++.+..++.=+-+|+.+. .+.|.+.-.+.      |.++.+
T Consensus         3 ~~iAiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD-s~~Il~~A~~y------gak~~~   69 (228)
T COG1083           3 KNIAIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD-SEEILEEAKKY------GAKVFL   69 (228)
T ss_pred             ceEEEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC-cHHHHHHHHHh------Cccccc
Confidence            3568999988888876      5999999999999999999999985444444443 45555544431      223322


Q ss_pred             Ee-----CCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007143          108 IE-----SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH  179 (616)
Q Consensus       108 i~-----~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~  179 (616)
                      ..     ++...+.-.++..+.... +..+ .+++.+-.  ....+|+.+++.+.+..   .+++++.+-.+..|.    
T Consensus        70 ~Rp~~LA~D~ast~~~~lh~le~~~-~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~---~~sl~sa~e~e~~p~----  141 (228)
T COG1083          70 KRPKELASDRASTIDAALHALESFN-IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ---YDSLFSAVECEHHPY----  141 (228)
T ss_pred             cCChhhccCchhHHHHHHHHHHHhc-cccCeeEEeccCccccchhHHHHHHHHHhcCC---CcceEEEeecccchH----
Confidence            21     222223323444433322 3334 66666544  78889999999998764   456666554443321    


Q ss_pred             ccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEecccc-ceeEeeCHhHHhhhhcCCChhhHH
Q 007143          180 QSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQD-CYIDICSPEVLSLFTDNFDYQHLR  258 (616)
Q Consensus       180 ~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d-~gIyIcsp~vl~lf~dnfd~q~lr  258 (616)
                        |.      +..  +.+.+..+.+.|........+++.             +.+ .-|||.+..+|   .++       
T Consensus       142 --k~------f~~--~~~~~~~~~~~~~~~~rrQ~Lpk~-------------Y~~NgaiYi~~~~~l---~e~-------  188 (228)
T COG1083         142 --KA------FSL--NNGEVKPVNEDPDFETRRQDLPKA-------------YRENGAIYINKKDAL---LEN-------  188 (228)
T ss_pred             --HH------HHh--cCCceeecccCCccccccccchhh-------------hhhcCcEEEehHHHH---hhc-------
Confidence              21      111  235666666655422233333332             222 34888877644   221       


Q ss_pred             HHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          259 RHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       259 ~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      +-         .-+.....|++++.-..+|.+.+++.-+..-+
T Consensus       189 ~~---------~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~  222 (228)
T COG1083         189 DC---------FFIPNTILYEMPEDESIDIDTELDLEIAENLI  222 (228)
T ss_pred             Cc---------eecCCceEEEcCcccccccccHHhHHHHHHHh
Confidence            00         12345566778766778899998887665443

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.25  E-value=0.00018  Score=49.86  Aligned_cols=33  Identities=39%  Similarity=0.608  Sum_probs=16.9

Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      +.|+++++|++++.|.++++||++++|+++++|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            344555555555555555555555555555444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.23  E-value=0.00045  Score=47.41  Aligned_cols=29  Identities=24%  Similarity=0.521  Sum_probs=10.5

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      ||++|+||.++.|  |+.||++|.|++|++|
T Consensus         4 IG~~~~ig~~~~i--gi~igd~~~i~~g~~I   32 (34)
T PF14602_consen    4 IGDNCFIGANSTI--GITIGDGVIIGAGVVI   32 (34)
T ss_dssp             E-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred             ECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence            3444444444444  2444444444444433

...

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=97.12  E-value=0.011  Score=61.43  Aligned_cols=160  Identities=15%  Similarity=0.233  Sum_probs=98.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCc-HHHHHHHHHhcCCCCC
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFSQ  100 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~~  100 (616)
                      ++-+|+||||.||||+-   +.||.|+||. +++++++.++.+...    |+. -.+|.++.. .+...+|+++..+. .
T Consensus         3 kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~-~   78 (300)
T cd00897           3 KLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGV-N   78 (300)
T ss_pred             cEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCC-c
Confidence            46789999999999974   7899999996 599999999998763    332 466777765 56788898874331 1


Q ss_pred             CCcEEEEEe------------------------CCCccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhHHHH
Q 007143          101 PNFTVKTIE------------------------SHNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQA  149 (616)
Q Consensus       101 ~~~~i~~i~------------------------~~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~~  149 (616)
                        ..|.+..                        .-.+-|-|+..+.+....++.     + . +.+.+.|.+...-=-.+
T Consensus        79 --~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~  156 (300)
T cd00897          79 --VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI  156 (300)
T ss_pred             --cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH
Confidence              1111111                        012247788877776555542     2 2 67777898654322235


Q ss_pred             HHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          150 LQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       150 l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      +-.|..+     ++.+++ ++.+..+.     .+-|    +++.....-+|+.|.+.|.
T Consensus       157 lg~~~~~-----~~~~~~evv~Kt~~d-----ek~G----~l~~~~g~~~vvEyse~p~  201 (300)
T cd00897         157 LNHMVDN-----KAEYIMEVTDKTRAD-----VKGG----TLIQYEGKLRLLEIAQVPK  201 (300)
T ss_pred             HHHHHhc-----CCceEEEEeecCCCC-----Cccc----EEEEECCEEEEEEeccCCH
Confidence            5555553     466665 34443332     1323    3433223456888888764

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.06  E-value=0.082  Score=58.17  Aligned_cols=160  Identities=14%  Similarity=0.230  Sum_probs=95.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCc-HHHHHHHHHhcCCCCC
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFSQ  100 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~~  100 (616)
                      ++-+|+||||.||||+-   ..||.|+|+. |+++++.+++.+...    |+. -.+|.++.. .+..++|+++..+.  
T Consensus        79 k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~--  153 (469)
T PLN02474         79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS--  153 (469)
T ss_pred             cEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC--
Confidence            56789999999999996   7899999995 599999998887653    433 346777754 56688888874432  


Q ss_pred             CCcEEEEEeC------------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhHHHH
Q 007143          101 PNFTVKTIES------------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQA  149 (616)
Q Consensus       101 ~~~~i~~i~~------------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~~  149 (616)
                       +..|++..+                        -.+-|-||..+.+....++.     + . +.+.+.|.+...-=-.+
T Consensus       154 -~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~  232 (469)
T PLN02474        154 -NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKI  232 (469)
T ss_pred             -ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHH
Confidence             112222211                        01246778777665544432     2 2 66677788644322235


Q ss_pred             HHHHHHhhccCCCceEEEEEe-cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          150 LQEHKERKKKDNNAVMTMIIK-KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       150 l~~h~~~~~~d~~a~mT~v~~-~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      +..|...     ++.++|=+. +..+.     .+-|   .++..| ..-+|+.|.+.|.
T Consensus       233 lg~~~~~-----~~e~~~ev~~Kt~~d-----~kgG---~l~~~d-gk~~lvEysqvp~  277 (469)
T PLN02474        233 LNHLIQN-----KNEYCMEVTPKTLAD-----VKGG---TLISYE-GKVQLLEIAQVPD  277 (469)
T ss_pred             HHHHHhc-----CCceEEEEeecCCCC-----CCcc---EEEEEC-CEEEEEEEecCCH
Confidence            5555553     355554333 22221     1222   123333 3456888888764

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.01  E-value=0.00072  Score=46.42  Aligned_cols=12  Identities=50%  Similarity=1.005  Sum_probs=3.8

Q ss_pred             ECCCCEECCCCE
Q 007143          365 IGEGCTIGSNVL  376 (616)
Q Consensus       365 IG~~~~Ig~~~~  376 (616)
                      ||++|.||.+|.
T Consensus         4 IG~~~~ig~~~~   15 (34)
T PF14602_consen    4 IGDNCFIGANST   15 (34)
T ss_dssp             E-TTEEE-TT-E
T ss_pred             ECCCEEECcccc
Confidence            444444444433

...

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.00  E-value=0.00041  Score=48.05  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=14.8

Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      ++||++++|++++.|..+++||++++|++++.|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            344444444444444444444444444444443

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=96.99  E-value=0.0023  Score=62.33  Aligned_cols=91  Identities=10%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-eEE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIV  399 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siI  399 (616)
                      +.....+....++.|++.+.+ ...++|+...+|+++.|...+++.+|+|+.+|.+. |.....++.||.++.|++ -++
T Consensus        11 r~e~~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v   89 (277)
T COG4801          11 RVEEAIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTV   89 (277)
T ss_pred             ceeeeeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEE
Confidence            344556667777888888888 45578888888999999888888999999988884 666677777777777743 344


Q ss_pred             CCCcEECCCCEECC
Q 007143          400 CDGVIMKAGAVLKP  413 (616)
Q Consensus       400 g~~v~Ig~~~~I~~  413 (616)
                      ...-.||+++.|..
T Consensus        90 ~gdLdig~dV~Ieg  103 (277)
T COG4801          90 IGDLDIGADVIIEG  103 (277)
T ss_pred             ecccccccceEEec
Confidence            44555666666653

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=96.98  E-value=0.0017  Score=62.37  Aligned_cols=91  Identities=13%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             CCcccceeCC--eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhc
Q 007143           49 RPKVLLPLVN--VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ  126 (616)
Q Consensus        49 ~PK~Llpi~g--~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~  126 (616)
                      .+|+|+++.|  +|||+|+++.+. ..+.+|+|+++.+. .+    ..        ..++++. +...+.|.......+.
T Consensus         3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~--------~~~~~i~-d~~~g~gpl~~~~~gl   67 (178)
T PRK00576          3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE--------LPAPVLR-DELRGLGPLPATGRGL   67 (178)
T ss_pred             CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc--------CCCCEec-cCCCCCCcHHHHHHHH
Confidence            4899999999  999999999876 46899999997542 11    11        1223343 2223334333222111


Q ss_pred             c---cccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143          127 N---VIHGD-FVLISGDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       127 ~---~i~~d-fLlv~gD~--i~~~~l~~~l~~h~  154 (616)
                      .   .-..+ +++++||+  |....+..+++.++
T Consensus        68 ~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~  101 (178)
T PRK00576         68 RAAAEAGARLAFVCAVDMPYLTVELIDDLARPAA  101 (178)
T ss_pred             HHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            0   11234 99999999  55556777776543

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=96.84  E-value=0.038  Score=61.06  Aligned_cols=198  Identities=11%  Similarity=0.190  Sum_probs=112.3

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------------CC-cEEEEEcCCc-HH
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------------GV-AEVFVFCCAH-SK   86 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------------Gv-~eI~vv~~~~-~~   86 (616)
                      ..++-+|+||||.||||+-   ..||.|++|+   ++++++...+.+...              ++ --.+|.++.. .+
T Consensus       114 ~gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~  190 (493)
T PLN02435        114 EGKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE  190 (493)
T ss_pred             cCCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence            3456788999999999985   7899999885   799999999987542              11 1357788855 67


Q ss_pred             HHHHHHHhcCCCCCCCcEEEEEeC---------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeC
Q 007143           87 QVIDYLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISG  138 (616)
Q Consensus        87 ~i~~~l~~~~~~~~~~~~i~~i~~---------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~g  138 (616)
                      ..++|+++..+.....-.|++..+                     ..+-|-|+..+.+....++.     + . +.+...
T Consensus       191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v  270 (493)
T PLN02435        191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGV  270 (493)
T ss_pred             HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence            788999874432111112333221                     12358899888776655543     2 2 455555


Q ss_pred             cee-cchhHHHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEe--CCCCeEEEeeecCCCCCcceE
Q 007143          139 DTV-SNMLLTQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAID--PNTKQLLYYEDKADHSKGTIC  214 (616)
Q Consensus       139 D~i-~~~~l~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id--~~~~rvl~~~e~p~~~~~~~~  214 (616)
                      |.+ ...---.++-.+..+     ++.+.+ ++++..|.     .+-|    ++...  ...-.|+.|.+.+.       
T Consensus       271 DN~L~~~~DP~flG~~~~~-----~~d~~~kVv~K~~~~-----EkvG----~i~~~~~~g~~~vvEYsEl~~-------  329 (493)
T PLN02435        271 DNALVRVADPTFLGYFIDK-----GVASAAKVVRKAYPQ-----EKVG----VFVRRGKGGPLTVVEYSELDQ-------  329 (493)
T ss_pred             ccccccccCHHHHHHHHhc-----CCceEEEeeecCCCC-----Ccee----EEEEecCCCCEEEEEeccCCH-------
Confidence            663 333333445555553     355444 34343322     1223    44432  12344778877653       


Q ss_pred             eehHhhhc-CC-ceEEEeccccceeEeeCHhHHhhhhc
Q 007143          215 LDKMLLAE-NP-SISLHNDKQDCYIDICSPEVLSLFTD  250 (616)
Q Consensus       215 l~~~l~~~-~~-~~~ir~dl~d~gIyIcsp~vl~lf~d  250 (616)
                         ++-.. .+ .=.+.+...+..+++||-++|.-+.+
T Consensus       330 ---~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~  364 (493)
T PLN02435        330 ---AMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN  364 (493)
T ss_pred             ---HHHhccCccccccccchhhHHHhhccHHHHHHHHH
Confidence               11110 00 01233444455667788888876654

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=96.75  E-value=0.0047  Score=67.43  Aligned_cols=51  Identities=20%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             CEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCC
Q 007143          352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDG  402 (616)
Q Consensus       352 ~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~  402 (616)
                      +.+.+++.|-+|+|..+|.||++++|++|.|+.++.||.+|.|.++-+...
T Consensus       274 ~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~  324 (414)
T PF07959_consen  274 SDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW  324 (414)
T ss_pred             cccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence            445566666777777777777777777777777777777777766554443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.022  Score=55.61  Aligned_cols=110  Identities=22%  Similarity=0.354  Sum_probs=75.6

Q ss_pred             eEEEEEeCCCC-CCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCc--HHHHHHHHHhcCCCCCCCcE
Q 007143           29 LQAILLADSFT-TKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAH--SKQVIDYLENSEWFSQPNFT  104 (616)
Q Consensus        29 l~aVILA~g~~-~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~--~~~i~~~l~~~~~~~~~~~~  104 (616)
                      +-++|+.+-.| +|+.      -|.|+||++.|||+|+|+.+.++. ..+++|.++..  .+.++.+..+.      |  
T Consensus         3 ~I~~IiQARmgStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~------G--   68 (241)
T COG1861           3 MILVIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH------G--   68 (241)
T ss_pred             cEEEEeeecccCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc------C--
Confidence            45667777665 5554      599999999999999999999984 67898888743  45677777652      2  


Q ss_pred             EEEEeCCCccCHHHHHHHH-HhcccccCC-EEEEeCce-ecch-hHHHHHHHHHHh
Q 007143          105 VKTIESHNIISAGDALRLI-YEQNVIHGD-FVLISGDT-VSNM-LLTQALQEHKER  156 (616)
Q Consensus       105 i~~i~~~~~~~~gdalr~~-~~~~~i~~d-fLlv~gD~-i~~~-~l~~~l~~h~~~  156 (616)
                      +.+..    .+..++|.-+ .+......+ ++=+.||- +.+. -+..+++.|.+.
T Consensus        69 ~~vfr----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~  120 (241)
T COG1861          69 FYVFR----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEK  120 (241)
T ss_pred             eeEec----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence            22332    2445666544 233334445 77789998 4444 457788888875

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=96.65  E-value=0.0073  Score=71.53  Aligned_cols=135  Identities=16%  Similarity=0.085  Sum_probs=73.8

Q ss_pred             CEEEEeCceecchh--HHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeCCC-CeEEEeeecCCC
Q 007143          132 DFVLISGDTVSNML--LTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT-KQLLYYEDKADH  208 (616)
Q Consensus       132 dfLlv~gD~i~~~~--l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~-~rvl~~~e~p~~  208 (616)
                      ..||.+||++..++  +..           -+++.+..+.-...+.   -.+..|    ||+.|.++ ++|-.+-.||..
T Consensus       154 g~li~~gDv~~~f~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~HG----Vfv~~~~~~~~~~~~LqKps~  215 (974)
T PRK13412        154 HTLIASGDVYIRSEQPLQD-----------IPEADVVCYGLWVDPS---LATNHG----VFVSSRKSPERLDFMLQKPSL  215 (974)
T ss_pred             ceEEEecchhhhccccccC-----------CCccCeEEEEeccChh---hccCce----EEEeCCCChHHHHHHhcCCCH
Confidence            58999999754332  111           1223333333333332   223344    88888653 677778788752


Q ss_pred             CCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC-C-------ChhhHHHHhhhhhhh------ccccCce
Q 007143          209 SKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-F-------DYQHLRRHFVKGLLL------DDIMGYK  274 (616)
Q Consensus       209 ~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn-f-------d~q~lr~dfv~~~l~------~~i~g~~  274 (616)
                      .  .+   -.+...      ..-|+|.|||+++....+.+..- +       -+-++-.||+..+=.      .++++.+
T Consensus       216 e--el---~a~~~~------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~  284 (974)
T PRK13412        216 E--EL---GGLSKT------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALS  284 (974)
T ss_pred             H--HH---HhhhcC------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccc
Confidence            1  11   112222      35588999999999988865421 1       012334577654321      1455556


Q ss_pred             EEEEEccccchhhccChhhHH
Q 007143          275 IFTHEIHSSYAARIDNYRSYD  295 (616)
Q Consensus       275 I~~~~~~~~y~~~V~s~~sY~  295 (616)
                      +....+++.--..++|-+.|.
T Consensus       285 ~~i~~L~~~~F~H~GTs~E~l  305 (974)
T PRK13412        285 VAILPLPGGEFYHYGTSRELI  305 (974)
T ss_pred             eEEEEcCCceeEEecCcHHHh
Confidence            666666655445566665555

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=96.34  E-value=0.012  Score=61.40  Aligned_cols=66  Identities=18%  Similarity=0.365  Sum_probs=52.9

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCccccee---CCeehHHHHHHHHHHCC---------CcEEEEEcCCc-HHHHHHHHHhcC
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEAAG---------VAEVFVFCCAH-SKQVIDYLENSE   96 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi---~g~PlI~y~Le~L~~~G---------v~eI~vv~~~~-~~~i~~~l~~~~   96 (616)
                      -+|+||+|.||||+-   +.||.++||   .|++++++.++.+....         .--.+|.++.. .+..++++++..
T Consensus         2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~   78 (315)
T cd06424           2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN   78 (315)
T ss_pred             EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence            478999999999985   789999999   47999999999987632         12467888854 677899998766


Q ss_pred             CC
Q 007143           97 WF   98 (616)
Q Consensus        97 ~~   98 (616)
                      |.
T Consensus        79 yF   80 (315)
T cd06424          79 YF   80 (315)
T ss_pred             cc
Confidence            53

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PLN02830 UDP-sugar pyrophosphorylase

Probab=96.13  E-value=0.16  Score=57.80  Aligned_cols=135  Identities=15%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------C----CcEEEEEcCCc-HHHHHHH
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------G----VAEVFVFCCAH-SKQVIDY   91 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------G----v~eI~vv~~~~-~~~i~~~   91 (616)
                      ++-+|+||+|.||||+-   ..||.++|++   |++++++.++.+...        +    .--.+|.++.. .+...+|
T Consensus       128 kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~  204 (615)
T PLN02830        128 NAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKL  204 (615)
T ss_pred             cEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHH
Confidence            56789999999999985   6799999983   799999999998664        1    12467888855 6778899


Q ss_pred             HHhcCCCCCCCcEEEE--------Ee--------CC--------CccCHHHHHHHHHhccccc-----C-CE-EEEeCce
Q 007143           92 LENSEWFSQPNFTVKT--------IE--------SH--------NIISAGDALRLIYEQNVIH-----G-DF-VLISGDT  140 (616)
Q Consensus        92 l~~~~~~~~~~~~i~~--------i~--------~~--------~~~~~gdalr~~~~~~~i~-----~-df-Llv~gD~  140 (616)
                      +++..|.....-.|++        +.        ..        .+.|-|+..+.+....++.     + .+ .+...|.
T Consensus       205 ~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN  284 (615)
T PLN02830        205 LERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTN  284 (615)
T ss_pred             HHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccc
Confidence            9886663221112222        11        11        2347888888776665553     2 24 4444455


Q ss_pred             -ecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143          141 -VSNMLLTQALQEHKERKKKDNNAVMTMIIK  170 (616)
Q Consensus       141 -i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~  170 (616)
                       +.....-.++-.+..+     ++.|.+-+.
T Consensus       285 ~L~~~Adp~flG~~~~~-----~~d~~~kvv  310 (615)
T PLN02830        285 GLVFKAIPAALGVSATK-----GFDMNSLAV  310 (615)
T ss_pred             hhhhcccHHHhHHHHhc-----CCceEEEEE
Confidence             3333335666666654     355555433

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.098  Score=56.83  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCcHHHHHHHHHh
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAHSKQVIDYLEN   94 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~~~~i~~~l~~   94 (616)
                      ..++-+|+||||.|+||+-   ..||.|++|. |+++++.+.+.+..+    +++ ..+|.++...++-..|+..
T Consensus       103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~  174 (472)
T COG4284         103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKS  174 (472)
T ss_pred             cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhh
Confidence            5568899999999999986   6799999999 899999999987765    433 3566676544444444433

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=95.52  E-value=0.32  Score=53.21  Aligned_cols=161  Identities=20%  Similarity=0.324  Sum_probs=94.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHH----CCCc-EEEEEcCCc-HHHHHHHHHhcCCCC
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEA----AGVA-EVFVFCCAH-SKQVIDYLENSEWFS   99 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~----~Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~   99 (616)
                      .++-+|+||||.||||+-   ..||.|+||. ++.+++..++.+..    .|+. -.+|.++.. .+.+++|+++ ....
T Consensus        55 ~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg~  130 (420)
T PF01704_consen   55 GKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFGL  130 (420)
T ss_dssp             TCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCGS
T ss_pred             CCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcCC
Confidence            357889999999999985   7899999996 58999999988876    2433 467777754 6778888887 2221


Q ss_pred             CCCcEEEE--------Ee--------CCC----------ccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhH
Q 007143          100 QPNFTVKT--------IE--------SHN----------IISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLL  146 (616)
Q Consensus       100 ~~~~~i~~--------i~--------~~~----------~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l  146 (616)
                      ...  |.+        +.        .+.          +-|-||..+.+....++.     + . +.+.+.|.+...-=
T Consensus       131 ~~~--v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D  208 (420)
T PF01704_consen  131 DVD--VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD  208 (420)
T ss_dssp             SCC--EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred             Ccc--eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence            111  211        11        111          238888888776555442     2 3 67778898554422


Q ss_pred             HHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          147 TQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       147 ~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      -.++-.|..+     ++.+.| ++.+..+.     .+-|    ++......-+|+.|.+.|.
T Consensus       209 p~~lG~~~~~-----~~~~~~evv~Kt~~d-----ek~G----vl~~~~G~~~vvEysqip~  256 (420)
T PF01704_consen  209 PVFLGYMIEK-----NADFGMEVVPKTSPD-----EKGG----VLCRYDGKLQVVEYSQIPK  256 (420)
T ss_dssp             HHHHHHHHHT-----T-SEEEEEEE-CSTT-----TSSE----EEEEETTEEEEEEGGGS-H
T ss_pred             HHHHHHHHhc-----cchhheeeeecCCCC-----Ccee----EEEEeCCccEEEEeccCCH
Confidence            3456666554     344433 33333322     1222    4433323456777777654

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=95.52  E-value=0.062  Score=52.18  Aligned_cols=85  Identities=15%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEe
Q 007143           59 VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLIS  137 (616)
Q Consensus        59 ~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~  137 (616)
                      +|||+|+++.+..+++.+++|++++  +.+.+++..        ..+.++.+.. .|++.+++.......-. +.++++.
T Consensus        30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~--------~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~   98 (195)
T TIGR03552        30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN--------LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILM   98 (195)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh--------cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEe
Confidence            7999999999999988888888774  445555433        1244555443 38899988664331111 2399999


Q ss_pred             Cce--ecchhHHHHHHHHH
Q 007143          138 GDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       138 gD~--i~~~~l~~~l~~h~  154 (616)
                      ||+  +....+..+++.++
T Consensus        99 ~D~P~l~~~~i~~l~~~~~  117 (195)
T TIGR03552        99 ADLPLLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCCCCCHHHHHHHHHhcc
Confidence            999  66668888887653

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=94.70  E-value=0.066  Score=58.53  Aligned_cols=71  Identities=11%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143          363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      +.....+.+.+.+.|.+|+|..++.+|++++|++|.|+.++.||++|+|. |+-+..... .++..||.+..+
T Consensus       268 ~~~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~~~-~~~~~lpd~~~~  338 (414)
T PF07959_consen  268 SPATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSWSI-LPGLTLPDGVCL  338 (414)
T ss_pred             cccccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccccc-ccCcccCCceEE
Confidence            33445677788899999999999999999999999999999999999998 665554432 233356666666

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=90.92  E-value=1.5  Score=38.78  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143           53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI  129 (616)
Q Consensus        53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i  129 (616)
                      ++|..| .+++.++++.+...+  ..+++|+.....+...+++......   ...+..+......|.+.++.....  ..
T Consensus         2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~--~~   76 (156)
T cd00761           2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DPRVIRVINEENQGLAAARNAGLK--AA   76 (156)
T ss_pred             EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CCCeEEEEecCCCChHHHHHHHHH--Hh
Confidence            456655 699999999999997  7889888887666666666542111   123445555667788888775433  23


Q ss_pred             cCC-EEEEeCceecchh-HHHHHHHHH
Q 007143          130 HGD-FVLISGDTVSNML-LTQALQEHK  154 (616)
Q Consensus       130 ~~d-fLlv~gD~i~~~~-l~~~l~~h~  154 (616)
                      ..+ ++++.+|.+...+ +..++..+.
T Consensus        77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~  103 (156)
T cd00761          77 RGEYILFLDADDLLLPDWLERLVAELL  103 (156)
T ss_pred             cCCEEEEECCCCccCccHHHHHHHHHh
Confidence            566 8888999977665 444434433

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	616
2ggo_A	401	Crystal Structure Of Glucose-1-Phosphate Thymidylyl		1e-04
1jyk_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		2e-04
1jyl_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		2e-04
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		2e-04
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		2e-04
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		4e-04
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		5e-04
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		6e-04
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		7e-04
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		7e-04
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		7e-04
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		8e-04

>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ 87
          ++A +LA     +  PIT  RPK  +P+++ P+I Y + +L   G+ ++ V   + +K+
Sbjct: 1  MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKE 59

>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
          ++AI+LA    T+ RP+T   PK L+ +   P+I Y + +L+  G+ ++ +    + K+ 
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDI-IIIVGYLKEQ 84
Query: 89 IDYLE 93
           DYL+
Sbjct: 85 FDYLK 89

>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
          ++AI+LA    T+ RP+T   PK L+ +   P+I Y + +L+  G+ ++ +    + K+ 
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDI-IIIVGYLKEQ 84
Query: 89 IDYLE 93
           DYL+
Sbjct: 85 FDYLK 89

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
             L  + S+W    N   K   S + ++      +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQW--GLNLQYKVSPSPDGLAQA---FIIGEEFIGHDDCALVLGDNI 113

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
             L  + S+W    N   K   S + ++      +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQW--GLNLQYKVDPSPDGLAQA---FIIGEEFIGHDDCALVLGDNI 113

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   + LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
             L  + S+W     + V+         + D L    +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   + LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
             L  + S+W     + V+         + D L    +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   + LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALR---LIYEQNVIHGDFVLISGDTV 141
             L  + S+W     + V+         + D L    +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQ--------PSPDGLAQAFIIGEEFIGHDDCALVLGDNI 113

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
             L  + S+W     + V+     +    II      GD   L+   N+ +G
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
             L  + S+W     + V+     +    II      GD   L+   N+ +G
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   K LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKT----IESHNIIS----AGDALRLIYEQNVIHG 131
             L  + S+W     + V+     +    II      GD   L+   N+ +G
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYG 116

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P+T+   + LLP+ + PMI Y L+ L  AG+ ++ +          
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 90  DYL--ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
             L  + S+W     + V+            A  +I E+ + H D  L+ GD +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPD----GTAQAF-IIGEEFIGHDDCALVLGDNI 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	616
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-15
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-13
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	7e-11
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	1e-11
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	5e-11
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	3e-10
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	5e-09
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	1e-09
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	5e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	2e-09
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	2e-09
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-09
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	1e-04
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-04
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-09
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	6e-05
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	2e-04
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	5e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	9e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-06
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-06
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-05
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	1e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-04
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	5e-04
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	6e-08
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	3e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	5e-07
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	7e-07
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	8e-07
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-06
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	2e-04
3r3r_A	187	Ferripyochelin binding protein; structural genomic	2e-06
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	4e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	5e-06
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	9e-06
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	1e-05
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-05
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	1e-05
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	2e-05
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	2e-05
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	3e-05
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	3e-04
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	7e-04
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	7e-04
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	8e-04
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	8e-04

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH 396
              +    +I  G  IG N  I  +  I  GC I  NV I +GS+I    I+ +     +
Sbjct: 2   PNNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFY 61

Query: 397 ---VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
              +     +I+   A+++   V+    +IG+ F       +
Sbjct: 62  NDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTI 103

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGS-------------YIWD 384
              +   T+IG   + G    I ++  IG    IG+   I+               ++ +
Sbjct: 82  ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGE 141

Query: 385 NVIIEDGC-----------------ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427
             II+D                   EL  V +    ++ A +V+ PG+ ++   ++G   
Sbjct: 142 KSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGA 201

Query: 428 VV----PAHSKVS 436
           VV    P  + V 
Sbjct: 202 VVTKDVPKETVVV 214

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIV 399
            +     I YG  I  N       I +G  IG+  ++ E    + N  I    +   +I+
Sbjct: 22  TIEDNVYIDYGCIIRDN-----VHIKKGSFIGARSILGEYLVDFYNDRIN---KKHPLII 73

Query: 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
            +  +++   V+    ++      G +  +  ++K+
Sbjct: 74  GENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKI 109

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 22  DDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFC 81
             +    ++AI+LA    T+ RP+T   PK L+ +   P+I Y + +L+  G+ ++ +  
Sbjct: 19  SHMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDI-III 77

Query: 82  CAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTV 141
             + K+  DYL+         + V+ + +       +   L   +  +   +V+ + + +
Sbjct: 78  VGYLKEQFDYLKE-------KYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDADNYL 130

Query: 142 SNMLLTQALQEH 153
              +    L   
Sbjct: 131 FKNMFRNDLTRS 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 4e-12
 Identities = 58/388 (14%), Positives = 110/388 (28%), Gaps = 112/388 (28%)

Query: 16  RVSEDPDDLARQPLQAILLADSFTTKFRPITLER--PKVLLPLVNVPMINYTLAWLEAAG 73
           ++  +    +       L   S   + R +   +     LL L+NV            A 
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------Q--NAK 257

Query: 74  VAEVFVFCC-----AHSKQVIDYLENSEWF------SQPNFTVKTIESHNI------ISA 116
               F   C        KQV D+L  +              T    E  ++         
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRP 315

Query: 117 GDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERK---KKDNNAVMTMIIKKS- 172
            D L     + V+  +   +S       ++ +++++        K  N   +T II+ S 
Sbjct: 316 QD-LP---RE-VLTTNPRRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 173 -KPSPITHQSRLGTDELFM-----AIDPNTKQLLYYEDKADHSKGTI--CLDKMLLAENP 224
               P  ++     D L +      I      L++++         +       L+ + P
Sbjct: 364 NVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 225 ---SISLH-----------NDKQ------DCYIDI---CSPEVLSLFTDNFDYQHLRRHF 261
              +IS+            N+        D Y       S +++  + D + Y H+  H 
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 262 VKG-----------LLLD-DIMGYKIFTHEIHSSYA-----------ARIDNYRSYDIVS 298
                         + LD   +  KI     H S A            ++  Y+ Y   +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 299 KDIIQRWTYPYVPDV-KFCGNRATKLER 325
               +R     V  +  F       L  
Sbjct: 538 DPKYER----LVNAILDFLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 96/619 (15%), Positives = 171/619 (27%), Gaps = 224/619 (36%)

Query: 64  YTLAW-LEAAGVAEVFVFCCAHSKQVIDYLE-NSEWFSQPNFTVKTIESHNIISAGDALR 121
             L W L +     V  F       V + L  N ++   P      I++     +     
Sbjct: 65  LRLFWTLLSKQEEMVQKF-------VEEVLRINYKFLMSP------IKTEQRQPSMMTRM 111

Query: 122 LIYEQNVIHGD-----------------------------FVLI-----SGDTVSNMLLT 147
            I +++ ++ D                              VLI     SG T    +  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VAL 168

Query: 148 QALQEHKERKKKDNNAV-MTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKA 206
                +K + K D     + +    S  + +    +     L   IDPN      +  ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPN------WTSRS 217

Query: 207 DHSKGTICLDKMLLAENPSISLHNDKQDCYI---DICSPEVLSLF--------------- 248
           DHS         + AE   +      ++C +   ++ + +  + F               
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 249 TDNFD---YQHLR-RHFVKGL-------LLDDIMGYKIFT--HEIHS------------- 282
           TD        H+   H    L       LL   +  +      E+ +             
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 283 -SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQ 341
               A  DN++  +      I          ++   N     E R M+  L +       
Sbjct: 338 RDGLATWDNWKHVNCDKLTTI----------IESSLNVLEPAEYRKMFDRLSV------- 380

Query: 342 VGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD 401
              F           ++ I   ++              S IW +VI  D   +   +V  
Sbjct: 381 ---FP---------PSAHIPTILL--------------SLIWFDVIKSD-VMV---VVNK 410

Query: 402 GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS-----KVSLLQQPTVHDSDEELEYADNS 456
             + K   V K            +   +   S     KV L  +  +H S          
Sbjct: 411 --LHKYSLVEKQ----------PKESTISIPSIYLELKVKLENEYALHRS---------- 448

Query: 457 SGTVEFSCTADQSNGEMTSESSEAHKPKLGTGGVGYI-WSICEGGQEEEWRHSVAPIPED 515
                     D  N   T +S +   P L      Y    I  G       H       +
Sbjct: 449 --------IVDHYNIPKTFDSDDLIPPYLD----QYFYSHI--G------HHLKNIEHPE 488

Query: 516 KLTELSEAMDDD---QELVTQDRTALSTSGELISDSNASEGDDNEDSK-------DDSVY 565
           ++T       D    ++ +  D TA + SG ++        +  +  K       D+   
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL--------NTLQQLKFYKPYICDNDPK 540

Query: 566 FEKEVEA--TFLRAVEENV 582
           +E+ V A   FL  +EEN+
Sbjct: 541 YERLVNAILDFLPKIEENL 559

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 28/158 (17%), Positives = 64/158 (40%), Gaps = 14/158 (8%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
            A+++A    T+   +     K L+ L    +I+Y ++ L  + V  +F+    ++ +  
Sbjct: 2   DALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLT 147
           +Y+ ++    +    +  I++       D   L          F+++S D   + + ++ 
Sbjct: 58  EYINSA---YKDYKNIVVIDTSGKGYIED---LNECIGYFSEPFLVVSSDLINLKSKIIN 111

Query: 148 QALQEHKERKKK--DNNAVMTMIIKKSKPSPITHQSRL 183
             +      K K  D  A+  MI K+  P+P    + L
Sbjct: 112 SIVDYFYCIKAKTPDVEALAVMIPKEKYPNPSIDFNGL 149

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 61.1 bits (148), Expect = 5e-11
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 30/118 (25%)

Query: 342 VGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC------- 392
           +  +  I  G +IG    +  +  +G    IG+ V I+    ++DNV +ED         
Sbjct: 24  IWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMV 83

Query: 393 ---------------ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
                          E R  IV  G  + A   +  G        IG    V A + V
Sbjct: 84  FTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCG------ATIGRYAFVGAGAVV 135

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIED 390
            +E++    +  + VI    KI     + + SVI   C IG    +  G+    NV I  
Sbjct: 89  IVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGK 148

Query: 391 GCE-------LRHVIVCDGVIMKAGA-VLKPGVVLSFKVVIGERFVVPA 431
            C        L ++ + D  I+  GA ++K        V +G    VPA
Sbjct: 149 NCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVG----VPA 191

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC 392
           I  S   +  +  +I     I + +K     I +G  + ++ +IE    I +   +  G 
Sbjct: 84  ISPSAIVEENAGILIMPYVVINAKAK-----IEKGVILNTSSVIEHECVIGEFSHVSVGA 138

Query: 393 EL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
           +   +V +     +   + + P       + + +  ++   + +
Sbjct: 139 KCAGNVKIGKNCFLGINSCVLPN------LSLADDSILGGGATL 176

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 19/108 (17%)

Query: 305 WTYP-YVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDS 363
           WTY    P  KF  +     +RRG         S         V+     I S + ++ S
Sbjct: 300 WTYAEITPPAKFVHDDE---DRRGS-----AVSS---------VVSGDCII-SGAALNRS 341

Query: 364 VIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411
           ++  G    S   +E + +  +V I    +L +V++  GV++  G ++
Sbjct: 342 LLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV 389

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 355 GSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG 414
                   SV+   C I S   +  S ++  V       L + +V   V +   A L   
Sbjct: 317 DRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS-- 373

Query: 415 VVLSFKVVIGERFVVPAHSKV 435
                 VVI    V+P    V
Sbjct: 374 -----NVVIDHGVVIPEGLIV 389

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394
             SA V     +G G  + +   I +DS IG+   I +  +++    +     +     L
Sbjct: 103 HPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASAL 162

Query: 395 R-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
              V V +   +  GA + PG      V IG   +V A   V
Sbjct: 163 AGGVSVGERAFLGVGARVIPG------VTIGADTIVGAGGVV 198

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL-- 394
            A +     IG    I  N+ I   +VIGEG  I  N ++   + +  N  +  G  L  
Sbjct: 97  GAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAG 156

Query: 395 -------RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKV 435
                  + VIV D V++ A  V+  GV +    V+    V    VP ++ V
Sbjct: 157 VIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVV 208

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 29/141 (20%)

Query: 296 IVSKDIIQRWTYPY--VPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTK 353
           +++      +      V +        + L  R    A  I  +  A V +   +     
Sbjct: 82  LLTAADADGFAGTALVVANPYLAYASLSHLFDRKPKAAAGIHPT--AIVAADAEVDPSAS 139

Query: 354 IGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412
           +G+ +     VI  G  IG+ V I     I    +I +G                   L 
Sbjct: 140 VGAYA-----VIESGARIGAGVSIGAHCVIGARSVIGEGG-----------------WLA 177

Query: 413 PGVVLSFKVVIGERFVVPAHS 433
           P V L   V IG R  +   S
Sbjct: 178 PRVTLYHDVTIGARVSI--QS 196

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 23/76 (30%)

Query: 340 AQVGSFTVIGYGTKIGSNSKI-------SDSVIGEGCTIGSNVLIEGS----YIWD---- 384
             +G+  VIG  + IG    +        D  IG   +I S  +I G     +  +    
Sbjct: 156 VSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI-GGEGFGFANEKGVW 214

Query: 385 -------NVIIEDGCE 393
                   V I D  E
Sbjct: 215 QKIAQIGGVTIGDDVE 230

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 346 TVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR-HVIVCDG 402
           T+IG G K+ +   I+ +V IG+   + + V I GS  I  + ++  G  L  H+ +CD 
Sbjct: 245 TLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDN 304

Query: 403 VIMKAGA-----VLKPGVVLS 418
           V +         + +PG   S
Sbjct: 305 VFVTGMTMVTRSITEPGSYSS 325

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 36/161 (22%)

Query: 276 FTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPY--VPDVKFCGNRATKLERRGMYRALE 333
           +   +    A+ +       ++++D +         V +      R  ++       A  
Sbjct: 47  YREHLGLCQASAV-------VMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQN 99

Query: 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC 392
           I  S  A + +   +G    IG+N+     VI  G  +G NV+I  G ++  N  I  G 
Sbjct: 100 IAPS--AVIDATAKLGNNVSIGANA-----VIESGVELGDNVIIGAGCFVGKNSKIGAGS 152

Query: 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433
                             L   V +  ++ IG+  ++   S
Sbjct: 153 -----------------RLWANVTIYHEIQIGQNCLI--QS 174

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 23/76 (30%)

Query: 340 AQVGSFTVIGYGTKIGSNSKI-------SDSVIGEGCTIGSNVLIEGS----YIWD---- 384
             +G+   +G  +KIG+ S++        +  IG+ C I S  ++ G+    Y  D    
Sbjct: 134 VIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV-GADGFGYANDRGNW 192

Query: 385 -------NVIIEDGCE 393
                   VII D  E
Sbjct: 193 VKIPQIGRVIIGDRVE 208

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 346 TVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR-HVIVCDG 402
           T+IG G  I +  +I+ +V IG+   +   V++ GS  I    +I     +  H+ +CD 
Sbjct: 223 TIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDK 282

Query: 403 VIMKAGA-----VLKPGVVLS 418
           V +         + +PGV  S
Sbjct: 283 VTVTGMGMVMRPITEPGVYSS 303

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           ++A +LA     +  PIT  RPK  +P+++ P+I Y + +L   G+ ++ V   + +K+ 
Sbjct: 1   MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60

Query: 89  I-DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNML 145
               L+     +Q +    T         G A+         + + ++I GD    +   
Sbjct: 61  FEKKLKEISIVTQKDDIKGT---------GAAIL----SAKFNDEALIIYGDLFFSNEKE 107

Query: 146 LTQALQEHKE 155
           +   +   + 
Sbjct: 108 ICNIITLKEN 117

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 346 TVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDGV 403
            +I    +I S + I   V IG+G  IG N  +   + + +   I    E++  ++ +G 
Sbjct: 245 VIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGS 304

Query: 404 IMKAG 408
             K  
Sbjct: 305 --KIP 307

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI 404
             IG G++IG NS +   +++ E   IG++V ++ S I +   I     +   ++ + V 
Sbjct: 263 VYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVN 322

Query: 405 MKAGAV 410
             AG +
Sbjct: 323 FGAGTL 328

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 340 AQVGSF-----TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI--------EGSYIWDNV 386
            ++G+      +VI  G+KI   S + DSVI E    G+  LI        E        
Sbjct: 287 NKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGK 346

Query: 387 IIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG 424
            I  G       +   V       + PGV +     I 
Sbjct: 347 RISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIY 384

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 18/82 (21%)

Query: 348 IGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406
                 +  N KI    +I E   I S   IEG      V I  G E+            
Sbjct: 229 SQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGP-----VYIGKGSEI-----------G 272

Query: 407 AGAVLKPGVVLSFKVVIGERFV 428
             + L+P  +L  K  IG   V
Sbjct: 273 PNSYLRPYTILVEKNKIGA-SV 293

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 354 IGSNSKISDSV-IGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411
           I   + I  +  I +   I    ++       +  +   C +    ++     +   + +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVC-----QHAHVGSACHIGSGSVIGAYSTVGEHSYI 181

Query: 412 KPGVVLSFKVVIGERFVVPAHS 433
            P VV+  +V IG+R ++    
Sbjct: 182 HPRVVIRERVSIGKRVII--QP 201

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 24/77 (31%)

Query: 340 AQVGSFTVIGYGTKIGSNSKI-------SDSVIGEGCTIGSNVLIEGS----YIWD---- 384
             +GS +VIG  + +G +S I           IG+   I    +I GS    Y+      
Sbjct: 161 CHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI-GSCGFGYVTSAFGQ 219

Query: 385 --------NVIIEDGCE 393
                    VIIED  E
Sbjct: 220 HKHLKHLGKVIIEDDVE 236

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 18/87 (20%)

Query: 346 TVIGYGTK------IGSNSKISDSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR-HV 397
           +V+  G+K      I    ++     G+   I +   I GS  I ++VII     +  H+
Sbjct: 251 SVVREGSKIDNLVQIAHQVEV-----GQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHI 305

Query: 398 IVCDGVIMKAGA-----VLKPGVVLSF 419
            + D VIM A       +  PG+    
Sbjct: 306 CIADHVIMMAQTGVTKSITSPGIYGGA 332

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           +A++LA    T+   +    PK L+ +    +I  T+  L +  V+E F+   +     I
Sbjct: 20  KAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLL-SPHVSE-FIIVASRYADDI 73

Query: 90  -DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
             +L++  +    N+ +           G +L +   +N +   F+L  GD V +    +
Sbjct: 74  DAFLKDKGF----NYKI-VRHDRPEKGNGYSLLVA--KNHVEDRFILTMGDHVYSQQFIE 126

Query: 149 ALQEHK 154
                +
Sbjct: 127 KAVRGE 132

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 28/99 (28%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
             +G   KIG+   + + VIG    I    ++E S + +   I                 
Sbjct: 284 VKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAI----------------- 326

Query: 406 KAG--AVLKPGVVLSFKVVIGERFV------VPAHSKVS 436
             G  + L+PG  L+ +  +G  FV      V   SKV+
Sbjct: 327 --GPFSRLRPGAELAAETHVGN-FVEIKKSTVGKGSKVN 362

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 28/99 (28%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
            ++G   +IG+   + + VIG+   I    ++E + +  N  +                 
Sbjct: 287 VILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTV----------------- 329

Query: 406 KAG--AVLKPGVVLSFKVVIGERFV------VPAHSKVS 436
             G  A L+PG  L+    +G  FV      +   SK  
Sbjct: 330 --GPFARLRPGAELAEGAHVGN-FVEIKKARLGKGSKAG 365

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 553 GDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLR 595
           G  +    DD   F+ EV  T  R  EEN+  D+++LE+NSL+
Sbjct: 1   GHHHHHHMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLK 43

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 545 ISDSNASEGDDNEDSKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLR 595
           +S ++     +  DS+ +   FEKE  AT  RA+E N  +D  +LE+N+LR
Sbjct: 1   MSVNSIYTDREEIDSEFEDEDFEKEGIATVERAMENNHDLDTALLELNTLR 51

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 25/111 (22%)

Query: 342 VGSFTVIGYGTKIGSNSKISDSV----------IGEGCTIGSNVLIE-GSYIWDNV---- 386
           +  F ++     IGS S I+             + +   I S  ++      +       
Sbjct: 61  IDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMG 120

Query: 387 ----IIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433
                     +   VI+   VI+ A +++ P       VVIGE   V A S
Sbjct: 121 PTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN------VVIGEGVAVGAMS 165

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 345 FTVIGYGTKIGSNSKISDS---VIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR----H 396
           F  +G    I   + I +     IG    I    ++ G   I     I     L      
Sbjct: 32  FLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVG 91

Query: 397 VIVCDGVIMKAGAVLKPGV 415
           + + D   + +  ++   +
Sbjct: 92  IEMYDFANISSRTIVYAAI 110

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401
            S    G    IG +  +   V+  GCTIG+ VL+  GS + D  IIED           
Sbjct: 75  SSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDV--------- 125

Query: 402 GVIMKAGAVLKPGVVL 417
             ++ AG+++     L
Sbjct: 126 --MIGAGSLVPQHKRL 139

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401
             +   GY   IG +  I    +  GCTIG+ VLI   S I D  I+ED           
Sbjct: 79  SDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEV--------- 129

Query: 402 GVIMKAGAVLKPGVVL-SFKVVIGERFVVPA 431
             I+ AGA + PG VL S  V +G     PA
Sbjct: 130 --IVAAGATVSPGKVLESGFVYMG----TPA 154

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 337 SRSAQVGSF-----TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391
             +  V          +G G+    N  I +S +   C       I  +++ D +     
Sbjct: 295 GENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFN 354

Query: 392 CELRHVIVC-----DGVIMKAGAVL 411
             L+          DG ++    ++
Sbjct: 355 SFLQGSESSPLKIGDGCVVMPHTII 379

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 33/122 (27%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN-------------------V 386
           +VIG G  I  N KI  SV+G    I    +IE S +                      +
Sbjct: 331 SVIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPI 389

Query: 387 IIEDGCELRHVIVCDGVIMKAGAVLKPG-------------VVLSFKVVIGERFVVPAHS 433
            I   C ++  I+     +     +                 + S  V + +  ++P+  
Sbjct: 390 GIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGI 449

Query: 434 KV 435
            +
Sbjct: 450 II 451

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 29/99 (29%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           T IG    +G ++ ++D  +G+G ++        S I D   +                 
Sbjct: 302 TQIGGRCVVGPDTTLTDVAVGDGASV-VRTHGSSSSIGDGAAV----------------- 343

Query: 406 KAG--AVLKPGVVLSFKVVIGERFV------VPAHSKVS 436
             G    L+PG  L     +G  FV      +   +KV 
Sbjct: 344 --GPFTYLRPGTALGADGKLG-AFVEVKNSTIGTGTKVP 379

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 29/99 (29%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405
           T IG  T + + + + DS IG G  I +++ IE S + D V +                 
Sbjct: 293 TKIGAETVLTNGTYVVDSTIGAGAVITNSM-IEESSVADGVTV----------------- 334

Query: 406 KAG--AVLKPGVVLSFKVVIGERFV------VPAHSKVS 436
             G  A ++P   L  +V IG  FV      +  ++K  
Sbjct: 335 --GPYAHIRPNSSLGAQVHIG-NFVEVKGSSIGENTKAG 370

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 17/85 (20%)

Query: 349 GYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKA 407
              T IG    I  S I   CT+G+N  +  GS + D  ++E+G            ++ A
Sbjct: 93  HGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGS-----------MLAA 141

Query: 408 GAVLKPGVVL-SFKVVIGERFVVPA 431
           G++L  G ++ S ++  G     PA
Sbjct: 142 GSLLTRGKIVKSGELWAG----RPA 162

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 17/85 (20%)

Query: 349 GYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKA 407
           GY T+IG    I  + +  G  +G+ V+I   S I D   I D             I+ A
Sbjct: 69  GYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHV-----------IIGA 117

Query: 408 GAVLKPGVVL-SFKVVIGERFVVPA 431
           GAV+ P   +  + +V+G    VP 
Sbjct: 118 GAVVPPNKEIPDYSLVLG----VPG 138

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 17/85 (20%)

Query: 349 GYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKA 407
            Y   +  +  +   VI   C I  + LI  GS I D   I +G             + A
Sbjct: 71  QYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGA-----------FIGA 119

Query: 408 GAVLKPGVVL-SFKVVIGERFVVPA 431
           G+++  G  +    +  G     PA
Sbjct: 120 GSLVSQGKKIPPNTLAFG----RPA 140

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 40  TKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQ----VIDYLENS 95
           ++F      +PK +L      +  +++    A   +  F+F   +       V +     
Sbjct: 11  SRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQL 70

Query: 96  EWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLI 136
                    + T       +    L  + +Q V +   + +
Sbjct: 71  GIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITV 111

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 23/122 (18%)

Query: 29  LQAILLA---DSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS 85
             AI+LA   +++  +F        K L+P    PM+ + L  L AAG++ V+V      
Sbjct: 3   PSAIVLAGGKEAWAERFG----VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGL 58

Query: 86  KQVIDY-LENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN 143
                  L +     +              +   AL  +  + ++  GD   ++ + V  
Sbjct: 59  VPAPALTLPDRGGLLE--------------NLEQALEHVEGRVLVATGDIPHLTEEAVRF 104

Query: 144 ML 145
           +L
Sbjct: 105 VL 106

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 49  RPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS--EWFSQPNFTVK 106
            PK LLPL +  ++  TLA        ++ V     + +V++ +E    +     +  + 
Sbjct: 21  TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLG 80

Query: 107 TIESHNIISAG-DALRLIYEQNVIH-GDFVLISGDTVSNML 145
              S   + +    +    E  V+  GD   I+   V++++
Sbjct: 81  CSSS---LKSALTWVDPTAEGIVLMLGDQPGITASAVASLI 118

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391
            IG G  IG  S + ++ +G GC +  +VLI+   I     +  G
Sbjct: 131 YIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPGKYVPSG 175

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 49  RPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLE--NSEWFSQPNFTVK 106
            PK LLP  +  ++  TL     AG  ++ +     +  V   +    ++     +    
Sbjct: 21  TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALDGTDVVVVEDVERG 80

Query: 107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNML 145
              + ++  A   +       V+  GD   ++  T+  ++
Sbjct: 81  C--AASLRVALARVHPRATGIVLMLGDQPQVAPATLRRII 118

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-------EGSYIWDNVIIEDGC 392
           A +     I +G  +         VIGE   IG    I          +  +  +I+ G 
Sbjct: 170 ASIKGHFFIDHGVGV---------VIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGT 220

Query: 393 ELRHVIVCDGVIMKAGA-VLKPGVVLSFKVVIGERFV----VPAHSKVSLLQQP 441
           + RH  V D V +  GA VL   +++   V IG        V ++  V + + P
Sbjct: 221 K-RHPTVGDYVTIGTGAKVLGN-IIVGSHVRIGANCWIDRDVDSNQTVYISEHP 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	616
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.96
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.95
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.94
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.94
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.93
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.93
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.92
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.92
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.92
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.91
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.89
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.89
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.86
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.85
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.85
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.84
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.78
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.78
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.74
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.73
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.71
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.71
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.69
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.69
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.69
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.68
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.67
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.66
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.66
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.66
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.65
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.65
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.64
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.64
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.6
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.6
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.56
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.56
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.55
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.55
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.54
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.53
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.53
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.53
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.53
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.52
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.52
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.52
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.52
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.51
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.51
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.5
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.5
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.49
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.49
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.48
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.48
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.47
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.47
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.47
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.46
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.46
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.46
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.46
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.45
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.45
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.45
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.45
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.45
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.45
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.45
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.45
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.45
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.44
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.44
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.44
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.43
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.43
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.42
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.42
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.41
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.41
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.41
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.41
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.41
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.4
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.38
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.38
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.38
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.37
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.37
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.37
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.37
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.36
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.36
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.35
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.35
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.34
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.33
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.31
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.3
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.3
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.25
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.25
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.22
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.22
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.2
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.2
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.19
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.19
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.18
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.18
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.17
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.17
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.17
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.15
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	99.15
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.14
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.14
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.14
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.14
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.13
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.13
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.12
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.11
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.1
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.1
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.09
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.09
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.08
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.05
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.05
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.04
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.04
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.03
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.01
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.01
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.01
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.01
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.0
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	98.99
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	98.98
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.96
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.95
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	98.94
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	98.92
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.92
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	98.92
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	98.91
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	98.91
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.87
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.81
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.79
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.74
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.65
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.65
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.49
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.47
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	97.63
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	96.66
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	95.96
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	95.26

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=1e-44  Score=397.30  Aligned_cols=381  Identities=18%  Similarity=0.242  Sum_probs=270.8

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-----C
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ-----P  101 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~-----~  101 (616)
                      .|+|||||+|+|+||+|||..+||+|+||+|+ |||+|+|+.|..+|+++|+|+++++.+++.+|+.+ .|...     .
T Consensus        20 ~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~~   98 (451)
T 1yp2_A           20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSR-AYASNMGGYKN   98 (451)
T ss_dssp             HEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHH-HCC--------
T ss_pred             ceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhh-hhhcccccccc
Confidence            58999999999999999999999999999998 99999999999999999999999988899999875 23100     0


Q ss_pred             CcEEEEEe--CC-----CccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143          102 NFTVKTIE--SH-----NIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK  170 (616)
Q Consensus       102 ~~~i~~i~--~~-----~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~  170 (616)
                      .-.+.++.  +.     ...|++++++...  ..+.    ++||+++||++++.+|.++++.|+++     ++.+|+++.
T Consensus        99 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~--~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~-----~~~~tl~~~  171 (451)
T 1yp2_A           99 EGFVEVLAAQQSPENPDWFQGTADAVRQYL--WLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRET-----DADITVAAL  171 (451)
T ss_dssp             CCEEEEEESCSSTTSCCCCCSHHHHHHHTH--HHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHT-----TCSEEEEEE
T ss_pred             cCcEEEecccccccccccccCcHHHHHHHH--HHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHc-----CCcEEEEEE
Confidence            01133332  11     1479999998643  3333    44999999999999999999999875     467888877


Q ss_pred             cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehHhhhcCCceEE-EeccccceeEeeCHhHH-hh
Q 007143          171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENPSISL-HNDKQDCYIDICSPEVL-SL  247 (616)
Q Consensus       171 ~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~-~~~~~l~~~l~~~~~~~~i-r~dl~d~gIyIcsp~vl-~l  247 (616)
                      +....   ...+++    ++.+|. +++|+.|.|||... ...+.++..+|..++.... .+++.++|||+|++++| .+
T Consensus       172 ~~~~~---~~~~~g----~v~~d~-~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~  243 (451)
T 1yp2_A          172 PMDEK---RATAFG----LMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL  243 (451)
T ss_dssp             EECHH---HHTTSE----EEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHH
T ss_pred             EcChh---hcccCC----EEEECC-CCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHH
Confidence            65311   234666    778874 78999999998521 1224455666654332111 24688999999999998 46


Q ss_pred             hhcCCCh-hhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeec
Q 007143          248 FTDNFDY-QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERR  326 (616)
Q Consensus       248 f~dnfd~-q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~  326 (616)
                      +.+.+.. .....++++.++.   .|.+++++.++ +||.+++++++|..++++++.++.    |...+....  .....
T Consensus       244 l~~~~~~~~~~~~~~l~~~i~---~g~~v~~~~~~-~~w~digt~~~l~~a~~~l~~~~~----~~~~~~~~~--~~i~~  313 (451)
T 1yp2_A          244 LRDKFPGANDFGSEVIPGATS---LGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPV----PDFSFYDRS--APIYT  313 (451)
T ss_dssp             HHTTCTTCCCTTTTHHHHHHH---TTCCEEEEECC-SCCEECSSHHHHHHHHHGGGCSSS----CSSCSCCSS--SCCCC
T ss_pred             HHhhcccccchHhhHHHHHHh---cCCceEEEEeC-CEEEECCCHHHHHHHHHHHhcccc----cchhccCCC--Ceecc
Confidence            6654321 1112244443332   35799999986 899999999999999999998873    111111110  01112


Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCC-------------------CE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN-------------------VI  387 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~-------------------v~  387 (616)
                      .+.+++++.| .++.| .++.||++|.|+. +.|.+++||++|.||++|+|.++++..+                   +.
T Consensus       314 ~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  390 (451)
T 1yp2_A          314 QPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIG  390 (451)
T ss_dssp             CCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSE
T ss_pred             CCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEE
Confidence            3345555555 45667 5688999999986 8888999999999999999999888888                   99


Q ss_pred             ECCCcEEeceEECCCcEECCCCEECCCC------EECCCcEECCCC-EECCCCEEcc
Q 007143          388 IEDGCELRHVIVCDGVIMKAGAVLKPGV------VLSFKVVIGERF-VVPAHSKVSL  437 (616)
Q Consensus       388 Ig~~~~I~~siIg~~v~Ig~~~~I~~g~------vIg~~v~Ig~~~-~v~~~~~v~~  437 (616)
                      ||++|.|.+++||++|+||++++|..++      +||++|.||+++ +|+++++|+.
T Consensus       391 Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~a  447 (451)
T 1yp2_A          391 IGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPS  447 (451)
T ss_dssp             ECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECT
T ss_pred             ECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECC
Confidence            9999999999999999999999999753      456666665554 3555555554

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=8.1e-41  Score=360.67  Aligned_cols=350  Identities=17%  Similarity=0.247  Sum_probs=267.5

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |+|||||+|.|+||+|+|...||+|+|++|+|||+|+|+.|..+|+++|+|++++.   +++|+.+...      .+.++
T Consensus         1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~------~i~~~   71 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK------EISIV   71 (401)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT------TCEEE
T ss_pred             CeEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC------cEEEE
Confidence            68999999999999999999999999999999999999999999999999999876   7777765321      24556


Q ss_pred             eCCC-ccCHHHHHHHHHhcccccCCEEEEeCceecc--hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          109 ESHN-IISAGDALRLIYEQNVIHGDFVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       109 ~~~~-~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~--~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      .++. ..|++.+++.+  ..  .++||++.||+++.  .+|+.+++    +      +.+|+++.+..     +..+++ 
T Consensus        72 ~~~~~~~g~~~~l~~~--~~--~~~~lv~~~D~~~~~~~~~~~l~~----~------~~~~i~~~~~~-----~~~~~~-  131 (401)
T 2ggo_A           72 TQKDDIKGTGAAILSA--KF--NDEALIIYGDLFFSNEKEICNIIT----L------KENAIIGVKVS-----NPKDYG-  131 (401)
T ss_dssp             ECCTTCCBSTTTGGGC--CC--SSEEEEEETTEEESCSHHHHHHTT----C------SSEEEEEEECS-----CCSSSC-
T ss_pred             eCCCCCCChHHHHHHh--cc--CCCEEEEeCccccccHHHHHHHHH----h------cCCEEEEEEcC-----CCccee-
Confidence            5655 67888888743  22  45599999999766  67887775    1      34566666543     233455 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC-----ChhhHHHH
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF-----DYQHLRRH  260 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf-----d~q~lr~d  260 (616)
                         ++.++. +++++.+.++|..+                   ++++.++|||+++|++++.+....     ++ .+ .+
T Consensus       132 ---~v~~~~-~g~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~-~~-~~  186 (401)
T 2ggo_A          132 ---VLVLDN-QNNLSKIIEKPEIP-------------------PSNLINAGIYKLNSDIFTYLDKISISERGEL-EL-TD  186 (401)
T ss_dssp             ---EEEECT-TSSEEEEECSCSSC-------------------SCSEEEEEEEEEETHHHHHHHHSCCCSSSCB-CH-HH
T ss_pred             ---EEEECC-CCeEEEEEECCCCC-------------------CCcEEEEEEEEEcHHHHHHhhhcCcCCCCce-EH-HH
Confidence               666664 68999999887421                   246788999999999998875421     11 11 24


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCC
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSA  340 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~  340 (616)
                      +++.+ .   .+.+++++..+ ++|.+|+++++|..+++.++.+|.+|..+ ....   +.....+++++++++.|++++
T Consensus       187 ~~~~~-~---~g~~v~~~~~~-~~~~dI~t~edl~~a~~~l~~~~~~~~~~-~~i~---~~~~i~~~~~ig~~~~I~~~~  257 (401)
T 2ggo_A          187 AINLM-A---KDHRVKVIEYE-GYWMDIGKPWNIIDVNKWALDNLVFSQNL-GNVE---DNVKIKGKVIIEEDAEIKSGT  257 (401)
T ss_dssp             HHHHH-H---HHSCEEEEECC-SCEEECCSHHHHHHHHHHHHHHTCCCEEC-SEEC---SSCEEESCEEECTTCEECTTC
T ss_pred             HHHHH-H---CCCcEEEEEec-ceEEcCCCHHHHHHHHHHHHHhccccccc-ceeC---CCCEEcCCeEEcCCCEECCCC
Confidence            44433 2   35678888886 69999999999999999999998766321 1111   223455678888888888888


Q ss_pred             EECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC-------
Q 007143          341 QVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK-------  412 (616)
Q Consensus       341 ~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~-------  412 (616)
                      .|.+++.||++|.|+++++|+ +++||++|.||++|.|.+++|++++.|+.++.|.+++||++|+||++++|.       
T Consensus       258 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~  337 (401)
T 2ggo_A          258 YIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEK  337 (401)
T ss_dssp             EEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCS
T ss_pred             EEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCC
Confidence            888888999999999999886 788999999999999988999999999888888888888888888888886       


Q ss_pred             -----------------CCCEECCCcEECCCCEECCCCEEccccCC
Q 007143          413 -----------------PGVVLSFKVVIGERFVVPAHSKVSLLQQP  441 (616)
Q Consensus       413 -----------------~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~  441 (616)
                                       .+++||++|.||++++|.+|++|+....+
T Consensus       338 ~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi  383 (401)
T 2ggo_A          338 EVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARI  383 (401)
T ss_dssp             CCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEE
Confidence                             36777777777777777777776654433

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.1e-40  Score=362.13  Aligned_cols=348  Identities=16%  Similarity=0.173  Sum_probs=228.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC---CCc
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PNF  103 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~---~~~  103 (616)
                      .|+|||||+|.|+||+|||...||+|+|++|+ |||+|+|+.|..+|+++|+|+++++.+++++|+.+. |...   ...
T Consensus        12 ~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~~~~~   90 (420)
T 3brk_X           12 DAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRG-WDFFRPERNE   90 (420)
T ss_dssp             GEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH-SCCCCGGGTC
T ss_pred             ceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhh-hccccccccC
Confidence            48999999999999999999999999999999 999999999999999999999998889999999763 4211   011


Q ss_pred             EEEEEeCC----Cc---cCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143          104 TVKTIESH----NI---ISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS  172 (616)
Q Consensus       104 ~i~~i~~~----~~---~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~  172 (616)
                      .+.++...    ..   .|++++++..  ...+.    ++||+++||++++.+|.++++.|+++     ++.+|+++.+.
T Consensus        91 ~v~i~~~~~~~~~~~~~~Gt~~al~~a--~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~-----~~~~tl~~~~~  163 (420)
T 3brk_X           91 SFDILPASQRVSETQWYEGTADAVYQN--IDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDS-----GADVTIGCLEV  163 (420)
T ss_dssp             EEEEECCC-------CCCCHHHHHHTT--HHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHT-----TCSEEEEEEEE
T ss_pred             CEEEeCccccccCCccccCCHHHHHHH--HHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHc-----CCeEEEEEeec
Confidence            24444321    12   7999999853  23333    45999999999999999999999875     36778887765


Q ss_pred             CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC
Q 007143          173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN  251 (616)
Q Consensus       173 ~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn  251 (616)
                      ...   +..+++    ++.+|. +++|+.|.+||.......       . .+    .+.+.++|||+|++++| .++...
T Consensus       164 ~~~---~~~~~g----~v~~d~-~g~v~~~~ekp~~~~~~~-------~-~~----~~~~~~~Giy~~~~~~l~~~l~~~  223 (420)
T 3brk_X          164 PRM---EATGFG----VMHVNE-KDEIIDFIEKPADPPGIP-------G-NE----GFALASMGIYVFHTKFLMEAVRRD  223 (420)
T ss_dssp             ETT---GGGGSE----EEEECT-TSBEEEEEESCSSCCCBT-------T-BT----TEEEEEEEEEEEEHHHHHHHHTSS
T ss_pred             Ccc---ccCccc----EEEECC-CCcEEEeEeCCCcccccc-------c-cc----cceEEeeeeEEEeHHHHHHHHHHh
Confidence            322   345676    777774 689999999885322110       0 01    24678899999999987 466542


Q ss_pred             CChhhHHHHhhhhhhhccccCceEEEEEcc----------ccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcc
Q 007143          252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIH----------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRAT  321 (616)
Q Consensus       252 fd~q~lr~dfv~~~l~~~i~g~~I~~~~~~----------~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~  321 (616)
                      +.......+|..++++..+...+++++.++          ++||.+|+++++|..++++++.+|.+...     ....  
T Consensus       224 ~~~~~~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~-----~~~~--  296 (420)
T 3brk_X          224 AADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDI-----YDKS--  296 (420)
T ss_dssp             CCC----------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCT-----TCCS--
T ss_pred             cccCCccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhc-----CCCC--
Confidence            221110123333444333322389999992          47999999999999999999998753211     1110  


Q ss_pred             eeeecceEEcCCcEECC-----CCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec
Q 007143          322 KLERRGMYRALEIEQSR-----SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~-----~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~  396 (616)
                      .......++++.+.+++     ++.+ .++.||++|.| +++.|.+|+||++|.||++|.|.+|+||+++.||.+|.|.+
T Consensus       297 ~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~  374 (420)
T 3brk_X          297 WPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN  374 (420)
T ss_dssp             SCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEE
T ss_pred             CceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEec
Confidence            00111222333333333     3444 45555666666 55555556666666666666666666666666666666655


Q ss_pred             eEECCCcEECCCCEEC
Q 007143          397 VIVCDGVIMKAGAVLK  412 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~  412 (616)
                      ++||++|.||++++|.
T Consensus       375 ~~ig~~~~i~~~~~i~  390 (420)
T 3brk_X          375 VVIDHGVVIPEGLIVG  390 (420)
T ss_dssp             EEECTTCEECTTCEES
T ss_pred             eEECCCCEECCCCEEe
Confidence            5555555555555554

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=2.3e-39  Score=359.63  Aligned_cols=373  Identities=14%  Similarity=0.136  Sum_probs=259.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc--CCCCCCCcE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS--EWFSQPNFT  104 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~--~~~~~~~~~  104 (616)
                      ..+.+||||||+||||+|+|   ||+|+||+|+|||+|+|+.|.++|+++|+|+++++.++|++|+.+.  .|    +.+
T Consensus        11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~----~~~   83 (501)
T 3st8_A           11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTL----GRT   83 (501)
T ss_dssp             -CEEEEEEECSCCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHH----TSC
T ss_pred             CCceEEEECCcCcccCCCCC---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhc----CCc
Confidence            34789999999999999976   9999999999999999999999999999999999999999999752  23    467


Q ss_pred             EEEEeCCCccCHHHHHHHHHhcccccC----CEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCC
Q 007143          105 VKTIESHNIISAGDALRLIYEQNVIHG----DFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT  178 (616)
Q Consensus       105 i~~i~~~~~~~~gdalr~~~~~~~i~~----dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~  178 (616)
                      +.++.+++.+|||+|++.  ++..+.+    ++|+++||.  +....+..++++|+..     ++.+|+++.+..     
T Consensus        84 i~~~~q~~~lGTa~Av~~--a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~-----~~~~ti~~~~~~-----  151 (501)
T 3st8_A           84 IDVALQDRPLGTGHAVLC--GLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAV-----SAAVTVLTTTLD-----  151 (501)
T ss_dssp             CEEEECSSCCCHHHHHHH--HHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHT-----TCSEEEEEEECS-----
T ss_pred             EEEEEcCCCCCcHHHHHH--HHHHhccccccceeeecCcceeecHHHHHHHHHHHhhc-----cccceEeeeccC-----
Confidence            889999999999999996  4455643    489999997  4456899999999986     478888888765     


Q ss_pred             cccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH-
Q 007143          179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL-  257 (616)
Q Consensus       179 ~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l-  257 (616)
                      .+.+||    .+..| +.+++..+.|+|+.+.       +-.        ..+++++|+|++.+++|..+.+....... 
T Consensus       152 dp~~yG----~i~~~-~~g~v~~ivEk~~~~~-------~~~--------~i~~in~Giy~f~~~~l~~~l~~l~~~n~~  211 (501)
T 3st8_A          152 DPFGYG----RILRT-QDHEVMAIVEQTDATP-------SQR--------EIREVNAGVYAFDIAALRSALSRLSSNNAQ  211 (501)
T ss_dssp             CCTTSC----EEEEC-TTCCEEEEECGGGCCH-------HHH--------HCCEEEEEEEEEEHHHHHHHHTTCCCCSTT
T ss_pred             Cchhcc----ccccc-cceeEEeeccccCCCh-------hhc--------cceeeeceeeeecchhHHHhhhhhcccccc
Confidence            456888    77777 4889999999986331       111        24678899999999998755332111000 


Q ss_pred             HHHhhhhhhhcc-ccCceEEEEEccccchhh--ccChhhHHHHhhhh----hccc----cccccCCC-------cccCC-
Q 007143          258 RRHFVKGLLLDD-IMGYKIFTHEIHSSYAAR--IDNYRSYDIVSKDI----IQRW----TYPYVPDV-------KFCGN-  318 (616)
Q Consensus       258 r~dfv~~~l~~~-i~g~~I~~~~~~~~y~~~--V~s~~sY~~a~~di----l~r~----~~p~~p~~-------~~~~~-  318 (616)
                      ...++..++... ..+..+..+... .+|..  +++...+..+....    ...|    ..-..|..       .+..+ 
T Consensus       212 ~e~yltd~i~~~~~~g~~v~~~~~~-~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv  290 (501)
T 3st8_A          212 QELYLTDVIAILRSDGQTVHASHVD-DSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDT  290 (501)
T ss_dssp             CSCCTTHHHHHHHHTTCCEEEEECS-SGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTC
T ss_pred             cccchhhHHHHHHhcCceEEEEecc-chhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcc
Confidence            112233332221 256677777765 33333  33333332221111    1111    11011111       00000 


Q ss_pred             --Ccceeee---------------------------------cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEece
Q 007143          319 --RATKLER---------------------------------RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDS  363 (616)
Q Consensus       319 --~~~~~~~---------------------------------~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s  363 (616)
                        .......                                 ....++.++.+++.++|.+++.|++++.||.++.|.++
T Consensus       291 ~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s  370 (501)
T 3st8_A          291 VIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNS  370 (501)
T ss_dssp             EECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESC
T ss_pred             eecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccc
Confidence              0000000                                 12234556666777777778888888888888888899


Q ss_pred             EECCCCEECCCCEEeceEECCCCEECCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCE----ECC
Q 007143          364 VIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPA  431 (616)
Q Consensus       364 ~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~  431 (616)
                      +||++|.|++.+.|.+++|+.+|.||.+|.+-+        ++||++|+||.++.|.+++.||++|+||+|++    ||+
T Consensus       371 ~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~  450 (501)
T 3st8_A          371 TIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPP  450 (501)
T ss_dssp             EECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCT
T ss_pred             eecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCC
Confidence            999999999999999999999999999998843        78888888888888888888888888888877    456


Q ss_pred             CCE-Ecccc
Q 007143          432 HSK-VSLLQ  439 (616)
Q Consensus       432 ~~~-v~~~~  439 (616)
                      ++. |++.+
T Consensus       451 ~~l~~~~~~  459 (501)
T 3st8_A          451 GALAVSAGP  459 (501)
T ss_dssp             TCEECCCCC
T ss_pred             CCeEEeccC
Confidence            653 44444

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=100.00  E-value=4.2e-38  Score=345.12  Aligned_cols=322  Identities=15%  Similarity=0.186  Sum_probs=216.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ++|.|||||+|.|+||+|   .+||+|+|++|+|||+|+|+.|..+|+++|+|++++..+++++++.+        ..+.
T Consensus         7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~--------~~~~   75 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD--------PSLN   75 (459)
T ss_dssp             CCEEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------C
T ss_pred             CcceEEEECCCCCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc--------CCcE
Confidence            569999999999999997   78999999999999999999999999999999999888899988865        2355


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      ++.++...|++++++..  ...+.  +.||++.||+  +...+|..+++.|++       ..++++..+..     +..+
T Consensus        76 ~v~~~~~~g~~~~i~~~--~~~~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~-------~~~~~~~~~~~-----~~~~  141 (459)
T 4fce_A           76 WVLQAEQLGTGHAMQQA--APHFADDEDILMLYGDVPLISVDTLQRLLAAKPE-------GGIGLLTVKLD-----NPSG  141 (459)
T ss_dssp             EEECSSCCCHHHHHHHH--GGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCT-------TSEEEEEEECS-----CCTT
T ss_pred             EEeCCCCCCcHHHHHHH--HHhcCCCCcEEEEeCCcccCCHHHHHHHHHHHhh-------CCEEEEEEecC-----CCCc
Confidence            66667778999998864  34454  3499999999  778899999998764       22334444332     3446


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCChhhHHHHh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRRHF  261 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~q~lr~df  261 (616)
                      ++    ++..|  ++++..+.++|......               -...+.++|+|+++++++. ++..-.....-...+
T Consensus       142 ~g----~v~~~--~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  200 (459)
T 4fce_A          142 YG----RIVRE--NGDVVGIVEHKDASDAQ---------------REINEINTGILVANGRDLKRWLSLLDNNNAQGEFY  200 (459)
T ss_dssp             SC----EEEEE--TTEEEEEECGGGCCTTG---------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCC
T ss_pred             cc----EEEeC--CCcEEEEEECCCCChHH---------------hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEE
Confidence            66    66666  68999999886522110               0135778999999999774 433211000001112


Q ss_pred             hhhhhhcc-ccCceEEEEEccccch--hhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECC
Q 007143          262 VKGLLLDD-IMGYKIFTHEIHSSYA--ARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR  338 (616)
Q Consensus       262 v~~~l~~~-i~g~~I~~~~~~~~y~--~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~  338 (616)
                      +.+++... ..|.+++++..+ +||  .+|+++++|..+...+..++...+.............+..+++.+++++.|++
T Consensus       201 ~~d~~~~~~~~g~~v~~~~~~-~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~  279 (459)
T 4fce_A          201 ITDIIALAHADGKKIATVHPT-RLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDT  279 (459)
T ss_dssp             TTHHHHHHHHTTCCEEEECCS-SGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECT
T ss_pred             HHHHHHHHHHCCCeEEEEEcC-CHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECC
Confidence            33333332 246789999886 555  56999999999876555443221111110011112334455666777777777


Q ss_pred             CCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       339 ~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      +|.|++++.||++|.|+++++|.+++||++|.|+++|.|.+++|++++.||++|+|.
T Consensus       280 ~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~  336 (459)
T 4fce_A          280 NVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLR  336 (459)
T ss_dssp             TEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEEC
T ss_pred             CeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEEC
Confidence            777777777777777777777777777777777777776666666666666555553

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=7.7e-38  Score=344.11  Aligned_cols=318  Identities=16%  Similarity=0.202  Sum_probs=201.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .-+|||||+|.|+||++   .+||+|+|++|+|||+|+|+.|..+|+++|+|++++..+++++++.+         .+.+
T Consensus        11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~---------~i~~   78 (468)
T 1hm9_A           11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG---------QTEF   78 (468)
T ss_dssp             CEEEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS---------SSEE
T ss_pred             CCcEEEEcCCCCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC---------CcEE
Confidence            35899999999999986   78999999999999999999999999999999999888888877643         1345


Q ss_pred             EeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          108 IESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      +.++...|++++++...  ..+.   +.||+++||+  +...+|+.+++.|++.     ++.+|+++.+..     ...+
T Consensus        79 v~~~~~~G~~~sl~~a~--~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~-----~~~~~i~~~~~~-----~~~~  146 (468)
T 1hm9_A           79 VTQSEQLGTGHAVMMTE--PILEGLSGHTLVIAGDTPLITGESLKNLIDFHINH-----KNVATILTAETD-----NPFG  146 (468)
T ss_dssp             EECSSCCCHHHHHHTTH--HHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHT-----TCSEEEEEEECS-----CCTT
T ss_pred             EeCCccCChHHHHHHHH--HHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEeccC-----CCCc
Confidence            55666789999988543  3343   3499999999  7788999999999875     356677766654     3345


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHF  261 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~df  261 (616)
                      ++    ++.+|. ++++..|.++|.....       .        ....+.++|+|+++++.+ +++............+
T Consensus       147 ~g----~v~~d~-~g~v~~~~ek~~~~~~-------~--------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~  206 (468)
T 1hm9_A          147 YG----RIVRND-NAEVLRIVEQKDATDF-------E--------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYY  206 (468)
T ss_dssp             SC----EEEECT-TCCEEEEECTTTCCTT-------G--------GGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCC
T ss_pred             ee----EEEECC-CCCEEEEEECCCCChH-------H--------hcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEE
Confidence            66    677774 6899999998642110       0        024577899999999954 5554311100000112


Q ss_pred             hhhhhhccc-cCceEEEEEccccchhh--ccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEEC
Q 007143          262 VKGLLLDDI-MGYKIFTHEIHSSYAAR--IDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQS  337 (616)
Q Consensus       262 v~~~l~~~i-~g~~I~~~~~~~~y~~~--V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~  337 (616)
                      +.++++..+ .|.+++++.++ +||.+  ++++++|..+...+..++..+.. +...+.. ....+..+.+.+++++.|+
T Consensus       207 ~~d~~~~l~~~g~~v~~~~~~-g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~  284 (468)
T 1hm9_A          207 ITDVIGIFRETGEKVGAYTLK-DFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVN-PEATYIDIDVEIAPEVQIE  284 (468)
T ss_dssp             TTHHHHHHHHHTCCEEEEECS-SGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESC-GGGCEECTTCEECTTCEEC
T ss_pred             HHHHHHHHHHCCCEEEEEEcC-ChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEC-CCeeEECCCcEECCCCEEC
Confidence            233333222 46789999987 78987  55999999988776554422111 0000000 0111223344455555555


Q ss_pred             CCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143          338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC  392 (616)
Q Consensus       338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~  392 (616)
                      +++.|++++.||++|.|++++.|+++.||++|.|+ +|.|.+++|++++.|+.+|
T Consensus       285 ~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~  338 (468)
T 1hm9_A          285 ANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYA  338 (468)
T ss_dssp             SSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSC
T ss_pred             CCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCce
Confidence            55555555555555555555555444444444444 4444333333333333333

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=100.00  E-value=4.9e-36  Score=328.44  Aligned_cols=319  Identities=13%  Similarity=0.173  Sum_probs=221.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.+.|||||+|.|+||++   ..||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+++++++.+.        .+.
T Consensus         4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------~~~   72 (456)
T 2v0h_A            4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE--------QVN   72 (456)
T ss_dssp             CCEEEEEECCCCCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC--------CCE
T ss_pred             CcceEEEECCCCCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC--------CcE
Confidence            458999999999999986   689999999999999999999999999999999998888888888652        244


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      ++.++...|++++++..  ...+.  +.||++.||+  +...+|..+++.|++       +.++++..+..     +..+
T Consensus        73 ~v~~~~~~g~~~~~~~~--~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-------~~~~~~~~~~~-----~~~~  138 (456)
T 2v0h_A           73 WVLQTEQLGTAHAVQQA--APFFKDNENIVVLYGDAPLITKETLEKLIEAKPE-------NGIALLTVNLD-----NPTG  138 (456)
T ss_dssp             EEECSCCCCHHHHHHHH--GGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCT-------TSEEEEEEECS-----SCTT
T ss_pred             EEeCCCCCCcHHHHHHH--HHhcCCCCeEEEEcCCcceeCHHHHHHHHHHHhc-------CCEEEEEeecC-----CCCc
Confidence            56566678999998864  34453  3499999999  677899999988764       23455554433     2335


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChh----hH
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQ----HL  257 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q----~l  257 (616)
                      ++    .+..|  ++++..+.++|...       +...        ...+.++|+|+++++.+ +.+.......    .-
T Consensus       139 ~g----~v~~~--~g~v~~~~ek~~~~-------~~~~--------~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  197 (456)
T 2v0h_A          139 YG----RIIRE--NGNVVAIVEQKDAN-------AEQL--------NIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYY  197 (456)
T ss_dssp             SC----EEEEE--TTEEEEEECTTTCC-------HHHH--------TCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCC
T ss_pred             cc----eEEEc--CCcEEEEEECCCCC-------hhHh--------cCcEEEEEEEEEEHHHHHHHHHHhccccccccEE
Confidence            55    56666  68899998876411       1100        13567899999999855 4543211100    00


Q ss_pred             HHHhhhhhhhccccCceEEEEEccc-cchhhccChhhHHHHhhhhhccccccc-cCCCcccCCCcceeeecceEEcCCcE
Q 007143          258 RRHFVKGLLLDDIMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQRWTYPY-VPDVKFCGNRATKLERRGMYRALEIE  335 (616)
Q Consensus       258 r~dfv~~~l~~~i~g~~I~~~~~~~-~y~~~V~s~~sY~~a~~dil~r~~~p~-~p~~~~~~~~~~~~~~~~i~~~~~v~  335 (616)
                      ..|+++.++.   .+.+++++..++ ..|.+|+++++|..+.+.+..+....+ .+...+. ........+++.+++++.
T Consensus       198 ~~d~~~~~~~---~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ig~~~~  273 (456)
T 2v0h_A          198 LTDLIALANQ---DNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIY-DPARFDLRGTLEHGKDVE  273 (456)
T ss_dssp             GGGHHHHHHH---TTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEES-CGGGEEEEEEEEECSSCE
T ss_pred             HHHHHHHHHH---cCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE-CCCccEEcCceEECCCCE
Confidence            1233333322   467899998862 245689999999998876554322111 0111000 111334556777888888


Q ss_pred             ECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          336 QSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      |++++.|++++.||++|.|++++.|.+++||++|.|+++|.|.+++|++++.|+++|.|.
T Consensus       274 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~  333 (456)
T 2v0h_A          274 IDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLR  333 (456)
T ss_dssp             ECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEEC
T ss_pred             EcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEEC
Confidence            888888888888888888888888888888888888888887777777776666666654

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.96  E-value=1.1e-28  Score=253.30  Aligned_cols=237  Identities=16%  Similarity=0.229  Sum_probs=184.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-------
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ-------  100 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~-------  100 (616)
                      .|+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++++..++|++|+.+..+...       
T Consensus         2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~   81 (281)
T 3juk_A            2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNK   81 (281)
T ss_dssp             CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCH
T ss_pred             ceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccc
Confidence            5899999999999999999999999999999999999999999999999999999999999999976422110       


Q ss_pred             -----------CCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchh-----HHHHHHHHHHhhccCCCc
Q 007143          101 -----------PNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNML-----LTQALQEHKERKKKDNNA  163 (616)
Q Consensus       101 -----------~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~-----l~~~l~~h~~~~~~d~~a  163 (616)
                                 .+..+.++.+....|++++++..  ...+. ++|||++||++++.+     |..+++.|++..     +
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a--~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~-----~  154 (281)
T 3juk_A           82 ENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTG--EALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQ-----C  154 (281)
T ss_dssp             HHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHT--HHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHC-----S
T ss_pred             hhhhhhhhccccCccEEEEecCCCCCcHHHHHHH--HHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcC-----C
Confidence                       13577788877889999999854  44454 459999999999888     999999998753     3


Q ss_pred             eEEEEEecCCCCCCCcccccCCCceEEEEeC-CCC--eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143          164 VMTMIIKKSKPSPITHQSRLGTDELFMAIDP-NTK--QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC  240 (616)
Q Consensus       164 ~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~-~~~--rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc  240 (616)
                       .|+++......   ...+||    ++.+|. .++  +|..+.|||.....                 .+.+.++|||++
T Consensus       155 -~~v~~~~~~~~---~~~~~g----~v~~~~~~~g~~~v~~~~Ekp~~~~~-----------------~~~~~~~GiYi~  209 (281)
T 3juk_A          155 -SIVAIEEVALE---EVSKYG----VIRGEWLEEGVYEIKDMVEKPNQEDA-----------------PSNLAVIGRYIL  209 (281)
T ss_dssp             -CEEEEEECCTT---TGGGSE----EEEEEEEETTEEEEEEEEESCCTTTC-----------------SCSEEEEEEEEE
T ss_pred             -CEEEEEEechh---hcccCC----EEEeccCCCCceEEeEEEECcCCCCC-----------------CcceeEEEEEEE
Confidence             45566554332   456777    777763 135  99999999863211                 145678999999


Q ss_pred             CHhHHhhhhcCC-----ChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          241 SPEVLSLFTDNF-----DYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       241 sp~vl~lf~dnf-----d~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ++++|..+....     .|+ + .|+++.++    ...+++++.++ +||.+|+++++|..+++.++.
T Consensus       210 ~~~~l~~l~~~~~~~~~e~~-l-~d~i~~l~----~~~~v~~~~~~-g~~~dIgt~~d~~~a~~~l~~  270 (281)
T 3juk_A          210 TPDIFEILSETKPGKNNEIQ-I-TDALRTQA----KRKRIIAYQFK-GKRYDCGSVEGYIEASNAYYK  270 (281)
T ss_dssp             CTTHHHHHHTCCCCGGGSCC-H-HHHHHHHH----HHSCCEEEECC-SEEEETTSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCCcee-H-HHHHHHHH----hcCCEEEEEeC-CeEEcCCCHHHHHHHHHHHHh
Confidence            999999887531     111 1 34444443    33489999997 899999999999999998875

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.95  E-value=1.4e-26  Score=236.16  Aligned_cols=235  Identities=15%  Similarity=0.207  Sum_probs=180.3

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhc-CCCCCCCc
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENS-EWFSQPNF  103 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~-~~~~~~~~  103 (616)
                      ++.|+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++++. .+.+.+++... .|    ++
T Consensus        22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~~~----~~   97 (269)
T 4ecm_A           22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEF----GV   97 (269)
T ss_dssp             --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG----TC
T ss_pred             ccCcEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhcccc----Cc
Confidence            45689999999999999999999999999999999999999999999999999999864 57888888753 23    46


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      ++.++.+....|++++++..  ...+. ++||+++||++++.+|.++++.|+++     ++.+|+++.+..     +..+
T Consensus        98 ~i~~~~~~~~~G~~~al~~a--~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~-----~~~~  165 (269)
T 4ecm_A           98 SFTYRVQDKAGGIAQALGLC--EDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQ-----KEGAKVLLQSVD-----DPER  165 (269)
T ss_dssp             EEEEEECSSCCCHHHHHHTT--HHHHTTSEEEEEETTEEESSCSHHHHHHHHTS-----SSSEEEEEEECS-----CGGG
T ss_pred             eEEEeeCCccCcHHHHHHHH--HHhcCCCcEEEEeCCccCccCHHHHHHHHHhc-----CCCeEEEEEECC-----CCCC
Confidence            78777777788999999854  33444 45999999999899999999999864     356777777654     3456


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV  262 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv  262 (616)
                      ++    ++.+|  .++|+.+.++|..+                   .+.++++|||+++++++..+........ ..-.+
T Consensus       166 ~g----~v~~d--~g~v~~~~ekp~~~-------------------~~~~~~~Giy~~~~~~l~~l~~~~~~~~-ge~~l  219 (269)
T 4ecm_A          166 FG----VANIQ--NRKIIEIEEKPKEP-------------------KSSYAVTGIYLYDSKVFSYIKELKPSAR-GELEI  219 (269)
T ss_dssp             SE----EEEEE--TTEEEEEEESCSSC-------------------SCSEEEEEEEEECTTHHHHHTSCCBCTT-SCBCH
T ss_pred             ce----EEEEc--CCEEEEEEECCCCC-------------------CCcEEEEEEEEECHHHHHhhhhcCCCCC-CeeeH
Confidence            66    77777  48999999987422                   1356789999999999987764211000 00112


Q ss_pred             hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       263 ~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ..+++..+...+++++..+ ++|.+|+++++|..+++.+.+
T Consensus       220 ~d~l~~l~~~g~v~~~~~~-~~~~dIgt~~dl~~a~~~l~~  259 (269)
T 4ecm_A          220 TDINNWYLKRGVLTYNEMS-GWWTDAGTHVSLQRANALARD  259 (269)
T ss_dssp             HHHHHHHHHTTCEEEEECC-SCEEECSSHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCEEEEEeC-CEEEeCCCHHHHHHHHHHHHh
Confidence            3333333333478888876 799999999999999988764

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.94  E-value=4.3e-26  Score=230.67  Aligned_cols=228  Identities=15%  Similarity=0.262  Sum_probs=167.7

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-----CCCC---
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-----EWFS---   99 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-----~~~~---   99 (616)
                      .|+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|.++|+++|+|++++..+++++|+.+.     .+..   
T Consensus         2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~   81 (259)
T 1tzf_A            2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA   81 (259)
T ss_dssp             CCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGG
T ss_pred             CcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccccc
Confidence            48999999999999999999999999999999999999999999999999999998889999998753     1110   


Q ss_pred             ----------CCCcEEEEEeCCCccCHHHHHHHHHhcccc--cCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEE
Q 007143          100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVI--HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTM  167 (616)
Q Consensus       100 ----------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i--~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~  167 (616)
                                ..+..+.+..+....|++++++.  ++..+  .++|++++||++++.++.++++.|++.     ++.+|+
T Consensus        82 ~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~--a~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~t~  154 (259)
T 1tzf_A           82 ENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKR--VAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAH-----GKKATL  154 (259)
T ss_dssp             GTEEEETTCCCCCCEEEEEECCSSCCHHHHHHH--TGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHH-----CCSEEE
T ss_pred             ccceeeeeccccccceeeeecccccCcHHHHHH--HHHhcCCCCcEEEEECCEecccCHHHHHHHHHHh-----CCeEEE
Confidence                      00112333444557899999985  44555  345999999999999999999999865     355676


Q ss_pred             EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh
Q 007143          168 IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL  247 (616)
Q Consensus       168 v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l  247 (616)
                      ...+.       ..+++    ++.+|  +++|..|.+||...                    ..+.++|||+++++++..
T Consensus       155 ~~~~~-------~~~~g----~v~~~--~g~v~~~~ekp~~~--------------------~~~~~~Giy~~~~~~l~~  201 (259)
T 1tzf_A          155 TATFP-------PGRFG----ALDIQ--AGQVRSFQEKPKGD--------------------GAMINGGFFVLNPSVIDL  201 (259)
T ss_dssp             EEECC-------CCCSE----EEEEE--TTEEEEEEESCSCC--------------------SCCEECCCEEECGGGGGG
T ss_pred             EEecC-------CCCcc----EEEEc--CCEEEEEEecCCCC--------------------CceEEEEEEEeCHHHHHh
Confidence            54431       23565    67777  68999999987521                    357789999999999987


Q ss_pred             hhc-CCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          248 FTD-NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       248 f~d-nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      +.. ++++.   .+++..++.    ..+++++.++ ++|.+|+++++|..+++.+..
T Consensus       202 l~~~~~~~~---~~~i~~~~~----~~~v~~~~~~-~~~~dI~t~~d~~~a~~~~~~  250 (259)
T 1tzf_A          202 IDNDATTWE---QEPLMTLAQ----QGELMAFEHP-GFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CCSTTCCTT---THHHHHHHH----TTCEEEEEEC-SCEEECCSHHHHHHHHHHHHT
T ss_pred             hcccccccH---HHHHHHHHH----cCCEEEEEeC-cEEEeCCCHHHHHHHHHHHhc
Confidence            754 23332   345555432    3479999987 799999999999999988765

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.94  E-value=9.1e-26  Score=233.52  Aligned_cols=243  Identities=12%  Similarity=0.146  Sum_probs=165.1

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCC-------
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF-------   98 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~-------   98 (616)
                      ...|+|||||+|.|+||+|+|...||+|+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+... |.       
T Consensus        12 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~l~~~l~~   90 (297)
T 2ux8_A           12 KPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIA-YELEATMAA   90 (297)
T ss_dssp             CCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCC-HHHHHHHHT
T ss_pred             cCccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhh-hhhhhhhhh
Confidence            3458999999999999999999999999999999999999999999999999999998889999998642 20       


Q ss_pred             -----------CCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc---hhHHHHHHHHHHhhccCCCc
Q 007143           99 -----------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN---MLLTQALQEHKERKKKDNNA  163 (616)
Q Consensus        99 -----------~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~---~~l~~~l~~h~~~~~~d~~a  163 (616)
                                 ...++++.++.++...|++++++..  ...+. ++|+|++||++++   .+|..+++.|++..     +
T Consensus        91 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a--~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~-----~  163 (297)
T 2ux8_A           91 RGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCA--RDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVG-----G  163 (297)
T ss_dssp             TTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTT--HHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHC-----S
T ss_pred             ccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHH--HHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcC-----C
Confidence                       0013567777777788999999853  34454 4599999999877   68999999998752     3


Q ss_pred             eEEEEEecCCCCCCCcccccCCCceEEEEeC-CCC--eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143          164 VMTMIIKKSKPSPITHQSRLGTDELFMAIDP-NTK--QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC  240 (616)
Q Consensus       164 ~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~-~~~--rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc  240 (616)
                       .|+.+.+....   ...++|    ++.++. +.+  +|..|.++|.+..                 ..+.+.++|+|++
T Consensus       164 -~~i~~~~~~~~---~~~~yg----~v~~~~~~~~~~~v~~~~ekp~~~~-----------------~~~~~~~~Giyi~  218 (297)
T 2ux8_A          164 -NLICAEEVPDD---QTHRYG----IITPGTQDGVLTEVKGLVEKPAPGT-----------------APSNLSVIGRYIL  218 (297)
T ss_dssp             -EEEEEC------------------CCCCCCBCSSEEEC-------------------------------CCCEEEEEEE
T ss_pred             -CEEEEEecCcc---cCCCCC----eEEecccCCCceeEEEEEECCCCCC-----------------CCccEEEEEEEEE
Confidence             45655554221   234565    443332 234  8888988874210                 1246788999999


Q ss_pred             CHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       241 sp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      +++++..+.....-.. ..-.+..++...+...+++++.++ ++|.+|++|++|..++++++.
T Consensus       219 ~~~~l~~l~~~~~~~~-~~~~l~d~i~~l~~~~~v~~~~~~-~~w~dIgt~~dl~~a~~~~~~  279 (297)
T 2ux8_A          219 QPEVMRILENQGKGAG-GEIQLTDAMQRMIGDQPFHGVTFQ-GTRYDCGDKAGFIQANLAVAL  279 (297)
T ss_dssp             CTHHHHHHHHTC---------CCTTGGGGTTTSCEEEEECS-SEEEETTSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhCCCCC-CeeEHHHHHHHHHhcCCEEEEEec-ceEEeCCCHHHHHHHHHHHHh
Confidence            9999988764321000 011123444444444589999997 799999999999999987764

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.93  E-value=2.2e-25  Score=231.13  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=177.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC--------
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------   99 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------   99 (616)
                      .|+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|+++++.++|++|+.. .|..        
T Consensus         8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~-~~~l~~~l~~~~   86 (302)
T 2e3d_A            8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDT-SFELEAMLEKRV   86 (302)
T ss_dssp             CCEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSC-CHHHHHHHC---
T ss_pred             ccEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhc-chhhhhhhhhcc
Confidence            5899999999999999999999999999999999999999999999999999999888999999864 2200        


Q ss_pred             ------------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecch--------hHHHHHHHHHHhhc
Q 007143          100 ------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM--------LLTQALQEHKERKK  158 (616)
Q Consensus       100 ------------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~--------~l~~~l~~h~~~~~  158 (616)
                                  ..++++.++.+....|++++++..  ...+. ++|+|++||++++.        +|..+++.|++.. 
T Consensus        87 ~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a--~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~-  163 (302)
T 2e3d_A           87 KRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA--HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG-  163 (302)
T ss_dssp             -CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHT--HHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHC-
T ss_pred             chhhhhhhhhccccCcceEEeeCCccCCHHHHHHHH--HHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcC-
Confidence                        014577777777789999999864  34454 45999999998763        7999999997652 


Q ss_pred             cCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehHhhhcCCceEEEecc
Q 007143          159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK  232 (616)
Q Consensus       159 ~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl  232 (616)
                          + +|+++.+..     ...++|    ++.++.   ..+   +|..+.++|.+...                 .+.+
T Consensus       164 ----~-~~i~~~~~~-----~~~~yg----~v~~~~~~~~~g~~~~v~~~~ekp~~~~~-----------------~~~~  212 (302)
T 2e3d_A          164 ----H-SQIMVEPVA-----DVTAYG----VVDCKGVELAPGESVPMVGVVEKPKADVA-----------------PSNL  212 (302)
T ss_dssp             ----C-EEEEEEECS-----CGGGSE----EEECTTCCCCTTCEEEECEEEESCCTTTC-----------------SCSE
T ss_pred             ----C-cEEEEEEcc-----CCCCcc----EEEecccccCCCCceeEEEEEECCCCCcc-----------------ccce
Confidence                4 567666643     345666    565421   245   89999998753110                 1346


Q ss_pred             ccceeEeeCHhHHhhhhcCCC-----hhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          233 QDCYIDICSPEVLSLFTDNFD-----YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       233 ~d~gIyIcsp~vl~lf~dnfd-----~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ..+|+|+++++++..+.....     |. + .+.+..++.   .+ +++++.++ ++|.+|++|++|..++++++.
T Consensus       213 ~~~Giyi~~~~~l~~l~~~~~~~~~~~~-l-~d~i~~l~~---~~-~v~~~~~~-~~~~DIgt~~d~~~a~~~~~~  281 (302)
T 2e3d_A          213 AIVGRYVLSADIWPLLAKTPPGAGDEIQ-L-TDAIDMLIE---KE-TVEAYHMK-GKSHDCGNKLGYMQAFVEYGI  281 (302)
T ss_dssp             EEEEEEEECTTHHHHHTCCCC----CCC-H-HHHHHHHHH---HS-CEEEEECC-SCEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEEEEECHHHHHHHHhhCCCCCCcee-h-HHHHHHHHH---hC-CEEEEEeC-CeEEcCCCHHHHHHHHHHHHh
Confidence            779999999999988765221     11 1 234443332   24 89999997 799999999999999976653

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.93  E-value=5.9e-25  Score=230.25  Aligned_cols=240  Identities=15%  Similarity=0.172  Sum_probs=178.1

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCC-----
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFS-----   99 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~-----   99 (616)
                      ++.|+|||||+|.|+||+|+|...||+|+||+|+|||+|+|+.|..+|+++|+|++++..+++.+|+.... |..     
T Consensus        10 ~~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~   89 (323)
T 2pa4_A           10 NAVKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER   89 (323)
T ss_dssp             --CCEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred             hcceEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence            34589999999999999999999999999999999999999999999999999999988889998875421 100     


Q ss_pred             ------------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CC--EEEEeCceecc--hhHHHHHHHHHHhhccCCC
Q 007143          100 ------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GD--FVLISGDTVSN--MLLTQALQEHKERKKKDNN  162 (616)
Q Consensus       100 ------------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~d--fLlv~gD~i~~--~~l~~~l~~h~~~~~~d~~  162 (616)
                                  ..++++.++.++...|++++++.  +...+. ++  |||++||++++  .+|..+++.|++.     +
T Consensus        90 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~--a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~-----~  162 (323)
T 2pa4_A           90 GKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGL--AESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEF-----G  162 (323)
T ss_dssp             TCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHT--TGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTT-----C
T ss_pred             chhhhhhhhhccccCcceEEEeCCccCCcHHHHHH--HHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhc-----C
Confidence                        01356777777777899999985  344453 45  99999999777  6899999999764     2


Q ss_pred             ceEEEEEecCCCCCCCcccccCCCceEEEEeC---CC--CeEEEeeecCCCCCcceEeehHhhhcCCceEEEecccccee
Q 007143          163 AVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NT--KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYI  237 (616)
Q Consensus       163 a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~--~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gI  237 (616)
                      + .|+++.+..+.   ...+||    ++.++.   ..  ++|..|.++|.+...                 .+.+..+|+
T Consensus       163 ~-~~i~~~~~~~~---~~~~yg----~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-----------------~~~~~~~Gi  217 (323)
T 2pa4_A          163 G-SVLCAVEVSEA---DVSKYG----IFEIEADTKDSDVKKVKGMVEKPAIEDA-----------------PSRLAATGR  217 (323)
T ss_dssp             S-EEEEEEECCGG---GGGGSE----EEEEEECCSSTTEEEEEEEEESCCTTTC-----------------SCSEEEEEE
T ss_pred             C-cEEEEEEeccc---ccCCcc----EEEeCCcccCCCceeEEEEEECCCCccc-----------------cccEEEEEE
Confidence            3 46666554322   344666    666661   23  499999998852110                 134677999


Q ss_pred             EeeCHhHHhhhhcCCC-----hhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          238 DICSPEVLSLFTDNFD-----YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       238 yIcsp~vl~lf~dnfd-----~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      |+++++++..+.....     |+ + .+.+..++.   .|.+++++.++ ++|.+|+++++|..++++++.
T Consensus       218 Y~~~~~~~~~l~~~~~~~~ge~~-l-~d~i~~l~~---~g~~v~~~~~~-g~w~DIgt~~dl~~a~~~~~~  282 (323)
T 2pa4_A          218 YLLDRKIFDALRRITPGAGGELQ-L-TDAIDLLID---EGHPVHIVIHQ-GKRHDLGNPGGYIPACVDFGL  282 (323)
T ss_dssp             EEEETHHHHHHHHCCCCGGGCCC-H-HHHHHHHHH---TTCCEEEEECC-SEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHhhCCCCCCeEe-H-HHHHHHHHH---cCCCEEEEEeC-CeEEeCCCHHHHHHHHHHHhh
Confidence            9999999988764221     11 1 244444332   35789999997 799999999999999987664

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.92  E-value=4.4e-24  Score=221.62  Aligned_cols=256  Identities=12%  Similarity=0.087  Sum_probs=180.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCccccee--CCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhc-CCCCCCC
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPL--VNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENS-EWFSQPN  102 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi--~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~-~~~~~~~  102 (616)
                      +.++|||||+|.|+||+|     ||+|+||  +|+|||+|+|+.+..+|+++|+|++++. .+++++|+.+. .|    +
T Consensus         4 m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~----~   74 (303)
T 3pnn_A            4 MKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEG----R   74 (303)
T ss_dssp             CCCEEEEECTTCBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTT----T
T ss_pred             CceEEEEECCCCcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhcc----C
Confidence            358999999999999999     8999999  5999999999999999999999999988 58999999763 23    3


Q ss_pred             cEEEEEeCC---------------CccCHHHHHHHHHhcccccCCEEEEeCceecchh-HHHHHHHHHHhhccCCCceEE
Q 007143          103 FTVKTIESH---------------NIISAGDALRLIYEQNVIHGDFVLISGDTVSNML-LTQALQEHKERKKKDNNAVMT  166 (616)
Q Consensus       103 ~~i~~i~~~---------------~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~-l~~~l~~h~~~~~~d~~a~mT  166 (616)
                      .++.++.++               ..+|+|+|++.  ++..+.++|||++||++++.+ |+.++++|++..  .+++.+|
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~--a~~~i~~~~lV~~gD~l~~~~~~~~l~~~~~~~~--~~~~~~~  150 (303)
T 3pnn_A           75 IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLM--GRDAIREPFAVINADDFYGRNGFEVLARKLMTLE--GKQGEYC  150 (303)
T ss_dssp             SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHT--TTTTCCSCEEEEESSCBCCHHHHHHHHHHHHTTT--TCSSEEE
T ss_pred             CcEEEEecccccccccccccccccccCCcHHHHHH--HHHhcCCCEEEEECCeecCHHHHHHHHHHHHHhc--cccCceE
Confidence            567777665               57899999994  566777779999999999886 999999998631  1346778


Q ss_pred             EEEecCCCCCCCcc-cccCCCc-eEEEEeCCCCeEEEeeecCCCCC--cceEeehHhhhcCCceE-EEeccccceeEeeC
Q 007143          167 MIIKKSKPSPITHQ-SRLGTDE-LFMAIDPNTKQLLYYEDKADHSK--GTICLDKMLLAENPSIS-LHNDKQDCYIDICS  241 (616)
Q Consensus       167 ~v~~~~~~~~~~~~-~r~~~~~-~vv~id~~~~rvl~~~e~p~~~~--~~~~l~~~l~~~~~~~~-ir~dl~d~gIyIcs  241 (616)
                      +++.+..     ++ .+++... .++.+|. +++|..+.|||....  ....+...   .-.... -.+.++.+|+|+++
T Consensus       151 v~~~~~~-----~~~~~~g~~~~G~v~~d~-~g~v~~i~Ekp~~~~~~~~~~~~~~---~g~~~~~~~~~~i~~GiY~f~  221 (303)
T 3pnn_A          151 MVGYRVG-----NTLSESGGVSRGVCQVDE-KHLLTGVVERTGIERTDGTISFRDE---TGKICTLAEDAPVSMNMWGFT  221 (303)
T ss_dssp             EEEEEGG-----GSCBTTBCEEEEEEEECT-TSBEEEEEEEEEEEEETTEEEEECT---TSCEEEECTTCEEEEEEEEEC
T ss_pred             EEEEECC-----CccCccCceeeeeEeeCC-CCcEEEEEECCCCcccccccccccc---ccccccCCCCCEEEEEEEEEC
Confidence            7776653     22 3442111 2667774 689999999985210  00000000   000000 02568899999999


Q ss_pred             HhHHhhhhcCCC-------hhhHHHHhhhhhhhccc-cCc-eEEEEEccccchhhccChhhHHHHhhhhhccc
Q 007143          242 PEVLSLFTDNFD-------YQHLRRHFVKGLLLDDI-MGY-KIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW  305 (616)
Q Consensus       242 p~vl~lf~dnfd-------~q~lr~dfv~~~l~~~i-~g~-~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~  305 (616)
                      |+++..+...|.       ...-...++.++++..+ .|. +++++..+ ++|.+|+++++|..+.+.+-..|
T Consensus       222 ~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~-g~w~dIgt~~dl~~a~~~l~~~~  293 (303)
T 3pnn_A          222 PDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTT-ARWFGVTYSDDRPGVVAKLRELT  293 (303)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECS-CCCBCCSSGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeC-CceECCCCHHHHHHHHHHHHHHH
Confidence            999998754110       00000112333443333 354 89999997 89999999999999988776655

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.92  E-value=4e-24  Score=221.00  Aligned_cols=228  Identities=17%  Similarity=0.194  Sum_probs=171.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhc-CCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~-~~~~~~~~~i  105 (616)
                      .|+|||||+|.|+||+|+|...||+|+||+|+|||+|+|+.|..+|+++|+|+++ ++.+++++++.+. .|    ++++
T Consensus         3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g~~~----g~~i   78 (295)
T 1lvw_A            3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQF----GVRF   78 (295)
T ss_dssp             SCEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG----TSEE
T ss_pred             ceEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhcccc----CceE
Confidence            3899999999999999999999999999999999999999999999999999886 6688899999763 24    4677


Q ss_pred             EEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCcee-cchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTV-SNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i-~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      .++.++...|++++++..  ...+. ++|+++.||.+ .+.+|..+++.|.++.     ..+|++..+..     ++.++
T Consensus        79 ~~~~~~~~~G~~~al~~a--~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~-----~~~~v~~~~v~-----dp~~~  146 (295)
T 1lvw_A           79 SYRVQEEPRGIADAFIVG--KDFIGDSKVALVLGDNVFYGHRFSEILRRAASLE-----DGAVIFGYYVR-----DPRPF  146 (295)
T ss_dssp             EEEECSSCCCGGGHHHHT--HHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCC-----SSEEEEEEECS-----CCTTS
T ss_pred             EEeeCCCCCChHHHHHHH--HHHhCCCcEEEEECCccccCcCHHHHHHHHHHcC-----CCcEEEEEECC-----CcccC
Confidence            777777788999998853  34454 45888889984 4679999999997642     23444444443     33466


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC-----ChhhHH
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF-----DYQHLR  258 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf-----d~q~lr  258 (616)
                      +    ++.+|. +++++.+.+||..+                   ++++..+|+|+++++++..+..-.     .+. + 
T Consensus       147 g----~v~~d~-~g~v~~~~ekp~~~-------------------~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~-~-  200 (295)
T 1lvw_A          147 G----VVEFDS-EGRVISIEEKPSRP-------------------KSNYVVPGLYFYDNQVVEIARRIEPSDRGELE-I-  200 (295)
T ss_dssp             E----EEEECT-TSBEEEEEESCSSC-------------------SCSEECCSEEEECTTHHHHHHHCCCCTTSCCC-H-
T ss_pred             C----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEeEEEcHHHHHHHHhcCCcccCcee-H-
Confidence            6    777774 78999999987522                   134677999999999988774311     110 1 


Q ss_pred             HHhhhhhhhccccCceEEEEEccccc-hhhccChhhHHHHhhhh
Q 007143          259 RHFVKGLLLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDI  301 (616)
Q Consensus       259 ~dfv~~~l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~di  301 (616)
                      .|.++.++    ...++.++.+..+| |.+|+++++|..++..+
T Consensus       201 td~~~~~l----~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~  240 (295)
T 1lvw_A          201 TSVNEEYL----RMGKLRVELMGRGMAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             HHHHHHHH----HTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHH----HcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHH
Confidence            23333332    33467777776575 99999999999987754

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.92  E-value=3.6e-24  Score=221.14  Aligned_cols=229  Identities=17%  Similarity=0.233  Sum_probs=171.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhcC-CCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENSE-WFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~~-~~~~~~~~i  105 (616)
                      .|+|||||+|.|+||+|+|...||+|+||+|+|||+|+|+.|..+|+++|+|++. ++.+++++++.+.. |    ++++
T Consensus         2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~----g~~i   77 (293)
T 1fxo_A            2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNW----GLDL   77 (293)
T ss_dssp             CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG----TCEE
T ss_pred             CceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhccccc----CceE
Confidence            4899999999999999999999999999999999999999999999999998884 56788999997632 4    4677


Q ss_pred             EEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCcee-cchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTV-SNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i-~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      .++.++...|++++++..  ...+. ++|+++.||.+ .+.+|..+++.|.++.     ..+|++..+..     ++.++
T Consensus        78 ~~~~~~~~~G~~~al~~a--~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~-----~~~~v~~~~v~-----dp~~~  145 (293)
T 1fxo_A           78 QYAVQPSPDGLAQAFLIG--ESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQ-----TGASVFAYHVL-----DPERY  145 (293)
T ss_dssp             EEEECSSCCCGGGHHHHT--HHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCC-----SSEEEEEEECS-----CGGGS
T ss_pred             EEeeCCCCCCHHHHHHHH--HHHhCCCCEEEEECChhccCccHHHHHHHHHhcC-----CCcEEEEEECC-----CcccC
Confidence            777777788999998853  34454 45999999984 4679999999997542     23444444433     34467


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC-----ChhhHH
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF-----DYQHLR  258 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf-----d~q~lr  258 (616)
                      |    ++.+|. +++++.+.++|..+                   ++.+..+|+|+++++++..+..-.     .+. + 
T Consensus       146 g----~v~~d~-~g~v~~~~ekp~~~-------------------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~-~-  199 (293)
T 1fxo_A          146 G----VVEFDQ-GGKAISLEEKPLEP-------------------KSNYAVTGLYFYDQQVVDIARDLKPSPRGELE-I-  199 (293)
T ss_dssp             E----EEEECT-TSCEEEEEESCSSC-------------------SSSEEEEEEEEECTTHHHHHHHCCCCTTSSCC-H-
T ss_pred             c----EEEECC-CCcEEEEEECCCCC-------------------CCCeEEEEEEEEcHHHHHHHHhcCcccCCcee-H-
Confidence            7    777874 78999999987422                   134677899999999998774311     111 1 


Q ss_pred             HHhhhhhhhccccCceEEEEEccccc-hhhccChhhHHHHhhhhh
Q 007143          259 RHFVKGLLLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDII  302 (616)
Q Consensus       259 ~dfv~~~l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~dil  302 (616)
                      .|.++.++    ..+++.++.+..+| |.+|+++++|..++..+-
T Consensus       200 td~~~~~l----~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~  240 (293)
T 1fxo_A          200 TDVNRAYL----ERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA  240 (293)
T ss_dssp             HHHHHHHH----HTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHH----hcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence            23333333    33467777776575 999999999999876553

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.91  E-value=2.8e-24  Score=222.21  Aligned_cols=228  Identities=17%  Similarity=0.217  Sum_probs=171.5

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhc-CCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~-~~~~~~~~~i~  106 (616)
                      |+|||||+|.|+||+|+|...||+|+||+|+|||+|+|+.|..+|+++|+|+++ ++.+++++++.+. .|    ++++.
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~----g~~i~   79 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEF----GIQLE   79 (296)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG----TCEEE
T ss_pred             cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhccccc----CceEE
Confidence            799999999999999999999999999999999999999999999999999886 6688999999763 24    46777


Q ss_pred             EEeCCCccCHHHHHHHHHhccccc-CCEEEEeCcee-cchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTV-SNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i-~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.++...|++++++..  ...+. ++|+++.||++ .+.+|..+++.|.++.     ..+|++..+..     ++.++|
T Consensus        80 ~~~~~~~~G~~~al~~a--~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~-----~~~~v~~~~v~-----dp~~yg  147 (296)
T 1mc3_A           80 YAEQPSPDGLAQAFIIG--ETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAART-----EGATVFGYQVM-----DPERFG  147 (296)
T ss_dssp             EEECSSCCCSTHHHHHT--HHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCC-----SSEEEEEEECS-----CCSSSB
T ss_pred             EeccCCCCCHHHHHHHH--HHHhCCCCEEEEECCccccccCHHHHHHHHHHcC-----CCCEEEEEECC-----CcccCC
Confidence            77777788999998853  34454 45888889984 4678999999986532     23444444433     334677


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC-----ChhhHHH
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF-----DYQHLRR  259 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf-----d~q~lr~  259 (616)
                          ++.+|. +++++.+.+||..+                   ++.+..+|+|+++++++..+..-.     .++ + .
T Consensus       148 ----~v~~d~-~g~v~~~~ekp~~~-------------------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~-~-t  201 (296)
T 1mc3_A          148 ----VVEFDD-NFRAISLEEKPKQP-------------------KSNWAVTGLYFYDSKVVEYAKQVKPSERGELE-I-T  201 (296)
T ss_dssp             ----BCEEET-TEEEEECCBSCSSC-------------------SCSEEEEEEEECCTHHHHHHHSCCCCSSSSCC-H-H
T ss_pred             ----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEEEEEcHHHHHHHHhcCccccCCcc-H-H
Confidence                677774 78999999987522                   134667999999999998774311     111 1 2


Q ss_pred             HhhhhhhhccccCceEEEEEccccc-hhhccChhhHHHHhhhhh
Q 007143          260 HFVKGLLLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDII  302 (616)
Q Consensus       260 dfv~~~l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~dil  302 (616)
                      |+++.++    ...++.++.+..+| |.+++++++|..++..+.
T Consensus       202 d~~~~~l----~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~  241 (296)
T 1mc3_A          202 SINQMYL----EAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ  241 (296)
T ss_dssp             HHHHHHH----HTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHH----hcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence            3333332    33467777776676 999999999999987653

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.89  E-value=1.2e-22  Score=211.16  Aligned_cols=239  Identities=13%  Similarity=0.187  Sum_probs=147.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCC-CCCccccee-CCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCc
Q 007143           27 QPLQAILLADSFTTKFRPITL-ERPKVLLPL-VNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~-~~PK~Llpi-~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~  103 (616)
                      +.|+|||||+|.|+||+|+|. ..||+|+|| +|+|||+|+++.|..+ +++|+|++++. .+++++++... |    ++
T Consensus         3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~-~----~~   76 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE-I----KN   76 (308)
T ss_dssp             CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-C----SS
T ss_pred             CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-h----CC
Confidence            348999999999999999996 799999999 5999999999999999 99999999876 46888888652 3    34


Q ss_pred             -EEEEEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCceec-chh-HHHHHHH---HHHhhccCCCceEEEEEecCCCC
Q 007143          104 -TVKTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDTVS-NML-LTQALQE---HKERKKKDNNAVMTMIIKKSKPS  175 (616)
Q Consensus       104 -~i~~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~i~-~~~-l~~~l~~---h~~~~~~d~~a~mT~v~~~~~~~  175 (616)
                       .+.++.++...|++.+++...  ..+. ++ ||+++||+++ +.+ |..+++.   |.+.     ++.+|+.+++..+ 
T Consensus        77 ~~~~~i~~~~~~gt~~al~~a~--~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~-  148 (308)
T 2qh5_A           77 KSVGFLLESLSKNTANAIALSA--LMSDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQK-----GFLVTFGVSIDKP-  148 (308)
T ss_dssp             CEEEEEEESSCCCHHHHHHHHH--HTSCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHT-----TCEEEEEEECSSC-
T ss_pred             CccEEEeCCCCCChHHHHHHHH--HHhCCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhc-----CCEEEEEEecCCC-
Confidence             566777777889999998643  3454 45 9999999977 676 9999988   4442     4688988877543 


Q ss_pred             CCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCC--
Q 007143          176 PITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNF--  252 (616)
Q Consensus       176 ~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnf--  252 (616)
                          ..+||    ++.+| ..++|+.|.|||.....     ...+..      .+.+.++|||+++++++ ..|....  
T Consensus       149 ----~~~~g----~i~~d-~~~~V~~~~Ekp~~~~~-----~~~~~~------g~~~~n~Giy~~~~~~ll~~l~~~~p~  208 (308)
T 2qh5_A          149 ----NTEFG----YIESP-NGLDVKRFIEKPSLDKA-----IEFQKS------GGFYFNSGMFVFQAGVFLDELKKHAPT  208 (308)
T ss_dssp             ----CTTSE----EEECS-SSSBCSEEEESCCHHHH-----HHHHHH------CCEEEEEEEEEEEHHHHHHHHHHHCHH
T ss_pred             ----CCCce----EEEEC-CCCEEEEEEECCChHHH-----HHHhhc------CCeEEEeEEEEEEHHHHHHHHHHhChH
Confidence                24566    66665 36899999998752100     001110      12467899999999875 4443110  


Q ss_pred             --------------------ChhhHHHHhhhhh----hhc-cc-cCceEEEEEccccchhhccChhhHHHHhhh
Q 007143          253 --------------------DYQHLRRHFVKGL----LLD-DI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKD  300 (616)
Q Consensus       253 --------------------d~q~lr~dfv~~~----l~~-~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d  300 (616)
                                          ++..+..+++..+    +.. .+ .+.+++++.++ ++|.+|++|++|..++..
T Consensus       209 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~-~~w~digt~~~l~~~~~~  281 (308)
T 2qh5_A          209 ILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELN-AKWSDLGNFNALFEEAAN  281 (308)
T ss_dssp             HHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECC-SCCBC-------------
T ss_pred             HHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECC-CceeCCCCHHHHHHHhhc
Confidence                                0000011222211    111 12 45789999987 899999999999987654

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.89  E-value=2.9e-23  Score=210.08  Aligned_cols=222  Identities=9%  Similarity=0.084  Sum_probs=155.1

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHH-CCCcEEEEEcCCcHHHHHHHHHhc--CCCCCCCcEEEE
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENS--EWFSQPNFTVKT  107 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~-~Gv~eI~vv~~~~~~~i~~~l~~~--~~~~~~~~~i~~  107 (616)
                      +||||||.||||+|+|..+||+|+||+|+|||+|+|+.|.. +|+++|+|++++..+ +++++.+.  .|.. +.. ..+
T Consensus         2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~-~~~-~~~   78 (255)
T 4evw_A            2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGI-KQF-YIA   78 (255)
T ss_dssp             EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTC-SSE-EEE
T ss_pred             EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCC-CCc-eEE
Confidence            79999999999999999999999999999999999999999 799999999997654 44444331  1210 112 234


Q ss_pred             EeCCCccCHHHHHHHHHhcccc-------cCCEEEEeCceec-chhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007143          108 IESHNIISAGDALRLIYEQNVI-------HGDFVLISGDTVS-NMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH  179 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i-------~~dfLlv~gD~i~-~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~  179 (616)
                      +.++..+|+++|++...  ..+       .++|||++||+++ +.++..+     ..     .+..|+++.+..     +
T Consensus        79 ~~~~~~~Gt~~av~~a~--~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~-----~~~~~i~~~~~~-----~  141 (255)
T 4evw_A           79 ELHTETRGQAETVTLGL--EELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQ-----HSDGYLEVFQGG-----G  141 (255)
T ss_dssp             EESSCCSSHHHHHHHHH--HHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GG-----SSSEEEEEEECC-----S
T ss_pred             EeCCCCCCHHHHHHHHH--HHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hh-----cCCcEEEEEecC-----C
Confidence            55677899999999653  344       3459999999987 5566543     11     244577776653     3


Q ss_pred             ccccCCCceEEEEeCCCC--eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhH-H-----hhhhcC
Q 007143          180 QSRLGTDELFMAIDPNTK--QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV-L-----SLFTDN  251 (616)
Q Consensus       180 ~~r~~~~~~vv~id~~~~--rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~v-l-----~lf~dn  251 (616)
                      + +||    ++.+|. .+  +|..+.||+..                     ++++.+|+|++++.. +     +++..+
T Consensus       142 p-~yG----~v~~d~-~g~~~V~~i~EK~~~---------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~  194 (255)
T 4evw_A          142 D-NWS----FAKPEH-AGSTKVIQTAEKNPI---------------------SDLCSTGLYHFNRKEDYLEAYREYVARP  194 (255)
T ss_dssp             S-CSC----EEEESS-TTCCBEEEEESSSCS---------------------SSEEEEEEEEESCHHHHHHHHHHHHTSC
T ss_pred             C-cee----EEEECC-CCCeEEEEEEeccCc---------------------cCcEEEeEEEECcHHHHHHHHHHHHhcc
Confidence            3 788    788875 46  99999998431                     367889999999862 2     222221


Q ss_pred             CChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhh
Q 007143          252 FDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       252 fd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      -....-...++.++++..+ .|.+++++.++.++|.+++++++|..+.+
T Consensus       195 ~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~  243 (255)
T 4evw_A          195 SQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR  243 (255)
T ss_dssp             GGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred             cccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence            1000001123444444433 56789999986589999999999998743

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.86  E-value=2.7e-20  Score=187.97  Aligned_cols=243  Identities=14%  Similarity=0.147  Sum_probs=166.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      ++.|||||+|.|+|| |     ||+|+||+|+|||+|+++.+..+|+++|+|+++  .++|++++..  |    ++++.+
T Consensus         2 ~~~aiIlA~G~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~--~----g~~v~~   67 (252)
T 3oam_A            2 SFTVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA--F----GGVVCM   67 (252)
T ss_dssp             CEEEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--T----TCEEEE
T ss_pred             ceEEEEecCcCCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH--c----CCEEEE
Confidence            578999999999999 5     899999999999999999999999999999885  4788888875  2    456655


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ..++...|++.+...+........+ ||++.||+  +...+|..+++.|++.     ++.+|+++.+..     ++.++.
T Consensus        68 ~~~~~~~Gt~~~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-----~~~~~~~~~~v~-----~~~~~~  137 (252)
T 3oam_A           68 TSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-----SAPMATLAVEIE-----DEAEVF  137 (252)
T ss_dssp             CCTTCCSHHHHHHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-----SCSEEEEEEEEC-----CHHHHT
T ss_pred             cCCCCCCcHHHHHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-----CCCEEEEeeecC-----CHHHhh
Confidence            5556677888865543322111334 99999998  6678999999999864     356777766654     223331


Q ss_pred             C-CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhc-CCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhh
Q 007143          185 T-DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAE-NPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV  262 (616)
Q Consensus       185 ~-~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~-~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv  262 (616)
                      + +...+.+| .+++++.|.++|-+...      .-+.. .... -...+++.|||++++++|..|........-+.+.+
T Consensus       138 ~p~~g~vv~d-~~g~v~~fsr~~i~~~~------~~~~~~~~~~-~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~l  209 (252)
T 3oam_A          138 NPNAVKVITD-KSGYALYFSRATIPWDR------DNFAKADKAI-VQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECL  209 (252)
T ss_dssp             CTTSCEEEEC-TTSBEEEEESSCSSCCH------HHHHSSSCCC-CSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTC
T ss_pred             CCCceEEEEC-CCCeEEEEeCCCCCCCC------Cccccccccc-cccceEEEEEEEcCHHHHHHHHcCCCCcccccchh
Confidence            1 11256676 47899999998743211      10000 0000 01357789999999999998865321110011222


Q ss_pred             hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       263 ~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ..+ .....|.+|+++..++.+|.+|+++++|..+.+.+-+
T Consensus       210 e~l-r~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~  249 (252)
T 3oam_A          210 EQL-RVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAE  249 (252)
T ss_dssp             TTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             HHH-HHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHh
Confidence            111 1112588999987765789999999999998776543

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.85  E-value=1.7e-21  Score=196.97  Aligned_cols=221  Identities=14%  Similarity=0.220  Sum_probs=153.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.|.|||||+|.|+||+|+|...||+|+|++|+|||+|+|+.|..+|+++|+|++++..++++++...  |    +  +.
T Consensus        24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~--~----~--~~   95 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK--Y----G--VR   95 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH--H----C--CE
T ss_pred             cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh--C----C--cE
Confidence            35899999999999999999999999999999999999999999999999999999877777655432  3    2  34


Q ss_pred             EEeCCC--ccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHN--IISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~--~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++..+.  ..|++++++.  +...+. ++++++||+++..++   ++.+.+     +++.+|+....  +.     .+++
T Consensus        96 iv~~~~~~~~g~~~al~~--a~~~~~-~~lv~~~D~~~~~~~---~~~~~~-----~~~~~t~~~~~--~~-----~~~~  157 (254)
T 1jyk_A           96 LVFNDKYADYNNFYSLYL--VKEELA-NSYVIDADNYLFKNM---FRNDLT-----RSTYFSVYRED--CT-----NEWF  157 (254)
T ss_dssp             EEECTTTTTSCTHHHHHT--TGGGCT-TEEEEETTEEESSCC---CCSCCC-----SEEEEECEESS--CS-----SCCE
T ss_pred             EEECCCccCCCcHHHHHH--HHHHCC-CEEEEeCCcccCHHH---HHHHHh-----CCceEEEEccc--CC-----CCeE
Confidence            454433  4678888774  344453 699999999765443   222221     23556654322  11     1333


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh--h--hHHHH
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY--Q--HLRRH  260 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~--q--~lr~d  260 (616)
                           +.+|. +++|+.+.++|.                      ..+..+|||+++++.+..|.+-...  .  .....
T Consensus       158 -----v~~d~-~g~v~~~~e~~~----------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~  209 (254)
T 1jyk_A          158 -----LVYGD-DYKVQDIIVDSK----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDL  209 (254)
T ss_dssp             -----EEECT-TCBEEEEECCCS----------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTC
T ss_pred             -----EEECC-CCeEEEEEECCC----------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCcccc
Confidence                 34664 689999988642                      2367889999999866544321100  0  00112


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      ++..++...+.+.+++++.+++++|.+|+++++|..+.+.+
T Consensus       210 ~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l  250 (254)
T 1jyk_A          210 YWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL  250 (254)
T ss_dssp             CTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHh
Confidence            33444444456788999988768999999999999987654

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.85  E-value=5.5e-21  Score=200.96  Aligned_cols=236  Identities=13%  Similarity=0.168  Sum_probs=163.5

Q ss_pred             eEEEEEeCCCCCCCCCCC-CCCCcccceeCC-eehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcE
Q 007143           29 LQAILLADSFTTKFRPIT-LERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT  104 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT-~~~PK~Llpi~g-~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~  104 (616)
                      |++||||+|.|+||+||| ...||+|+|++| +|||+|+++.|..+ |+++|+|++++. .+.+++++....     ...
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~-----~~~   76 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELP-----DEN   76 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSC-----GGG
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccc-----cce
Confidence            799999999999999999 779999999999 99999999999997 899999999875 677888886531     112


Q ss_pred             EEEEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCceecch--hHHHHHH----HHHHhhccCCCceEEEEEecCCCCC
Q 007143          105 VKTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDTVSNM--LLTQALQ----EHKERKKKDNNAVMTMIIKKSKPSP  176 (616)
Q Consensus       105 i~~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~i~~~--~l~~~l~----~h~~~~~~d~~a~mT~v~~~~~~~~  176 (616)
                        ++.++..+|++.++.....  .+. ++ ||+++||++...  +|..+++    .|++.     ++.+|+.+++..|  
T Consensus        77 --ii~e~~~~gta~ai~~a~~--~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~-----~~~vt~~i~p~~~--  145 (336)
T 2x65_A           77 --IIAEPMKKNTAPACFIGTK--LADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKY-----DGLFTFGIVPTRP--  145 (336)
T ss_dssp             --EEEESSCCCHHHHHHHHHT--TSCTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHH-----CSEEEEEECCCSC--
T ss_pred             --EEeCCCCCCcHHHHHHHHH--hhCCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhc-----CCeEEEEeecccC--
Confidence              3555677899999986543  343 34 899999996532  5554444    45542     3688988877654  


Q ss_pred             CCcccccCCCceEEEEeCC----CCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC
Q 007143          177 ITHQSRLGTDELFMAIDPN----TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN  251 (616)
Q Consensus       177 ~~~~~r~~~~~~vv~id~~----~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn  251 (616)
                         .++||    ++..+..    .++|..|.|||.....     ...+..      ...+.++|||+++++++ ..|...
T Consensus       146 ---~~~yG----~I~~~~~~~~~~~~V~~f~EKp~~~~a-----~~~~~~------g~y~~n~Giy~~~~~~ll~~l~~~  207 (336)
T 2x65_A          146 ---ETGYG----YIEIGEELEEGVHKVAQFREKPDLETA-----KKFVES------GRFLWNSGMFLWKAREFIEEVKVC  207 (336)
T ss_dssp             ---CSSSE----EEEEEEEEETTEEEEEEEEESCCHHHH-----HHHHHH------TCEEEEEEEEEEEHHHHHHHHHHH
T ss_pred             ---CCCce----EEEECCccCCCccEEEEEEECCChHHH-----HHHHhc------CCeEEEeeeEEEEHHHHHHHHHHH
Confidence               24676    6766631    2789999999862100     001110      01366799999999887 444321


Q ss_pred             CC--hhhH------HHHhhhhhhhc----------cccCceEEEEEccccchhhccChhhHHHHhhh
Q 007143          252 FD--YQHL------RRHFVKGLLLD----------DIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD  300 (616)
Q Consensus       252 fd--~q~l------r~dfv~~~l~~----------~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d  300 (616)
                      ..  ++..      ..+|+..++..          ...+.+++++.++ ++|.+|++|.+|.++ +|
T Consensus       208 ~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~-~~W~DiGt~~~l~~~-~d  272 (336)
T 2x65_A          208 EPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKAD-FEWSDLGNWSSVREI-EG  272 (336)
T ss_dssp             CHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECS-SCCBCCCSHHHHHHH-HC
T ss_pred             CHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEec-CCCcCCCCHHHHHhh-hc
Confidence            10  0000      00344433332          1235789999987 899999999999998 55

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.84  E-value=1.5e-20  Score=197.77  Aligned_cols=237  Identities=14%  Similarity=0.183  Sum_probs=160.5

Q ss_pred             CeEEEEEeCCCCCCCCCCC-CCCCcccceeCC-eehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCc
Q 007143           28 PLQAILLADSFTTKFRPIT-LERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT-~~~PK~Llpi~g-~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~  103 (616)
                      .|.+||||+|.|+||+|+| ...||+|+|++| +|||+|+++.|..+ |+++|+|++++. ...+.+++..        .
T Consensus         2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--------~   73 (337)
T 2cu2_A            2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--------I   73 (337)
T ss_dssp             CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--------S
T ss_pred             CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--------C
Confidence            4899999999999999999 689999999999 99999999999998 899999999875 5666666543        2


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhcccc-cCC-EEEEeCceecc--hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH  179 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~i~~--~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~  179 (616)
                      .+  +.++..+|++.++......... .++ ||+++||++..  ..|..+++...+..+  .++.+|+.+++..+     
T Consensus        74 ~~--i~e~~~~gta~ai~~a~~l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~--~~~~vt~~i~p~~~-----  144 (337)
T 2cu2_A           74 RL--LLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAE--EGFVVALGLRPTRP-----  144 (337)
T ss_dssp             EE--EEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCC--TTCEEEEEECCSSC-----
T ss_pred             ce--EecCCCCCcHHHHHHHHHHhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHH--cCCeEEEeeccCCC-----
Confidence            33  4456678999988865430001 133 99999999653  356666665433221  14788998887653     


Q ss_pred             ccccCCCceEEEEeCC---CCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCC--
Q 007143          180 QSRLGTDELFMAIDPN---TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFD--  253 (616)
Q Consensus       180 ~~r~~~~~~vv~id~~---~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd--  253 (616)
                      .++||    ++..+.+   .++|..|.|||.....     ...+..       ..+.++|||+++++++ ..|.....  
T Consensus       145 ~t~yG----~I~~~~~~~~~~~V~~f~EKp~~~~a-----~~~~~~-------g~~~n~Giy~f~~~~ll~~l~~~~p~~  208 (337)
T 2cu2_A          145 ETEYG----YIRLGPREGAWYRGEGFVEKPSYAEA-----LEYIRK-------GYVWNGGVFAFAPATMAELFRRHLPSH  208 (337)
T ss_dssp             CSSSC----EEEEEEEETTEEEEEEEECCCCHHHH-----HHHHHT-------TCEEEEEEEEECHHHHHHHHHHHCHHH
T ss_pred             CCCce----EEEECCcccccCeEEEEEeCCChHHH-----HHHhhc-------CCEEEEEEEEEeHHHHHHHHHHHCHHH
Confidence            24677    7776632   2789999999852100     011110       0367899999999987 55543210  


Q ss_pred             hhhHH--------HHhhhhhhh------ccccCceEEEEEccccchhhccChhhHHHHh
Q 007143          254 YQHLR--------RHFVKGLLL------DDIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       254 ~q~lr--------~dfv~~~l~------~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                      ++..+        .+.+..+-.      -...+.+++++.++ ++|.+|++|.+|+++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~-~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          209 HEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGR-FPWDDVGNWRALERVF  266 (337)
T ss_dssp             HHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEEC-SCEECCCSTTHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeC-CcEEcCCCHHHHHHHh
Confidence            11111        111221100      01245689999887 8999999999999874

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.78  E-value=1.2e-17  Score=168.63  Aligned_cols=241  Identities=13%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +++.|||||+|.|+||.      ||+|+||+|+|||+|+++.+..+|+++|+|++.  .+.+++++..  +    ++++.
T Consensus         8 M~~~aIIlA~G~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~--~----g~~v~   73 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED--F----GAVVC   73 (256)
T ss_dssp             -CCEEEEECCCC---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--T----TCEEE
T ss_pred             CCceEEEEcCCCCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH--c----CCeEE
Confidence            45899999999999994      899999999999999999999999999999886  3788888865  2    35555


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      +..++...|++.+...+.....-..+ |+++.||.  +....+..+++.|++.    +++.+++++.+...     ..++
T Consensus        74 ~~~~~~~~Gt~~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~----~~~~~a~l~~~v~~-----~~~~  144 (256)
T 3tqd_A           74 MTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEH----DNVKVASLCTPITE-----VDEL  144 (256)
T ss_dssp             ECCTTCCSHHHHHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHC----C--CEEEEEEECCC-----HHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhC----CCCCEEEEeeEcCC-----HHHh
Confidence            44445556777633322211111234 99999999  5577899999999763    23444444444321     1122


Q ss_pred             CC-CceEEEEeCCCCeEEEeeecCCCCCcc-eEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHH-HH
Q 007143          184 GT-DELFMAIDPNTKQLLYYEDKADHSKGT-ICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLR-RH  260 (616)
Q Consensus       184 ~~-~~~vv~id~~~~rvl~~~e~p~~~~~~-~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr-~d  260 (616)
                      .+ +..-+++| .++++++|.++|.+.... +.-...+...      .+.+...|||.+++++|..|..--.- .+. .+
T Consensus       145 ~~p~~vkvv~d-~~g~~l~fsr~pip~~r~~~~~~~~~~~~------~~~~~~~GiY~y~~~~l~~~~~l~~s-~lE~~e  216 (256)
T 3tqd_A          145 FNPHSTKVVLN-RRNYALYFSHAPIPWGRDTFSDKENLQLN------GSHYRHVGIYAYRVGFLEEYLSWDAC-PAEKME  216 (256)
T ss_dssp             TCTTSCEEEEC-TTSBEEEEESSCSSCCTTTTTCGGGCCCS------SCCEEEEEEEEEEHHHHHHHHHSCCC-HHHHHH
T ss_pred             hCCCccEEEEC-CCCEEeEEecCCCCCCCcccccccccccC------CcceEEEEEEEcCHHHHHHHHhCCCC-cccchh
Confidence            21 11235677 489999999987632110 0000000000      13577899999999999988753111 111 11


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      .+..+ .-...|.+|+++.++..+|.+|+++++|..+.+
T Consensus       217 ~leql-r~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~  254 (256)
T 3tqd_A          217 ALEQL-RILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA  254 (256)
T ss_dssp             TCTTH-HHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred             hhHHH-HHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence            11111 112368899999987445899999999998754

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.78  E-value=1.2e-17  Score=169.42  Aligned_cols=241  Identities=15%  Similarity=0.110  Sum_probs=158.4

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.+.|||||+|.|+|| |     +|+|+||+|+|||+|+++.+..+|+++|+|++.  .+.+++++..  +    ++++
T Consensus        16 ~M~~~aIIlA~G~stRl-p-----~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~--~----g~~v   81 (264)
T 3k8d_A           16 HMSFVVIIPARYASTRL-P-----GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA--A----GGEV   81 (264)
T ss_dssp             --CCEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--T----TCEE
T ss_pred             CCceEEEEEcCCCCCCC-C-----CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH--c----CCEE
Confidence            34589999999999999 3     599999999999999999999999999999885  4778888765  2    3455


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      .+..++...|++.....+........+ ||++.||.  +....+..+++.|++.     ++.++++..+..     ...+
T Consensus        82 ~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~-----~~~~~~~~~~v~-----d~~~  151 (264)
T 3k8d_A           82 CMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR-----QVGMATLAVPIH-----NAEE  151 (264)
T ss_dssp             EECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS-----SCSEEEEEEECC-----SHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc-----CCCEEEEEEEcC-----CHHH
Confidence            444455566777633332221112334 99999998  6678999999999753     466676666654     2223


Q ss_pred             cCCCc-eEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHH-HH
Q 007143          183 LGTDE-LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLR-RH  260 (616)
Q Consensus       183 ~~~~~-~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr-~d  260 (616)
                      +++.. .-+++| .++++++|.++|.+..+      +-+.....-.-...+...|||.++++++..|..--. ..+. .+
T Consensus       152 ~~~p~~vkVv~d-~~g~~l~fsr~~ip~~r------~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~-~~lE~~e  223 (264)
T 3k8d_A          152 AFNPNAVKVVLD-AEGYALYFSRATIPWDR------DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQP-SPLEHIE  223 (264)
T ss_dssp             HTCTTSCEEEEC-TTSBEEEEESSCCSCCH------HHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCC-CHHHHHH
T ss_pred             ccCCCceEEEEC-CCCeEEEEecCCCCCCC------ccccccccccCCcceEEEEEEEECHHHHHHHHhCCC-ChhhhHH
Confidence            33222 234567 48999999998753211      111000000001356789999999999998864211 1111 11


Q ss_pred             hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      .+.. |.-...|.+|+++...+.+|..|+++++|..+.+
T Consensus       224 ~leq-lr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~  261 (264)
T 3k8d_A          224 MLEQ-LRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA  261 (264)
T ss_dssp             TCTT-HHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHH
T ss_pred             HHHH-HHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHH
Confidence            1111 1111358899999776578999999999998764

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.74  E-value=9.5e-17  Score=159.36  Aligned_cols=226  Identities=17%  Similarity=0.117  Sum_probs=150.7

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      ++.|||||+|.|+||+      ||+|+|++|+|||+|+++.|..+ +++|+|++++  +++.+++.+  +     ..+.+
T Consensus         2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~--~-----~~~~~   65 (234)
T 2y6p_A            2 RRAVIIPARLGSTRLK------EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS--ERVKEVVED--L-----CEVFL   65 (234)
T ss_dssp             CEEEEEECCSCCTTTT------TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT--T-----SEEEE
T ss_pred             ceEEEEEcCCCCCCCC------CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh--c-----eEEEE
Confidence            4789999999999997      89999999999999999999999 9999999876  678888754  1     23433


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce-ecc-hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT-VSN-MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~-i~~-~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      .......|++.++..+   ..+..+ |+++.||+ +.+ .++..+++.|++..     ..+|++.....     ....++
T Consensus        66 ~~~~~~~g~~~~~~~~---~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~-----~~~~~~~~~~~-----~~~~~~  132 (234)
T 2y6p_A           66 TPSDLPSGSDRVLYVV---RDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGE-----RVVTLARKDKE-----AYERPE  132 (234)
T ss_dssp             CCTTCCSHHHHHHHHH---TTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTC-----SEEEEEEECSG-----GGGCTT
T ss_pred             CCcccccchHHHHHHH---HhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCC-----CeEEEecCCHH-----HhcCCC
Confidence            2233456777776532   233444 99999999 766 78999999997642     46676665211     001111


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                        ..-+.++ .++++..+.++|.+.....          ...   ..+...|+|+++++++..+........-..+++..
T Consensus       133 --~~~~~~~-~~g~v~~~~e~~~~~~~~~----------~~~---~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~  196 (234)
T 2y6p_A          133 --DVKVVLD-REGYALYFSRSPIPYFRKN----------DTF---YPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQ  196 (234)
T ss_dssp             --SCEEEEC-TTSBEEEEESSCCSCCSSC----------CSS---CCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTH
T ss_pred             --ceEEEEc-CCCCEeeeecCCCCccccc----------ccc---eeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHH
Confidence              1123345 4689999988764210100          000   23457899999999887654321110001233322


Q ss_pred             hhhccccCceEEEEEccccchhhccChhhHHHHhhh
Q 007143          265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD  300 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d  300 (616)
                       +.....|.+++++..+ ++|.+|+++++|..++..
T Consensus       197 -~~~~~~g~~v~~~~~~-~~~~dI~t~~dl~~a~~~  230 (234)
T 2y6p_A          197 -LRLLENGIKIKVLITE-NYYHGVDTEEDLKIVEEK  230 (234)
T ss_dssp             -HHHHHTTCCCEEEECC-SCCCCCCSHHHHHHHHHH
T ss_pred             -HHHHHCCCeEEEEEeC-CcccCCCCHHHHHHHHHH
Confidence             1111247899999998 899999999999988654

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.73  E-value=3.5e-17  Score=162.70  Aligned_cols=211  Identities=14%  Similarity=0.177  Sum_probs=128.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .|.|||||+|.|+||+|+    ||+|+|++|+|||+|+++.|..+ +++|+|++ +..+++.+++.. .|    +..+.+
T Consensus        18 ~~~~iIlA~G~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~-~~----~~~~~~   86 (232)
T 2xme_A           18 LMKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK-DK----GFNYKI   86 (232)
T ss_dssp             CEEEEEEECC------CC----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT-TS----CCCEEE
T ss_pred             cceEEEECCcCcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH-hc----CCcEEE
Confidence            489999999999999986    99999999999999999999999 99999998 667778777643 33    245677


Q ss_pred             EeCCCc-cCHHHHHHHHHhcccccCCEEEEeCceecchhH-HHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IESHNI-ISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL-TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~~~~~-~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l-~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      +.++.. .|++++++.  +...+.++|++++||+..+.++ +.+++    ..     .  +++.......   ....+  
T Consensus        87 v~~~~~~~g~~~~i~~--a~~~~~~~~lv~~~D~p~~~~~~~~l~~----~~-----~--~~~~~~~~~~---~~~~~--  148 (232)
T 2xme_A           87 VRHDRPEKGNGYSLLV--AKNHVEDRFILTMGDHVYSQQFIEKAVR----GE-----G--VIADREPRFV---DIGEA--  148 (232)
T ss_dssp             EECSCGGGCHHHHHHT--TGGGCCSSEEEEETTEEECHHHHHHHTT----CC-----E--EEEESSCSSS---CTTTS--
T ss_pred             EECCCCCCCcHHHHHH--HHHHCCCCEEEEcCCcccCHHHHHHHHh----CC-----C--cEEEcccccc---CCCcc--
Confidence            765544 788888885  3444566799999999766553 44432    11     1  2222221100   01112  


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL  265 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~  265 (616)
                        ..+..+  ++++..+.+++.                     +++++.+|+|+++|++++.+.+...-.   ...+..+
T Consensus       149 --~~v~~~--~g~v~~~~~~~~---------------------~~~~~~~g~~~~~~~~~~~l~~~~~~g---~~~l~~l  200 (232)
T 2xme_A          149 --TKIRVE--DGRVAKIGKDLR---------------------EFDCVDTGFFVLDDSIFEHAEKLRDRE---EIPLSEI  200 (232)
T ss_dssp             --CEEEEE--TTEEEEEETTCS---------------------SCSEEEEEEEEECTTHHHHHGGGTTSS---CCCHHHH
T ss_pred             --eEEEEc--CCEEEEeecCCC---------------------CcceEEEEEEEECHHHHHHHHHHHhcC---hhHHHHH
Confidence              245555  578888887653                     124557899999999998776532000   0112223


Q ss_pred             hhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       266 l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      +..    .++..+.+++++|.+|+++++|..+++
T Consensus       201 l~~----~~v~~~~~~~~~~~dI~tpeDl~~a~~  230 (232)
T 2xme_A          201 VKL----ARLPVTYVDGELWMDVDTKEDVRRANR  230 (232)
T ss_dssp             HHH----HTCBEEECCSCCEEEEECC--------
T ss_pred             HHc----CCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence            322    135555665578999999999987654

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.71  E-value=4.5e-17  Score=173.71  Aligned_cols=74  Identities=15%  Similarity=0.062  Sum_probs=42.9

Q ss_pred             EEEEeCceecch--hHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeCCC-CeEEEeeecCCCC
Q 007143          133 FVLISGDTVSNM--LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT-KQLLYYEDKADHS  209 (616)
Q Consensus       133 fLlv~gD~i~~~--~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~-~rvl~~~e~p~~~  209 (616)
                      =|+--||+++++  +|.+++++|.          .|+..   .+    ....++    +..++... ++| .|.++|...
T Consensus        13 ~~~~~~dhiy~m~~~l~~i~~~h~----------~tl~g---~~----~~~~~G----v~~ld~a~~g~I-~F~ekPk~~   70 (374)
T 2iu8_A           13 GLVPRGSHMSQSTYSLEQLADFLK----------VEFQG---NG----ATLLSG----VEEIEEAKTAHI-TFLDNEKYA   70 (374)
T ss_dssp             --------CCSCCEEHHHHHHHTT----------CEEES---CT----TCEECE----ECCTTTCCTTEE-EECCSSSTH
T ss_pred             CcccCccccccCcCcHHHHHHhhC----------CEEEC---CC----cceEEE----EeccccCCCCeE-EEEeCchhh
Confidence            456678999997  9999999885          14443   11    233455    55666433 566 999987521


Q ss_pred             CcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh
Q 007143          210 KGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS  246 (616)
Q Consensus       210 ~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~  246 (616)
                             +.           ..+..+++||++++++.
T Consensus        71 -------~~-----------~~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           71 -------KH-----------LKSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             -------HH-----------HHTCCCSEEEEEHHHHH
T ss_pred             -------hh-----------hhcCCcEEEEeChhHhh
Confidence                   11           14567899999998774

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.69  E-value=2.3e-15  Score=152.42  Aligned_cols=239  Identities=13%  Similarity=0.107  Sum_probs=147.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      ++.|||||+|.|+|| |     +|+|+|++|+|||+|+++.|..+|+++|+|++++  +.+.+++...      ++.+  
T Consensus         2 ~~~aiIlA~G~g~R~-~-----~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~~------~~~~--   65 (262)
T 1vic_A            2 SFTVIIPARFASSRL-P-----GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF------GAEV--   65 (262)
T ss_dssp             CCEEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT------TCEE--
T ss_pred             CcEEEEEcCCCCCCC-C-----CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHhc------CCEE--
Confidence            478999999999999 4     5999999999999999999999999999999875  5677777641      3343  


Q ss_pred             EeC--CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143          108 IES--HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR  182 (616)
Q Consensus       108 i~~--~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r  182 (616)
                      +..  ....|++.+...+........+ ||++.||+  +...++..+++.|++..     +.+++++.+.....  ....
T Consensus        66 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~-----~~~~~~~~~~~~~~--~~~~  138 (262)
T 1vic_A           66 CMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN-----VNMASLAVKIHDAE--ELFN  138 (262)
T ss_dssp             EECCCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHT-----CSEEEEEEECCCHH--HHTC
T ss_pred             EECCccccCChHHHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcC-----CCEEEEEEecCCHH--HhcC
Confidence            432  2345666332222221212334 89999998  56779999999988752     34444444432100  0001


Q ss_pred             cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhh--------hcCCceEEEeccccceeEeeCHhHHhhhhcCCCh
Q 007143          183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLL--------AENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY  254 (616)
Q Consensus       183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~--------~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~  254 (616)
                      ++  -..+..+ ..++++.|.+++-+..      ..-.        ...|.    ..+.+.|+|+++++++..+......
T Consensus       139 ~~--~~~~~~~-~~g~v~~f~~~~~~~~------r~~~~~~~~~~~~~~p~----~~~~~~giy~~~~~~l~~~~~~~~~  205 (262)
T 1vic_A          139 PN--AVKVLTD-KDGYVLYFSRSVIPYD------RDQFMNLQDVQKVQLSD----AYLRHIGIYAYRAGFIKQYVQWAPT  205 (262)
T ss_dssp             TT--SCEEEEC-TTSBEEEEESSCSSCC------HHHHTTCSCGGGCCCCT----TCEEEEEEEEEEHHHHHHHHHSCCC
T ss_pred             CC--ceEEEEC-CCCCEeeeecCCCCcC------Ccccccccccccccccc----ceEEEEEEEEeeHHHHHHHHhCCCC
Confidence            11  0123335 4678888877642110      1100        01111    1356789999999988765321100


Q ss_pred             hhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       255 q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      ..-...++..+ .-...|.+++++..++.+|.+|+++++|..+...+-.
T Consensus       206 ~~~~~e~~~~~-~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~  253 (262)
T 1vic_A          206 QLENLEKLEQL-RVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA  253 (262)
T ss_dssp             HHHHHHTCTTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHH-HHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence            00001112111 1011478999999865799999999999988776543

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.69  E-value=1.1e-15  Score=154.14  Aligned_cols=243  Identities=12%  Similarity=0.068  Sum_probs=153.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHH-HHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTL-AWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~L-e~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      +.|||||+|.|+||.      +|+|+||+|+|||+|++ +.+..+++++|+|++++  +.+.+++..  +    ++++..
T Consensus         2 ~~aiIlA~G~stR~~------~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~--~----g~~v~~   67 (253)
T 4fcu_A            2 KHIVIPARFSSSRLP------GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA--E----GVDVVL   67 (253)
T ss_dssp             EEEEEECCSCCTTST------TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT--T----TCCEEE
T ss_pred             eEEEEEeCCCCCCCC------CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH--c----CCeEEE
Confidence            469999999999997      59999999999999999 99999999999999964  778887754  1    344443


Q ss_pred             EeCCCccCHHHHHHHHHhc-ccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          108 IESHNIISAGDALRLIYEQ-NVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~-~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      ..+....|++ ++...... .....+ ||++.||.  +....+..+++.|++..   ...++|++.+-..+.   ....+
T Consensus        68 ~~~~~~~Gt~-~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~---~~~~at~~~~~~~~~---~~~~p  140 (253)
T 4fcu_A           68 TSADHPSGTD-RLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKP---NCSMSTLCEPIHALD---EFQRD  140 (253)
T ss_dssp             CCTTCCCHHH-HHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCT---TCSEEEEEEECCCHH---HHHCT
T ss_pred             eCCCCCChHH-HHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCC---CCCEEEEeEEcCCHH---HccCC
Confidence            3333444553 33332211 111234 99999999  56679999999998742   124566665421110   00011


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH-HHHhh
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL-RRHFV  262 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l-r~dfv  262 (616)
                      +  ..-++.| .++++++|.++|-+..+.      -+.......-...+.+.|||.+++++|..|.....- .+ ..+.+
T Consensus       141 ~--~~kvv~d-~~g~~l~fsr~~ip~~r~------~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~-~le~~e~l  210 (253)
T 4fcu_A          141 S--IVKVVMS-KQNEALYFSRATIPYDRD------GAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMG-KLEKLESL  210 (253)
T ss_dssp             T--SCEEEEC-TTSBEEEEESSCCSCCTT------TSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCC-HHHHHHTC
T ss_pred             C--ccEEEEC-CCCeEEEecCCCCCCCCC------cccccccccccceeEEEEEEEeCHHHHHHHHhCCCC-cccchhHH
Confidence            1  1124566 489999999977532111      000000000012355889999999999988742111 11 11212


Q ss_pred             hhhhhccccCceEEEEEccccc-hhhccChhhHHHHhhhhhcc
Q 007143          263 KGLLLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDIIQR  304 (616)
Q Consensus       263 ~~~l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~dil~r  304 (616)
                      ..+ .-...|.+|+++..+ .+ |.+|+++++|..+.+.+-+|
T Consensus       211 e~l-r~l~~G~~I~~~~~~-~~~~~~IdtpeDL~~a~~~l~~r  251 (253)
T 4fcu_A          211 EQL-RVLENGHRIAIAVAE-ANLPPGVDTQADLDRLNNMPVES  251 (253)
T ss_dssp             TTH-HHHHTTCCEEEEECS-SCCCCCCCSHHHHHHHHTSCGGG
T ss_pred             HHH-HHHHCCCceEEEEeC-CCCCCCCCCHHHHHHHHHHHHhh
Confidence            111 111268899999986 78 99999999999997765444

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.69  E-value=1.4e-15  Score=152.04  Aligned_cols=227  Identities=15%  Similarity=0.153  Sum_probs=146.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCC-cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGV-AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv-~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ++.|||||+|.|+|| |     ||+|+|++|+|||+|+++.+..+|+ ++|+|++++  +++.+++...      ++.+ 
T Consensus         2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~------~~~~-   66 (245)
T 1h7e_A            2 KAVIVIPARYGSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF------GGKA-   66 (245)
T ss_dssp             CEEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT------TCEE-
T ss_pred             CeEEEEEcCCcCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc------CCeE-
Confidence            478999999999999 6     9999999999999999999999996 999999976  7788887652      2333 


Q ss_pred             EEe--CCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          107 TIE--SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       107 ~i~--~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                       +.  ++...|++.++..+..   +..+ |+++.||+  +....+..+++.|++.    +++.+++.+.+..+.   ...
T Consensus        67 -~~~~~~~~~g~~~~~~~~~~---~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~---~~~  135 (245)
T 1h7e_A           67 -IMTRNDHESGTDRLVEVMHK---VEADIYINLQGDEPMIRPRDVETLLQGMRDD----PALPVATLCHAISAA---EAA  135 (245)
T ss_dssp             -EECCSCCSSHHHHHHHHHHH---SCCSEEEECCTTCTTCCHHHHHHHHHHHHHC----TTCCEEEEEEEECHH---HHT
T ss_pred             -EeCCCccCCcHHHHHHHHHh---CCCCEEEEEcCCcCcCCHHHHHHHHHHHHhC----CCCCEEEEeecCCHH---Hhc
Confidence             43  2345677777664432   2444 89999998  5567899999998764    124444444333211   000


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHh
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF  261 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~df  261 (616)
                      .++  ..-+..+ ..++++.|.+++.+....     .   ..+     ..+...|+|+++++++..+.. ..-.   .-.
T Consensus       136 ~~~--~~~~~~~-~~g~~~~~~~~~~~~~r~-----~---~~~-----~~~~~~g~y~~~~~~l~~~~~-~~~~---~~~  195 (245)
T 1h7e_A          136 EPS--TVKVVVN-TRQDALYFSRSPIPYPRN-----A---EKA-----RYLKHVGIYAYRRDVLQNYSQ-LPES---MPE  195 (245)
T ss_dssp             CTT--SCEEEEC-TTCBEEEEESSCSSCCTT-----G---GGC-----CEEEEEEEEEEEHHHHHHGGG-SCCC---HHH
T ss_pred             CCC--CcEEEEC-CCCcEEEeecCCCCCCcc-----c---ccC-----ceeEEEEEEEcCHHHHHHHHh-CCCC---ccc
Confidence            111  1112224 467888888764321110     0   000     134578999999998754331 1100   001


Q ss_pred             hhhhhhcc---ccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          262 VKGLLLDD---IMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       262 v~~~l~~~---i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      +.+.+...   ..|.+++++..+ ++|.+|+++++|..+...+
T Consensus       196 ~td~~~~~~~~~~g~~v~~~~~~-~~~~dIdtp~Dl~~a~~~l  237 (245)
T 1h7e_A          196 QAESLEQLRLMNAGINIRTFEVA-ATGPGVDTPACLEKVRALM  237 (245)
T ss_dssp             HHHTCTTHHHHHTTCCEEEEECC-CCCCCSSSHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHCCCeEEEEEeC-CCCCCCCCHHHHHHHHHHH
Confidence            12222221   147899999987 8999999999999886654

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.68  E-value=1.8e-16  Score=158.65  Aligned_cols=168  Identities=21%  Similarity=0.216  Sum_probs=122.5

Q ss_pred             Hhhhhhhhc-c-ccCceEEEEEccccc----hhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCC
Q 007143          260 HFVKGLLLD-D-IMGYKIFTHEIHSSY----AARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALE  333 (616)
Q Consensus       260 dfv~~~l~~-~-i~g~~I~~~~~~~~y----~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~  333 (616)
                      .|+++.+.. + ....+++++... +|    |.++++   |..+++.++..+.. ..+..+ ..      .....+.+.+
T Consensus        24 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~w~di~~---~l~~n~~~l~~~~~-~~~~~~-~~------~~~~~~~~~~   91 (240)
T 3r8y_A           24 VYIKGDLKEVTFPETVQAFVNKKS-GVLFGEWSEIKT---ILDENSKYIVDYVV-ENDRRN-SA------IPMLDLKGIK   91 (240)
T ss_dssp             EEEEECGGGCCCCTTSEEEECSSE-EEEEEEHHHHHH---HHHHTTTTEEEEEE-EECCBS-BC------SCBCCCTTCS
T ss_pred             EEEeccccccccCCcceEEEcCCC-eEEEccHHHHHH---HHHhccceechhhh-hhhhhh-hc------cchhhccCCC
Confidence            444544433 1 234567776654 45    888876   77788877743211 111110 00      0112234567


Q ss_pred             cEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCC
Q 007143          334 IEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VIVCDG  402 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------siIg~~  402 (616)
                      +.|++++.|++++.||++|.|++++.| .+++||++|.|+.+|.|. +++||++|.|+.++.+.+         ++|+++
T Consensus        92 ~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~  171 (240)
T 3r8y_A           92 ARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD  171 (240)
T ss_dssp             SEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTT
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCC
Confidence            888888999999999999999999999 589999999999999996 899999999999999977         899999


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      |+||.+++|.++++||++|+|+++++|    |+++++...|
T Consensus       172 ~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~~G~P  212 (240)
T 3r8y_A          172 VVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTP  212 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETT
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEEEccC
Confidence            999999999888999999888888875    4566655443

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.67  E-value=5.9e-16  Score=149.47  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=106.4

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe------ceEECCCCEECCC
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE------GSYIWDNVIIEDG  391 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~------~s~I~~~v~Ig~~  391 (616)
                      .+.....++++++.|++++.|.+++.||++|.|++++.|.    +++||++|.|+++|.|.      +++|+++|.|+.+
T Consensus        28 ~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~  107 (191)
T 3ixc_A           28 PYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHS  107 (191)
T ss_dssp             CBTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTT
T ss_pred             cccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCC
Confidence            3445677899999999999999999999999999999995    45899999999999997      8999999999999


Q ss_pred             cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       392 ~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      +.|.+++||++|+||.+++|.++++||++|+|+++++|.++..|...
T Consensus       108 ~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~  154 (191)
T 3ixc_A          108 CILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSG  154 (191)
T ss_dssp             CEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCC
Confidence            99999999999999999999999999999999999998887777543

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.66  E-value=1.1e-15  Score=145.12  Aligned_cols=112  Identities=14%  Similarity=0.175  Sum_probs=102.7

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~  396 (616)
                      ....+++++.|++++.|.+++.||++|.|+++++|..    ++||++|.|+++|.|.     +++|++++.|+.++.|.+
T Consensus        11 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~   90 (173)
T 1xhd_A           11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (173)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             CCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeC
Confidence            4566899999999999999999999999999999964    8999999999999998     899999999999999999


Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++||++|+||.++.|.++++||++++|+++++|.++..+..
T Consensus        91 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~  131 (173)
T 1xhd_A           91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPP  131 (173)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCC
Confidence            99999999999999999999999999999998877766654

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.66  E-value=1.1e-15  Score=148.05  Aligned_cols=115  Identities=22%  Similarity=0.240  Sum_probs=101.7

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----------------ceEE
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------------GSYI  382 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----------------~s~I  382 (616)
                      ..+++.+++++.|++++.|++++.||++|.|+++++|.    +++||++|.|+++|+|.                 .++|
T Consensus         9 ~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~I   88 (194)
T 3tv0_A            9 TQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMII   88 (194)
T ss_dssp             ---CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEE
T ss_pred             cCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEE
Confidence            34688999999999999999999999999999999994    57999999999999995                 3689


Q ss_pred             CCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       383 ~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ++++.|+.++.+.++.||++++|+.+++|++|++||++|+||++++|.++++|...
T Consensus        89 g~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~  144 (194)
T 3tv0_A           89 GTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPEN  144 (194)
T ss_dssp             CSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTT
T ss_pred             CCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCC
Confidence            99999999999999999999999999999999999999999999887777666543

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.66  E-value=1e-15  Score=147.03  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=105.7

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE------------eceEECCCC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI------------EGSYIWDNV  386 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I------------~~s~I~~~v  386 (616)
                      +......+++++.|++.+.|.+++.||++|.|+++++|.    +++||++|.|+++|.|            .+++|+++|
T Consensus        11 ~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~   90 (187)
T 3r3r_A           11 YKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDV   90 (187)
T ss_dssp             BTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSC
T ss_pred             hcccCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCC
Confidence            444566789999999999999999999999999999996    3599999999999999            689999999


Q ss_pred             EECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          387 IIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       387 ~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .|+.+|.|.+++||++|+||.+++|.++++||++|+||++++|.++..|...
T Consensus        91 ~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~  142 (187)
T 3r3r_A           91 TVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESG  142 (187)
T ss_dssp             EECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTT
T ss_pred             EECCCCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCC
Confidence            9999999999999999999999999999999999999999998888777653

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.65  E-value=1.6e-16  Score=173.52  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143          328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA  407 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~  407 (616)
                      ..+++++.|++.+.|.+++.||++|.|++++.|++++||++|.|+++|+|.+++||++|.|+.++.|.+++||++|+||+
T Consensus       274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~  353 (496)
T 3c8v_A          274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGF  353 (496)
T ss_dssp             --CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECT
T ss_pred             cccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECC
Confidence            44677888888999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEECCC----CEECCCcEECCCCEEC--CCCEEccc
Q 007143          408 GAVLKPG----VVLSFKVVIGERFVVP--AHSKVSLL  438 (616)
Q Consensus       408 ~~~I~~g----~vIg~~v~Ig~~~~v~--~~~~v~~~  438 (616)
                      +|+|.++    ++||++|+||++++|.  ++..|+..
T Consensus       354 ~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~  390 (496)
T 3c8v_A          354 NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAG  390 (496)
T ss_dssp             TCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSS
T ss_pred             CCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCC
Confidence            9999988    8999999999988877  66666543

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.65  E-value=2e-15  Score=143.41  Aligned_cols=112  Identities=20%  Similarity=0.171  Sum_probs=102.6

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~  396 (616)
                      ....+++++.|++++.|.+++.||++|.|++++.|..    ++||++|.|+++|.|.     +++|++++.|+.+|.|.+
T Consensus         9 ~~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~   88 (173)
T 1v3w_A            9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG   88 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred             CCCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC
Confidence            3456889999999999999999999999999999964    8999999999999997     599999999999999999


Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++||++|+||.++.|.++++||++++||++++|.++..|+.
T Consensus        89 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~  129 (173)
T 1v3w_A           89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPD  129 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECT
T ss_pred             CEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCC
Confidence            99999999999999999999999999999998887777754

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.64  E-value=1.2e-15  Score=148.85  Aligned_cols=105  Identities=22%  Similarity=0.249  Sum_probs=89.0

Q ss_pred             cceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe-ceEECCCCEECCCCEE----eceEECCCCEECCCcEE----
Q 007143          326 RGMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI----EGSYIWDNVIIEDGCEL----  394 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I----~~s~I~~~v~Ig~~~~I----  394 (616)
                      +...+++++.|++++.|..  ++.||++|.|+++|+|. +++||++|.|+++|.|    ++++|+++|.|+.+|.|    
T Consensus        31 ~~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~  110 (205)
T 3vbi_A           31 GFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAI  110 (205)
T ss_dssp             CCSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEE
T ss_pred             CCeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCC
Confidence            4566889999999999987  89999999999999996 8999999999999999    34999999999999999    


Q ss_pred             ----------------------eceEECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          395 ----------------------RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       395 ----------------------~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                                            .+++||++|+||.+++|.+|++||++|+||++++|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~  168 (205)
T 3vbi_A          111 DDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVK  168 (205)
T ss_dssp             CCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred             CCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEEC
Confidence                                  457777777777777777777777777777777653

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.64  E-value=2.4e-15  Score=144.64  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEece------------EECCCCEEC
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEGS------------YIWDNVIIE  389 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~s------------~I~~~v~Ig  389 (616)
                      ....+++++.|++.+.|++++.||++|.|++++.|.    +++||++|.|+++|.|..+            +|+++|.|+
T Consensus        18 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig   97 (189)
T 3r1w_A           18 ISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIG   97 (189)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEEC
T ss_pred             cCCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEEC
Confidence            345689999999999999999999999999999995    3599999999999999764            999999999


Q ss_pred             CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .+|.|.+++||++|+||.+++|.++++||++|+||++++|.++..|...
T Consensus        98 ~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~  146 (189)
T 3r1w_A           98 HQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESG  146 (189)
T ss_dssp             TTCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCC
Confidence            9999999999999999999999999999999999999998887777543

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.60  E-value=1.6e-15  Score=158.25  Aligned_cols=142  Identities=14%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             chhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeec-ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEec
Q 007143          284 YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERR-GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD  362 (616)
Q Consensus       284 y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~-~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~  362 (616)
                      ..+||.+|++|..++++.+.+|.+   |+.++... .-.+..+ .+.+++++.|.++++|++++.||++|+|+++|+|.+
T Consensus        25 ~l~ri~al~~f~~v~~g~lgg~i~---~e~nl~~~-~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~  100 (334)
T 2pig_A           25 LLRQVIAVTDFNDVKAGTSGGWVD---ADNVLSQQ-GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDR  100 (334)
T ss_dssp             EEEEEEESSCBTTBCTTCEEEEES---STTSBCSS-SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEES
T ss_pred             EEEEEEEeeccccccCCccCCeEe---ccCCcccC-CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEe
Confidence            457999999999999999999996   44444332 1234445 677788888888888888999999999999999999


Q ss_pred             eEECCCCEECCCCEEeceEECCCCEECCC----------------------------cEEeceEECCCcEECCCCEECCC
Q 007143          363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDG----------------------------CELRHVIVCDGVIMKAGAVLKPG  414 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~----------------------------~~I~~siIg~~v~Ig~~~~I~~g  414 (616)
                      |+||++|.|+++++|.++.|+.++.|+.+                            ++|.+++|+.+|.|+.+|+|+ +
T Consensus       101 ~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~  179 (334)
T 2pig_A          101 ADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-H  179 (334)
T ss_dssp             CEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-S
T ss_pred             EEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-C
Confidence            99999999999998887665555554444                            444445555555555555555 5


Q ss_pred             CEECCCcEECCCCEEC
Q 007143          415 VVLSFKVVIGERFVVP  430 (616)
Q Consensus       415 ~vIg~~v~Ig~~~~v~  430 (616)
                      ++|++++.|+++++|.
T Consensus       180 svI~~~a~I~~~a~V~  195 (334)
T 2pig_A          180 AFIEHRAEVFDFALIE  195 (334)
T ss_dssp             EEECTTCEECTTCEEE
T ss_pred             cEEcCCCEECCCcEEC
Confidence            5555555555555543

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.60  E-value=1.2e-14  Score=140.20  Aligned_cols=116  Identities=21%  Similarity=0.260  Sum_probs=89.8

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEE-------
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCEL-------  394 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I-------  394 (616)
                      ..+++++++++.|.+.+.|++++.||++|.|++++.|. +++||++|.|+.+|.| .+++|++++.|+.++.+       
T Consensus        12 I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~   91 (192)
T 3mqg_A           12 VDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPR   91 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCB
T ss_pred             ECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCc
Confidence            34566677777777777777778888888888888886 4888888888888888 47788888888888777       


Q ss_pred             ---------eceEECCCcEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          395 ---------RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       395 ---------~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                               .+++||++|+||.+++|.+|++||++++|+++++|    |+++++...|
T Consensus        92 ~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~P  149 (192)
T 3mqg_A           92 AAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVP  149 (192)
T ss_dssp             TTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTT
T ss_pred             cccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccC
Confidence                     34788888999888888888888888888888874    4566665543

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.56  E-value=2.3e-14  Score=153.89  Aligned_cols=116  Identities=21%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec-----
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-----  396 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-----  396 (616)
                      ....+++++++++.|++++.|++++.||++|.|++++.|++++||++|.|++++.|.+++|+++|.||.++.|.+     
T Consensus       257 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~  336 (401)
T 2ggo_A          257 TYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDE  336 (401)
T ss_dssp             CEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTC
T ss_pred             CEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCC
Confidence            345678999999999999999999999999999999999999999999999999999999999999999999962     


Q ss_pred             ----eEECC----------CcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          397 ----VIVCD----------GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       397 ----siIg~----------~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                          +.+++          +++||++|+|+.+++|.++++||++++|+++++|+.
T Consensus       337 ~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~  391 (401)
T 2ggo_A          337 KEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNR  391 (401)
T ss_dssp             SCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEcc
Confidence                23332          566666666666666667777777777777777764

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.56  E-value=4.3e-14  Score=138.66  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEec---------------eEECCCC
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG---------------SYIWDNV  386 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~---------------s~I~~~v  386 (616)
                      ...+++++.|++++.|++++.||++|.|++++.|.     +++||++|.|+++|.|..               ++|+++|
T Consensus        39 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v  118 (213)
T 3kwd_A           39 EPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNV  118 (213)
T ss_dssp             CCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTC
T ss_pred             CCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCc
Confidence            34566777777777777777777777777777773     367777777777777763               6777777


Q ss_pred             EECCCcEEec-eEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          387 IIEDGCELRH-VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       387 ~Ig~~~~I~~-siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      .|+.+|.|.+ ++||++|+||++++|. +++||++|+||++++|
T Consensus       119 ~Ig~~~~I~~~v~Ig~~v~IG~~a~I~-~~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          119 SITHMALIHGPAYIGDGCFIGFRSTVF-NARVGAGCVVMMHVLI  161 (213)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEE
T ss_pred             EECCCcEEcCCCEECCCCEECCCCEEe-CcEECCCCEEcCCCEE
Confidence            7777777765 7777777777777765 3556666666665555

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.55  E-value=6.8e-14  Score=142.09  Aligned_cols=116  Identities=23%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE--------------eceEECCCCEECCCCEEec--------eE
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI--------------SDSVIGEGCTIGSNVLIEG--------SY  381 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I--------------~~s~IG~~~~Ig~~~~I~~--------s~  381 (616)
                      ..+++.+++++.|++++.|.+++.||++|.|++++.|              .+++||++|.|+++|+|..        ++
T Consensus        31 I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~  110 (266)
T 3r0s_A           31 VSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTR  110 (266)
T ss_dssp             ECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEE
T ss_pred             ECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEE
Confidence            3345555555555555555556666666666666666              3556666666666666642        56


Q ss_pred             ECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       382 I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ||+++.|+.++.| .++.||++++|+.++.|..+++||++|.||.+++|.++++|+...
T Consensus       111 IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a  169 (266)
T 3r0s_A          111 IGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGC  169 (266)
T ss_dssp             ECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             ECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCC
Confidence            6666666666666 456666666666666666666666666666666655555555443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.55  E-value=5e-14  Score=144.40  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             eEECCCCEECCCCEEec--------eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143          363 SVIGEGCTIGSNVLIEG--------SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS  433 (616)
Q Consensus       363 s~IG~~~~Ig~~~~I~~--------s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~  433 (616)
                      ++||++|.|+++|+|..        ++|++++.|+.++.| .+++||++++|+.++.|..+++||++|.||.+++|.+++
T Consensus       101 v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v  180 (283)
T 4eqy_A          101 LVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYV  180 (283)
T ss_dssp             EEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCe
Confidence            44444444444444432        445555555555544 345555555555555555555555555555555555555


Q ss_pred             EEcccc
Q 007143          434 KVSLLQ  439 (616)
Q Consensus       434 ~v~~~~  439 (616)
                      +|+...
T Consensus       181 ~Ig~~~  186 (283)
T 4eqy_A          181 RIGAHS  186 (283)
T ss_dssp             EECTTC
T ss_pred             EECCCc
Confidence            444433

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.54  E-value=8.3e-14  Score=134.27  Aligned_cols=111  Identities=21%  Similarity=0.299  Sum_probs=62.8

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-eEEC---
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIVC---  400 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siIg---  400 (616)
                      ..++++++.|++++.|+++++|+.++.||+++.|+ +++|+.+|.||++|.|. ++.|+++++|+++|.|.. +++.   
T Consensus         9 ~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~   88 (192)
T 3mqg_A            9 TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVY   88 (192)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCS
T ss_pred             CcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEeccc
Confidence            34444444444444444444444444444444442 44444444444444442 344444444444444432 1221   


Q ss_pred             ------------CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 ------------DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ------------~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                                  ..++||++++|+.+++|..+++||++++|+++++|..
T Consensus        89 ~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~  137 (192)
T 3mqg_A           89 NPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNK  137 (192)
T ss_dssp             SCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECc
Confidence                        2357778888888888888888888888888888874

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.54  E-value=1.2e-13  Score=140.20  Aligned_cols=117  Identities=16%  Similarity=0.218  Sum_probs=95.3

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE--------------eceEECCCC
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI--------------EGSYIWDNV  386 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I--------------~~s~I~~~v  386 (616)
                      .+..+++.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|++++.|              .++.|++++
T Consensus        11 a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~   90 (266)
T 3r0s_A           11 AVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNA   90 (266)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCC
Confidence            3455677788888888999998999999999999999996 8999999999999999              589999999


Q ss_pred             EECCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          387 IIEDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       387 ~Ig~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .|+++|+|..        +.||+++.|+.++.|..+|+||++|.|+.++.+..++.|+..
T Consensus        91 ~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~  150 (266)
T 3r0s_A           91 TIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDF  150 (266)
T ss_dssp             EECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             EECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCC
Confidence            9999999964        888888888888777777777776666665555544444443

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.54  E-value=1e-13  Score=140.75  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-------------eceEECCCCEECCCCEEe--------ceE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-------------SDSVIGEGCTIGSNVLIE--------GSY  381 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~s~IG~~~~Ig~~~~I~--------~s~  381 (616)
                      ...+++.+++++.|++.+.|.+++.||++|.|++++.|             .+++||++|.|+++|+|.        +++
T Consensus        33 ~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~  112 (265)
T 4e6u_A           33 IIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTK  112 (265)
T ss_dssp             EECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEE
T ss_pred             EECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceE
Confidence            33445555555555555555555666666666666666             245666666666666664        356


Q ss_pred             ECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       382 I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |++++.|+.++.| .+++||++++|+.++.|..+++||++|.||.+++|.++++|+...
T Consensus       113 IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~  171 (265)
T 4e6u_A          113 IGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYS  171 (265)
T ss_dssp             ECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTC
T ss_pred             EccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCC
Confidence            6666666666666 456666666666666666556666666666666655555555443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.54  E-value=9.1e-14  Score=142.46  Aligned_cols=118  Identities=23%  Similarity=0.215  Sum_probs=96.9

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-------------eceEECCCCE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-------------EGSYIWDNVI  387 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-------------~~s~I~~~v~  387 (616)
                      ....+++.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++|.|             .+++|++++.
T Consensus        29 a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~  108 (283)
T 4eqy_A           29 AIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNT  108 (283)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCE
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcc
Confidence            4455677888888888899998999999999999999996 7999999999999999             3789999999


Q ss_pred             ECCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          388 IEDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       388 Ig~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |+++|+|..        ++||+++.|+.++.|..+|+||++|.|+.++.+..+++|+...
T Consensus       109 Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~  168 (283)
T 4eqy_A          109 IREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWA  168 (283)
T ss_dssp             ECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTC
T ss_pred             cCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCe
Confidence            999999975        8888888888888877777777777666666655555555443

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.54  E-value=1.1e-13  Score=140.81  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-------------eceEECCCCEEC
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-------------EGSYIWDNVIIE  389 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-------------~~s~I~~~v~Ig  389 (616)
                      ..+.+.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++|+|             .+++|++++.|+
T Consensus        10 I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~   89 (270)
T 1j2z_A           10 ISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIR   89 (270)
T ss_dssp             ECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEEC
Confidence            34556677777777777777777777777777777775 7777777777777777             356666666666


Q ss_pred             CCcEEe--------ceEECCCcEECCCCEECCCCEECCCcE
Q 007143          390 DGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVV  422 (616)
Q Consensus       390 ~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~  422 (616)
                      ++|+|.        .+.||+++.|+.+++|..+|+||++|+
T Consensus        90 ~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~  130 (270)
T 1j2z_A           90 EFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCI  130 (270)
T ss_dssp             TTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCE
T ss_pred             CCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcE
Confidence            666664        245555555444444444344433333

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.53  E-value=1e-14  Score=145.05  Aligned_cols=203  Identities=13%  Similarity=0.105  Sum_probs=127.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .|.|||||+|. +||.+.+...||+|+|++|+|||+|+++.|..+|+ +|+|++..  +++++++         +  +.+
T Consensus         2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~---------~--~~~   66 (232)
T 2dpw_A            2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP---------A--LTL   66 (232)
T ss_dssp             CCEEEEECCCB-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC---------S--EEE
T ss_pred             ceeEEEECCCC-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc---------C--eEe
Confidence            47999999999 88777665689999999999999999999999998 88887543  3333222         2  333


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                         ....|++++++...  ..+.+.||+++||+  +....+..+++ | ..     ++.+++...+...    ...+++.
T Consensus        67 ---~~~~g~~~~i~~a~--~~~~~~~lv~~~D~P~~~~~~i~~l~~-~-~~-----~~~~~~~~~~~~~----~~~~~~~  130 (232)
T 2dpw_A           67 ---PDRGGLLENLEQAL--EHVEGRVLVATGDIPHLTEEAVRFVLD-K-AP-----EAALVYPIVPKEA----VEARFPR  130 (232)
T ss_dssp             ---CCCSSHHHHHHHHH--HTCCSEEEEEETTCTTCCHHHHHHHHH-H-CC-----SCSEEEEEEEHHH----HHHHCTT
T ss_pred             ---cCCCCHHHHHHHHH--HHcCCCEEEEeCCcccCCHHHHHHHHh-c-CC-----CCCEEEEEeeccc----hhhhCCC
Confidence               45678999888643  33444599999999  67778999998 6 22     2445554433110    0012221


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChh-h-------H
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ-H-------L  257 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q-~-------l  257 (616)
                          +     ..++..+.++|.                         ..+|+|++++.++..+.+...-. .       +
T Consensus       131 ----~-----~~~v~~~~ek~~-------------------------~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~  176 (232)
T 2dpw_A          131 ----T-----KRTYARLREGTF-------------------------TGGNLLLLDKSLFRKALPLARRVVALRKRPLAL  176 (232)
T ss_dssp             ----C-----CCCCEEETTEEE-------------------------EECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHH
T ss_pred             ----c-----ceeEEEEecCce-------------------------eeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHH
Confidence                0     124555655431                         34678888888776543211000 0       0


Q ss_pred             --------------HHHhhhhhhhcc--ccCceEEEEEcc-ccchhhccChhhHH
Q 007143          258 --------------RRHFVKGLLLDD--IMGYKIFTHEIH-SSYAARIDNYRSYD  295 (616)
Q Consensus       258 --------------r~dfv~~~l~~~--i~g~~I~~~~~~-~~y~~~V~s~~sY~  295 (616)
                                    .+-.+..+++..  ..|.++.++..+ ++.|.+|+++++|.
T Consensus       177 ~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          177 ARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             HHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred             HHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence                          001112222221  146788888875 35899999999873

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.53  E-value=8.3e-14  Score=139.90  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEe-----------------------
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE-----------------------  378 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~-----------------------  378 (616)
                      ...+++++.|++++.|.+++.||++|.|++++.|.     +++||++|.|+++|+|.                       
T Consensus        59 ~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~  138 (247)
T 1qre_A           59 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE  138 (247)
T ss_dssp             CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred             CcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCcc
Confidence            44577888888888888888899999999998885     23899999999999986                       


Q ss_pred             -ceEECCCCEECCCcEEec-eEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          379 -GSYIWDNVIIEDGCELRH-VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       379 -~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                       +++||++|.|+.+|.|.+ ++||++|+||.+++|.. ++||++|+||++++|
T Consensus       139 ~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV  190 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA  190 (247)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE
T ss_pred             CceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE
Confidence             278999999999999987 88999999999988876 778888888877777

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.53  E-value=1.9e-13  Score=138.17  Aligned_cols=51  Identities=22%  Similarity=0.133  Sum_probs=24.0

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI  377 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I  377 (616)
                      .+.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|++++.|
T Consensus        12 ~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   63 (259)
T 3hsq_A           12 KAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI   63 (259)
T ss_dssp             TCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence            33344444444444444444444444444444443 3444555554444444

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.53  E-value=4.6e-13  Score=131.54  Aligned_cols=208  Identities=12%  Similarity=0.118  Sum_probs=130.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ++.|||||+|.|+||+   ...||+|+|++|+|||+|+++.|..++ +++|+|++++.. +.+.+++..        ..+
T Consensus         2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~--------~~v   70 (223)
T 2xwl_A            2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGG--------EDS   70 (223)
T ss_dssp             CEEEEEECCCCCGGGT---SSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCB--------TTE
T ss_pred             ceEEEEECCccCcccC---CCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhcc--------CCe
Confidence            4789999999999998   357999999999999999999999998 999999998765 446665531        234


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          106 KTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      .++..  ..+.+++++...  ..+ ..+ ++++.||+  +....+..+++.|. +.     ..+++.+.+..     +. 
T Consensus        71 ~~~~~--~~~~~~~i~~al--~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~-----~~~~i~~~~~~-----d~-  134 (223)
T 2xwl_A           71 VIVSG--GVDRTESVALAL--EAAGDAEFVLVHDAARALTPPALIARVVAALK-EG-----HSAVVPGLAPA-----DT-  134 (223)
T ss_dssp             EEEEC--CSSHHHHHHHHH--TTCTTCSEEEECCTTCTTCCHHHHHHHHHHHH-HT-----CSEEEEEECCS-----SC-
T ss_pred             EEEcC--CCCHHHHHHHHH--HhcCCCCEEEEEcCCcccCCHHHHHHHHHHHh-hc-----CCeEEEEEecc-----cc-
Confidence            45543  234566666433  334 445 78889998  45568999999883 11     22344333321     11 


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh-hhcC--CChhhHH
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL-FTDN--FDYQHLR  258 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l-f~dn--fd~q~lr  258 (616)
                             +..+| .++++..+.+++.    .+                .   -...+++.+..+.. +..+  +.+...+
T Consensus       135 -------~~~~~-~~g~~~~~~e~~~----l~----------------~---~~~p~~f~~~~l~~~~~~~~~~~~~~~~  183 (223)
T 2xwl_A          135 -------IKAVD-ANGAVLGTPERAG----LR----------------A---VQTPQGFHADVLRRAYARATAGGVTDDA  183 (223)
T ss_dssp             -------EEEEC-TTSBEEECCCGGG----EE----------------E---ECSCEEEEHHHHHHHHTTCCSCCCCCHH
T ss_pred             -------eEEEc-CCCcEEeecChHH----he----------------e---eeCCcccCHHHHHHHHHHhhCCCCccHH
Confidence                   11234 3577777766532    00                0   01234555554432 2222  1111111


Q ss_pred             HHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          259 RHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       259 ~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                       .    ++..  .+.++..+..+ ++|.+|+++++|..+...+
T Consensus       184 -~----~~~~--~~~~v~~~~~~-~~~~dIdtpeDl~~a~~~l  218 (223)
T 2xwl_A          184 -S----LVEQ--LGTPVQIVDGD-PLAFKITTPLDLVLAEAVL  218 (223)
T ss_dssp             -H----HHHT--TTCCCEEEECC-GGGCCCCSHHHHHHHHHHH
T ss_pred             -H----HHHH--cCCCEEEEECC-cccccccCHHHHHHHHHHH
Confidence             1    1111  35678887775 7899999999998886543

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.52  E-value=1.7e-13  Score=138.62  Aligned_cols=119  Identities=16%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE--------------eceEECCCCEECCCCEEe-------c
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI--------------SDSVIGEGCTIGSNVLIE-------G  379 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I--------------~~s~IG~~~~Ig~~~~I~-------~  379 (616)
                      +....+++.+++++.|++++.|.+++.||++|.|++++.|              .+++||++|.|+++|+|.       .
T Consensus        24 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~  103 (259)
T 3hsq_A           24 YSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSP  103 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBC
T ss_pred             CCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCc
Confidence            4455667888888888888999888999999999999999              378999999999999998       7


Q ss_pred             eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          380 SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ++|++++.|+.+++|. ++.||++++|+.++.+..+++||++|.||.+++|.++++|+...
T Consensus       104 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~  164 (259)
T 3hsq_A          104 TVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYS  164 (259)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTC
T ss_pred             EEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCC
Confidence            8888888888888884 57777777777776666666666666666666655555555443

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.52  E-value=4.7e-13  Score=146.15  Aligned_cols=193  Identities=10%  Similarity=0.098  Sum_probs=133.3

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcC-CcHHHHHHHHHhcCCC
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCC-AHSKQVIDYLENSEWF   98 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~-~~~~~i~~~l~~~~~~   98 (616)
                      ..++.+||||||.||||+.   ..||+|+||+ |+|||+|+++.+...    |+. .++|+++ +..+++++|+++..+.
T Consensus        90 ~~k~avViLAGG~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~f  166 (488)
T 2i5k_A           90 LSKLAVLKLNGGLGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSAN  166 (488)
T ss_dssp             GGGEEEEEECCCBSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSS
T ss_pred             cCCceEEEEcCCCcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhcccc
Confidence            4567889999999999984   7899999999 999999999999887    533 3677777 6689999999874332


Q ss_pred             CCCCcEEEEEeCC------------------------CccCHHHHHHHHHhc---ccc----cCCEEEEeCceecc-hhH
Q 007143           99 SQPNFTVKTIESH------------------------NIISAGDALRLIYEQ---NVI----HGDFVLISGDTVSN-MLL  146 (616)
Q Consensus        99 ~~~~~~i~~i~~~------------------------~~~~~gdalr~~~~~---~~i----~~dfLlv~gD~i~~-~~l  146 (616)
                         +++|.++.+.                        .+.|+|++++.+.+.   ..+    .+.++|++||.+.. .++
T Consensus       167 ---g~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~  243 (488)
T 2i5k_A          167 ---RIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDL  243 (488)
T ss_dssp             ---SCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCH
T ss_pred             ---CceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccH
Confidence               4577777555                        567999999866431   222    23499999999776 477


Q ss_pred             HHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc-ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCc
Q 007143          147 TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS-RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPS  225 (616)
Q Consensus       147 ~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~-r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~  225 (616)
                      . ++..|..+     ++.+||.+.+..     .+. ++|    ++..+...-+++.|.+.|...       ...|.... 
T Consensus       244 ~-~L~~~~~~-----~a~~t~~v~~~~-----~p~~~yG----~Iv~~dG~~~iVE~~e~~~e~-------~~~~~~~~-  300 (488)
T 2i5k_A          244 K-ILNHMIET-----GAEYIMELTDKT-----RADVKGG----TLISYDGQVRLLEVAQVPKEH-------IDEFKNIR-  300 (488)
T ss_dssp             H-HHHHHHHS-----CCSEEEEEEECC-----GGGSSSC----EEEEETTEEEEECGGGSCTTS-------HHHHTCTT-
T ss_pred             H-HHHHHHhc-----CCcEEEEEEEec-----CCCCcee----EEEEECCcEEEEEeccCCHHH-------Hhhccccc-
Confidence            5 66888764     477777766543     222 466    454442224566666665421       11122211 


Q ss_pred             eEEEeccccceeEeeCHhHHhhhhc
Q 007143          226 ISLHNDKQDCYIDICSPEVLSLFTD  250 (616)
Q Consensus       226 ~~ir~dl~d~gIyIcsp~vl~lf~d  250 (616)
                         ....+++++|+++.+.+..+.+
T Consensus       301 ---~~~~~Ntgi~~f~~~~L~~~l~  322 (488)
T 2i5k_A          301 ---KFTNFNTNNLWINLKAVKRLIE  322 (488)
T ss_dssp             ---TCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ---ccCEEEEEEEEEeHHHHHHHHh
Confidence               2345689999999998876544

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.52  E-value=2.1e-13  Score=138.41  Aligned_cols=118  Identities=15%  Similarity=0.170  Sum_probs=96.3

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-------------eceEECCCCE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-------------EGSYIWDNVI  387 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-------------~~s~I~~~v~  387 (616)
                      ....+++.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|++++.|             .+++|++++.
T Consensus        14 a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~   93 (265)
T 4e6u_A           14 AIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNL   93 (265)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCE
T ss_pred             CEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeE
Confidence            4455677888899999999999999999999999999996 7999999999999999             4789999999


Q ss_pred             ECCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          388 IEDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       388 Ig~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |+++|+|.        .++||+++.|+.++.|..+|+||++|.|+.++.+..+++|+...
T Consensus        94 Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~  153 (265)
T 4e6u_A           94 IREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHV  153 (265)
T ss_dssp             ECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSC
T ss_pred             ECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCe
Confidence            99999997        48888888888887777777777766666665555555554433

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.52  E-value=1.5e-13  Score=135.97  Aligned_cols=209  Identities=11%  Similarity=0.026  Sum_probs=130.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +++.|||||+|.|+||+      ||+|+|++|+|||+|+++.+..++ +++|+|++++  +.+.+++...      ++.+
T Consensus         3 m~~~aiIlA~G~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~~------~~~~   68 (228)
T 1ezi_A            3 KQNIAVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKNF------GVEV   68 (228)
T ss_dssp             CEEEEEEECCSSCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHHT------TCEE
T ss_pred             CceEEEEecCCCCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHHc------CCEE
Confidence            34679999999999998      899999999999999999999998 7999999864  5677776541      2344


Q ss_pred             EEEeCC-----CccCHHHHHHHHHhccccc--CC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCC
Q 007143          106 KTIESH-----NIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPS  175 (616)
Q Consensus       106 ~~i~~~-----~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~  175 (616)
                        +..+     ...|.+++++....  .+.  .+ ||++.||+  +....+..+++.|++.     ++.+++.+.+....
T Consensus        69 --~~~~~~~~~~~~g~~~sv~~~l~--~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~~~  139 (228)
T 1ezi_A           69 --VLRPAELASDTASSISGVIHALE--TIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEK-----IKGSVVSACPMEHH  139 (228)
T ss_dssp             --EECCC------CHHHHHHHHHHH--HHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTT-----TCCCEEEEEECSSC
T ss_pred             --EeCchHHcCCCCChHHHHHHHHH--HhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc-----CCCEEEEEEecCCC
Confidence              3222     23456677765432  232  24 99999998  5567899999877643     23334444433210


Q ss_pred             CCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChh
Q 007143          176 PITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ  255 (616)
Q Consensus       176 ~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q  255 (616)
                          +  ++    ...++ ..+++..+.+...     ..+...   ..+..    .....|+|++.+..+....      
T Consensus       140 ----p--~~----~~~~~-~~g~~~~~~~~~~-----~~~~~~---~~~~~----~~~~~giy~~~~~~l~~~~------  190 (228)
T 1ezi_A          140 ----P--LK----TLLQI-NNGEYAPMRHLSD-----LEQPRQ---QLPQA----FRPNGAIYINDTASLIANN------  190 (228)
T ss_dssp             ----T--TS----CEEEC-C--CEEESSCHHH-----HTCCGG---GSCCE----EEEEEEEEEEEHHHHHHHT------
T ss_pred             ----c--ce----eeEEc-CCCcEeecccccc-----ccCCcc---cCchh----heeeeEEEEEeHHHHhhCC------
Confidence                1  11    12234 3567777755210     000000   00110    1223689998876553210      


Q ss_pred             hHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhh
Q 007143          256 HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD  300 (616)
Q Consensus       256 ~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d  300 (616)
                                   ...+.++..+..++.+|.+|+++++|..+...
T Consensus       191 -------------~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~  222 (228)
T 1ezi_A          191 -------------CFFIAPTKLYIMSHQDSIDIDTELDLQQAENI  222 (228)
T ss_dssp             -------------SSCCSSCEEEECCTGGGCCCCSHHHHHHHHHH
T ss_pred             -------------cccCCceEEEEeCcccccCCCCHHHHHHHHHH
Confidence                         11367778888765699999999999887553

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.51  E-value=1.8e-13  Score=135.58  Aligned_cols=214  Identities=13%  Similarity=0.138  Sum_probs=121.8

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      |.|||||+|.|+||++  ..+||+|+|++|+|||+|+++.|..+ ++++|+|++++.. +.+++++..  |...-...+.
T Consensus         3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~--~~~~~~~~~~   78 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK--YLPLYKERII   78 (236)
T ss_dssp             EEEEEEEC-------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH--HCGGGGGGEE
T ss_pred             eEEEEeCCccccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh--ccccccCceE
Confidence            7899999999999998  67899999999999999999999998 5999999999876 778777754  2100001223


Q ss_pred             EEeCCCccCHHHHHHHHHhcccc-------cCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143          107 TIESHNIISAGDALRLIYEQNVI-------HGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP  176 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i-------~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~  176 (616)
                      +..  ...|..++++....  .+       ..+ +|++.||+  +...++..+++.|++..     +. ++++ +..   
T Consensus        79 ~~~--~~~~~~~~i~~~l~--~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~-----~~-~~~~-~~~---  144 (236)
T 2vsh_A           79 ITK--GGADRNTSIKNIIE--AIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHD-----AV-DTVV-EAV---  144 (236)
T ss_dssp             EEE--CCSSHHHHHHHHHH--HHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSS-----EE-EEEE-ECC---
T ss_pred             EEC--CCCchHHHHHHHHH--HHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcC-----cE-EEEE-ecc---
Confidence            332  12355555554321  12       225 77888999  56679999999998642     32 2222 221   


Q ss_pred             CCcccccCCCceEEEEeCCCC-eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCCh
Q 007143          177 ITHQSRLGTDELFMAIDPNTK-QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDY  254 (616)
Q Consensus       177 ~~~~~r~~~~~~vv~id~~~~-rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~  254 (616)
                        ..         +..+ ..+ ++..+.+++.                  +  ..   -...++++++.+. ++....+.
T Consensus       145 --~~---------~~~~-~~g~~~~~~~~~~~------------------~--~~---~~~p~~f~~~~l~~~~~~~~~~  189 (236)
T 2vsh_A          145 --DT---------IVES-TNGQFITDIPNRAH------------------L--YQ---GQTPQTFRCKDFMDLYGSLSDE  189 (236)
T ss_dssp             --SC---------EEEC-SSSSBCCBCCCGGG------------------E--EE---EEEEEEEEHHHHHHHHHTCCHH
T ss_pred             --cc---------EEEe-CCCCeeeeecChHH------------------h--ee---ecCCcEecHHHHHHHHHHHHhc
Confidence              11         1112 245 5555544321                  0  00   0125667777554 44433211


Q ss_pred             hhHHHHhhh--hhhhccccCceEEEEEccccchhhccChhhHHHHhhh
Q 007143          255 QHLRRHFVK--GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKD  300 (616)
Q Consensus       255 q~lr~dfv~--~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d  300 (616)
                       . ..++..  .++.  ..+.+++.+..+ ++|.+|+++++|..+...
T Consensus       190 -g-~~~~~~~~~~l~--~~~~~v~~~~~~-~~~~dIdtpeDl~~a~~~  232 (236)
T 2vsh_A          190 -E-KEILTDACKIFV--IKGKDVALAKGE-YSNLKITTVTDLKIAKSM  232 (236)
T ss_dssp             -H-HHHCCSHHHHHH--HTTCCEEEEECC-TTCCCCCSHHHHHHHHHH
T ss_pred             -C-CCcCCCHHHHHH--HcCCCEEEEECC-ccccCcCCHHHHHHHHHH
Confidence             0 001111  1222  246688888864 799999999999887654

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.51  E-value=2.3e-13  Score=133.48  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             eeeecceEEcCCcEECCCCEECC----CcEECCCCEECCCCEEec---------------eEECCCCEECCCCEEec-eE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGS----FTVIGYGTKIGSNSKISD---------------SVIGEGCTIGSNVLIEG-SY  381 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~----~~~Ig~~~~Ig~~~~I~~---------------s~IG~~~~Ig~~~~I~~-s~  381 (616)
                      ....+++++++++.|++++.|..    ++.||++|.|++++.|..               ++||++|.|+.+|.|.+ ++
T Consensus        52 a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~  131 (213)
T 3kwd_A           52 SNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAY  131 (213)
T ss_dssp             SEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEE
T ss_pred             CEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCE
Confidence            44567889999999999999854    589999999999999963               89999999999999986 99


Q ss_pred             ECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          382 IWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       382 I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      |+++|.||.++.|.+++||++|+||++++|. +      ++|+++..|++++++.
T Consensus       132 Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~-~------~~i~~~~~v~~~~vv~  179 (213)
T 3kwd_A          132 IGDGCFIGFRSTVFNARVGAGCVVMMHVLIQ-D------VEIPPGKYVPSGMVIT  179 (213)
T ss_dssp             ECTTCEECTTCEEEEEEECTTCEECSSCEEE-S------CEECTTBEECTTCEEC
T ss_pred             ECCCCEECCCCEEeCcEECCCCEEcCCCEEC-C------cEeCCCCEECCCcEEc
Confidence            9999999999999888888888888777773 4      5555555555555555

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.50  E-value=3.3e-13  Score=136.59  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-------------ceEECCCCEECC
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIED  390 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~  390 (616)
                      .+++.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++|+|.             +++|++++.|++
T Consensus        15 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~   94 (262)
T 2qia_A           15 EEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRE   94 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECT
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCC
Confidence            3455566666666666666666666666666666664 66677777777777774             466666666666


Q ss_pred             CcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          391 GCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       391 ~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      +|.|..        ++||++++|+.++.|..+|+||+++.|++++.
T Consensus        95 ~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~  140 (262)
T 2qia_A           95 SVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNAT  140 (262)
T ss_dssp             TCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             CCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCccc
Confidence            666642        56666666555555544444444444444333

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.50  E-value=3.7e-13  Score=136.91  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEec---------------eEECCCCEECCCCEE-eceEECCCC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD---------------SVIGEGCTIGSNVLI-EGSYIWDNV  386 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~---------------s~IG~~~~Ig~~~~I-~~s~I~~~v  386 (616)
                      ...+++.+++++.|+++|.|++++.||++|.|++++.|+.               ++||++|.|+++++| .+++|++++
T Consensus        16 ~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~   95 (273)
T 3fs8_A           16 IIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNF   95 (273)
T ss_dssp             EECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTTC
T ss_pred             EECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCCC
Confidence            3445777888888888888888888888888888888863               889999999999999 488999999


Q ss_pred             EECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          387 IIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       387 ~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      .|+.++.|. ++.|++++.|+.++.|..+++||++|.|++++.|+.++.+...
T Consensus        96 ~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~  148 (273)
T 3fs8_A           96 QTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDF  148 (273)
T ss_dssp             EECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTT
T ss_pred             EECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCc
Confidence            999999995 8888888888888888777777777777777777777666643

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.49  E-value=4.7e-13  Score=135.51  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=95.3

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec--------
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG--------  379 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~--------  379 (616)
                      +....+++++++++.|++++.|++++.||++|.|+++++|.             +++||++|.|+++|+|..        
T Consensus        29 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~  108 (262)
T 2qia_A           29 FCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGL  108 (262)
T ss_dssp             TCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSE
T ss_pred             CCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCc
Confidence            34455678888888888888888889999999999999995             688999999999999963        


Q ss_pred             eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          380 SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ++|++++.|+.++.| .++.||++++|+.++.+..+++||++|.||.+++|.++++|+...
T Consensus       109 ~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~  169 (262)
T 2qia_A          109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHV  169 (262)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCC
Confidence            899999999999988 578888888777777777667777777666666666666655444

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.49  E-value=3.9e-13  Score=136.78  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-------------eceEECCCCEECCCCEEe--------c
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-------------SDSVIGEGCTIGSNVLIE--------G  379 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-------------~~s~IG~~~~Ig~~~~I~--------~  379 (616)
                      +....+++.+++++.|++++.|.+++.||++|.|++++.|             .+++||++|.|+++|+|.        .
T Consensus        25 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~  104 (270)
T 1j2z_A           25 FCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKK  104 (270)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSE
T ss_pred             CCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCcc
Confidence            3445567778888888888888888999999999999998             468899999999999996        4


Q ss_pred             eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          380 SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      +.|++++.|+.+++| .+++||++++|+.++.|..+++||++|.||.+++|.++++|+...
T Consensus       105 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a  165 (270)
T 1j2z_A          105 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGC  165 (270)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTC
T ss_pred             EEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCce
Confidence            788888888888888 467777777777777666666666666666666655555555443

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.48  E-value=2.3e-13  Score=138.79  Aligned_cols=108  Identities=16%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR---------HVI  398 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~---------~si  398 (616)
                      ...++.+++++.|++++.||++|.|+++ .|. ++.||++|.|+.+++|.+ +.||++|.|+.++.|.         +++
T Consensus       101 ~~~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~  179 (276)
T 3gos_A          101 QREGFRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI  179 (276)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCE
T ss_pred             ccCCcEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeE
Confidence            3445666777777777777777777776 554 778888888888888865 8888888888888884         488


Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      ||++|+||.+|+|.+|++||++|+||+|++|.++++|...
T Consensus       180 IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~  219 (276)
T 3gos_A          180 IEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDR  219 (276)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEET
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccc
Confidence            8999999999988888888888888888888888877653

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.48  E-value=1.2e-13  Score=142.49  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEec-eEECCCCEECCCcEEec---------eE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRH---------VI  398 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~---------si  398 (616)
                      +..++.|++++.|++++.||++|.|+++ .| .++.||++|.|+.+++|.+ +.|+++|.|+.++.|.+         ++
T Consensus       126 ~~~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~  204 (304)
T 3eg4_A          126 EKAGFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTI  204 (304)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCE
T ss_pred             ccCCcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeE
Confidence            4456666777777777777777777765 44 3667777777777777753 77888888888887766         88


Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ||++|+||.+|+|.+|++||++|+||++++|.++++|....
T Consensus       205 IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~  245 (304)
T 3eg4_A          205 IEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRA  245 (304)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT
T ss_pred             EcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccc
Confidence            88888888888888888888888888888888888776543

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.47  E-value=1.1e-12  Score=137.96  Aligned_cols=69  Identities=23%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEE-eceEECCCCEECCCcEE
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I  394 (616)
                      +++.+++++.|+++++|++++.||++|.|++++.| .++.||++|.|+++++| .++.|+++|.|+.++.|
T Consensus       108 ~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  178 (341)
T 3eh0_A          108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV  178 (341)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred             CCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence            34444444444444444444555555555555555 24555555555555555 34555555555555554

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.47  E-value=7.3e-13  Score=134.75  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=77.8

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------------eEECCCCEECCCc
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------------SYIWDNVIIEDGC  392 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------------s~I~~~v~Ig~~~  392 (616)
                      .+++++.|++++.|++++.||+++.|+++|+|+ +++||++|.|+++|+|.+               ++|++++.|++++
T Consensus         4 ~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~   83 (273)
T 3fs8_A            4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTEN   83 (273)
T ss_dssp             EECTTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTC
T ss_pred             ccCCCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCC
Confidence            366777888888888888888888888888884 788899999999988864               7899999999888


Q ss_pred             EE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          393 EL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       393 ~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      .| .+++||+++.|+.++.|..+++||+++.|+.++.|.
T Consensus        84 ~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~  122 (273)
T 3fs8_A           84 VIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQ  122 (273)
T ss_dssp             EEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEEC
T ss_pred             EEeCCCEECCCCEECCceEECCCCEECCCCEECccceeC
Confidence            88 467777777777777766666666666555544433

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.47  E-value=1.8e-13  Score=137.93  Aligned_cols=104  Identities=20%  Similarity=0.241  Sum_probs=80.7

Q ss_pred             cceEEcCCcEECCCCEE----CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEe----ceEECCCCEECCCcEE
Q 007143          326 RGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIE----GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~----~s~I~~~v~Ig~~~~I  394 (616)
                      +.+.+++++.+...+.+    ...+.||++|.|++++.|.   +++||++|.|+++|.|.    +++||++|.||.+|.|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I  141 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL  141 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence            45667777666665555    4566788888888888883   68899999999999998    8999999999999999


Q ss_pred             ece--------------------EECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          395 RHV--------------------IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       395 ~~s--------------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      .++                    +||++|+||++|+|.+|++||++|+||++++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV  196 (252)
T 3jqy_B          142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV  196 (252)
T ss_dssp             ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred             ecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence            764                    67777777777777777777777777766665

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=1.3e-13  Score=132.99  Aligned_cols=117  Identities=15%  Similarity=0.239  Sum_probs=84.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |+|||||+|.|+||+|    .||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+++++... +..  ...+.++
T Consensus         1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~-~~~--~~~~~~~   73 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSA-YKD--YKNIVVI   73 (196)
T ss_dssp             CEEEEEC----CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHH-TTT--TTEEEE-
T ss_pred             CEEEEECCCCCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhh-ccC--CCCEEEE
Confidence            6899999999999997    79999999999999999999999999999999998888899988762 111  1134444


Q ss_pred             eCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      . ....|++++++..  ...+.+.|+++.||+  +....+..+++.|++
T Consensus        74 ~-~~~~g~~~si~~a--l~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           74 D-TSGKGYIEDLNEC--IGYFSEPFLVVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             --------CCCCCTT--TTTCSSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred             E-CCCCCcHHHHHHH--HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence            3 2345555566542  223345599999999  677899999999986

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.46  E-value=6e-14  Score=143.24  Aligned_cols=105  Identities=19%  Similarity=0.261  Sum_probs=89.3

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEec---------eEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH---------VIV  399 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~---------siI  399 (616)
                      ++.++.|++.++|.+++.||+++.|++++.|. ++.||++|+|..++.+. +.||++|.|+.+|.|.+         ++|
T Consensus       181 I~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~V~I  259 (347)
T 3r5d_A          181 VPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIVISV  259 (347)
T ss_dssp             CCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC------CCCCEE
T ss_pred             ccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCccceEE
Confidence            45677777777777778888888888877775 77788888887777664 88999999999999865         799


Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      |++|+||.+++|  |+.||++|+||+|++|.++++|+.
T Consensus       260 Gdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I~~  295 (347)
T 3r5d_A          260 GEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKVAL  295 (347)
T ss_dssp             CTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEEEE
T ss_pred             CCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEe
Confidence            999999999999  899999999999999999999976

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.46  E-value=8e-13  Score=127.74  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             ECCCCEECCCcEEC--CCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-eEECCCcEECCCCE
Q 007143          336 QSRSAQVGSFTVIG--YGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIVCDGVIMKAGAV  410 (616)
Q Consensus       336 i~~~~~I~~~~~Ig--~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig~~~~  410 (616)
                      +++++.|++++.||  ++|.|+++++|. +++||++|.|+.+|.|. ++.|++++.|+.++.|.+ ++||++|+||.+++
T Consensus        78 i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~  157 (194)
T 3bfp_A           78 IHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSC  157 (194)
T ss_dssp             ECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             cCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCE
Confidence            33444444444555  555555555553 56778888888777775 677788888888777754 66666666666666


Q ss_pred             ECCCCEECCCcEECCCCEE
Q 007143          411 LKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       411 I~~g~vIg~~v~Ig~~~~v  429 (616)
                      |.++++||++++||++++|
T Consensus       158 i~~~~~Ig~~~~Igagsvv  176 (194)
T 3bfp_A          158 VLPNLSLADDSILGGGATL  176 (194)
T ss_dssp             ECTTCEECTTCEECTTCEE
T ss_pred             ECCCCEECCCCEECCCCEE
Confidence            6666666666666666654

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.46  E-value=7.5e-13  Score=130.43  Aligned_cols=93  Identities=24%  Similarity=0.328  Sum_probs=59.8

Q ss_pred             CCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-eEECCCcEECCCCEECC
Q 007143          337 SRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIVCDGVIMKAGAVLKP  413 (616)
Q Consensus       337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig~~~~I~~  413 (616)
                      ++.+.+.+.+.||++|.|+++++|. ++.||++|.|+.+|+|. +++|+++|.|+.++.|.+ ++||++|+||.+++|.+
T Consensus       103 ~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~  182 (220)
T 4ea9_A          103 HPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIP  182 (220)
T ss_dssp             CTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             CCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcC
Confidence            3334444444445555555555553 45677777777777775 577778888887777754 66677777777777776


Q ss_pred             CCEECCCcEECCCCEE
Q 007143          414 GVVLSFKVVIGERFVV  429 (616)
Q Consensus       414 g~vIg~~v~Ig~~~~v  429 (616)
                      +++||++++||++++|
T Consensus       183 ~~~Ig~~~~igagsvv  198 (220)
T 4ea9_A          183 GVTIGADTIVGAGGVV  198 (220)
T ss_dssp             TCEECTTCEECTTCEE
T ss_pred             CcEECCCCEECCCCEE
Confidence            6666666666666654

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.45  E-value=8.9e-13  Score=139.40  Aligned_cols=66  Identities=26%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEE
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I  394 (616)
                      .+++++.|+++++|++++.||++|.|++++.|+ +++||++|.|+++|+| .++.|+++|.|+.+++|
T Consensus       116 ~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  183 (357)
T 4e79_A          116 VISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI  183 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence            333333444444444444444444444444443 4444444444444444 24444444444444444

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.45  E-value=1.2e-12  Score=138.96  Aligned_cols=98  Identities=19%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceEECCCC
Q 007143          328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWDNV  386 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~I~~~v  386 (616)
                      +++++++.|+++|.|++++.||++|.|+++++|. +++||++|.|+++++|.                    +++|+++|
T Consensus       150 v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v  229 (372)
T 3pmo_A          150 ARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV  229 (372)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSC
T ss_pred             CEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCC
Confidence            3333333333444444444444444444444443 45566666666666663                    46677777


Q ss_pred             EECCCcEE-----eceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          387 IIEDGCEL-----RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       387 ~Ig~~~~I-----~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      .||.+++|     .+++||+++.|+.++.|..+++||++|.|+.
T Consensus       230 ~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~  273 (372)
T 3pmo_A          230 EIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAA  273 (372)
T ss_dssp             EECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECC
Confidence            77777776     3455555555555544444444444433333

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.45  E-value=2e-13  Score=141.29  Aligned_cols=108  Identities=17%  Similarity=0.161  Sum_probs=81.0

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------e
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------V  397 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------s  397 (616)
                      +++.++.+.+++.|++++.||++|.|+++ .| .++.||++|.|+.+++|. ++.||++|.|+.++.|.+         +
T Consensus       141 ~~~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v  219 (316)
T 3tk8_A          141 FAAGGFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPV  219 (316)
T ss_dssp             HHHHCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCC
T ss_pred             eecCCcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCc
Confidence            34556677777777777777777777766 34 366777777777777774 577777777777777765         7


Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +||++|+||.+|+|.+|++||++|+||+|++|.++++|..
T Consensus       220 ~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d  259 (316)
T 3tk8_A          220 IIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYD  259 (316)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEE
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecc
Confidence            8888888888888888888888888888888888777764

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.45  E-value=1.4e-12  Score=138.64  Aligned_cols=113  Identities=21%  Similarity=0.252  Sum_probs=74.3

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe--------
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR--------  395 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~--------  395 (616)
                      +.+.+++++.|++++.|++++.||++|.|+++++|+ ++.||++|.|+++++|. ++.|+++|.|+.+++|.        
T Consensus       130 ~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~  209 (372)
T 3pmo_A          130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFAN  209 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEEecCcccccc
Confidence            344555555555555665566666666666666664 66666666666666664 57788888888888774        


Q ss_pred             ------------ceEECCCcEECCCCEEC----CCCEECCCcEECCCCEECCCCEEccc
Q 007143          396 ------------HVIVCDGVIMKAGAVLK----PGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       396 ------------~siIg~~v~Ig~~~~I~----~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                                  +++||++|.||++++|.    .+++||++++|+.++.|..+++|+..
T Consensus       210 ~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~  268 (372)
T 3pmo_A          210 EKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDH  268 (372)
T ss_dssp             ETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTT
T ss_pred             cCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCC
Confidence                        68889999998888875    34566666666665555555555443

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.45  E-value=2.3e-13  Score=140.38  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCcEE
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL  394 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I  394 (616)
                      ++++++++++.|.++ .|+.++.||++|.|+.+++|+ ++.||++|.|+.++.|.+         ++|+++|.||.+|.|
T Consensus       139 ~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I  217 (304)
T 3eg4_A          139 RHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEV  217 (304)
T ss_dssp             BTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEE
T ss_pred             CCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEE
Confidence            344555555555554 555566667777776666665 477777777777777765         788888888888866


Q ss_pred             -eceEECCCcEECCCCEECCCCEECCCc-------EECCCCEECCCCEEcc
Q 007143          395 -RHVIVCDGVIMKAGAVLKPGVVLSFKV-------VIGERFVVPAHSKVSL  437 (616)
Q Consensus       395 -~~siIg~~v~Ig~~~~I~~g~vIg~~v-------~Ig~~~~v~~~~~v~~  437 (616)
                       .+++||++|+||++++|.+++.|++++       .|+++++|.+|+++..
T Consensus       218 ~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~k  268 (304)
T 3eg4_A          218 VEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGK  268 (304)
T ss_dssp             CTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECC
T ss_pred             cCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecC
Confidence             467777777777777777777777665       3666666666666654

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.45  E-value=1.2e-12  Score=129.81  Aligned_cols=206  Identities=15%  Similarity=0.137  Sum_probs=125.5

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ++.|||||+|.|+||.      +|+|+|++|+|||+|+++.+..+| +++|+|++.  .+.+.+++...      ++.+ 
T Consensus         3 ~~~aiIlA~G~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~~------g~~~-   67 (229)
T 1qwj_A            3 HLAALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQF------GAQV-   67 (229)
T ss_dssp             CEEEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT------TCEE-
T ss_pred             cEEEEEEcCCCCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHHc------CCEE-
Confidence            5789999999999995      599999999999999999999998 699998884  46788777542      3444 


Q ss_pred             EEeCC-----CccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143          107 TIESH-----NIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI  177 (616)
Q Consensus       107 ~i~~~-----~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~  177 (616)
                       +..+     ...+..++++...  ..+ ..+ |+++.||+  +...++..+++.|++..   ..+.+|+. ....|   
T Consensus        68 -~~~~~~~~~~~~~~~~~v~~al--~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~---~~~~~~~~-~~~~p---  137 (229)
T 1qwj_A           68 -HRRSSETSKDSSTSLDAIVEFL--NYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEG---YDSVFSVV-RRHQF---  137 (229)
T ss_dssp             -EECCGGGSSTTCCHHHHHHHHH--TTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSC---CSEEEEEE-EECCC---
T ss_pred             -EeChhhhcCCCCcHHHHHHHHH--HhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCC---CCEEEEEe-eccCh---
Confidence             3322     2233346666433  233 334 99999998  55678999999987642   12344443 22112   


Q ss_pred             CcccccCCCceEEEEeCCCCeEEEeee--cCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChh
Q 007143          178 THQSRLGTDELFMAIDPNTKQLLYYED--KADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ  255 (616)
Q Consensus       178 ~~~~r~~~~~~vv~id~~~~rvl~~~e--~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q  255 (616)
                         ..++    +  .|   + +..+.+  .+....+.   ..   ...+.    ..+.+.|||+++++++  +       
T Consensus       138 ---~~~~----v--~~---~-~~~~~~~~~~~~~~~~---~~---~~~~~----~~~~n~giY~~~~~~l--~-------  185 (229)
T 1qwj_A          138 ---RWSE----I--QK---G-VREVTEPLNLNPAKRP---RR---QDWDG----ELYENGSFYFAKRHLI--E-------  185 (229)
T ss_dssp             ---EECC----C--CS---S-TTCCCCBSSSBTTBCC---CT---TTSCC----EEEEEEEEEEEEHHHH--H-------
T ss_pred             ---hHhh----c--cc---c-cccccccccccccccc---CC---CCCCc----eEEEeeEEEEEEHHHh--c-------
Confidence               1211    1  11   1 101111  11000000   00   00001    1245789999999876  0       


Q ss_pred             hHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143          256 HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       256 ~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                             +    ....|..+..+..++.+|.+|+++++|..+...+
T Consensus       186 -------~----~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~  220 (229)
T 1qwj_A          186 -------M----GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRV  220 (229)
T ss_dssp             -------T----TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHH
T ss_pred             -------c----ccccCCeEEEEECCcccccCCCCHHHHHHHHHHH
Confidence                   0    1113455543266557999999999999886654

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.45  E-value=4.6e-13  Score=131.54  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=82.2

Q ss_pred             cceEEcCCcEECCC-CEECCC---cEECCCCEECCCCEEec----eEECCCCEECCCCEE----eceEECCCCEECCCcE
Q 007143          326 RGMYRALEIEQSRS-AQVGSF---TVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLI----EGSYIWDNVIIEDGCE  393 (616)
Q Consensus       326 ~~i~~~~~v~i~~~-~~I~~~---~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I----~~s~I~~~v~Ig~~~~  393 (616)
                      +.+++++++.|.+. +.|.++   +.||++|.|++++.|..    ++||++|.|++++.+    .+++|+++|.|+.+|+
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~  114 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYE  114 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEE
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEE
Confidence            46888999888877 566653   99999999999999963    899999999996665    5789999999999999


Q ss_pred             Eece--------------------EECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          394 LRHV--------------------IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       394 I~~s--------------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      |.++                    +||++|+||.+++|.+|++||++|+|+++++|.
T Consensus       115 I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~  171 (215)
T 2wlg_A          115 IRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLY  171 (215)
T ss_dssp             EESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred             EECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc
Confidence            9753                    666666666666666666666666666666543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.45  E-value=1.4e-12  Score=135.06  Aligned_cols=51  Identities=18%  Similarity=0.358  Sum_probs=22.5

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI  377 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I  377 (616)
                      ++.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++++|
T Consensus        19 ~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I   70 (305)
T 3t57_A           19 NAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVV   70 (305)
T ss_dssp             TSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEe
Confidence            33344444444444444444444444444444442 4444444444444444

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.45  E-value=1.1e-12  Score=131.62  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=83.2

Q ss_pred             ecceEEcCCcEECCCCEECCCc----EECCCCEECCCCEEe------------------------ceEECCCCEECCCCE
Q 007143          325 RRGMYRALEIEQSRSAQVGSFT----VIGYGTKIGSNSKIS------------------------DSVIGEGCTIGSNVL  376 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~----~Ig~~~~Ig~~~~I~------------------------~s~IG~~~~Ig~~~~  376 (616)
                      .+++.+++++.|+++|.|.+.+    .||++|.|+++++|.                        +++||++|.||++|.
T Consensus        75 ~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~  154 (247)
T 1qre_A           75 IGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQ  154 (247)
T ss_dssp             EESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCE
T ss_pred             eCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCE
Confidence            4678888888888888887644    899999999999995                        389999999999999


Q ss_pred             Eec-eEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          377 IEG-SYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       377 I~~-s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      |.+ ++|+++|.||.+|.|.++.||++|+||++++| +      ++.|+++++|++++++.
T Consensus       155 I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV-~------~~~I~~~~~v~~g~vv~  208 (247)
T 1qre_A          155 VHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA-I------GVTIPDGRYIPAGMVVT  208 (247)
T ss_dssp             EEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE-E------SCEECTTBEECTTCEEC
T ss_pred             EcCCcEECCCCEECCCCEEeceEECCCCEECCCCEE-C------CeEeCCCCEECCCCEEe
Confidence            987 99999999999999966666666666666655 4      45555555556666664

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.44  E-value=1.4e-12  Score=137.95  Aligned_cols=101  Identities=19%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe--------------------ceEECC
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE--------------------GSYIWD  384 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~--------------------~s~I~~  384 (616)
                      .++.++.++.|+++|.|+.++.||++|.|+++++| .+++||++|.|+++++|.                    +++|++
T Consensus       131 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd  210 (357)
T 4e79_A          131 ENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGN  210 (357)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECT
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcC
Confidence            34445555555555555556666666666666666 477788888888888874                    578888


Q ss_pred             CCEECCCcEE-----eceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143          385 NVIIEDGCEL-----RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER  426 (616)
Q Consensus       385 ~v~Ig~~~~I-----~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~  426 (616)
                      +|.||.+|+|     .+++||+++.|+.++.|+.+|.||++|.|+.+
T Consensus       211 ~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~  257 (357)
T 4e79_A          211 DVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAK  257 (357)
T ss_dssp             TCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCC
Confidence            8888888888     34566665555555555554554444433333

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.44  E-value=1.3e-12  Score=137.39  Aligned_cols=104  Identities=22%  Similarity=0.333  Sum_probs=68.0

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe--------------------ceEEC
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE--------------------GSYIW  383 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~--------------------~s~I~  383 (616)
                      ..++.+++++.|++++.|+.++.||++|.|+++++| .+++||++|.|+++++|.                    +++|+
T Consensus       125 ~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IG  204 (341)
T 3eh0_A          125 ESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIG  204 (341)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEEC
T ss_pred             CCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEEC
Confidence            334455555555555555566666666666666666 478888888888888883                    47899


Q ss_pred             CCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          384 DNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       384 ~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      ++|.||.+|.|.     +++||+++.|+.++.|+.++.||++|.|+.++.
T Consensus       205 d~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~  254 (341)
T 3eh0_A          205 DRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVI  254 (341)
T ss_dssp             SSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             CCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCE
Confidence            999999998883     566666666665555555555555444444433

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.44  E-value=2.8e-12  Score=128.49  Aligned_cols=121  Identities=15%  Similarity=0.139  Sum_probs=80.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHH-HHHHHHHhcCCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSK-QVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~-~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.|||||+|.|+||++  ..+||+|+|++|+|||+|+|+.+..++ +++|+|++++... .+++.+....+.    ..+
T Consensus         3 ~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~----~~~   76 (246)
T 3f1c_A            3 LIYAQILAGGKGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD----DRI   76 (246)
T ss_dssp             CEEEEEECC-----C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC----TTE
T ss_pred             ccEEEEECCccccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC----CCE
Confidence            46899999999999987  568999999999999999999999997 9999999986543 355555442221    124


Q ss_pred             EEEeCCCccCHHHHHHH----HHhccc-ccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          106 KTIESHNIISAGDALRL----IYEQNV-IHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~----~~~~~~-i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .++...  .+..++++.    +..... -..+ +|++.||.  +....+..+++.|++.
T Consensus        77 ~~~~~~--~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~  133 (246)
T 3f1c_A           77 VVIEGG--EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALET  133 (246)
T ss_dssp             EEEECC--SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHT
T ss_pred             EEECCC--CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence            455432  233444443    221100 1134 89999998  7778999999999874

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.43  E-value=2.4e-13  Score=137.81  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEec---------eEE
Q 007143          330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH---------VIV  399 (616)
Q Consensus       330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~---------siI  399 (616)
                      ++.++.|++.++|.+++.||+++.|+++++|. ++.|+.+|+|..++.+ ++.||++|.|+.++.|..         ++|
T Consensus       158 I~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~~~~~~V~I  236 (332)
T 3fsy_A          158 VPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSGGGTHVISI  236 (332)
T ss_dssp             CCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC---CCBCEE
T ss_pred             cCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCCCCccceEE
Confidence            56778888888888888888888888888875 7778888888665444 488999999999999965         899


Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      |++|+||.+++|  ++.||++|+||+|++|.++++|.
T Consensus       237 GDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~  271 (332)
T 3fsy_A          237 GKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVT  271 (332)
T ss_dssp             CTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEE
T ss_pred             CCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEE
Confidence            999999999999  89999999999999999999995

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.43  E-value=4.4e-12  Score=125.13  Aligned_cols=117  Identities=16%  Similarity=0.240  Sum_probs=84.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      .+.|||||+|.|+||+.   ..||+|+|++|+|||+|+++.|..+ |+++|+|++++..+.+.+++.. .|    +.++.
T Consensus         4 ~~~aiIlAaG~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-~~----~~~v~   75 (228)
T 2yc3_A            4 SVSVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE-SI----DVDLS   75 (228)
T ss_dssp             CEEEEEECCCCC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT-TS----SSEEE
T ss_pred             ceEEEEECCccccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH-hC----CCcEE
Confidence            47899999999999972   5799999999999999999999998 8999999999877777665543 22    24566


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccC--C-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHG--D-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~--d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      ++..  ..|..++++...  ..+..  + ++++.||.  +....+..+++.|++.
T Consensus        76 ~~~~--~~~~~~sv~~al--~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~  126 (228)
T 2yc3_A           76 FAIP--GKERQDSVYSGL--QEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV  126 (228)
T ss_dssp             EECC--CSSHHHHHHHHH--TTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred             EECC--CCCHHHHHHHHH--HhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhc
Confidence            6642  246667777543  33442  4 77888987  5667899999998764

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.42  E-value=4.1e-12  Score=125.50  Aligned_cols=118  Identities=10%  Similarity=0.091  Sum_probs=77.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      ++|.|||||+|.|+||++   ..||+|+|++|+|||+|+++.|..++ +++|+|++++..+.+++ +.....     ..+
T Consensus         5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~-----~~i   75 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFP-----QVR   75 (231)
T ss_dssp             CCEEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCT-----TSE
T ss_pred             CceEEEEEcccccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCC-----Cce
Confidence            458999999999999997   67999999999999999999999985 99999999876556666 433111     124


Q ss_pred             EEEeCCCccCHHHHHHHHHhc-cc----ccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQ-NV----IHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~-~~----i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      .++  ....+++++++..... ..    ...+ ++++.||.  +....+..+++.|++
T Consensus        76 ~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~  131 (231)
T 1vgw_A           76 VWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGN  131 (231)
T ss_dssp             EEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTT
T ss_pred             EEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhh
Confidence            444  2345777777654321 00    0234 89999997  455679999988864

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.42  E-value=1.9e-12  Score=141.12  Aligned_cols=71  Identities=14%  Similarity=0.247  Sum_probs=51.1

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL  394 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I  394 (616)
                      ...+++.+++++.|++++.|. ++.||++|.|++++.|.+++||++|.||++|+|. +++|++++.||++|.|
T Consensus       282 ~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i  353 (459)
T 4fce_A          282 IIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEI  353 (459)
T ss_dssp             EEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred             eeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEE
Confidence            344557777777777777775 5788888888888888777888888888777775 6666666666655544

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.41  E-value=2.3e-13  Score=131.78  Aligned_cols=109  Identities=20%  Similarity=0.197  Sum_probs=78.3

Q ss_pred             EEcCCcEECC--CCEECCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEec-eEECCCCEECCCcEE-eceEECC
Q 007143          329 YRALEIEQSR--SAQVGSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL-RHVIVCD  401 (616)
Q Consensus       329 ~~~~~v~i~~--~~~I~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I-~~siIg~  401 (616)
                      .+++++.|.+  .|.++.++.||++|.|+++++|.   .++||++|.||++|.|.. +...+......++.+ .+++||+
T Consensus        58 ~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~  137 (195)
T 3nz2_A           58 HLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIED  137 (195)
T ss_dssp             EECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECT
T ss_pred             hcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECC
Confidence            3677777777  46677888888888888888884   458999999999999964 334444444444444 3567788


Q ss_pred             CcEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          402 GVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      +|+||.+++|.+|++||++++||+|++|    |+++++..
T Consensus       138 ~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G  177 (195)
T 3nz2_A          138 DVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGG  177 (195)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEET
T ss_pred             CCEEcCCCEECCCCEECCCCEECCCCEEccccCCCcEEEc
Confidence            8888888888777777777777777764    44555444

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.41  E-value=1.4e-12  Score=133.04  Aligned_cols=103  Identities=27%  Similarity=0.332  Sum_probs=65.2

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---------ceEECCCCEECCCcEEec
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------GSYIWDNVIIEDGCELRH  396 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~~I~~  396 (616)
                      ++++++++.|+++ .|+.++.||++|.|+++++|+ +++||++|.|++++.|.         +++|+++|.||.+|.|  
T Consensus       116 ~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I--  192 (276)
T 3gos_A          116 GAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEV--  192 (276)
T ss_dssp             TCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEE--
T ss_pred             CCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEE--
Confidence            3444444444443 444466666666666666665 36666666666666663         2555555555555554  


Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEE
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKV  435 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v  435 (616)
                         ..+++||++|+|+.|++|..+++|++.+       .||+++++
T Consensus       193 ---~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svv  235 (276)
T 3gos_A          193 ---VEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVV  235 (276)
T ss_dssp             ---CTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             ---CCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEE
Confidence               6677777777777777777777777776       78888888

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.41  E-value=2.6e-12  Score=121.76  Aligned_cols=101  Identities=18%  Similarity=0.255  Sum_probs=77.0

Q ss_pred             eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      ..+++++++++.|++++.|.+.   +.||++|.|++++.|.     +++||++|.|+.++.|.+++|+++|.||.++.| 
T Consensus        27 i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i-  105 (173)
T 1xhd_A           27 ITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSII-  105 (173)
T ss_dssp             EEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEE-
T ss_pred             EECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEE-
Confidence            3467889999999999999765   8999999999999997     899999999999999999999999999988877 


Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                          ..++.||++++|+.+++|.++..|++++++
T Consensus       106 ----~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  135 (173)
T 1xhd_A          106 ----LDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (173)
T ss_dssp             ----CTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             ----cCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence                334444444444444444444444444443

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.41  E-value=3.6e-12  Score=131.92  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEe--------------ceE
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE--------------GSY  381 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~--------------~s~  381 (616)
                      +....++++++.++.|++.+.|.+++.||++|.|+++++|.     +++||++|.|+++|.|.              ...
T Consensus        31 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~  110 (305)
T 3t57_A           31 YCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLC  110 (305)
T ss_dssp             TCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEE
T ss_pred             CCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEE
Confidence            44455677777777777777777788888888888888885     57888888888888883              146


Q ss_pred             ECCCCEECCCcEE
Q 007143          382 IWDNVIIEDGCEL  394 (616)
Q Consensus       382 I~~~v~Ig~~~~I  394 (616)
                      |++++.|+++|+|
T Consensus       111 IG~~~~I~~~~~I  123 (305)
T 3t57_A          111 IGNNNEIREFCSI  123 (305)
T ss_dssp             ECSSCEECTTCEE
T ss_pred             ECCCcccCceEEE
Confidence            6666666666666

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.41  E-value=2e-12  Score=122.59  Aligned_cols=100  Identities=24%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~  395 (616)
                      ..+++++++++.|++++.|.++   +.||++|.|++++.|.     +++||++|.|+++|.|.+++|++++.||.++.|.
T Consensus        25 i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~  104 (173)
T 1v3w_A           25 VIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVIL  104 (173)
T ss_dssp             EEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEEC
T ss_pred             EeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEe
Confidence            3467889999999999999764   8999999999999996     5999999999999999999999999999988873


Q ss_pred             -ceEECCCcEECCCCEECCCCEECCCcEE
Q 007143          396 -HVIVCDGVIMKAGAVLKPGVVLSFKVVI  423 (616)
Q Consensus       396 -~siIg~~v~Ig~~~~I~~g~vIg~~v~I  423 (616)
                       ++.||++++||++++|.+++.|++++++
T Consensus       105 ~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v  133 (173)
T 1v3w_A          105 DGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             TTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence             3555555555544444444444443333

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.40  E-value=2.9e-12  Score=123.46  Aligned_cols=98  Identities=20%  Similarity=0.296  Sum_probs=71.3

Q ss_pred             eeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEe------ceEECCCCEECCCCEEeceEECCCCEECCCcE
Q 007143          323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS------DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE  393 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~------~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~  393 (616)
                      ...+++++++++.|++++.|..   ++.||++|.|++++.|.      +++||++|.||.+|.|.+++|+++|.||.+|.
T Consensus        47 ~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~  126 (191)
T 3ixc_A           47 RIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSI  126 (191)
T ss_dssp             EEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTTCE
T ss_pred             EEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCCCE
Confidence            3456788888888888888864   45889999999999996      89999999999999999888888888887776


Q ss_pred             EeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      |     .++++||++|+|++|++|.++..|++
T Consensus       127 I-----~~~~~Ig~~~~Ig~gsvV~~~~~i~~  153 (191)
T 3ixc_A          127 V-----MDRAVMEEGSMLAAGSLLTRGKIVKS  153 (191)
T ss_dssp             E-----CTTCEECTTCEECTTCEECTTCEECT
T ss_pred             E-----eCCeEECCCCEECCCCEECCCcCcCC
Confidence            6     34444444444444433333333333

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.38  E-value=4.2e-12  Score=139.22  Aligned_cols=199  Identities=11%  Similarity=0.110  Sum_probs=136.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCccccee---CCeehHHHHHHHHHH--------CC----CcEEEEEcCCcHHHHHHH
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEA--------AG----VAEVFVFCCAHSKQVIDY   91 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi---~g~PlI~y~Le~L~~--------~G----v~eI~vv~~~~~~~i~~~   91 (616)
                      .++.+||||||.||||+   ...||+|+||   .|+|+|+++++.|.+        .|    +..+++...+..+.+++|
T Consensus       101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~  177 (505)
T 1jv1_A          101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEF  177 (505)
T ss_dssp             TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHH
T ss_pred             CceEEEEEcCCccccCC---CCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHH
Confidence            56999999999999996   3789999999   799999999999887        36    555555555568899999


Q ss_pred             HHhcCCCCCCCcEEEEEeC---------------------CCccCHHHHHHHHHhcccc----c---CCEEEEeCcee-c
Q 007143           92 LENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVI----H---GDFVLISGDTV-S  142 (616)
Q Consensus        92 l~~~~~~~~~~~~i~~i~~---------------------~~~~~~gdalr~~~~~~~i----~---~dfLlv~gD~i-~  142 (616)
                      +++..|....+-+|.++.+                     ..+.|+|++++.+....++    .   ..|+|+++|.+ .
T Consensus       178 f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~  257 (505)
T 1jv1_A          178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (505)
T ss_dssp             HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             HHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcccc
Confidence            9875443111113555443                     2467999999877543222    1   33999999995 8


Q ss_pred             chhHHHHHHHHHHhhccCCCceEEEEEec-CCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhh
Q 007143          143 NMLLTQALQEHKERKKKDNNAVMTMIIKK-SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLA  221 (616)
Q Consensus       143 ~~~l~~~l~~h~~~~~~d~~a~mT~v~~~-~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~  221 (616)
                      ......++..|..+     ++.+|+.+.+ ..+     ..++|    ++..+....+++.|.++|...       .+.+.
T Consensus       258 ~~~d~~~lg~~~~~-----~~~~~~~v~~k~~~-----~e~~G----vl~~~dg~~~vvEy~E~p~~~-------~~~~~  316 (505)
T 1jv1_A          258 KVADPRFIGFCIQK-----GADCGAKVVEKTNP-----TEPVG----VVCRVDGVYQVVEYSEISLAT-------AQKRS  316 (505)
T ss_dssp             CTTCHHHHHHHHHT-----TCSEEEEEEECCST-----TCSCC----EEEEETTEEEEECGGGSCHHH-------HHCBC
T ss_pred             ccchHHHHHHHHHc-----CCCEEEEEEEccCC-----ccCcc----eEEEECCeEEEEEEeeCCHHH-------hhhcc
Confidence            78778899999875     4778877765 332     34667    666653334567777766410       00010


Q ss_pred             cCCceEEEeccccceeEeeCHhHHhhhhcC
Q 007143          222 ENPSISLHNDKQDCYIDICSPEVLSLFTDN  251 (616)
Q Consensus       222 ~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn  251 (616)
                        +.=...+++.++++|+++++++..+.+.
T Consensus       317 --~~g~~~~~~~N~~~~~f~l~~L~~i~~~  344 (505)
T 1jv1_A          317 --SDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (505)
T ss_dssp             --TTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             --cccccccceeeEEEEEecHHHHHHHHHh
Confidence              0001235678899999999998877654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.38  E-value=3e-12  Score=122.65  Aligned_cols=72  Identities=22%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             eeecceEEcCCcEECCCCEECCCc---EECCCCEECCCCEE------------eceEECCCCEECCCCEEeceEECCCCE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFT---VIGYGTKIGSNSKI------------SDSVIGEGCTIGSNVLIEGSYIWDNVI  387 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~---~Ig~~~~Ig~~~~I------------~~s~IG~~~~Ig~~~~I~~s~I~~~v~  387 (616)
                      ...+++.+++++.|++++.|.+++   .||++|.|++++.|            .+++||++|.||.+|.|.+++|+++|.
T Consensus        29 ~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~  108 (187)
T 3r3r_A           29 VVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVL  108 (187)
T ss_dssp             EEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSSEE
T ss_pred             EEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCCCE
Confidence            345678899999999999987654   99999999999999            689999999999999999988888888


Q ss_pred             ECCCcEE
Q 007143          388 IEDGCEL  394 (616)
Q Consensus       388 Ig~~~~I  394 (616)
                      ||.++.|
T Consensus       109 Ig~~~~I  115 (187)
T 3r3r_A          109 VGMGSIV  115 (187)
T ss_dssp             ECTTCEE
T ss_pred             ECCCCEE
Confidence            8887777

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.38  E-value=2.7e-12  Score=124.95  Aligned_cols=131  Identities=11%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             hccccccccCCCcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE
Q 007143          302 IQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI  377 (616)
Q Consensus       302 l~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I  377 (616)
                      +.++.|....+........+.....++++++++.|+++|.|.+++.||++|.|++++.|.    +++||++|.||++|+|
T Consensus        27 ~~~~~~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I  106 (205)
T 3vbi_A           27 LKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV  106 (205)
T ss_dssp             HHTTCCSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred             HhhcCCeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence            344444444433222222233333489999999999999999999999999999999993    4999999999999999


Q ss_pred             ece--------------------EECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          378 EGS--------------------YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       378 ~~s--------------------~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .++                    ....+++||++|.|     |.+++|..+++|+++|+|+.+++|..+  |++++++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~I-----G~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G  179 (205)
T 3vbi_A          107 YAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVII-----GAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVG  179 (205)
T ss_dssp             ESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEE-----CTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             EeCCCCcccccccCcccccccceeccCCEEECCCCEE-----CCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEc
Confidence            421                    11244555555555     666666666667777777777777665  677777766


Q ss_pred             cc
Q 007143          438 LQ  439 (616)
Q Consensus       438 ~~  439 (616)
                      .|
T Consensus       180 ~P  181 (205)
T 3vbi_A          180 VP  181 (205)
T ss_dssp             TT
T ss_pred             cC
Confidence            44

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.37  E-value=7.6e-12  Score=133.20  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             cEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEE
Q 007143          334 IEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI  377 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I  377 (616)
                      +.|++++.|+.++.||++|.|+++++| .+++||++|.|+++++|
T Consensus       161 ~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I  205 (374)
T 2iu8_A          161 CHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI  205 (374)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred             CEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEE
Confidence            333333333334444444444444444 24555555555555555

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.37  E-value=3.4e-12  Score=132.06  Aligned_cols=108  Identities=26%  Similarity=0.310  Sum_probs=61.5

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECC--------CCEECCCcEEe-
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWD--------NVIIEDGCELR-  395 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~--------~v~Ig~~~~I~-  395 (616)
                      +.+++.++.|+++|.|+++ +|+.++.||++|.|. +++||++|.||++|.|. ++.|+.        +++||++|.|. 
T Consensus       151 ~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~  229 (316)
T 3tk8_A          151 PAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA  229 (316)
T ss_dssp             TCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECT
T ss_pred             CeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECC
Confidence            3444444555555544433 444455555555554 35555555555555553 344444        45555555552 


Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEE
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKV  435 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v  435 (616)
                      +++|+.+++||++|+|++|++|+.+++|++.+       .||++++|
T Consensus       230 ~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvV  276 (316)
T 3tk8_A          230 RSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVV  276 (316)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             CCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEE
Confidence            44556666666666666666666666666665       67777777

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.37  E-value=2.6e-12  Score=140.65  Aligned_cols=69  Identities=26%  Similarity=0.283  Sum_probs=45.5

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR  395 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~  395 (616)
                      .+++.+++++.|++++.|+ ++.||++|.|+ ++.|.+++||++|.||++|.|. +++|++++.||++|.|.
T Consensus       290 ~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~  359 (468)
T 1hm9_A          290 KGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVK  359 (468)
T ss_dssp             ESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEE
T ss_pred             CCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEe
Confidence            3455566666666666653 56677777777 7777777777777777777776 66666666666555544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.37  E-value=2.5e-12  Score=140.11  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR  395 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~  395 (616)
                      ..+++.+|.++.|++++.|. ++.||++|.|++++.|.+++||++|.||++|.|. ++.|++++.||+++.|.
T Consensus       280 i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~  351 (456)
T 2v0h_A          280 IEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIK  351 (456)
T ss_dssp             EEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred             EcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEe
Confidence            34566777777777777774 7778888888888888888888888888888876 67777776666665553

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.36  E-value=2.8e-12  Score=123.33  Aligned_cols=111  Identities=19%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.+.|||||+|.|+||+     .||+|+|++|+|||+|+++.|..+|+++|+|++++..+++.+++...      ++.+ 
T Consensus         4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~------~~~~-   71 (197)
T 2wee_A            4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALD------GTDV-   71 (197)
T ss_dssp             SEEEEEEEECCCCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCCT------TSEE-
T ss_pred             CceEEEEECCCCcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhccC------CCEE-
Confidence            45889999999999996     49999999999999999999999999999999998878888777541      2333 


Q ss_pred             EEeCC-CccCHHHHHHHHHhcccc--c-CCEEEEeCce--ecchhHHHHHHH
Q 007143          107 TIESH-NIISAGDALRLIYEQNVI--H-GDFVLISGDT--VSNMLLTQALQE  152 (616)
Q Consensus       107 ~i~~~-~~~~~gdalr~~~~~~~i--~-~dfLlv~gD~--i~~~~l~~~l~~  152 (616)
                       +..+ ...|++++++...  ..+  . +.++++.||+  +....+..+++.
T Consensus        72 -~~~~~~~~g~~~~i~~al--~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (197)
T 2wee_A           72 -VVVEDVERGCAASLRVAL--ARVHPRATGIVLMLGDQPQVAPATLRRIIDV  120 (197)
T ss_dssp             -EECC----CCHHHHHHHH--TTSCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             -EECCCcccCHHHHHHHHH--HHhcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence             3332 3357888888543  334  2 2399999999  456688888876

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.36  E-value=7.5e-12  Score=124.98  Aligned_cols=90  Identities=24%  Similarity=0.400  Sum_probs=61.3

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC  392 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~  392 (616)
                      ...+++++++++.|++++.|++++.||++|.|+.++.|+ +++||++|+||+++.|.+         ++|+++|.||.+|
T Consensus        99 ~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~  178 (240)
T 3r8y_A           99 IIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANV  178 (240)
T ss_dssp             EEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTC
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCC
Confidence            344566677777777777777777777777777777775 777888888888887765         7777777777777


Q ss_pred             EE-eceEECCCcEECCCCEEC
Q 007143          393 EL-RHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       393 ~I-~~siIg~~v~Ig~~~~I~  412 (616)
                      +| .++.||++++|+++++|.
T Consensus       179 ~I~~~~~Ig~~~~I~~gsvV~  199 (240)
T 3r8y_A          179 VVLEGVTVGKGAVVAAGAVVT  199 (240)
T ss_dssp             EECTTCEECTTCEECTTCEEC
T ss_pred             EECCCcEECCCCEECCCCEEC
Confidence            76 444555444444444444

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.35  E-value=9.7e-12  Score=120.05  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             eeecceEEcCCcEECCCCEEC---CCcEECCCCEECCCCEEe-----------------ceEECCCCEECCCCEEeceEE
Q 007143          323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKIS-----------------DSVIGEGCTIGSNVLIEGSYI  382 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~-----------------~s~IG~~~~Ig~~~~I~~s~I  382 (616)
                      ...+++.+|+++.|++++.|.   +++.||++|.|+++++|.                 .++||+++.|+.++.+.++.|
T Consensus        26 ~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~I  105 (194)
T 3tv0_A           26 EIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKM  105 (194)
T ss_dssp             EEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEE
T ss_pred             EEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeee
Confidence            345677788888888888774   457889999999998884                 357888888888888877766


Q ss_pred             CCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          383 WDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       383 ~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ++++.|+.+++|           +.+++|+.+|+||.+++|..++.||++++|...|
T Consensus       106 g~~~~Ig~~~~I-----------~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~p  151 (194)
T 3tv0_A          106 GDNNVIESKAYV-----------GRNVILTSGCIIGACCNLNTFEVIPENTVIYGAD  151 (194)
T ss_dssp             CSSCEECTTCEE-----------CTTEEECSSCEECTTCEECCCEEECTTEEEESTT
T ss_pred             cccceecceeeE-----------CCeEEECCCCEECCCCEECCCcEECCCCEEECCC
Confidence            666666555444           4444444455555555555555566666665533

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.35  E-value=5.5e-12  Score=121.00  Aligned_cols=99  Identities=20%  Similarity=0.261  Sum_probs=71.7

Q ss_pred             eeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEece------------EECCCCEECCCCEEeceEECCCCE
Q 007143          323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKISDS------------VIGEGCTIGSNVLIEGSYIWDNVI  387 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~~s------------~IG~~~~Ig~~~~I~~s~I~~~v~  387 (616)
                      ...+++.+++++.|++++.|.+   .+.||++|.|++++.|..+            +||++|.||.+|.|.+++|+++|.
T Consensus        33 ~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~  112 (189)
T 3r1w_A           33 VIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVL  112 (189)
T ss_dssp             EEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSSEE
T ss_pred             EEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCCcE
Confidence            3456788899999999998874   4599999999999999654            999999999999999888888888


Q ss_pred             ECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143          388 IEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER  426 (616)
Q Consensus       388 Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~  426 (616)
                      ||.++.|     ..+++||++|+|+++++|.++..|+++
T Consensus       113 Ig~~~~i-----~~~v~Ig~~~~Ig~~s~V~~g~~i~~~  146 (189)
T 3r1w_A          113 IGMKSMI-----MDGAIVEDEVIVAAGATVSPGKVLESG  146 (189)
T ss_dssp             ECTTCEE-----CTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             ECCCCEE-----cCCCEECCCCEEccCCEECCCCEeCCC
Confidence            8777766     344444444444444333333333333

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.34  E-value=3.8e-12  Score=122.50  Aligned_cols=112  Identities=17%  Similarity=0.329  Sum_probs=87.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +++.|||||+|.|+||++     ||+|+|++|+|||+|+++.+..+|+++|+|++++..+++.+++...      ++.+.
T Consensus         4 ~~~~~iIlA~G~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~------~~~~~   72 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVELD------GLDIV   72 (199)
T ss_dssp             CCEEEEEEESSCCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCCT------TSEEE
T ss_pred             CceEEEEECCCCCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC------CCEEE
Confidence            458999999999999974     9999999999999999999999999999999998777888777541      34443


Q ss_pred             EEeCCCccCHHHHHHHHHhcccc--cCC-EEEEeCce--ecchhHHHHHHH
Q 007143          107 TIESHNIISAGDALRLIYEQNVI--HGD-FVLISGDT--VSNMLLTQALQE  152 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i--~~d-fLlv~gD~--i~~~~l~~~l~~  152 (616)
                      . ......|++++++...  ..+  ..+ ++++.||+  +....+..+++.
T Consensus        73 ~-~~~~~~g~~~~i~~al--~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (199)
T 2waw_A           73 L-VDDAGLGCSSSLKSAL--TWVDPTAEGIVLMLGDQPGITASAVASLIAG  120 (199)
T ss_dssp             E-CCCCCTTCCCHHHHHH--HTSCTTCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             E-CCCcccCHHHHHHHHH--HhhhccCCeEEEEeCCcccCCHHHHHHHHhh
Confidence            2 2233457777777543  233  334 99999999  456788888876

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.33  E-value=5.6e-12  Score=121.41  Aligned_cols=108  Identities=24%  Similarity=0.259  Sum_probs=75.4

Q ss_pred             EcC-CcEECCCCEE--CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEEe-ceEECC
Q 007143          330 RAL-EIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELR-HVIVCD  401 (616)
Q Consensus       330 ~~~-~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I~-~siIg~  401 (616)
                      ++. ++.|.+.+.+  +.++.||+++.|+++++|.   .+.||++|.||++|.|.+. ..++......++.+. .++||+
T Consensus        60 ~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~  139 (190)
T 3hjj_A           60 SADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGN  139 (190)
T ss_dssp             ESSSCCEECSSCEESSSTTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECT
T ss_pred             cCCCCcEECCCEEEEeCCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECC
Confidence            455 6777776666  6788888888888888885   6789999999999999643 333333334444432 456777


Q ss_pred             CcEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          402 GVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      +|+||.+|+|.+|++||++|+||+|++|    |+++++..
T Consensus       140 ~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G  179 (190)
T 3hjj_A          140 NVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGG  179 (190)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEET
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEc
Confidence            7777777777777777777777777765    44444443

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.31  E-value=1.9e-11  Score=120.32  Aligned_cols=104  Identities=14%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEEC
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMK  406 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig  406 (616)
                      ++..++.++++|.|+++++|++++.||++|.|. +++|+.+|.||++|.|. ++.|..+++||++|.|     |.+++|.
T Consensus       107 ~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I-----g~~~~i~  181 (220)
T 4ea9_A          107 VVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFL-----GVGARVI  181 (220)
T ss_dssp             EECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEE-----CTTCEEC
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEE-----CCCCEEc
Confidence            344444444444444444444444444444443 44444455555544443 3444455555555544     5555555


Q ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          407 AGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       407 ~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      .+++|+++|+||.+++|..+  +++++++...|
T Consensus       182 ~~~~Ig~~~~igagsvv~~~--v~~~~~~~G~P  212 (220)
T 4ea9_A          182 PGVTIGADTIVGAGGVVVRD--LPDSVLAIGVP  212 (220)
T ss_dssp             TTCEECTTCEECTTCEECSC--BCTTCEEETTT
T ss_pred             CCcEECCCCEECCCCEEccc--cCCCcEEEEeC
Confidence            55555555556666666554  56666665433

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.30  E-value=9.2e-11  Score=116.03  Aligned_cols=119  Identities=14%  Similarity=0.159  Sum_probs=82.0

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHH-HHHHHHhcCCCCCCCc
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQ-VIDYLENSEWFSQPNF  103 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~-i~~~l~~~~~~~~~~~  103 (616)
                      ...|.|||||+|.|+||+.   ..||+|+|++|+|||+|+++.|..++ +++|+|++++.... +++++.   +    +.
T Consensus        11 ~~~~~aiILAaG~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~---~----~~   80 (234)
T 1vpa_A           11 HHMNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF---H----EK   80 (234)
T ss_dssp             CCCEEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC---C----TT
T ss_pred             cccCeEEEEcCcchhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc---c----CC
Confidence            4568999999999999983   56999999999999999999999998 89999999876543 344332   1    12


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhc-ccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          104 TVKTIESHNIISAGDALRLIYEQ-NVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~-~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .+......  .+..++++..... .-...+ ++++.||+  +....+..+++.|+..
T Consensus        81 ~~~~~~gg--~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~  135 (234)
T 1vpa_A           81 VLGIVEGG--DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARET  135 (234)
T ss_dssp             EEEEEECC--SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred             ceEEeCCC--CcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence            33333221  1244444432211 000235 66777998  5566899999988763

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.30  E-value=3.1e-11  Score=116.60  Aligned_cols=107  Identities=17%  Similarity=0.151  Sum_probs=56.9

Q ss_pred             cceEEcCCcEEC--CCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECC
Q 007143          326 RGMYRALEIEQS--RSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD  401 (616)
Q Consensus       326 ~~i~~~~~v~i~--~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~  401 (616)
                      +..++++++.|+  +++.|+++++|+.+++||+++.|. +++|+.+|.||++|.|. ++.|..+++||++|.|     +.
T Consensus        80 ~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I-----g~  154 (194)
T 3bfp_A           80 KSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFL-----GI  154 (194)
T ss_dssp             TTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE-----CT
T ss_pred             CeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEE-----cC
Confidence            334444455555  555555555555555555555552 44555555555555554 3555555555555554     45


Q ss_pred             CcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          402 GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ++.|..+++|+++|+||.+++|..+  +++++++...|
T Consensus       155 ~~~i~~~~~Ig~~~~Igagsvv~~~--v~~~~~~~G~P  190 (194)
T 3bfp_A          155 NSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVP  190 (194)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSC--BCSCCEECCCC
T ss_pred             CCEECCCCEECCCCEECCCCEEccc--cCCCCEEEeec
Confidence            5555555555555555556666554  56666665543

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.25  E-value=1.9e-11  Score=133.43  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=80.4

Q ss_pred             eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCc
Q 007143          324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGV  403 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v  403 (616)
                      ..+++.+++++.|+++|.| .++.||++|.|+++|+|.+++||++|.||.++.|.+++||++|.||.+|.|.+.. ...+
T Consensus       288 i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~-~~~v  365 (496)
T 3c8v_A          288 IKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSE-SSPL  365 (496)
T ss_dssp             EESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCS-SSCE
T ss_pred             EeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCC-Ccce
Confidence            3467889999999999999 7899999999999999999999999999999999999999999999999996541 0113


Q ss_pred             EECCCCEECCCCEEC--CCcEECCCCEEC
Q 007143          404 IMKAGAVLKPGVVLS--FKVVIGERFVVP  430 (616)
Q Consensus       404 ~Ig~~~~I~~g~vIg--~~v~Ig~~~~v~  430 (616)
                      +||++|+|+.|++|.  +++.|++++++.
T Consensus       366 ~IG~~a~IGagsvV~~~~~~~I~~~s~v~  394 (496)
T 3c8v_A          366 KIGDGCVVMPHTIIDLEEPLEIPAGHLVW  394 (496)
T ss_dssp             EECTTCEECTTCEEECSSCEEECSSEEEC
T ss_pred             EECCCCEECCCCEEecCCCcEeCCCCEEE
Confidence            444444444444444  445555554444

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.25  E-value=6.9e-11  Score=117.57  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=71.7

Q ss_pred             CCcccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC
Q 007143           21 PDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ  100 (616)
Q Consensus        21 ~~~~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~  100 (616)
                      +++...+++.|||||+|.|+||++   . ||+|+|++|+|||+|+++.  ..++++|+|++++   .+.+ +..      
T Consensus        18 ~~~~~~M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~---~~~~-~~~------   81 (236)
T 2px7_A           18 DDDDKHMEVSVLIPAAGNGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPP---GAEP-PKG------   81 (236)
T ss_dssp             ------CCCEEEEECCC----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECT---TCCC-CTT------
T ss_pred             cccccCCceEEEEEcCCCCccCCC---C-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCH---HHHH-hhc------
Confidence            455566677899999999999985   4 9999999999999999999  7789999999985   1222 211      


Q ss_pred             CCcEEEEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          101 PNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       101 ~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .+  +.++..  ..+...+++....  .+..+ +|++.||+  +....+..+++.+++.
T Consensus        82 ~~--v~~~~~--~~~~~~~i~~al~--~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~  134 (236)
T 2px7_A           82 LG--AVFLEG--GATRQASVARLLE--AASLPLVLVHDVARPFVSRGLVARVLEAAQRS  134 (236)
T ss_dssp             CS--CEEEEC--CSSHHHHHHHHHH--HCCSSEEEECCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CC--cEEEeC--CCchHHHHHHHHH--HcCCCeEEEecCccccCCHHHHHHHHHHHHhc
Confidence            12  344432  2345566654332  23345 88899997  4556789999988753

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.22  E-value=3.4e-11  Score=124.09  Aligned_cols=94  Identities=27%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             CCcEECCCCEECCCcEE--CCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEECCC
Q 007143          332 LEIEQSRSAQVGSFTVI--GYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAG  408 (616)
Q Consensus       332 ~~v~i~~~~~I~~~~~I--g~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~  408 (616)
                      .++.|++++.|+++++|  |.++.||++     ++||++|.|+.+|+|+ ++.+++++.++.++. .+++||++|+||++
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~-----~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGag  235 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGET-----AIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTG  235 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTT-----CEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTT
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCC-----cEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCC
Confidence            34445555555545555  333333333     3555555666555553 345556666655542 35678888888888


Q ss_pred             CEECCCCEECCCcEECCCCEECC
Q 007143          409 AVLKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       409 ~~I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      |+|.++++||++|+||+|++|..
T Consensus       236 a~Ilggv~IG~~a~IGagsvV~~  258 (313)
T 3q1x_A          236 AKVLGNIIVGSHVRIGANCWIDR  258 (313)
T ss_dssp             CEEESSCEECSSEEECTTCEECS
T ss_pred             CEECCCcEECCCCEECCCCEECC
Confidence            88887888888888887777644

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.22  E-value=3.8e-11  Score=115.40  Aligned_cols=101  Identities=23%  Similarity=0.298  Sum_probs=61.5

Q ss_pred             EcCCcEECCCCEE--CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEE-eceEECCC
Q 007143          330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCEL-RHVIVCDG  402 (616)
Q Consensus       330 ~~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I-~~siIg~~  402 (616)
                      +++++.|.+.+.+  +.++.||+++.|+.+++|.   ..+||++|.||++|.|... ...+......++.+ ..++||++
T Consensus        59 ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~  138 (188)
T 3srt_A           59 VGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDN  138 (188)
T ss_dssp             CCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSS
T ss_pred             cCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCC
Confidence            4455555555554  3567777777777777774   4479999999999888532 12221111122222 24555777


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      |+||.+|+|.+|++||++|+||++++|.
T Consensus       139 v~IG~~~~I~~gv~IG~~~vIgagsvV~  166 (188)
T 3srt_A          139 VWIGGGVIITPGITIGDNVVIGAGSVVT  166 (188)
T ss_dssp             CEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred             cEEcCCCEECCCcEECCCCEECCCCEEC
Confidence            7777777777666666666666666643

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.20  E-value=6.8e-11  Score=114.28  Aligned_cols=76  Identities=28%  Similarity=0.375  Sum_probs=64.9

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEece-------------EECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRHV-------------IVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~s-------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   ..+||++|.||++|.|...             .++..++||++|+|+.+|+|.++|+||+
T Consensus        76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  155 (195)
T 3nz2_A           76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGA  155 (195)
T ss_dssp             TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECC
Confidence            45677777777777774   3489999999999999653             4778899999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       156 ~~vIgagsvV~~  167 (195)
T 3nz2_A          156 RSVVAANSVVNQ  167 (195)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEEcc
Confidence            999999999986

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.20  E-value=5.5e-11  Score=124.93  Aligned_cols=141  Identities=14%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             ccchhhccC--hhhHHHHhhhhhcccc---ccc---cCCCcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCE
Q 007143          282 SSYAARIDN--YRSYDIVSKDIIQRWT---YPY---VPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTK  353 (616)
Q Consensus       282 ~~y~~~V~s--~~sY~~a~~dil~r~~---~p~---~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~  353 (616)
                      ..||.+.+.  +..|.....++..+-.   +++   .|...     .|..      ...++.|++++.|++++.||++|.
T Consensus       169 ~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~-----~~v~------p~~gv~I~p~a~I~~~a~IG~gv~  237 (387)
T 2rij_A          169 NVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFL-----AHII------PEDNTRILESSKVRMGASLAAGTT  237 (387)
T ss_dssp             CEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGG-----GTCC------CCTTCEESCGGGBBTTCBCCTTCE
T ss_pred             eeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchh-----cccc------CCCCEEEcCCCEECCCeEEcCCCE
Confidence            368888777  5677777666653210   110   11100     0111      112444555555555555555555


Q ss_pred             ECCC-CEEe-ceE-ECCCCEECCCCEEe-ceEECCCCEECCCcEE----ec-----eEECCCcEECCCCEECCCCEECCC
Q 007143          354 IGSN-SKIS-DSV-IGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL----RH-----VIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       354 Ig~~-~~I~-~s~-IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I----~~-----siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      |+++ +.|. ++. ||+ |.|+.  +|. +++||++|.|+.++.|    .+     ++||++|+||.+++  +|++||++
T Consensus       238 Ig~g~a~Ig~nv~vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdg  312 (387)
T 2rij_A          238 IMPGASYVNFNAGTTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDN  312 (387)
T ss_dssp             ECSSSCEECTTCEESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTT
T ss_pred             EeCCeeEECCCcEEECC-EEEee--EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCC
Confidence            5553 4443 334 566 65543  443 5667777777777754    32     78899999999988  68899999


Q ss_pred             cEECCCCEECCCCEEccc
Q 007143          421 VVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       421 v~Ig~~~~v~~~~~v~~~  438 (616)
                      |+||+|++|.+++.+...
T Consensus       313 avIGAGsVVt~dv~i~~~  330 (387)
T 2rij_A          313 CIVDAGIAVLEGTKFLLK  330 (387)
T ss_dssp             CEECTTCEECTTCEEEEC
T ss_pred             CEECCCCEECCCceeeec
Confidence            999999999988888653

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.19  E-value=6.4e-11  Score=114.86  Aligned_cols=109  Identities=20%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             cCCcEECCCCEE--CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceE-ECCCCEECCCcEE-eceEECCCc
Q 007143          331 ALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY-IWDNVIIEDGCEL-RHVIVCDGV  403 (616)
Q Consensus       331 ~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~-I~~~v~Ig~~~~I-~~siIg~~v  403 (616)
                      +.++.|.+...+  +.++.||++|.|+++++|.   .++||++|.||++|.|..+. ..+......+..+ ..++||++|
T Consensus        58 g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v  137 (199)
T 3ftt_A           58 TDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNT  137 (199)
T ss_dssp             CSSEEECSSEEESSSTTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSE
T ss_pred             CCCeEEeCCEEEEecCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCc
Confidence            444555555444  5667777777777777773   46899999999999985432 2222222222222 344567777


Q ss_pred             EECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          404 IMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       404 ~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      +||.+++|.+|++||++|+||+|++|    |+++++...|
T Consensus       138 ~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~P  177 (199)
T 3ftt_A          138 WFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNP  177 (199)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTT
T ss_pred             EEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEEC
Confidence            77777777777777777777777764    5555555443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.19  E-value=4.5e-11  Score=124.62  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=73.4

Q ss_pred             ceEEcCCcEECCCCEECC-CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcE
Q 007143          327 GMYRALEIEQSRSAQVGS-FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI  404 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~-~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~  404 (616)
                      .++...+.....++.|++ ++.|++++.|++++.|. +++||++|.||++|+|.+|+|+++++|+++++|.+++|+++|.
T Consensus        46 ~i~~e~nl~~~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~  125 (334)
T 2pig_A           46 WVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA  125 (334)
T ss_dssp             EESSTTSBCSSSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEE
T ss_pred             eEeccCCcccCCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeE
Confidence            344445666677788888 88889999999999995 7899999999999999999999999999999999888777777


Q ss_pred             ECCCCEECCCCE
Q 007143          405 MKAGAVLKPGVV  416 (616)
Q Consensus       405 Ig~~~~I~~g~v  416 (616)
                      |+.++++.+++.
T Consensus       126 I~~~~~i~~~s~  137 (334)
T 2pig_A          126 IYGDARVLNQSE  137 (334)
T ss_dssp             ECTTCEEESSCE
T ss_pred             EecCCEEeCCEE
Confidence            666665544443

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.18  E-value=9.1e-11  Score=119.02  Aligned_cols=84  Identities=18%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEec---------eEECCCCEECCCcEEeceE
Q 007143          333 EIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCELRHVI  398 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I~~si  398 (616)
                      ++.|++++.|+++++|..++.|+.+|.|.     .++||++|.|++++.|.+         ++|+++|.||.|+.| ++.
T Consensus       173 gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-gVt  251 (332)
T 3fsy_A          173 GAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL-GIS  251 (332)
T ss_dssp             TEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE-CSC
T ss_pred             CCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE-eeE
Confidence            33333333333333333344444444431     378888888888888864         778888888888877 555


Q ss_pred             ECCCcEECCCCEECCCCEE
Q 007143          399 VCDGVIMKAGAVLKPGVVL  417 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vI  417 (616)
                      ||++|+||+|++|..+++|
T Consensus       252 IGd~~iIGAGSVVtkdt~I  270 (332)
T 3fsy_A          252 LGDDCVVEAGLYVTAGTRV  270 (332)
T ss_dssp             BCSSCEECTTCEECTTCEE
T ss_pred             ECCCCEECCCCEECCCCEE
Confidence            5555555555555554443

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.18  E-value=5.9e-11  Score=121.28  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEec---------eEECCCCEECCCcEE
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL  394 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I  394 (616)
                      ++++++.|++.+.|..++.||.+|.|..++.++ ++||++|.|+++|.|.+         ++||++|.||.|+.|
T Consensus       198 ~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI  271 (347)
T 3r5d_A          198 YIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI  271 (347)
T ss_dssp             EECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE
Confidence            333333333333333333333333333333222 55555555555555543         344444444444444

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.17  E-value=1.1e-10  Score=113.33  Aligned_cols=110  Identities=20%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             EcCCcEECCCC--EECCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEE-eceEECCC
Q 007143          330 RALEIEQSRSA--QVGSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCEL-RHVIVCDG  402 (616)
Q Consensus       330 ~~~~v~i~~~~--~I~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I-~~siIg~~  402 (616)
                      ++.++.|.+..  .++.++.||+++.|+.+++|.   .++||++|.||++|.|..+ ...+......+..+ ..++||++
T Consensus        58 ig~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~  137 (203)
T 1krr_A           58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN  137 (203)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTT
T ss_pred             cCCCcEEcCCeEEEeCCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCC
Confidence            44555555553  346788888888888888885   4789999999999999643 22222222333333 45677888


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      |+||.+|+|.+|++||++|+||+|++|    |+++++...|
T Consensus       138 v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~G~P  178 (203)
T 1krr_A          138 VWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVP  178 (203)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTT
T ss_pred             eEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEEccC
Confidence            888888888888888888888888774    5555555433

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.17  E-value=3.4e-11  Score=118.64  Aligned_cols=109  Identities=16%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             eEEcCCcEECCCCEEC-CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCc-------------
Q 007143          328 MYRALEIEQSRSAQVG-SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC-------------  392 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~-~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~-------------  392 (616)
                      +.+++++.|++++.|+ .+..+.++|.|++++.|+ +++||++|.|+++|+|..  ++.++.+...+             
T Consensus        30 ~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~--~g~~~~~~~~~~~~~~~~~~~~~~  107 (220)
T 4hur_A           30 TITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIM--NGANHRMDGSTYPFHLFRMGWEKY  107 (220)
T ss_dssp             GCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEEC--GGGCCCCSSCCCCGGGGCTTGGGG
T ss_pred             eEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEE--CCCCcccCCcceeeeeeccccccc
Confidence            3344444444444442 122233467777777775 467888888888887620  12222222211             


Q ss_pred             --------EEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE----CCCCEEccc
Q 007143          393 --------ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLL  438 (616)
Q Consensus       393 --------~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~  438 (616)
                              ...+++||++|+||.+|+|.+|++||++|+||++++|    ++++++...
T Consensus       108 ~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~  165 (220)
T 4hur_A          108 MPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGN  165 (220)
T ss_dssp             CCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETT
T ss_pred             ccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCC
Confidence                    1234667778888887777777777777777777775    455555543

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.17  E-value=2.1e-10  Score=110.25  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   ...||++|.|+++|.|..             +.++..++||++|+|+.+|+|.+||+||+
T Consensus        78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  157 (190)
T 3hjj_A           78 NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGD  157 (190)
T ss_dssp             TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECC
Confidence            56778888888888885   568999999999999943             56678899999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       158 ~~vIgagsvV~~  169 (190)
T 3hjj_A          158 NAVIASGAVVTK  169 (190)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECc
Confidence            999999999985

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.15  E-value=1.3e-10  Score=116.93  Aligned_cols=107  Identities=19%  Similarity=0.270  Sum_probs=81.8

Q ss_pred             cceEEcCCcEECCCCEEC--CCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEece--------------EECCC
Q 007143          326 RGMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEGS--------------YIWDN  385 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~s--------------~I~~~  385 (616)
                      +.+++++++.|.+++.|.  .++.||++|.|++++.|.    +++||++|.||++|.|.++              .+..+
T Consensus        84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~  163 (252)
T 3jqy_B           84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD  163 (252)
T ss_dssp             CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred             CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence            457788888888888884  478999999999999997    8999999999999999764              23333


Q ss_pred             CEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      ++||++|.|     |.++.|.++++|+++|+||.+++|..+  ||+++++...|
T Consensus       164 v~Igd~v~I-----G~~a~I~~gv~IG~~~~IgagsvV~~~--vp~~~~~~G~P  210 (252)
T 3jqy_B          164 IIISSYVWV-----GRNVSIMKGVSVGSGSVIGYGSIVTKD--VPSMCAAAGNP  210 (252)
T ss_dssp             EEECSSCEE-----CSSEEECTTCEECTTCEECTTCEECSC--BCTTEEEEETT
T ss_pred             eEEecCcEE-----CCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccC
Confidence            455555554     666666777777777777777777765  78888886644

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=99.15  E-value=2.2e-12  Score=123.01  Aligned_cols=49  Identities=35%  Similarity=0.531  Sum_probs=46.7

Q ss_pred             CchhhHHHHHHHHHHHHHHcCCCCCcEEEeecccccccCCChHHhhccc
Q 007143          561 DDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLE  609 (616)
Q Consensus       561 ~d~~~F~~e~~~~l~r~~~~~~~~d~~~lEin~lr~a~n~~~~~v~~~~  609 (616)
                      ||.+.|++||++||+||+++|+++||++|||||||||||+|++||||+.
T Consensus         9 ~~~~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av   57 (182)
T 3jui_A            9 DDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVL   57 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999975

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.14  E-value=1.1e-10  Score=111.56  Aligned_cols=105  Identities=24%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             CcEECCC--CEECCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceEEC-CCCEECCCcE-EeceEECCCcEE
Q 007143          333 EIEQSRS--AQVGSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSYIW-DNVIIEDGCE-LRHVIVCDGVIM  405 (616)
Q Consensus       333 ~v~i~~~--~~I~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~I~-~~v~Ig~~~~-I~~siIg~~v~I  405 (616)
                      ++.|.+.  +.++.++.||+++.|+++++|.   .++||++|.||++|.|...... +...-..+.. -.+++||++|+|
T Consensus        58 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~I  137 (182)
T 1ocx_A           58 EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWI  137 (182)
T ss_dssp             SEEECSCEEESSSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEE
T ss_pred             CEEEeCCEEEEeCCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEE
Confidence            4445554  3345677777777777777773   6789999999999998643110 0000001111 234556777777


Q ss_pred             CCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          406 KAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       406 g~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      |.+++|.+|++||++|+||+|++|    |+++++..
T Consensus       138 g~~a~I~~gv~IG~~~vIgagsvV~~dip~~~vv~G  173 (182)
T 1ocx_A          138 GGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGG  173 (182)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSCBCSSEEEET
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCcCCCCcEEEc
Confidence            777777777777777777777664    44555444

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.14  E-value=1e-10  Score=112.10  Aligned_cols=107  Identities=25%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             cCCcEECCC--CEECCCcEECCCCEECCCCEE---eceEECCCCEECCCCEEeceEE-CCCCEECCCcE-EeceEECCCc
Q 007143          331 ALEIEQSRS--AQVGSFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIEGSYI-WDNVIIEDGCE-LRHVIVCDGV  403 (616)
Q Consensus       331 ~~~v~i~~~--~~I~~~~~Ig~~~~Ig~~~~I---~~s~IG~~~~Ig~~~~I~~s~I-~~~v~Ig~~~~-I~~siIg~~v  403 (616)
                      +.++.|.+.  +.++.++.||+++.|+++++|   .+++||++|.||++|.|..... .+......+.. -..++||++|
T Consensus        58 g~~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v  137 (185)
T 2p2o_A           58 GERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNV  137 (185)
T ss_dssp             CSCEEECSCEEESCSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSC
T ss_pred             CCCcEEeccEEEEecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCe
Confidence            334444443  334567777778888777777   4678999999999999964311 00000001111 2345567777


Q ss_pred             EECCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          404 IMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       404 ~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      +||.+|+|.+|++||++|+||+|++|    |+++++..
T Consensus       138 ~IG~~~~I~~gv~IG~~~vIgagsvV~~~vp~~~vv~G  175 (185)
T 2p2o_A          138 WIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGG  175 (185)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEc
Confidence            77777777777777777777777664    44445443

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.14  E-value=6.2e-11  Score=129.31  Aligned_cols=136  Identities=13%  Similarity=0.166  Sum_probs=97.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHCCCc-----EEEEEcCCc-HHHHHHHHH-hcCCC-
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAAGVA-----EVFVFCCAH-SKQVIDYLE-NSEWF-   98 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~Gv~-----eI~vv~~~~-~~~i~~~l~-~~~~~-   98 (616)
                      ++.+||||||.||||+   ...||+|+||+ |+|+|+++++.|...|..     .++|+++.. .+.+++|++ +..+. 
T Consensus        75 k~avViLAGGlGTRLg---~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~fG  151 (505)
T 2oeg_A           75 STVVLKLNGGLGTGMG---LCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLY  151 (505)
T ss_dssp             TEEEEEEECCCCGGGT---CCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHHHH
T ss_pred             cceEEEEcCCcccccC---CCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhccC
Confidence            5789999999999999   57899999999 999999999999998644     566777654 788999998 53321 


Q ss_pred             CCCCcEEEEE--------e---------------CCCccCHHHHHHHHHhcc----cc---cCCEEEEeCceecc-hhHH
Q 007143           99 SQPNFTVKTI--------E---------------SHNIISAGDALRLIYEQN----VI---HGDFVLISGDTVSN-MLLT  147 (616)
Q Consensus        99 ~~~~~~i~~i--------~---------------~~~~~~~gdalr~~~~~~----~i---~~dfLlv~gD~i~~-~~l~  147 (616)
                      ..+ -+|.+.        .               ...+.|+|++++.+....    ++   ...|+|.++|.++. .|+ 
T Consensus       152 l~~-~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-  229 (505)
T 2oeg_A          152 QVF-DSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-  229 (505)
T ss_dssp             TTC-CCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-
T ss_pred             CCc-cceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-
Confidence            100 012211        1               112359999998663222    22   13399999999874 467 


Q ss_pred             HHHHHHHHhhccCCCceEEEEEecCC
Q 007143          148 QALQEHKERKKKDNNAVMTMIIKKSK  173 (616)
Q Consensus       148 ~~l~~h~~~~~~d~~a~mT~v~~~~~  173 (616)
                      .++..|.++     ++.+||.+.+..
T Consensus       230 ~llg~~~~~-----~ad~~~~v~~k~  250 (505)
T 2oeg_A          230 RVLAYMEKE-----KIDFLMEVCRRT  250 (505)
T ss_dssp             HHHHHHHHH-----TCSEEEEEEECC
T ss_pred             HHHHHHHhc-----CCcEEEEEEEec
Confidence            888999886     478888777654

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.14  E-value=1.2e-10  Score=113.03  Aligned_cols=76  Identities=22%  Similarity=0.238  Sum_probs=65.1

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   ..+||++|.||++|.|..             ..++..++||++|+|+.+|+|.+||+||+
T Consensus        74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  153 (199)
T 3ftt_A           74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGE  153 (199)
T ss_dssp             TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECT
T ss_pred             CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECC
Confidence            45677777777777774   358999999999999954             35788999999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       154 ~~vIgagsvV~~  165 (199)
T 3ftt_A          154 GSVIGAGSVVTK  165 (199)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECc
Confidence            999999999986

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.13  E-value=6.5e-11  Score=114.41  Aligned_cols=106  Identities=18%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.|||||+|.|+||++     ||+|+|++|+|||+|+++.|..+   +++|++++..+.+.+++..       ++   +
T Consensus         2 ~~~~iIlAgG~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~~-------~~---~   63 (197)
T 3d5n_A            2 NIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLMD-------QI---V   63 (197)
T ss_dssp             CEEEEEECSCCTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTHHHHGGGCTT-------SC---E
T ss_pred             ceEEEEECCcCcccCCC-----CeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCHHHHHHHhcC-------CE---E
Confidence            47899999999999985     99999999999999999999877   8888998876666655431       33   4


Q ss_pred             EeCCC-ccCHHHHHHHHHhcccccC-C-EEEEeCce--ecchhHHHHHHHH
Q 007143          108 IESHN-IISAGDALRLIYEQNVIHG-D-FVLISGDT--VSNMLLTQALQEH  153 (616)
Q Consensus       108 i~~~~-~~~~gdalr~~~~~~~i~~-d-fLlv~gD~--i~~~~l~~~l~~h  153 (616)
                      +..+. ..|++++++...  ..+.+ + |+++.||+  +....+..+++.+
T Consensus        64 v~~~~~~~G~~~si~~al--~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~  112 (197)
T 3d5n_A           64 IYNPFWNEGISTSLKLGL--RFFKDYDAVLVALGDMPFVTKEDVNKIINTF  112 (197)
T ss_dssp             EECTTGGGCHHHHHHHHH--HHTTTSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred             EECCCCCCCHHHHHHHHH--HhhccCCcEEEEeCCccccCHHHHHHHHHHh
Confidence            44333 368888877543  23433 4 99999999  4455788888765

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.13  E-value=6.3e-11  Score=117.56  Aligned_cols=116  Identities=14%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +.+.|||||+|.|+||+   ...||+|+|++|+|||+|+++.|..++ +++|+|++++..+.+.+ +..  +..   ..+
T Consensus         6 ~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~--~~~---~~v   76 (236)
T 1i52_A            6 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL--ANH---PQI   76 (236)
T ss_dssp             CCEEEEEEECCCCGGGC---CSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG--GGC---TTE
T ss_pred             CceeEEEECCcCccccC---CCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh--cCC---CCE
Confidence            45899999999999998   256999999999999999999999987 89999999876554544 322  100   134


Q ss_pred             EEEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      .++...  .|..++++...  ..+. .+ ||++.||+  +....+..+++.|++
T Consensus        77 ~~~~~~--~g~~~~i~~al--~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~  126 (236)
T 1i52_A           77 TVVDGG--DERADSVLAGL--KAAGDAQWVLVHDAARPCLHQDDLARLLALSET  126 (236)
T ss_dssp             EEEECC--SSHHHHHHHHH--HTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGT
T ss_pred             EEECCC--CCHHHHHHHHH--HhcCCCCEEEEEcCccccCCHHHHHHHHHHHHh
Confidence            445432  46667766533  2343 34 89999998  445578888887654

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.12  E-value=3.3e-10  Score=109.99  Aligned_cols=76  Identities=25%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             ceEECCCCEECCCCEEec---eEECCCCEECCCcEEece-------------EECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIEG---SYIWDNVIIEDGCELRHV-------------IVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~~---s~I~~~v~Ig~~~~I~~s-------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.+   .+||++|.|+.+|.|..+             .++..++||++|+|+.+|+|.+||+||+
T Consensus        75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~  154 (203)
T 1krr_A           75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  154 (203)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence            567888888888888863   789999999999998643             3677899999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       155 ~~vIgagsvV~~  166 (203)
T 1krr_A          155 NSVIGAGSIVTK  166 (203)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECC
Confidence            999999999976

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.11  E-value=3.6e-10  Score=124.92  Aligned_cols=113  Identities=13%  Similarity=0.095  Sum_probs=69.6

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCE---------------------------------Ee-ceEECCC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSK---------------------------------IS-DSVIGEG  368 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~---------------------------------I~-~s~IG~~  368 (616)
                      +....+.+++++.|.+++.+.+++.|+.+|.|++++.                                 ++ +++||++
T Consensus       279 ~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~  358 (501)
T 3st8_A          279 WIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGAD  358 (501)
T ss_dssp             EECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             cccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccc
Confidence            3445556666666666666655565555555554443                                 32 4566666


Q ss_pred             CEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC-------CCEECCCcEECCCCEECCCCEE
Q 007143          369 CTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKV  435 (616)
Q Consensus       369 ~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~-------g~vIg~~v~Ig~~~~v~~~~~v  435 (616)
                      |.||.+|.|.+++|++++.|+..+.|.+++||.+|.||+++++-.       +++||++|.||.++.|.++.+|
T Consensus       359 v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~I  432 (501)
T 3st8_A          359 GKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTI  432 (501)
T ss_dssp             CEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEE
T ss_pred             cccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEE
Confidence            666666667778888888888888888888888888888765421       2455555555544443333333

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.10  E-value=1.2e-10  Score=120.03  Aligned_cols=86  Identities=20%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             cceEEcCCcEECCCCEE--CCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec-----eEECCCCEECCCcEEe-c
Q 007143          326 RGMYRALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELR-H  396 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~-~  396 (616)
                      .++.+++++.|++++.|  +.+++||++|.||++|.|. +++||.++.|++++.+..     ++|+++|.||.+|+|. +
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilgg  241 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGN  241 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESS
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCC
Confidence            46778888888888888  5678888888888888885 677888888877777743     4777777777777662 2


Q ss_pred             eEECCCcEECCCCEE
Q 007143          397 VIVCDGVIMKAGAVL  411 (616)
Q Consensus       397 siIg~~v~Ig~~~~I  411 (616)
                      +.||++|+||++++|
T Consensus       242 v~IG~~a~IGagsvV  256 (313)
T 3q1x_A          242 IIVGSHVRIGANCWI  256 (313)
T ss_dssp             CEECSSEEECTTCEE
T ss_pred             cEECCCCEECCCCEE
Confidence            333333333333333

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.10  E-value=2.3e-10  Score=110.97  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=79.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      ++.+||||+|.|+||+    ..||+|+|++|+|||+|+++.|.. ++++|+|++++..+.+.    .  +    ++.  +
T Consensus         6 ~~~~iILAgG~s~Rmg----~~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~--~----~~~--~   68 (201)
T 1e5k_A            6 TITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQEIYQ----A--S----GLK--V   68 (201)
T ss_dssp             SEEEEEECCCCCSSSC----SSCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T--T----SCC--E
T ss_pred             cceEEEEcCCCCCcCC----CCCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h--c----CCe--E
Confidence            4899999999999998    259999999999999999999985 58999999987654332    1  1    233  3


Q ss_pred             EeCCCc--cCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHH
Q 007143          108 IESHNI--ISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQE  152 (616)
Q Consensus       108 i~~~~~--~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~  152 (616)
                      +.....  .|.+.+++....  .+..+ ||++.||+  +....+..+++.
T Consensus        69 v~~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           69 IEDSLADYPGPLAGMLSVMQ--QEAGEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             ECCCTTCCCSHHHHHHHHHH--HCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             EecCCCCCCCHHHHHHHHHH--hCCCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            433322  577887775432  34445 99999999  556678888765

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.09  E-value=1.3e-09  Score=115.49  Aligned_cols=198  Identities=11%  Similarity=0.126  Sum_probs=130.6

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCccccee---CCeehHHHHHHHHHH-------------CCCcEEEEEcCCcHHHHH
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEA-------------AGVAEVFVFCCAHSKQVI   89 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi---~g~PlI~y~Le~L~~-------------~Gv~eI~vv~~~~~~~i~   89 (616)
                      +.++.+|+||+|.||||+.   ..||+|+||   .|+|+++++++.+.+             .++.-++....+..+.++
T Consensus        33 ~gkvavvlLAGG~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~  109 (405)
T 3oc9_A           33 QGKTALITPAGGQGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN  109 (405)
T ss_dssp             TTCEEEEEECCSBCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred             cCceEEEEecCCCcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence            3468999999999999965   789999999   899999999999864             466654444445688999


Q ss_pred             HHHHhcCCCCCCCcEEEEEe---------------------CCCccCHHHHHHHHHhccccc-----C-C-EEEEeCce-
Q 007143           90 DYLENSEWFSQPNFTVKTIE---------------------SHNIISAGDALRLIYEQNVIH-----G-D-FVLISGDT-  140 (616)
Q Consensus        90 ~~l~~~~~~~~~~~~i~~i~---------------------~~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~-  140 (616)
                      +|+++..|.....-+|.++.                     ...+.|.|++.+.+....++.     + . +++.++|. 
T Consensus       110 ~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~  189 (405)
T 3oc9_A          110 NYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNI  189 (405)
T ss_dssp             HHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBT
T ss_pred             HHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCc
Confidence            99988554322111244332                     223468999999776544432     2 3 66666699 


Q ss_pred             ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhh
Q 007143          141 VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLL  220 (616)
Q Consensus       141 i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~  220 (616)
                      +.......++..|.++     ++.+++-+.+....    ..+.|    ++.......+|+.|.+.|.. ...-.      
T Consensus       190 L~~~~Dp~~lg~~~~~-----~~d~~~kvv~k~~~----dek~G----vl~~~dg~~~vvEysei~~e-~e~~~------  249 (405)
T 3oc9_A          190 LCKDVDPNMIGYMDLL-----QSEICIKIVKKGFK----EEKVG----VLVKEQERIKVVEYTELTDE-LNKQL------  249 (405)
T ss_dssp             TCCSSCHHHHHHHHHT-----TCSEEEEEEECCST----TCSCC----EEEEETTEEEEECGGGCCTT-TTCBC------
T ss_pred             ccccCCHHHHHHHHHc-----CCCEEEEEEECCCC----CCccc----eEEEECCeeEEEEEeeCCHH-HhhcC------
Confidence            8888888899999985     47777666554310    13555    55543335689999998763 11000      


Q ss_pred             hcCCceEEEeccccceeEeeCHhHHhhhh
Q 007143          221 AENPSISLHNDKQDCYIDICSPEVLSLFT  249 (616)
Q Consensus       221 ~~~~~~~ir~dl~d~gIyIcsp~vl~lf~  249 (616)
                         +.-....+..+.++++|+.++|..+.
T Consensus       250 ---~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          250 ---SNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             ---TTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             ---CCCceeeccceeEeeecCHHHHHHhh
Confidence               00011233445678889998887654

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.09  E-value=1.5e-10  Score=126.18  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCC-------------------CEECCCCEEeceEECCCCEE
Q 007143          328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEG-------------------CTIGSNVLIEGSYIWDNVII  388 (616)
Q Consensus       328 i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~-------------------~~Ig~~~~I~~s~I~~~v~I  388 (616)
                      +++++++.|+. +.|. ++.||++|.||++++|.++++..+                   |.||.+|.|.+++|+++|.|
T Consensus       331 ~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~I  408 (451)
T 1yp2_A          331 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI  408 (451)
T ss_dssp             EEECTTCEEEE-EEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred             eEECCCCEEcc-eEEe-ccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEE
Confidence            55555555554 5554 899999999999999987776656                   99999999999999999999


Q ss_pred             CCCcEEec-eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCE
Q 007143          389 EDGCELRH-VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSK  434 (616)
Q Consensus       389 g~~~~I~~-siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~  434 (616)
                      |++|+|.+ +.+..+.+||++++|+.|+     |+||++++|++|++
T Consensus       409 G~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsv  450 (451)
T 1yp2_A          409 GDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGII  450 (451)
T ss_dssp             CTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCB
T ss_pred             CCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCcc
Confidence            99999965 3444444566666666553     44555555555544

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.08  E-value=2.3e-10  Score=123.62  Aligned_cols=88  Identities=24%  Similarity=0.312  Sum_probs=72.8

Q ss_pred             ECCCcEECCCCEECC-----CCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCE
Q 007143          342 VGSFTVIGYGTKIGS-----NSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVV  416 (616)
Q Consensus       342 I~~~~~Ig~~~~Ig~-----~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~v  416 (616)
                      |...+.+.+.+.|++     ++.+.++.||++|.| .++.|.+++|+++|+||.+|.|.+|+|+++|+||++|+|. +|+
T Consensus       299 i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~-~~~  376 (420)
T 3brk_X          299 IWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS-NVV  376 (420)
T ss_dssp             CCCCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEE-EEE
T ss_pred             eeeccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEe-ceE
Confidence            333444455555554     788889999999999 8999999999999999999999999999999999999998 477


Q ss_pred             ECCCcEECCCCEECC
Q 007143          417 LSFKVVIGERFVVPA  431 (616)
Q Consensus       417 Ig~~v~Ig~~~~v~~  431 (616)
                      ||++|+||+|++|..
T Consensus       377 ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          377 IDHGVVIPEGLIVGE  391 (420)
T ss_dssp             ECTTCEECTTCEESS
T ss_pred             ECCCCEECCCCEEeC
Confidence            888877777776664

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.05  E-value=6.7e-10  Score=106.35  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             ceEECCCCEECCCCEE---eceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLI---EGSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I---~~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|   .+.+||++|.|+.+|.|..             ..++..++||++|+|+++|+|..+|+||+
T Consensus        74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~  153 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGD  153 (185)
T ss_dssp             TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECT
T ss_pred             CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECC
Confidence            4566667777777766   3567888888888888853             33566788888888888888888888888


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       154 ~~vIgagsvV~~  165 (185)
T 2p2o_A          154 NAVIASGAVVTK  165 (185)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECC
Confidence            888888888865

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.05  E-value=6.9e-10  Score=111.86  Aligned_cols=94  Identities=22%  Similarity=0.261  Sum_probs=51.6

Q ss_pred             cEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143          334 IEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK  412 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~  412 (616)
                      +.|++++.||++++|+.+    .+++|+ +++||++|.|+++++|.++...        ....+++||++|+||.+++|.
T Consensus       138 ~~I~p~a~IG~g~~I~~~----~~vvIG~~~~IG~~v~I~~gvtig~~~~~--------~~~~~~~IGd~v~IGaga~Il  205 (267)
T 1ssq_A          138 VDIHPAAKIGHGIMFDHA----TGIVVGETSVIENDVSILQGVTLGGTGKE--------SGDRHPKVREGVMIGAGAKIL  205 (267)
T ss_dssp             CEECTTCEECSSCEESSC----TTCEECTTCEECTTCEECTTCEEECCSSS--------CSSCSCEECTTCEECTTCEEE
T ss_pred             eEeCCCCEECCCEEECCC----CceEECCeeEECCCCEEcCCcEECCCccc--------CCCCCeEECCCeEEcCCCEEe
Confidence            444444444444444431    123332 3456666666666666543110        011345667777777777777


Q ss_pred             CCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          413 PGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       413 ~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      +|++||++|+||+|++    ||+++++...|
T Consensus       206 ~gv~IG~~a~IGagsvV~~dVp~~~~v~G~P  236 (267)
T 1ssq_A          206 GNIEVGKYAKIGANSVVLNPVPEYATAAGVP  236 (267)
T ss_dssp             SSCEECTTCEECTTCEECSCBCTTCEEETTT
T ss_pred             CCcEECCCCEECCCCEEccCCCCCCEEEecC
Confidence            7777777777777776    45666665543

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.04  E-value=7e-10  Score=105.93  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   ..+||++|.|+.+|.|..             ..++.+++||++|+|+.+|+|..+|+||+
T Consensus        72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~  151 (182)
T 1ocx_A           72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD  151 (182)
T ss_dssp             TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECC
Confidence            45677777777777774   578999999999999853             34577899999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|..
T Consensus       152 ~~vIgagsvV~~  163 (182)
T 1ocx_A          152 NVVVASGAVVTK  163 (182)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECC
Confidence            999999999975

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.04  E-value=9.6e-10  Score=112.97  Aligned_cols=45  Identities=29%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             eceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      .+++||++|+||++|+|.+|++||++|+||+|++    ||+++++...|
T Consensus       250 ~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~dVp~~svv~GnP  298 (310)
T 3f1x_A          250 RHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTENVPAGSRIVQRK  298 (310)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSCBCTTCEECCCC
T ss_pred             CCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCccCCCcEEECCC
Confidence            3456777788888888777777777777777776    46777776654

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.03  E-value=1.6e-09  Score=103.97  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             ceEECCCCEECCCCEEec---eEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIEG---SYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~~---s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.+   ..||++|.|+.+|.|.             +..++..++||++|+|+.+|+|.++|+||+
T Consensus        76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  155 (188)
T 3srt_A           76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD  155 (188)
T ss_dssp             TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred             CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence            456666666666666642   3677777777777773             345567778888888888888888888888


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|+.
T Consensus       156 ~~vIgagsvV~~  167 (188)
T 3srt_A          156 NVVIGAGSVVTK  167 (188)
T ss_dssp             SEEECTTCEECS
T ss_pred             CCEECCCCEECc
Confidence            888888887775

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.01  E-value=9.9e-10  Score=111.71  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             cCCEE--EEeCceecchhHHHHHHHHHHhh
Q 007143          130 HGDFV--LISGDTVSNMLLTQALQEHKERK  157 (616)
Q Consensus       130 ~~dfL--lv~gD~i~~~~l~~~l~~h~~~~  157 (616)
                      .+++|  ++++|++...+|.++|.+|..++
T Consensus        39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k   68 (289)
T 1t3d_A           39 CEPMLASFYHATLLKHENLGSALSYMLANK   68 (289)
T ss_dssp             HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            45699  99999999999999999999875

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.01  E-value=3.1e-10  Score=109.94  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=76.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.|||||+|.|+||+     .||+|+|++|+|||+|+++.|..+ +++|+|++++...   +++.        +  +.+
T Consensus        14 ~~~~iILA~G~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~--------~--~~~   74 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRFG-----EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK---FSFL--------N--APV   74 (201)
T ss_dssp             CCEEEEEEESSCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG--------T--CCE
T ss_pred             CceEEEECCCCCccCC-----CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC--------C--ceE
Confidence            3689999999999998     499999999999999999999998 9999999987643   2221        1  234


Q ss_pred             EeC-CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHH-HH
Q 007143          108 IES-HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQ-AL  150 (616)
Q Consensus       108 i~~-~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~-~l  150 (616)
                      +.. ....|++++++....  .+..+ |++++||+  +....+.. ++
T Consensus        75 v~~~~~~~g~~~~i~~al~--~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           75 VLDEFEESASIIGLYTALK--HAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EECCCSSCCHHHHHHHHHH--HCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             EecCCCCCCcHHHHHHHHH--HcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            443 345688888886432  34444 99999999  34445666 55

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.01  E-value=1e-09  Score=111.45  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=25.2

Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP  430 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~  430 (616)
                      +++||++|+||++++|.+|++||++|+||+|++|.
T Consensus       216 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~  250 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVL  250 (287)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Confidence            45667777777777777777777777777777643

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.01  E-value=9.4e-10  Score=113.07  Aligned_cols=39  Identities=15%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +..+++||++|+|++||+|..+++||++++|++|++|..
T Consensus       248 ~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~  286 (310)
T 3f1x_A          248 IPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTE  286 (310)
T ss_dssp             -CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECS
T ss_pred             CCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECC
Confidence            456778888888888888888888888888888888874

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.00  E-value=1.4e-09  Score=110.50  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             CcEECCCCEECCCcEEC--CCCEECCCCEEeceEECCCCEECCCCEEec
Q 007143          333 EIEQSRSAQVGSFTVIG--YGTKIGSNSKISDSVIGEGCTIGSNVLIEG  379 (616)
Q Consensus       333 ~v~i~~~~~I~~~~~Ig--~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~  379 (616)
                      ++.|++++.||++++|+  .++.||++     ++||++|.|+++|+|.+
T Consensus       164 gi~I~p~a~IG~~v~I~hg~gvvIG~~-----~~IGd~v~I~~gvtIg~  207 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHATGLVVGET-----AVVEDNVSILHGVTLGG  207 (287)
T ss_dssp             CCEECTTCEECSSCEEESCTTCEECTT-----CEECSSCEEETTCEEEC
T ss_pred             CeEECCCCEECCCeEEccCCCeEECCC-----eEECCCCEEcCCCEEcC
Confidence            34444444444444444  33333333     35555555555555543

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=98.99  E-value=3.6e-09  Score=115.58  Aligned_cols=196  Identities=9%  Similarity=0.128  Sum_probs=125.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------C------CcEEEEEcCCcHHHHH
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------G------VAEVFVFCCAHSKQVI   89 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------G------v~eI~vv~~~~~~~i~   89 (616)
                      .++.+||||+|.||||+   ...||+|+||+   |+|+|+++++.|.+.        |      +..+++...+..+.++
T Consensus       102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~  178 (486)
T 2yqc_A          102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATE  178 (486)
T ss_dssp             TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHH
T ss_pred             CCeEEEEEcCCccccCC---CCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHH
Confidence            46899999999999985   58899999999   999999999999987        6      6666556666688899


Q ss_pred             HHHHhcCCCCCCCcEEEEEeC--------C--------------CccCHHHHHHHHHhccccc-----C-C-EEEEeCce
Q 007143           90 DYLENSEWFSQPNFTVKTIES--------H--------------NIISAGDALRLIYEQNVIH-----G-D-FVLISGDT  140 (616)
Q Consensus        90 ~~l~~~~~~~~~~~~i~~i~~--------~--------------~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~  140 (616)
                      +|+++..|.....-.|.++.+        +              .+.|.|++++.+....++.     + . +.+...|.
T Consensus       179 ~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN  258 (486)
T 2yqc_A          179 SFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDN  258 (486)
T ss_dssp             HHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTB
T ss_pred             HHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCC
Confidence            999875443211112332221        1              3569999988775444331     2 3 44555565


Q ss_pred             ec--chhHHHHHHHHHHhhccCCCceEEEEEecC-CCCCCCcccccCCCceEEEEe--CCCCeEEEeeecCCCCCcceEe
Q 007143          141 VS--NMLLTQALQEHKERKKKDNNAVMTMIIKKS-KPSPITHQSRLGTDELFMAID--PNTKQLLYYEDKADHSKGTICL  215 (616)
Q Consensus       141 i~--~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~-~~~~~~~~~r~~~~~~vv~id--~~~~rvl~~~e~p~~~~~~~~l  215 (616)
                      +.  ..| -.++..|..+     ++.+++.+.+. .+.     .+.|    ++...  ....+|+.|.++|....     
T Consensus       259 ~l~~~~D-p~~lg~~~~~-----~~~~~~~vv~k~~~~-----e~~G----vl~~~~~dg~~~vvEy~E~~~~~~-----  318 (486)
T 2yqc_A          259 CLVKVAD-PIFIGFAIAK-----KFDLATKVVRKRDAN-----ESVG----LIVLDQDNQKPCVIEYSEISQELA-----  318 (486)
T ss_dssp             TTCCTTC-HHHHHHHHHH-----TCSEEEEEEECCSTT-----CCCC----EEEEETTTTEEEEECGGGSCHHHH-----
T ss_pred             ceeeccC-HHHHHHHHHc-----CCCEEEEEEEcCCCC-----Ccee----EEEEEecCCCEEEEEEecCCHHHh-----
Confidence            32  233 3467778775     47777766543 221     2445    55543  22335888888764100     


Q ss_pred             ehHhhhcCCc--eEEEeccccceeEeeCHhHHhh-hh
Q 007143          216 DKMLLAENPS--ISLHNDKQDCYIDICSPEVLSL-FT  249 (616)
Q Consensus       216 ~~~l~~~~~~--~~ir~dl~d~gIyIcsp~vl~l-f~  249 (616)
                        +.+  .+.  -.+.+...++++|+++.+++.. +.
T Consensus       319 --~~~--~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~  351 (486)
T 2yqc_A          319 --NKK--DPQDSSKLFLRAANIVNHYYSVEFLNKMIP  351 (486)
T ss_dssp             --HCE--ETTEEEEESSCEEEEEEEEEEHHHHHHHHH
T ss_pred             --hcc--cccccccccccceeEEEEEEeHHHHHHHHH
Confidence              000  011  1234567788999999999876 44

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=98.98  E-value=4.6e-09  Score=104.10  Aligned_cols=112  Identities=16%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.|||||+|.|+||+.   ..||+|+|++|+|||+|+++.+..++ +.+|+|++++.. +.+++++..         .+
T Consensus         7 ~~~aIIlAaG~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------~v   74 (231)
T 3q80_A            7 EVVAIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------RA   74 (231)
T ss_dssp             CEEEEEECCCCCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---------GC
T ss_pred             ceEEEEECCCCCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---------Ce
Confidence            37899999999999984   67999999999999999999999984 999999998764 567766643         13


Q ss_pred             EEEeCCCccCHHHHHHHHHhccccc----CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIH----GD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~----~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      .++....  +..++++...  ..+.    .+ +|++.||.  +....+..+++.+++
T Consensus        75 ~~v~gg~--~r~~sv~~gl--~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~  127 (231)
T 3q80_A           75 MIVAGGS--NRTDTVNLAL--TVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD  127 (231)
T ss_dssp             EEEECCS--SHHHHHHHHH--GGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred             EEEcCCC--chHHHHHHHH--HHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence            3443222  2234444322  2232    34 78888998  666789999998765

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.96  E-value=9.9e-10  Score=107.48  Aligned_cols=77  Identities=27%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             ceEECCCCEECCCCEEece----EECCCCEEC--------------CCcEE-eceEECCCcEECCCCEECCCCEECCCcE
Q 007143          362 DSVIGEGCTIGSNVLIEGS----YIWDNVIIE--------------DGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVV  422 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~~s----~I~~~v~Ig--------------~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~  422 (616)
                      ++.||++|.|+++|+|...    ..++++...              .++.+ .+++||++|+||.+|+|.+|+.||++|+
T Consensus        58 ~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~i  137 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAI  137 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             CcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCE
Confidence            6678888888888877321    333322222              12212 3456677777777777777777777777


Q ss_pred             ECCCCEE----CCCCEEccc
Q 007143          423 IGERFVV----PAHSKVSLL  438 (616)
Q Consensus       423 Ig~~~~v----~~~~~v~~~  438 (616)
                      ||++++|    |+++++...
T Consensus       138 IgagsvV~~dVp~~~vv~G~  157 (212)
T 3eev_A          138 IASRSVVTKDVAPYEVVGSN  157 (212)
T ss_dssp             ECTTCEECSCBCTTEEEETT
T ss_pred             ECCCCEEccccCCCcEEEec
Confidence            7777764    455555443

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.95  E-value=1.5e-09  Score=114.10  Aligned_cols=98  Identities=15%  Similarity=0.259  Sum_probs=72.9

Q ss_pred             CCCEECCCcEECCCCEECCCCEEec--eEECCCCE-ECCCCEEeceEECCCCEECCCcEEec-eE----ECCC----cEE
Q 007143          338 RSAQVGSFTVIGYGTKIGSNSKISD--SVIGEGCT-IGSNVLIEGSYIWDNVIIEDGCELRH-VI----VCDG----VIM  405 (616)
Q Consensus       338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~--s~IG~~~~-Ig~~~~I~~s~I~~~v~Ig~~~~I~~-si----Ig~~----v~I  405 (616)
                      .+++|++++.|+.++.||+++.|.+  ++|+.+|. ||+ |.|.. .|+++++||++|.|.. +.    +..+    ++|
T Consensus       216 ~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~-~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvI  293 (387)
T 2rij_A          216 DNTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG-RISSSAIVGEGSDVGGGASILGVLSGTSGNAISV  293 (387)
T ss_dssp             TTCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS-EECTTCEECTTCEECTTCEECCBCSSTTCCBCEE
T ss_pred             CCEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee-EECCCCEECCCCEECCCceEcceecCCCccCeEE
Confidence            3677877788888888888887753  77888887 777 77764 7888888888888853 43    3333    778


Q ss_pred             CCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143          406 KAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ  439 (616)
Q Consensus       406 g~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~  439 (616)
                      |++|+|+.+|+  .|++||++++|++|++|....
T Consensus       294 Gdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv  325 (387)
T 2rij_A          294 GKACLLGANSV--TGIPLGDNCIVDAGIAVLEGT  325 (387)
T ss_dssp             CTTCEECTTCE--ECSCBCTTCEECTTCEECTTC
T ss_pred             eCCCEECCCCc--CCcEECCCCEECCCCEECCCc
Confidence            88888887777  778888888888888887644

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=98.94  E-value=4.3e-09  Score=102.59  Aligned_cols=107  Identities=14%  Similarity=0.185  Sum_probs=75.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      |.|||||+|.|+||+.     ||+|+|++|+|||+|+++.|..+   +|+|++++ .+++..+...  +    ++  .++
T Consensus         1 m~aiILAgG~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~-~~~~~~~~~~--~----~~--~~v   63 (208)
T 3ngw_A            1 MKVAVLVGGVGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRD-EKQAEKLSSR--Y----EA--EFI   63 (208)
T ss_dssp             CEEEEECCCCCTTTTS-----CGGGCEETTEEHHHHHHHHHTTS---EEEEECSS-HHHHHHHHTT--S----CS--CEE
T ss_pred             CEEEEECCCchhhCCC-----CCcccEECCeeHHHHHHHHhcCC---CEEEEECC-HHHHHHHHHh--c----CC--eEE
Confidence            6899999999999984     99999999999999999999987   89888874 4555544322  1    22  234


Q ss_pred             eCC-CccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHHH
Q 007143          109 ESH-NIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       109 ~~~-~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ... ...|...+++.....  + .+.+++.||+  +....+..+++.+.+
T Consensus        64 ~d~~~~~G~~~si~~gl~~--~-~~~vv~~~D~P~i~~~~i~~l~~~~~~  110 (208)
T 3ngw_A           64 WDLHKGVGSIAGIHAALRH--F-GSCVVAAIDMPFVKPEVLEHLYKEGEK  110 (208)
T ss_dssp             CCTTCCCSHHHHHHHHHHH--H-SSEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred             ecCCCCCChHHHHHHHHHH--c-CCCEEEECCccCCCHHHHHHHHHHhhc
Confidence            322 223544666644322  3 5533999999  455678888887764

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=98.92  E-value=3.4e-09  Score=103.76  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=14.4

Q ss_pred             cEECCCCEECCCCEE----eceEECCCCEECCCCEEe
Q 007143          346 TVIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIE  378 (616)
Q Consensus       346 ~~Ig~~~~Ig~~~~I----~~s~IG~~~~Ig~~~~I~  378 (616)
                      +.||++|.|++.+.+    .+++||++|.||++|+|.
T Consensus        80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred             EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence            444444444442222    234444444444444443

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.92  E-value=1.5e-09  Score=106.65  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             CCEECCCCEEe-ceEECCCCEECCCCEEe-----ceEEC---CCCEECCC----------cE-EeceEECCCcEECCCCE
Q 007143          351 GTKIGSNSKIS-DSVIGEGCTIGSNVLIE-----GSYIW---DNVIIEDG----------CE-LRHVIVCDGVIMKAGAV  410 (616)
Q Consensus       351 ~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-----~s~I~---~~v~Ig~~----------~~-I~~siIg~~v~Ig~~~~  410 (616)
                      ++.|.+++.|+ .++||++|.|+++|+|.     +.+++   ..+.++.+          +. ..+++||++|+||.+++
T Consensus        53 ~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~  132 (219)
T 4e8l_A           53 DQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVT  132 (219)
T ss_dssp             GGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCE
T ss_pred             ceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCE
Confidence            45666666554 67899999999999884     22222   11122222          22 23567777777777777


Q ss_pred             ECCCCEECCCcEECCCCEE
Q 007143          411 LKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       411 I~~g~vIg~~v~Ig~~~~v  429 (616)
                      |.+|+.||++++||++++|
T Consensus       133 I~~gv~IG~~~~IgagsvV  151 (219)
T 4e8l_A          133 IMPGVKIGDGAIIAAEAVV  151 (219)
T ss_dssp             ECTTCEECTTCEECTTCEE
T ss_pred             EcCCCEECCCCEECCCCEE
Confidence            7777777777777777664

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=98.92  E-value=2.2e-09  Score=113.56  Aligned_cols=110  Identities=19%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHH-CCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~-~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      ++.|||||+|.|+||+.   ..||+|+|++|+|||+|+++.|.. .++++|+|+++ ..+.+++++..          +.
T Consensus         3 ki~aIILAaG~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~~----------v~   68 (371)
T 1w55_A            3 EMSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTKN----------YE   68 (371)
T ss_dssp             CEEEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCSS----------SE
T ss_pred             ccEEEEECCCCCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhCC----------CE
Confidence            47899999999999983   579999999999999999999998 58999999998 65656554321          23


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      ++..  ..+...+++...  ..+..+ +|++.||+  +....+..+++.|++
T Consensus        69 ~v~~--g~g~~~sv~~aL--~~l~~d~vlv~~~D~Pli~~~~i~~li~~~~~  116 (371)
T 1w55_A           69 FIEG--GDTRAESLKKAL--ELIDSEFVMVSDVARVLVSKNLFDRLIENLDK  116 (371)
T ss_dssp             EEEC--CSSHHHHHHHHH--TTCCSSEEEEEETTCTTCCHHHHHHHHTTGGG
T ss_pred             EEeC--CCChHHHHHHHH--HhcCCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence            3422  234556666433  334444 89999998  456688898887754

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=98.91  E-value=3.3e-09  Score=104.35  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=37.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      +..+++||++|+|+.+|+|.++|+||++++|+++++|+..
T Consensus       116 ~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d  155 (220)
T 4hur_A          116 LKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN  155 (220)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc
Confidence            5678999999999999999999999999999999999863

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=98.91  E-value=1e-10  Score=112.21  Aligned_cols=47  Identities=38%  Similarity=0.403  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCcEEEeecccccccCCChHHhhccc
Q 007143          563 SVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLE  609 (616)
Q Consensus       563 ~~~F~~e~~~~l~r~~~~~~~~d~~~lEin~lr~a~n~~~~~v~~~~  609 (616)
                      ...|++||+++|+||+++||++||++||||+||||||++.++|+|+.
T Consensus        19 ~~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v   65 (189)
T 1paq_A           19 DEDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIAT   65 (189)
T ss_dssp             --CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            45799999999999999999999999999999999999999999975

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.87  E-value=1.1e-09  Score=106.85  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             CCcEECCCCEECCC--cEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---eE-----ECCCCEECCCc--------
Q 007143          332 LEIEQSRSAQVGSF--TVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---SY-----IWDNVIIEDGC--------  392 (616)
Q Consensus       332 ~~v~i~~~~~I~~~--~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---s~-----I~~~v~Ig~~~--------  392 (616)
                      +++.|++.+.|+++  +.+ .++.|..++.++ .++||++|.||++|+|..   ..     ++.++.++.++        
T Consensus        28 ~~i~IG~~~~I~~~~~~~i-~~~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~  106 (209)
T 1mr7_A           28 ENVEVGEYSYYDSKNGETF-DKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLD  106 (209)
T ss_dssp             TTEEECTTCEEECSSSCCG-GGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGG
T ss_pred             CCeEECCCcEEcCCCceEE-eceEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccc
Confidence            45555555555543  334 456666666664 578999999999998731   11     11222333332        


Q ss_pred             --E-EeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          393 --E-LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       393 --~-I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                        . ..+++||++|+||.+++|.+|++||++++||++++|
T Consensus       107 ~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V  146 (209)
T 1mr7_A          107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVV  146 (209)
T ss_dssp             GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEE
Confidence              1 134566666666666666666666666666666653

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.81  E-value=6.3e-09  Score=101.60  Aligned_cols=69  Identities=26%  Similarity=0.384  Sum_probs=44.5

Q ss_pred             eceEECCCCEECCCCEEe--ce--EECCC---------------CEECCCcEEe-ceEECCCcEECCCCEECCCCEECCC
Q 007143          361 SDSVIGEGCTIGSNVLIE--GS--YIWDN---------------VIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       361 ~~s~IG~~~~Ig~~~~I~--~s--~I~~~---------------v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      ...+||++|.|+++|+|.  +.  ...++               +.++.++.+. .++||++|+||.+|+|.+|++||++
T Consensus        55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~  134 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHG  134 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCC
Confidence            567888888888888873  11  22221               2334444443 4667777777777777777777777


Q ss_pred             cEECCCCEE
Q 007143          421 VVIGERFVV  429 (616)
Q Consensus       421 v~Ig~~~~v  429 (616)
                      |+||++++|
T Consensus       135 ~~IgagsvV  143 (212)
T 1xat_A          135 AIIGSRALV  143 (212)
T ss_dssp             CEECTTCEE
T ss_pred             CEECCCCEE
Confidence            777777764

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.79  E-value=1.7e-08  Score=102.68  Aligned_cols=83  Identities=24%  Similarity=0.318  Sum_probs=44.5

Q ss_pred             cEECCCCEECCCcEECC--CCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007143          334 IEQSRSAQVGSFTVIGY--GTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL  411 (616)
Q Consensus       334 v~i~~~~~I~~~~~Ig~--~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I  411 (616)
                      +.|++++.|+++++|+.  ++.||+     +++||++|.|+.+|+|.++.    ...+    ..+++||++|+||++++|
T Consensus       158 ~~I~p~a~IG~gv~I~~g~gvvIG~-----~~~IG~~v~I~~gvtLg~~~----~~~~----~~~~~IGd~v~IGaga~I  224 (289)
T 1t3d_A          158 VDIHPAAKIGRGIMLDHATGIVVGE-----TAVIENDVSILQSVTLGGTG----KSGG----DRHPKIREGVMIGAGAKI  224 (289)
T ss_dssp             CEECTTCEECSSCEECSCTTCEECT-----TCEECSSCEECTTCEEECCS----SSCS----SCSCEECTTCEECTTCEE
T ss_pred             eEEcCCCEEcCCEEECCCCceEECC-----CcEECCCCEEcCCcEECCCc----cccC----CCCeEECCCeEECCCCEE
Confidence            44444444444444442  233332     34556666666665554321    1111    234566777777777777


Q ss_pred             CCCCEECCCcEECCCCEE
Q 007143          412 KPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       412 ~~g~vIg~~v~Ig~~~~v  429 (616)
                      ..+++||++|+||+|++|
T Consensus       225 lggv~IG~~a~IGagsvV  242 (289)
T 1t3d_A          225 LGNIEVGRGAKIGAGSVV  242 (289)
T ss_dssp             ESSCEECTTCEECTTCEE
T ss_pred             ecCcEECCCCEECCCCEE
Confidence            766777777777766654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.74  E-value=2.7e-08  Score=100.18  Aligned_cols=28  Identities=14%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             cCCEE--EEeCceecchhHHHHHHHHHHhh
Q 007143          130 HGDFV--LISGDTVSNMLLTQALQEHKERK  157 (616)
Q Consensus       130 ~~dfL--lv~gD~i~~~~l~~~l~~h~~~~  157 (616)
                      .+++|  ++++|++...+|.++|.+|..++
T Consensus        19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k   48 (267)
T 1ssq_A           19 NEPMLASFFHSTILKHQNLGGALSYLLANK   48 (267)
T ss_dssp             HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            35588  89999999999999999999875

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.65  E-value=2.8e-08  Score=97.47  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ..+++||++|+|+.+++|..+++||++++|+++++|..
T Consensus       116 ~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  153 (219)
T 4e8l_A          116 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  153 (219)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            34688999999999999999999999999999999875

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.65  E-value=4.7e-08  Score=95.48  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=36.8

Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .++.+++||++|+|+.+|+|.++|+||++++|+++++|..
T Consensus       107 ~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~  146 (212)
T 3eev_A          107 TRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTK  146 (212)
T ss_dssp             CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            3566899999999999999999999999999999999985

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.49  E-value=3.5e-07  Score=89.16  Aligned_cols=39  Identities=8%  Similarity=0.100  Sum_probs=24.5

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +...++||++|+|+.+|+|.++|+||++++|+++++|..
T Consensus       107 ~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          107 PAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             CCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            444566666666666666666666666666666666653

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.47  E-value=8.5e-08  Score=93.45  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .+++||++|+|+.+++|..+++||++++|+++++|..
T Consensus       112 ~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~  148 (209)
T 1mr7_A          112 GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (209)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            4577888888888888888888888888888887764

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=97.63  E-value=0.0018  Score=70.35  Aligned_cols=71  Identities=13%  Similarity=0.188  Sum_probs=57.1

Q ss_pred             cCCCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CC-cEEEEEcCCc-HHHHHHHHHhcCC
Q 007143           25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GV-AEVFVFCCAH-SKQVIDYLENSEW   97 (616)
Q Consensus        25 ~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv-~eI~vv~~~~-~~~i~~~l~~~~~   97 (616)
                      ...++.+|+||+|.||||+-   ..||.++|+. ++++++++++.+...    |+ --.+|.++.. .+.+++|+++..|
T Consensus       124 ~l~kvavvlLaGGlGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~  200 (528)
T 3r3i_A          124 VLNKLVVVKLNGGLGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH  200 (528)
T ss_dssp             TCTTEEEEEECCCBCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred             hcCceEEEEeCCCCccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence            35678899999999999974   7799999997 799999999998886    43 2466777754 6788899987655


Q ss_pred             C
Q 007143           98 F   98 (616)
Q Consensus        98 ~   98 (616)
                      .
T Consensus       201 f  201 (528)
T 3r3i_A          201 C  201 (528)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=96.66  E-value=0.0035  Score=60.41  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             CCeEEEEEe--CCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEE-EEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143           27 QPLQAILLA--DSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEV-FVFCCAHSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        27 ~~l~aVILA--~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI-~vv~~~~~~~i~~~l~~~~~~~~~~~  103 (616)
                      +.|.+||++  +.--||+.|   .+.+......++|||+|+++.+..+++..+ ++++++..  +.      .|.   + 
T Consensus         2 ~~~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~------~~~---~-   66 (211)
T 2i5e_A            2 NAMRAVIPYKKAGAKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--LE------EMT---E-   66 (211)
T ss_dssp             CCCEEEEECCCTTTTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--CS------SCC---S-
T ss_pred             CceEEEEEeCCCCCccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--HH------hhc---C-
Confidence            347899999  445567664   222333336679999999999999999999 88887542  11      111   2 


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHH
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQ  151 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~  151 (616)
                       +.++.+.  .|++.+|+......  .+.++++.||+  +....+..+++
T Consensus        67 -~~~v~~~--~gl~~sl~~a~~~~--~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           67 -ARVLLDE--KDLNEALNRYLKEA--EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             -SEEEECC--SCHHHHHHHHHHHC--CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             -CEEEECC--CCHHHHHHHHHHhc--CCCEEEEcCCcCCCCHHHHHHHHc
Confidence             3445544  78999999764332  44599999999  66667787765

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=95.96  E-value=0.048  Score=58.76  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCccccee-CCeehHHHHHHHHHHC----CC-cEEEEEcCCc-HHHHHHHHHhcCC
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPL-VNVPMINYTLAWLEAA----GV-AEVFVFCCAH-SKQVIDYLENSEW   97 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi-~g~PlI~y~Le~L~~~----Gv-~eI~vv~~~~-~~~i~~~l~~~~~   97 (616)
                      ++-+|+||+|.||||+-   ..||.++|+ .++++++..++.+...    |+ --.+|.++.. .+.+++++++..|
T Consensus        76 kvavvlLaGGlGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~  149 (484)
T 3gue_A           76 QAVVLKLNGGLGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPT  149 (484)
T ss_dssp             TEEEEEEECCCCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHH
T ss_pred             hcEEEEEcCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCcc
Confidence            57889999999999974   679999999 6799999999998874    33 2567888754 6788899987543

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=95.26  E-value=0.098  Score=57.92  Aligned_cols=64  Identities=19%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC-CCc-EEEEEcCCc-HHHHHHHHHh
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA-GVA-EVFVFCCAH-SKQVIDYLEN   94 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~-Gv~-eI~vv~~~~-~~~i~~~l~~   94 (616)
                      ++.+|+||+|.||||+-   ..||.++|+.   +++++++.++.+.+. |+. -.+|.++.. .+.+++++++
T Consensus       114 kvavvllaGGlGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~  183 (630)
T 3ogz_A          114 KTVFVLVAGGLGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE  183 (630)
T ss_dssp             GEEEEEECCCEEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH
T ss_pred             hceEEEecCCcccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH
Confidence            57889999999999875   6799999997   899999999999864 432 467777754 6788889887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	616
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	2e-16
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	2e-15
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	3e-14
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	2e-12
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	1e-10
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	1e-09
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-09
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	4e-08
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	2e-07
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	7e-07
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	3e-06
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	7e-05
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	1e-08
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	4e-08
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	3e-04
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	8e-04
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	6e-08
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	2e-07
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	4e-07
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	4e-07
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	1e-06
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	1e-05
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	2e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	0.001
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	3e-06
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	1e-04
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	1e-04
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.004
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	0.004

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 78.1 bits (191), Expect = 2e-16
 Identities = 44/307 (14%), Positives = 105/307 (34%), Gaps = 35/307 (11%)

Query: 20  DPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAAGVAEVF 78
           DPD  A + +  I+L     T+  P+T +R K  +PL  N  +I+  ++    + +++++
Sbjct: 5   DPD--ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIY 62

Query: 79  VFCCAHSKQVIDYL---------ENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129
           V    +S  +  +L                      +    +     G A  +     + 
Sbjct: 63  VLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLF 122

Query: 130 ----HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185
                 ++++++GD +  M          E+  + +      I   + P      +  G 
Sbjct: 123 EEHTVLEYLILAGDHLYRM--------DYEKFIQAHRETDADITVAALPMDEKRATAFGL 174

Query: 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEV 244
               M ID   + + + E         + +D  +L  +              I + S +V
Sbjct: 175 ----MKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDV 230

Query: 245 L-SLFTDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302
           + +L  D F   +    F   ++     +G ++  +  +  Y   I    ++   +  I 
Sbjct: 231 MLNLLRDKFPGAN---DFGSEVIPGATSLGMRVQAYL-YDGYWEDIGTIEAFYNANLGIT 286

Query: 303 QRWTYPY 309
           ++    +
Sbjct: 287 KKPVPDF 293

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 2/129 (1%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  P TL   K LLP+ + PMI Y L+ L  AG+ E+ +          
Sbjct: 3   KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 62

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQA 149
             L      S     ++     +      A  +           +++  +        + 
Sbjct: 63  QQLLG--DGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHEL 120

Query: 150 LQEHKERKK 158
           L    +R+ 
Sbjct: 121 LGSASQRQT 129

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  PIT    K LLP+ + PMI Y L+ L  AG+ E+ +      K   
Sbjct: 3   KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYF 62

Query: 90  DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQA 149
             L      S+    ++  E  +      A  +           +++  +       +  
Sbjct: 63  QRLLGDG--SEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPK 120

Query: 150 LQEHKERKKK 159
           L+    R + 
Sbjct: 121 LRHVAARTEG 130

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
          +A++LA    T+    T+ +PK ++ +   P++ + +      G+ +  + C      + 
Sbjct: 4  KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63

Query: 90 DYLENSEWF 98
          +Y  N    
Sbjct: 64 EYFANYFLH 72

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 30  QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVI 89
           + I+LA    T+  PIT    K LLP+ + PMI Y L+ L  AG+ ++ +        + 
Sbjct: 5   KGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64

Query: 90  -DYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
            D L +    SQ                 DA  +  +  +      L+ GD   N+    
Sbjct: 65  RDLLGDG---SQFGVRFSYRVQEEPRGIADAFIVG-KDFIGDSKVALVLGD---NVFYGH 117

Query: 149 ALQEHKERKKKDNNAVMTMIIKKSKPS 175
              E   R     +  +        P 
Sbjct: 118 RFSEILRRAASLEDGAVIFGYYVRDPR 144

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 26/210 (12%), Positives = 60/210 (28%), Gaps = 9/210 (4%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVID 90
           AI+LA    T+ +    + PKVL  +  + M+ +    + A    +        ++ V +
Sbjct: 4   AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60

Query: 91  YLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQAL 150
            L     F   +  + T  +  +         I E    H   +      ++   L   +
Sbjct: 61  VLAGQTEFVTQSEQLGTGHAVMMT------EPILEGLSGHTLVIAGDTPLITGESLKNLI 114

Query: 151 QEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSK 210
             H   K                   + + +      +      + ++ +   +   +  
Sbjct: 115 DFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVF 174

Query: 211 GTICLDKMLLAENPSISLHNDKQDCYIDIC 240
               L + L   N + +         I I 
Sbjct: 175 DNERLFEALKNINTNNAQGEYYITDVIGIF 204

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 348 IGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI 404
            G   +I +N  I  +V +G    IG+  +I+ S I D+  I     +    +     
Sbjct: 17  HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACT 74

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 346 TVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVII 388
             +G+  KIG+   I +SVIG+ C I    ++E + +     I
Sbjct: 33  VTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 75

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 9/60 (15%), Positives = 22/60 (36%)

Query: 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392
            +   R  ++ +  +I     +G   KI    + +   IG +  I    + ++  +   C
Sbjct: 14  TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAAC 73

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 353 KIGSNSKISDSVIGEG-CTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411
             G + +I  +VI EG  T+G  V I    +  N +I D CE+    V +   + A   +
Sbjct: 16  THGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 75

Query: 412 KP 413
            P
Sbjct: 76  GP 77

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 362 DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV 421
               G    I +NV+IEG     NV +    ++    V    ++     + P  V+    
Sbjct: 14  TLTHGRDVEIDTNVIIEG-----NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE-DA 67

Query: 422 VIGERFVV 429
            +     +
Sbjct: 68  NLAAACTI 75

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 342 VGSFTVIGYGTKIGSNSKISDSVIGEGCTIG 372
           V   +VIG   +I   + + D+ +   CTIG
Sbjct: 46  VIKNSVIGDDCEISPYTVVEDANLAAACTIG 76

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           ++AI+LA    T+ RP+T   PK L+ +   P+I Y + +L+  G+    +    + K+ 
Sbjct: 4   VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGI-NDIIIIVGYLKEQ 62

Query: 89  IDYLENSEWFSQPNF 103
            DYL+          
Sbjct: 63  FDYLKEKYGVRLVFN 77

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394
            +SA V    ++  G  IG+N+ I    ++G    IG   +++    +  +  I    E+
Sbjct: 3   DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEI 62

Query: 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
                   V        +P  V           V      V
Sbjct: 63  YQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTV 103

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVV 422
           +I +   +    ++E G+ I  N  I   C     IV   V +  G VLK  VV++    
Sbjct: 1   MIDKSAFVHPTAIVEEGASIGANAHIGPFC-----IVGPHVEIGEGTVLKSHVVVNGHTK 55

Query: 423 IGERFVVPAHSK 434
           IG    +   + 
Sbjct: 56  IGRDNEIYQFAS 67

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 340 AQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI--EGSYIWDNVIIEDGCELRH 396
           A +G F ++G   +IG  + + S  V+     IG +  I    S    N  ++   E   
Sbjct: 24  AHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR 83

Query: 397 VIVCDGVIMKAGAVLKPGVVLSFKV-VIGERFVVPAHS 433
           V + D   ++    +  G V    +  +G   ++  ++
Sbjct: 84  VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINA 121

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 566 FEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFT 601
           FEKE  AT  RA+E N  +D  +LE+N+LR S++ T
Sbjct: 2   FEKEGIATVERAMENNHDLDTALLELNTLRMSMNVT 37

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 22/208 (10%), Positives = 54/208 (25%), Gaps = 11/208 (5%)

Query: 29  LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV 88
           +  ++LA    T+      + PKVL  L    M+ + +      G A V +        +
Sbjct: 3   MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59

Query: 89  IDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQ 148
                     +  +  +  +     +  G A++          D +++ GD     + T 
Sbjct: 60  --------KQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETL 111

Query: 149 ALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADH 208
                 + +       + +              ++             +Q+         
Sbjct: 112 QRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILI 171

Query: 209 SKGTICLDKMLLAENPSISLHNDKQDCY 236
           + G      +    N +        D  
Sbjct: 172 ANGADMKRWLAKLTNNNAQGEYYITDII 199

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV 397
           +A +     I  G +IG    I     + EG  + +NV ++G       + ++       
Sbjct: 6   TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQG----HTFVGKNTEIFPFA 61

Query: 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427
           ++               +++    +I E  
Sbjct: 62  VLGTQPQDLKYKGEYSELIIGEDNLIREFC 91

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR-HV 397
           +++    +I    +I    +     IGE C IG  V + EG  + +NV ++    +  + 
Sbjct: 1   SKIAKTAIISPKAEINKGVE-----IGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNT 55

Query: 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432
            +    ++              +++IGE  ++   
Sbjct: 56  EIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREF 90

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMKAGAV 410
           +K+  ++ ++DSVIGEGC I +   I  S +     I +G  +   +++           
Sbjct: 5   SKM-LDADVTDSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETDADR 62

Query: 411 LKPGVVLSFKVVIG 424
                  S  + IG
Sbjct: 63  KLLAAKGSVPIGIG 76

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELRH--VIV 399
                      IG N  I  ++I +   IG NV I     + +     DG  ++   V V
Sbjct: 64  LLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTV 123

Query: 400 CDGVIMKAGAV 410
               ++ +G +
Sbjct: 124 IKDALIPSGII 134

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGVI 404
           +   GT+I  N++I+    +     IG NV I+ + I D   I D   +    +  +  I
Sbjct: 65  MAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAI 124

Query: 405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGT 459
                VL    +L+ + +  E   +      + +    +    +    A  +   
Sbjct: 125 YGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAF 179

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI-GSNVLIEGSYIWDNVIIEDGCELRH- 396
           +A++     +    +IG N  I  + I +G  I  +  +   S   +  I  D   L   
Sbjct: 75  NARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQS 134

Query: 397 -VIVCDGVI 404
            ++   G+ 
Sbjct: 135 EILAIQGLT 143

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 25/152 (16%)

Query: 294 YDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTK 353
              ++ + +         D         K+  +         Q    +V     +  G  
Sbjct: 66  SFRINDNKVMDGAETRYYD---------KVPMKFADYDEARFQKEGFRVVPPATVRQGAF 116

Query: 354 IGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL---------------RHV 397
           I  N+ +  S +  G  +    +++  + +     I     L                  
Sbjct: 117 IARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPT 176

Query: 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429
           I+ D   + A + +  GV++    VI     +
Sbjct: 177 IIEDNCFIGARSEVVEGVIVEEGSVISMGVYL 208

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 11/114 (9%), Positives = 24/114 (21%), Gaps = 15/114 (13%)

Query: 337 SRSAQVGSFTVIGYGTKIGSNSKISD--------------SVIGEGCTIGSNVLI-EGSY 381
                +          ++G  S                   ++ +   IG    I  G  
Sbjct: 15  KSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVT 74

Query: 382 IWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435
           I  N          +     G   +        + +    +IG    +     +
Sbjct: 75  IIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVI 128

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 31  AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVID 90
           AI+LA           +   K L+P    PM+ + L  L AAG++ V+V           
Sbjct: 5   AIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPAPA 63

Query: 91  YLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNML 145
                         ++ +E       G  L       V  GD   ++ + V  +L
Sbjct: 64  L-----TLPDRGGLLENLEQALEHVEGRVL-------VATGDIPHLTEEAVRFVL 106

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 346 TVIGYGTKIGSNSKISDSV-IGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC 400
           T I    +I S  +I  +V +     IG+  ++       +  I  G  + + ++ 
Sbjct: 9   TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIE 64

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 33/165 (20%), Positives = 50/165 (30%), Gaps = 10/165 (6%)

Query: 278 HEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQS 337
             I    A  I   R  D   +       Y               L  +         Q+
Sbjct: 71  PSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQN 130

Query: 338 RSAQVGSFTVIGYGTKIGSNSKISDS---VIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394
           + +       I    KIG       +   V+GE   I ++V I           E G   
Sbjct: 131 QISVA-FDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGD-- 187

Query: 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKV 435
           RH  V +GV++ AGA +   + +     IG   VV    P ++  
Sbjct: 188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATA 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	616
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.98
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.97
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.96
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.94
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.93
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.9
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.89
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.79
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.72
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.54
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.47
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.46
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.45
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.44
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.41
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.41
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.4
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.38
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.36
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.34
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.33
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.27
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.24
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.23
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.23
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.22
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.22
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.2
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.19
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.18
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.18
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.17
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.12
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.07
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.07
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.07
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.06
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.01
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.0
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.0
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.95
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.93
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.92
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.91
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.84
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	98.79
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.78
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.77
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	98.6
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.48
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.41
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	98.4
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.37
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.04
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	97.95
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	96.64

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=1.6e-32  Score=279.73  Aligned_cols=235  Identities=15%  Similarity=0.164  Sum_probs=190.9

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +++|||||||+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|+|+ ++.+++++++......   +++++
T Consensus         1 k~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~---g~~I~   77 (292)
T d1fxoa_           1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNW---GLDLQ   77 (292)
T ss_dssp             CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG---TCEEE
T ss_pred             CcEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcccccc---CeEEE
Confidence            3699999999999999999999999999999999999999999999999988876 5688999999764321   57899


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC--EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD--FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d--fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.+++..|+|+|+..  ++.++.++  ||++++|++++.+|.+++++|.++     ++.+|+++.++.     ++.|||
T Consensus        78 y~~q~~~~Gta~ai~~--a~~~i~~~~~~lil~dD~~~~~dl~~ll~~h~~~-----~~~~~i~~~~V~-----~p~~yG  145 (292)
T d1fxoa_          78 YAVQPSPDGLAQAFLI--GESFIGNDLSALVLGDNLYYGHDFHELLGSASQR-----QTGASVFAYHVL-----DPERYG  145 (292)
T ss_dssp             EEECSSCCCGGGHHHH--THHHHTTSEEEEEETTEEEECTTHHHHHHHHHTC-----CSSEEEEEEECS-----CGGGSE
T ss_pred             EccCCCCCcHHHHHHh--hhhhcCCCceEEEEccccccCcCHHHHHHHHHhC-----CCCcEEEEEECC-----CHHHCe
Confidence            9999999999999995  56678755  677788899999999999999886     366788888765     456899


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                          |+.+|. ++++..+.|||..+                   .+++..+|+|++.++++.++..-..-.. .+.++.+
T Consensus       146 ----V~~~d~-~~ki~~~~EKP~~p-------------------~Snla~~G~Y~f~~~~~~~~~~l~~s~r-gE~eitD  200 (292)
T d1fxoa_         146 ----VVEFDQ-GGKAISLEEKPLEP-------------------KSNYAVTGLYFYDQQVVDIARDLKPSPR-GELEITD  200 (292)
T ss_dssp             ----EEEECT-TSCEEEEEESCSSC-------------------SSSEEEEEEEEECTTHHHHHHHCCCCTT-SSCCHHH
T ss_pred             ----EEEEcC-CCCEeEEEECCCCC-------------------CCCcEEEEEEEEChHHHHHHHhCCCCCC-CchhhHH
Confidence                888884 78999999999733                   2688899999999999988764321110 1233455


Q ss_pred             hhhccccCceEEEEEcccc-chhhccChhhHHHHhhhhh
Q 007143          265 LLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDII  302 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil  302 (616)
                      +++..+..+++.++.+..+ +|.|++|+.+|..++..+.
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~  239 (292)
T d1fxoa_         201 VNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA  239 (292)
T ss_dssp             HHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence            5555555677888777655 6999999999999997653

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.6e-31  Score=268.37  Aligned_cols=232  Identities=16%  Similarity=0.191  Sum_probs=184.3

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhc-CCCCCCCcEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENS-EWFSQPNFTVK  106 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~-~~~~~~~~~i~  106 (616)
                      |+|||||||+||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|+++++ ...+++++.+. +|    +++++
T Consensus         2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~g~~~----gi~I~   77 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEF----GIQLE   77 (291)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGG----TCEEE
T ss_pred             ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCchHhh----CcEEE
Confidence            89999999999999999999999999999999999999999999999999999875 56778888653 33    68899


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC--EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD--FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d--fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.++++.|+|+|+..  ++.++.++  ||++++|+++..++..+++.|.++.     ..+||++.++.     ++.+||
T Consensus        78 y~~Q~~plGta~Ai~~--a~~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~-----~~atI~~~~V~-----dP~~yG  145 (291)
T d1mc3a_          78 YAEQPSPDGLAQAFII--GETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAART-----EGATVFGYQVM-----DPERFG  145 (291)
T ss_dssp             EEECSSCCCSTHHHHH--THHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCC-----SSEEEEEEECS-----CCSSSB
T ss_pred             EEECCCCCchHHHHHH--HHHHhCCCCeEEEECCCcccCcCHHHHHHHHHhCc-----CCcEEEEEECC-----CcccCC
Confidence            9999999999999985  56677755  4555666789999999999998753     45788888875     567999


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                          ++.+|. +++|..+.|||..+                   .+++..+|+|+++|++++.+..-..-.. .+..+.+
T Consensus       146 ----Vve~d~-~g~i~~i~EKP~~p-------------------~Sn~a~~GiY~f~~~v~~~~~~lk~s~r-gE~EItd  200 (291)
T d1mc3a_         146 ----VVEFDD-NFRAISLEEKPKQP-------------------KSNWAVTGLYFYDSKVVEYAKQVKPSER-GELEITS  200 (291)
T ss_dssp             ----BCEEET-TEEEEECCBSCSSC-------------------SCSEEEEEEEECCTHHHHHHHSCCCCSS-SSCCHHH
T ss_pred             ----Cceecc-CcceeEEEECCCCC-------------------CCCeEEEEEEEeChHHHHHHhcCCCCCC-CceeehH
Confidence                888884 78999999999743                   2578899999999999998864210000 0111334


Q ss_pred             hhhccccCceEEEEEcccc-chhhccChhhHHHHhhhh
Q 007143          265 LLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       265 ~l~~~i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~di  301 (616)
                      +++..+..+++..+.+..+ +|.|++++++|..|+..+
T Consensus       201 l~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v  238 (291)
T d1mc3a_         201 INQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV  238 (291)
T ss_dssp             HHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence            4444445566666666655 699999999999998754

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.96  E-value=3e-29  Score=257.42  Aligned_cols=264  Identities=16%  Similarity=0.228  Sum_probs=178.9

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCCC---
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQ---  100 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~---  100 (616)
                      ...+.|||||||+||||+|+|..+|||||||+| +|||+|+|+.|..+|+++|+|+++++.+++.+|+.+.. |...   
T Consensus         9 ~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~   88 (307)
T d1yp2a2           9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK   88 (307)
T ss_dssp             HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-------
T ss_pred             CCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhccccccccccc
Confidence            345899999999999999999999999999987 69999999999999999999999999999999997632 2111   


Q ss_pred             -CCcEEEEEeCCC------ccCHHHHHHHHHh--cccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEec
Q 007143          101 -PNFTVKTIESHN------IISAGDALRLIYE--QNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK  171 (616)
Q Consensus       101 -~~~~i~~i~~~~------~~~~gdalr~~~~--~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~  171 (616)
                       .++...+..+..      ..|++++++....  +....++|++++||++++.++..+++.|+.+.     +..|+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~-----~~~~~~~~~  163 (307)
T d1yp2a2          89 NEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETD-----ADITVAALP  163 (307)
T ss_dssp             -CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTT-----CSEEEEEEE
T ss_pred             ccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhcc-----ccceEEEEe
Confidence             133333333222      2588998875321  12233569999999999999999999998863     555555544


Q ss_pred             CCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCC-cceEeehHhhhcC-CceEEEeccccceeEeeCHhHHhhh-
Q 007143          172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSK-GTICLDKMLLAEN-PSISLHNDKQDCYIDICSPEVLSLF-  248 (616)
Q Consensus       172 ~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~-~~~~l~~~l~~~~-~~~~ir~dl~d~gIyIcsp~vl~lf-  248 (616)
                      ....   ...++|    ++.+|+ .++|..|.|+|.... .....+..++... .....+..+..+|+|+++++++..+ 
T Consensus       164 ~~~~---~~~~~g----vv~~d~-~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~  235 (307)
T d1yp2a2         164 MDEK---RATAFG----LMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLL  235 (307)
T ss_dssp             ECHH---HHTTSE----EEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHH
T ss_pred             cccc---cccccc----eEEECC-CCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHh
Confidence            3322   344676    888885 899999999986210 0011111111110 0111234577889999999998654 


Q ss_pred             hcCCChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhcccc
Q 007143          249 TDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT  306 (616)
Q Consensus       249 ~dnfd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~  306 (616)
                      .+.+..   ..+|...++...+ .|.+++++.++ +||.+|+||++|.+|+++++..-.
T Consensus       236 ~~~~~~---~~~~~~d~i~~li~~g~~v~~~~~~-g~W~Digt~~~~~~a~~~ll~~~~  290 (307)
T d1yp2a2         236 RDKFPG---ANDFGSEVIPGATSLGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPV  290 (307)
T ss_dssp             HTTCTT---CCCTTTTHHHHHHHTTCCEEEEECC-SCCEECSSHHHHHHHHHGGGCSSS
T ss_pred             hhcccc---ccchHHHHHHHHHHCCCcEEEEEeC-CeEEECcCHHHHHHHHHHHhcCCC
Confidence            332221   1233344443322 57789999997 899999999999999999998643

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.94  E-value=1.2e-26  Score=237.50  Aligned_cols=233  Identities=14%  Similarity=0.124  Sum_probs=178.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      .|||||||||.||||+|+|...||||+||+|+|||+|+|+.|..+|+++++|+++++ .+.+++++.+...   .++++.
T Consensus         3 ~MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~~~---~~~~i~   79 (295)
T d1lvwa_           3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQ---FGVRFS   79 (295)
T ss_dssp             SCEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGG---GTSEEE
T ss_pred             CcEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccchh---cCCEEE
Confidence            589999999999999999999999999999999999999999999999999999865 5777888765321   146889


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC--EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD--FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG  184 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d--fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~  184 (616)
                      ++.+++.+|||+|+..  ++..+.++  +|++++|++...++..++..|.+.     +..+|+++.+..     ++.+||
T Consensus        80 ~v~e~~~~gta~Al~~--a~~~l~~~~~~li~~~d~~~~~~~~~~~~~~~~~-----~~~~ti~~~~~~-----~~~~yG  147 (295)
T d1lvwa_          80 YRVQEEPRGIADAFIV--GKDFIGDSKVALVLGDNVFYGHRFSEILRRAASL-----EDGAVIFGYYVR-----DPRPFG  147 (295)
T ss_dssp             EEECSSCCCGGGHHHH--THHHHTTSCEEEEETTCCEECTTHHHHHHHHHTC-----CSSEEEEEEECS-----CCTTSE
T ss_pred             EEECCCCCCHHHHHHH--HHHHcCCCCEEEEeCCcceechhHHHHHHHHHhC-----CCCeEEEEEEcC-----CCcccc
Confidence            9999999999999974  45567665  677788888899999999988874     466788887755     445788


Q ss_pred             CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                          ++.++. .++|..|.|||..+.                   ++++..|+|++.+.++.++.+-..- ...+..+..
T Consensus       148 ----~i~~~~-~~~v~~~~EKp~~~~-------------------s~~~~~Giy~~n~~if~~~~~~~~~-~~~e~~~~~  202 (295)
T d1lvwa_         148 ----VVEFDS-EGRVISIEEKPSRPK-------------------SNYVVPGLYFYDNQVVEIARRIEPS-DRGELEITS  202 (295)
T ss_dssp             ----EEEECT-TSBEEEEEESCSSCS-------------------CSEECCSEEEECTTHHHHHHHCCCC-TTSCCCHHH
T ss_pred             ----EEEECC-CCcEEEEeecccCcc-------------------cceeecceEEECHHHHHHHHhcCCC-cCCCeeccc
Confidence                787774 789999999986321                   4577889999999999876542110 001122333


Q ss_pred             hhhccccCc--eEEEEEccccchhhccChhhHHHHhhhh
Q 007143          265 LLLDDIMGY--KIFTHEIHSSYAARIDNYRSYDIVSKDI  301 (616)
Q Consensus       265 ~l~~~i~g~--~I~~~~~~~~y~~~V~s~~sY~~a~~di  301 (616)
                      ++...+..+  +++.+... .+|.+++++.+|..++.++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~-~~w~Digt~~~l~~~s~~i  240 (295)
T d1lvwa_         203 VNEEYLRMGKLRVELMGRG-MAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             HHHHHHHTTCEEEEEECTT-CEECCCSSHHHHHHHHHHH
T ss_pred             hHHHHHHhCCCeEEEcCCC-cEEeCCCChHHHHHHHHHH
Confidence            333333333  34444433 6899999999999998875

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=7.1e-25  Score=217.67  Aligned_cols=232  Identities=15%  Similarity=0.231  Sum_probs=163.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCC---------
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEW---------   97 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~---------   97 (616)
                      |..+|||||||.|+||+|+|...||||+||+|+|||+|+|+.|.++|+++|+|++++..+++++|+.+...         
T Consensus         1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~   80 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM   80 (259)
T ss_dssp             CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred             CCceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchh
Confidence            34799999999999999999999999999999999999999999999999999999999999999865210         


Q ss_pred             ---------CCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEE
Q 007143           98 ---------FSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMI  168 (616)
Q Consensus        98 ---------~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v  168 (616)
                               .......+.++.+....+++.++..+........+|+++.+|.+++.++..+++.|....     ..+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~  155 (259)
T d1tzfa_          81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHG-----KKATLT  155 (259)
T ss_dssp             GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHC-----CSEEEE
T ss_pred             ccccchhhhccccccceeEEeccccccccchhhhhhhhccCCCceEEeccccccccchhhhhhhhcccc-----cceeec
Confidence                     000123566777777888888887643322223449999999999999999999988863     455554


Q ss_pred             EecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhh
Q 007143          169 IKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF  248 (616)
Q Consensus       169 ~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf  248 (616)
                      ....       ..+++    .+...  ..++..+.+.+..                    .+.+..+|+|++++.++..+
T Consensus       156 ~~~~-------~~~~~----~~~~~--~~~i~~~~~~~~~--------------------~~~~~~~G~y~~~~~~~~~i  202 (259)
T d1tzfa_         156 ATFP-------PGRFG----ALDIQ--AGQVRSFQEKPKG--------------------DGAMINGGFFVLNPSVIDLI  202 (259)
T ss_dssp             EECC-------CCCSE----EEEEE--TTEEEEEEESCSC--------------------CSCCEECCCEEECGGGGGGC
T ss_pred             cccc-------cccCC----ceecc--cceEEeeeecccc--------------------ceeeecceeccccchhhhhc
Confidence            4432       12332    33222  4566655554321                    24567789999999999988


Q ss_pred             hcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143          249 TDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ  303 (616)
Q Consensus       249 ~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~  303 (616)
                      .++..+.  ..++++.++    ..+++++|.++ +||.+|+|+++|..+++.+..
T Consensus       203 ~~~~~~~--~~~~l~~l~----~~~~v~~~~~~-g~W~didt~~d~~~~~~~~~~  250 (259)
T d1tzfa_         203 DNDATTW--EQEPLMTLA----QQGELMAFEHP-GFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CSTTCCT--TTHHHHHHH----HTTCEEEEEEC-SCEEECCSHHHHHHHHHHHHT
T ss_pred             ccCcCcc--HHHHHHHHH----hcCCeEEEEeC-CEEEECCCHHHHHHHHHHHHc
Confidence            7654321  234444443    44689999987 899999999999988776654

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.2e-23  Score=212.02  Aligned_cols=238  Identities=13%  Similarity=0.168  Sum_probs=159.6

Q ss_pred             CCeEEEEEeCCCCCCCCCC-CCCCCcccceeC-CeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143           27 QPLQAILLADSFTTKFRPI-TLERPKVLLPLV-NVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNF  103 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~Pl-T~~~PK~Llpi~-g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~  103 (616)
                      |++.|||||||.||||+|| |..+||+|+||. |+|||+|+|+.|... +.++++|++++..+.+.++...       + 
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~-------~-   72 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD-------G-   72 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-------S-
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-------c-
Confidence            3567999999999999999 577899999985 699999999998874 6788999888888877765432       2 


Q ss_pred             EEEEEeCCCccCHHHHHHHHHhcccc--cCCEEEEeCceecchhH--HHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007143          104 TVKTIESHNIISAGDALRLIYEQNVI--HGDFVLISGDTVSNMLL--TQALQEHKERKKKDNNAVMTMIIKKSKPSPITH  179 (616)
Q Consensus       104 ~i~~i~~~~~~~~gdalr~~~~~~~i--~~dfLlv~gD~i~~~~l--~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~  179 (616)
                       +.++.++...+++.++.........  .+.|||++||++.+.++  ...+..+...  ..++..+|+..++..+     
T Consensus        73 -~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-----  144 (268)
T d2cu2a2          73 -IRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEA--AEEGFVVALGLRPTRP-----  144 (268)
T ss_dssp             -SEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHH--CCTTCEEEEEECCSSC-----
T ss_pred             -cceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHH--HhcCCeEeeecccccc-----
Confidence             3455567788888887754332211  23499999999887664  4445444332  3356788888887653     


Q ss_pred             ccccCCCceEEEEeCCC---CeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhh-hcCCC--
Q 007143          180 QSRLGTDELFMAIDPNT---KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF-TDNFD--  253 (616)
Q Consensus       180 ~~r~~~~~~vv~id~~~---~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf-~dnfd--  253 (616)
                      .++||    ++.+++..   .+|..|.|||.....     ......       ..+.++|||++++.++... .+...  
T Consensus       145 ~~~yG----~i~~~~~~~~~~~v~~f~EKp~~~~~-----~~~~~~-------~~~~N~Giy~f~~~~l~~~~~~~~p~i  208 (268)
T d2cu2a2         145 ETEYG----YIRLGPREGAWYRGEGFVEKPSYAEA-----LEYIRK-------GYVWNGGVFAFAPATMAELFRRHLPSH  208 (268)
T ss_dssp             CSSSC----EEEEEEEETTEEEEEEEECCCCHHHH-----HHHHHT-------TCEEEEEEEEECHHHHHHHHHHHCHHH
T ss_pred             ccccc----eEEeccccccchhhheeecccchhhh-----hhhhcc-------CcccchhhhhcchHHHHHHHHhhhHHH
Confidence            46788    88776533   379999999862110     111111       2568899999999887432 21100  


Q ss_pred             hhhHHH--------Hhhhhhhhc-------cccCceEEEEEccccchhhccChhhHHHHh
Q 007143          254 YQHLRR--------HFVKGLLLD-------DIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       254 ~q~lr~--------dfv~~~l~~-------~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                      +..++.        +..+.+ ++       +.+..++.++.++ ++|.||+||.+++++.
T Consensus       209 ~~~~~~~~~~~~~~~~f~~l-~~iSiDyavlEk~~~v~~v~~d-~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         209 HEALERLLAGASLEEVYAGL-PKISIDYGVMEKAERVRVVLGR-FPWDDVGNWRALERVF  266 (268)
T ss_dssp             HHHHHHHHTTCCHHHHHHTS-CCCCHHHHTGGGCSSEEEEEEC-SCEECCCSTTHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHhhC-ccccchhhhhcccCCceEEecC-CCcCCCcCHHHHHHHh
Confidence            111111        111111 00       1234679999997 8999999999998764

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=2.2e-23  Score=203.66  Aligned_cols=222  Identities=14%  Similarity=0.250  Sum_probs=154.3

Q ss_pred             CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +++|+|||||||.|+||+|+|...||||+||+|+|||+|+|+.|..+|+++|+|++++..++++.+...  |    ++++
T Consensus         1 ~m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~--~----~i~i   74 (229)
T d1jyka_           1 EIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK--Y----GVRL   74 (229)
T ss_dssp             CCCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH--H----CCEE
T ss_pred             CCceeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhhh--c----cccc
Confidence            578999999999999999999999999999999999999999999999999999999888888655443  2    3555


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      .+..+....|++.++..  ++..+.++|++.++|++....+...+    .     +...+++....        ..+++ 
T Consensus        75 ~~~~~~~~~Gt~~sl~~--a~~~l~~~~ii~~dd~~~~~~~~~~~----~-----~~~~~~~~~~~--------~~~~~-  134 (229)
T d1jyka_          75 VFNDKYADYNNFYSLYL--VKEELANSYVIDADNYLFKNMFRNDL----T-----RSTYFSVYRED--------CTNEW-  134 (229)
T ss_dssp             EECTTTTTSCTHHHHHT--TGGGCTTEEEEETTEEESSCCCCSCC----C-----SEEEEECEESS--------CSSCC-
T ss_pred             ccccccccccccccccc--chhhhcccccccccccccccchhhhh----h-----ccccceeeeee--------ccccc-
Confidence            55555566788888874  56778777888777777654433211    1     22344433221        12333 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCC--h--hhHHHHh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD--Y--QHLRRHF  261 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd--~--q~lr~df  261 (616)
                         ++..+ +.+++..+.++|.                      .+..-+|+|++++.....+....+  +  ......+
T Consensus       135 ---~~~~~-~~~~i~~~~~~~~----------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (229)
T d1jyka_         135 ---FLVYG-DDYKVQDIIVDSK----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLY  188 (229)
T ss_dssp             ---EEEEC-TTCBEEEEECCCS----------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCC
T ss_pred             ---eeEEc-cCCceeeEEEecc----------------------cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhH
Confidence               56666 4788888887754                      123457899999887664432110  0  0001122


Q ss_pred             hhhhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      ...++...+....++++.+....|.+|+++++|..+.+
T Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~  226 (229)
T d1jyka_         189 WDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEE  226 (229)
T ss_dssp             TTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHH
Confidence            33344444556788888887567999999999988864

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=1.1e-18  Score=171.29  Aligned_cols=229  Identities=13%  Similarity=0.172  Sum_probs=152.3

Q ss_pred             EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143           30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE  109 (616)
Q Consensus        30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~  109 (616)
                      .|||||||.|+||+|   .+||||+||+|+|||+|+|+.|.++|+++++|++++..+.+..+....         +.+..
T Consensus         3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~---------~~~~~   70 (250)
T d1g97a2           3 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQ---------TEFVT   70 (250)
T ss_dssp             EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTT---------SEEEE
T ss_pred             EEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhcccc---------ccccc
Confidence            699999999999999   579999999999999999999999999999999999888888776542         22333


Q ss_pred             CCCccCHHHHHHHHHhc-ccccCCEEEE-eCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143          110 SHNIISAGDALRLIYEQ-NVIHGDFVLI-SGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD  186 (616)
Q Consensus       110 ~~~~~~~gdalr~~~~~-~~i~~dfLlv-~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~  186 (616)
                      .....|++.++..+... .....+++++ .+|. +...+|..+++.|+..     .+.+|+...+..     ....++  
T Consensus        71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~-----~~~~~~--  138 (250)
T d1g97a2          71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINH-----KNVATILTAETD-----NPFGYG--  138 (250)
T ss_dssp             CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHT-----TCSEEEEEEECS-----CCTTSC--
T ss_pred             cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhh-----ccccccccceec-----ccCCCc--
Confidence            45566887776643221 1222344444 4443 6677999999999886     366676666543     233444  


Q ss_pred             ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH-HHHhhhhh
Q 007143          187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL-RRHFVKGL  265 (616)
Q Consensus       187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l-r~dfv~~~  265 (616)
                        .+..+ ..+++..+.+++......               ...++..+|+|++++..+.-+-+....... ...++..+
T Consensus       139 --~~~~~-~~~~v~~~~~~~~~~~~~---------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~  200 (250)
T d1g97a2         139 --RIVRN-DNAEVLRIVEQKDATDFE---------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDV  200 (250)
T ss_dssp             --EEEEC-TTCCEEEEECGGGCCHHH---------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGH
T ss_pred             --eEEEe-eceEEEEeeccccccccc---------------cccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHH
Confidence              44443 577888888876522100               023566889999988776543221111010 11233444


Q ss_pred             hhccc-cCceEEEEEccccchhh--ccChhhHHHHhhhh
Q 007143          266 LLDDI-MGYKIFTHEIHSSYAAR--IDNYRSYDIVSKDI  301 (616)
Q Consensus       266 l~~~i-~g~~I~~~~~~~~y~~~--V~s~~sY~~a~~di  301 (616)
                      +...+ .|.+|.++.++ ++|..  |+|+++...|.+-+
T Consensus       201 ~~~~~~~g~~V~~~~~~-~~~~~~gInt~~dL~~ae~~~  238 (250)
T d1g97a2         201 IGIFRETGEKVGAYTLK-DFDESLGVNDRVALATAESVM  238 (250)
T ss_dssp             HHHHHHTTCCEEEEECS-SGGGGCCCSSHHHHHHHHHHH
T ss_pred             HHHHHHCCCeEEEEEcC-CcceecCCCCHHHHHHHHHHH
Confidence            33322 46789999997 78765  77998876664443

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.3e-16  Score=156.45  Aligned_cols=224  Identities=12%  Similarity=0.143  Sum_probs=136.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .|++||||||.|+||+|   .+||||+||+|+|||+|+|+.|...|+++|+|++++..+.+..+...        ....+
T Consensus         2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~--------~~~~~   70 (248)
T d2oi6a2           2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD--------DNLNW   70 (248)
T ss_dssp             CEEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC--------TTEEE
T ss_pred             CceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeeccc--------ccccc
Confidence            59999999999999998   67999999999999999999999999999999999998888877644        23455


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCCEEEEeCceecch--hHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNM--LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~--~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      +......|+++++..+...-....++++..+|.....  .+..++   ....   ....+++.+....      +.+++ 
T Consensus        71 ~~~~~~~g~~~~~~~~~~~i~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~------~~~~~-  137 (248)
T d2oi6a2          71 VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLR---DAKP---QGGIGLLTVKLDD------PTGYG-  137 (248)
T ss_dssp             EECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHH---HHCC---TTSEEEEEEECSC------CTTSC-
T ss_pred             cccccCcccHHHHHhhhhhhccccceeeecCccccccchhHHHHH---HHhh---ccccceeEEEecC------Ccccc-
Confidence            5666778999998865432112234788888885432  222222   1111   1222222233222      22333 


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH-----HHH
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL-----RRH  260 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l-----r~d  260 (616)
                         .+..+  .++.......+......               ....+..+++|++....+.-+-+.......     -.|
T Consensus       138 ---~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd  197 (248)
T d2oi6a2         138 ---RITRE--NGKVTGIVEHKDATDEQ---------------RQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITD  197 (248)
T ss_dssp             ---EEEEE--TTEEEEEECGGGCCTTG---------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTH
T ss_pred             ---ccccc--cCccceeeeccCCChhh---------------hhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhH
Confidence               44444  34555554433211100               012334567788877665432211100000     123


Q ss_pred             hhhhhhhccccCceEEEEEccccchh--hccChhhHHHHhh
Q 007143          261 FVKGLLLDDIMGYKIFTHEIHSSYAA--RIDNYRSYDIVSK  299 (616)
Q Consensus       261 fv~~~l~~~i~g~~I~~~~~~~~y~~--~V~s~~sY~~a~~  299 (616)
                      ++..++.   .|.+|+++... .+|.  .|+|++++..|.+
T Consensus       198 ~~~~~~~---~g~~v~~v~~~-~~~e~~gI~t~eDL~~ae~  234 (248)
T d2oi6a2         198 IIALAYQ---EGREIVAVHPQ-RLSEVEGVNNRLQLSRLER  234 (248)
T ss_dssp             HHHHHHH---TTCCEEEECCS-SGGGGCCCSSHHHHHHHHH
T ss_pred             HHHHHHH---CCCeEEEEEcC-CHHHhCCCCCHHHHHHHHH
Confidence            3333322   46788988776 5663  4889998876644

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=5.1e-14  Score=131.19  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEec-----eEECCCCEECCCcEEec
Q 007143          326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRH  396 (616)
Q Consensus       326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~  396 (616)
                      .+..+++++.|++.++|.+++.||++|.|+++|+|.    .+.||++|.|+.++.+..     ++|++++.++.++.+.+
T Consensus        11 ~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~   90 (172)
T d1xhda_          11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (172)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             cCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccc
Confidence            445699999999999999999999999999999995    368999999999999973     78999999999999999


Q ss_pred             eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      +.|+++++||.+++|.++++||++|+||++++|.++..|...
T Consensus        91 ~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~  132 (172)
T d1xhda_          91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPN  132 (172)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             cccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCC
Confidence            999999999999999999999999999999988877776543

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=4.1e-13  Score=133.35  Aligned_cols=55  Identities=13%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI  377 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I  377 (616)
                      ...+.+.+++++.|+++|+|++++.||++|.|+++++|. ++.||++|.|.++|+|
T Consensus         8 iI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I   63 (259)
T d1j2za_           8 IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   63 (259)
T ss_dssp             EECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence            445567788888888888888888888888888888885 7888888888887777

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.46  E-value=2.8e-13  Score=130.33  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEe------------------------c
Q 007143          329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE------------------------G  379 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~------------------------~  379 (616)
                      .+++++.|++++.|.+++.||++|.|+++|+|+     ..+||++|.|+++|+|+                        .
T Consensus        24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (210)
T d1qrea_          24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYA  103 (210)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEES
T ss_pred             ccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccc
Confidence            588899999999988899999999999999993     57899999999999994                        3


Q ss_pred             eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143          380 SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV  429 (616)
Q Consensus       380 s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v  429 (616)
                      ++|+++|.||.++.|. ++.||++++||.+++|. +++||++|+|++++++
T Consensus       104 ~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~-~~~IG~~~vIg~~svv  153 (210)
T d1qrea_         104 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVF-KSKVGNNCVLEPRSAA  153 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEE-EEEECTTCEECTTCEE
T ss_pred             eeeccccccccccccccCCcccCCcEeeCCcccc-ccccccCcEEecCcEe
Confidence            7899999999999996 68999999999999887 4678888888776654

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=5.3e-13  Score=124.27  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----ceEECCCCEECCC
Q 007143          321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDG  391 (616)
Q Consensus       321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~  391 (616)
                      |.+...+..+++++.|++++.|.+++.||++|.|+++++|.    .+.||++|.++.++.+.     ...++.++.+...
T Consensus         4 y~~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (173)
T d1v3wa_           4 YEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHN   83 (173)
T ss_dssp             ECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTT
T ss_pred             EECCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeee
Confidence            33444556789999999999999999999999999999995    56799999999999996     3567788888888


Q ss_pred             cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       392 ~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      +....+.||++++||.+++|.+|++||++|+||++++|++++.|...
T Consensus        84 ~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~  130 (173)
T d1v3wa_          84 AMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDY  130 (173)
T ss_dssp             CEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTT
T ss_pred             eeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCC
Confidence            88888999999999999999999999999999999888877777543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.44  E-value=9.7e-13  Score=124.24  Aligned_cols=51  Identities=24%  Similarity=0.258  Sum_probs=38.8

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECC
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGS  373 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~  373 (616)
                      +..+.+.+++++.|+++++|++++.||++|.|+++++|.++.||++|.|..
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~   60 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN   60 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc
Confidence            344566677777777777777788888888888888888788888877653

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.41  E-value=1e-12  Score=126.25  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             eecceEEcCCcEECCCCEE----CCCcEECCCCEECCCCEEe------------------------ceEECCCCEECCCC
Q 007143          324 ERRGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS------------------------DSVIGEGCTIGSNV  375 (616)
Q Consensus       324 ~~~~i~~~~~v~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~------------------------~s~IG~~~~Ig~~~  375 (616)
                      ..+++.+|+++.|+++|.|    +.++.||++|.|+++++|+                        .+.||++|.||.++
T Consensus        37 i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~  116 (210)
T d1qrea_          37 VIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQS  116 (210)
T ss_dssp             EEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTC
T ss_pred             EecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecccccccccc
Confidence            3457888888888888888    4578899999999999883                        47899999999999


Q ss_pred             EEe-ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143          376 LIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH  432 (616)
Q Consensus       376 ~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~  432 (616)
                      .|. ++.|++++.||.++.|.++.||++|.|+.++.+. |++|++++.|++++++..+
T Consensus       117 ~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~-g~~i~~g~~I~~g~~v~g~  173 (210)
T d1qrea_         117 QVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAI-GVTIPDGRYIPAGMVVTSQ  173 (210)
T ss_dssp             EEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEE-SCEECTTBEECTTCEECSH
T ss_pred             ccccCCcccCCcEeeCCccccccccccCcEEecCcEec-CcEeCCCcEECCCcEEeCC
Confidence            996 6999999999999999999999999999888775 6666666666666655543

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=5.3e-13  Score=127.10  Aligned_cols=110  Identities=20%  Similarity=0.206  Sum_probs=86.4

Q ss_pred             EcCCcEECCCCEE--CCCcEECCCCEECCCCEE---eceEECCCCEECCCCEEece-EECCCCEECCCcEE-eceEECCC
Q 007143          330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCEL-RHVIVCDG  402 (616)
Q Consensus       330 ~~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I---~~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I-~~siIg~~  402 (616)
                      +|+++.|++.+.+  |.++.||++|.|+++|+|   ..+.||++|.||++|+|.+. ...+......+..+ ..+.||++
T Consensus        57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~  136 (200)
T d1krra_          57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN  136 (200)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTT
T ss_pred             CCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccC
Confidence            6777777777766  578899999999999998   36789999999999999643 34444444444443 45778999


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      |+||.+++|.+|++||++|+||+|++|    |+++++...|
T Consensus       137 v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv~G~P  177 (200)
T d1krra_         137 VWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVP  177 (200)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTT
T ss_pred             cccceeeecccccccCCCcEEeCCCEEeeEcCCCcEEEEeC
Confidence            999999999999999999999999985    7777777654

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.40  E-value=2.3e-12  Score=128.03  Aligned_cols=52  Identities=21%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCE
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVL  376 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~  376 (616)
                      .+++.+++++.|+++|+|++++.||++|.|+++++|. ++.||.+|.|++++.
T Consensus        15 ~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~   67 (262)
T d2jf2a1          15 EEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFAS   67 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecc
Confidence            3445555566666666666666666666666666663 444444444433333

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.38  E-value=2.5e-12  Score=121.84  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             EEcCCcEECCCCEEC--CCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcE
Q 007143          329 YRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVI  404 (616)
Q Consensus       329 ~~~~~v~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~  404 (616)
                      ++++++.|++++.|+  .++.|++++.|+++     +.||++|.|+.++.|. ++.|++++.++.++.+. ++.||++|+
T Consensus        76 ~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~-----~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~  150 (193)
T d3bswa1          76 LIHKSALISPSAIVEENAGILIMPYVVINAK-----AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCF  150 (193)
T ss_dssp             EECTTCEECTTSEECTTSCCEECTTCEECTT-----CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ecCCCcEEeeeeEEccccCceEeeeeeecCC-----ceeeeccccccccccceeeeccccccccccccccccceeecccc
Confidence            355555555555553  23444444444444     4556666666665553 45566666666666663 255566666


Q ss_pred             ECCCCEECCCCEECCCcEECCCCE
Q 007143          405 MKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       405 Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      ||.+++|.+++.||++|+||+|++
T Consensus       151 IG~~s~I~~~v~Ig~~~~Igagsv  174 (193)
T d3bswa1         151 LGINSCVLPNLSLADDSILGGGAT  174 (193)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCE
T ss_pred             CCceeeEcCCeEECCCCEECCCCE
Confidence            666666666666666666666655

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.38  E-value=2.4e-12  Score=127.85  Aligned_cols=14  Identities=21%  Similarity=0.190  Sum_probs=7.7

Q ss_pred             EECCCCEECCCcEE
Q 007143          381 YIWDNVIIEDGCEL  394 (616)
Q Consensus       381 ~I~~~v~Ig~~~~I  394 (616)
                      .|++++.|+++|.|
T Consensus        85 ~IG~~v~ig~~~~i   98 (262)
T d2jf2a1          85 EIGDRNRIRESVTI   98 (262)
T ss_dssp             EECSSCEECTTCEE
T ss_pred             EECCeeeecceEec
Confidence            35555555555555

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.36  E-value=7.9e-13  Score=118.03  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=52.1

Q ss_pred             CcEECCCCEECCCCEEeceEECCCCEECCCCEEe--ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEE-----
Q 007143          345 FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE--GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVL-----  417 (616)
Q Consensus       345 ~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~--~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vI-----  417 (616)
                      +++||++|.|++++.|+++++..++.++.++.+.  .+.+++++.||.+|.|.+++|+++|+||++++|..++.+     
T Consensus        30 ~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~  109 (135)
T d1yp2a1          30 HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAAR  109 (135)
T ss_dssp             SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEE
T ss_pred             ccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEECCCcEECCCccccccee
Confidence            3444444444444444444433333322222221  122344577888888888888888888888888765443     


Q ss_pred             -------CCC-cEECCCCEECCCCEE
Q 007143          418 -------SFK-VVIGERFVVPAHSKV  435 (616)
Q Consensus       418 -------g~~-v~Ig~~~~v~~~~~v  435 (616)
                             .+| ++||++++|++|++|
T Consensus       110 ~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1         110 ETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             GGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             eCCCEEECCCeEEECCCCEECcCcCC
Confidence                   334 556777777776653

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.3e-12  Score=104.95  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             EECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143          341 QVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA  407 (616)
Q Consensus       341 ~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~  407 (616)
                      .|.+++.||++|.|+++++|+ +++||++|+||++|.|.+|.|+++++|+++|.|++|+|+++|.||+
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP   77 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECc
Confidence            455667777777777777775 6778888888888888888888888888888887777777777765

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=6.8e-12  Score=124.39  Aligned_cols=39  Identities=8%  Similarity=0.021  Sum_probs=24.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++.+++||++|+|+.++.|.++++||++++|+++++|+.
T Consensus       136 i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~k  174 (259)
T d1j2za_         136 LAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGK  174 (259)
T ss_dssp             ECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccccccccceecceeeeecccEeccceeeeeeeeecc
Confidence            344555666666666666666666666666666666654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.27  E-value=2.5e-11  Score=114.86  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=38.1

Q ss_pred             EECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143          364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS  436 (616)
Q Consensus       364 ~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~  436 (616)
                      +|+.+|.||++|.|. +++|+.++.||++|.+. ++.++.+++||++|+|+.+++|.++++||++++|++|++|.
T Consensus       102 ~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~  176 (193)
T d3bswa1         102 VINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLV  176 (193)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEEC
Confidence            455555555555552 45555555555555553 34555555555555555555555555555555555555554

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.9e-11  Score=113.01  Aligned_cols=50  Identities=26%  Similarity=0.400  Sum_probs=41.2

Q ss_pred             eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEE
Q 007143          322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI  371 (616)
Q Consensus       322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~I  371 (616)
                      ...++.+++++++.|+++|+|++++.||++|+|+++|+|....++.++.+
T Consensus         9 ~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~   58 (201)
T d2oi6a1           9 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI   58 (201)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEE
T ss_pred             EEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceee
Confidence            46788899999999999999999999999999999999875554443333

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.8e-11  Score=116.25  Aligned_cols=76  Identities=25%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143          362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE  425 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~  425 (616)
                      ++.||++|.|+.+|+|.   ...||++|.|+++|+|.+             ..++..+.||++|+|+.+|+|.+||+||+
T Consensus        74 nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~  153 (200)
T d1krra_          74 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  153 (200)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence            45778888888888883   568999999999999854             35667899999999999999999999999


Q ss_pred             CCEECCCCEEcc
Q 007143          426 RFVVPAHSKVSL  437 (616)
Q Consensus       426 ~~~v~~~~~v~~  437 (616)
                      +++|++|++|..
T Consensus       154 ~~vIgagSvV~k  165 (200)
T d1krra_         154 NSVIGAGSIVTK  165 (200)
T ss_dssp             TCEECTTCEECS
T ss_pred             CcEEeCCCEEee
Confidence            999999999975

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.5e-12  Score=118.82  Aligned_cols=96  Identities=26%  Similarity=0.329  Sum_probs=66.6

Q ss_pred             ECCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEec-eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCE
Q 007143          342 VGSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVV  416 (616)
Q Consensus       342 I~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~v  416 (616)
                      +|.++.||+++.|+++|+|.   ...||++|.||++|.|.. +.+.+.+....++.+. .++||++|+||.+|+|.+|+.
T Consensus        69 ~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~  148 (182)
T d1ocxa_          69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVT  148 (182)
T ss_dssp             SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCE
T ss_pred             eccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEE
Confidence            34455555555555555552   447999999999999964 4466666666666664 456788888888888888888


Q ss_pred             ECCCcEECCCCEE----CCCCEEcc
Q 007143          417 LSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       417 Ig~~v~Ig~~~~v----~~~~~v~~  437 (616)
                      ||++|+||+|++|    |+++++..
T Consensus       149 IG~~~vIgagsvV~kdvp~~~i~~G  173 (182)
T d1ocxa_         149 IGDNVVVASGAVVTKDVPDNVVVGG  173 (182)
T ss_dssp             ECTTCEECTTCEECSCBCSSEEEET
T ss_pred             ECCCCEECCCCEEccCCCCCeEEEe
Confidence            8888888887774    45555544

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.9e-11  Score=98.05  Aligned_cols=65  Identities=23%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEEC
Q 007143          325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIE  389 (616)
Q Consensus       325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig  389 (616)
                      ++++++++++.|++++.|.+++.||++|+||++|.|++|+||++|.|+++|.|++++|++++.||
T Consensus        12 ~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IG   76 (78)
T d1fxja1          12 RGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIG   76 (78)
T ss_dssp             EEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEES
T ss_pred             eccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEEC
Confidence            34444444444444444444444444444444444444444444444444444444444444444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.22  E-value=7.8e-11  Score=109.15  Aligned_cols=94  Identities=30%  Similarity=0.364  Sum_probs=62.2

Q ss_pred             CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec----eEECCCCEECCCcEEec-----eEECC-----------C
Q 007143          344 SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG----SYIWDNVIIEDGCELRH-----VIVCD-----------G  402 (616)
Q Consensus       344 ~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~----s~I~~~v~Ig~~~~I~~-----siIg~-----------~  402 (616)
                      ....||++|.|+++++|. ++.||++|.||++|+|.+    ..|++++.++.++.+..     ++|++           +
T Consensus        11 ~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~   90 (172)
T d1xhda_          11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (172)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             cCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccc
Confidence            345566666666666663 677777777777777742    46777777777776643     34444           3


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ++|+.+++|+.+++|.++++||++++|+++++|+.
T Consensus        91 ~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~  125 (172)
T d1xhda_          91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ  125 (172)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             cccccceEEecccEeeCCcEEcCcccccceEEEee
Confidence            44666666777777777777777777777777764

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.20  E-value=7.7e-11  Score=110.84  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=24.4

Q ss_pred             CcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          402 GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      .+.||++++|+.++.|.++++||.+++|+++++|+.
T Consensus       142 ~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtk  177 (196)
T d1g97a1         142 KTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITK  177 (196)
T ss_dssp             CEEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             eeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECc
Confidence            445666666666666667777777777777777754

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.19  E-value=1.9e-11  Score=108.80  Aligned_cols=89  Identities=21%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             CEECCCcEECCCCEECCCCEEec-------------eEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEE
Q 007143          340 AQVGSFTVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIM  405 (616)
Q Consensus       340 ~~I~~~~~Ig~~~~Ig~~~~I~~-------------s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~I  405 (616)
                      +.|++++.||+++.|.+.+.+.+             +.+++++.||++|+|.+++|+++|+||++|.+. .+.+.+.+.+
T Consensus        31 s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~  110 (135)
T d1yp2a1          31 SVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARE  110 (135)
T ss_dssp             CEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEG
T ss_pred             cccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEECCCcEECCCcccccceee
Confidence            45555555555555555444433             234566666666666666666666666666663 3444455555


Q ss_pred             CCCCEECCC-CEECCCcEECCCCE
Q 007143          406 KAGAVLKPG-VVLSFKVVIGERFV  428 (616)
Q Consensus       406 g~~~~I~~g-~vIg~~v~Ig~~~~  428 (616)
                      +.++.+..| ++|+++++|++|++
T Consensus       111 ~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1         111 TDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             GGTEEEETTEEEECTTCEECTTCB
T ss_pred             CCCEEECCCeEEECCCCEECcCcC
Confidence            555555555 44666666666654

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.7e-11  Score=118.86  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      |+..|||||+|.|+||++++. .||+|+||+|+|||+|+++.|..+|+++|+|++++....               ....
T Consensus         1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~---------------~~~~   64 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP---------------APAL   64 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS---------------CCSE
T ss_pred             CCceEEEECCCCCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeeccccc---------------eeee
Confidence            457899999999999998874 489999999999999999999999999888877653210               0011


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHH
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~  154 (616)
                       . .....|..+.++..  ...+.+.++++.||.  +....|+.+++.+.
T Consensus        65 -~-~~~~~~~~~~v~~a--l~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~  110 (231)
T d2dpwa1          65 -T-LPDRGGLLENLEQA--LEHVEGRVLVATGDIPHLTEEAVRFVLDKAP  110 (231)
T ss_dssp             -E-ECCCSSHHHHHHHH--HHTCCSEEEEEETTCTTCCHHHHHHHHHHCC
T ss_pred             -e-cccchHHHHHHHHH--HHhhcCceEEeeCCCccCCHHHHHHHHHHhh
Confidence             1 13345666666653  344566799999998  55567888877543

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.18  E-value=8.8e-11  Score=113.78  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=44.9

Q ss_pred             ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143          362 DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA  431 (616)
Q Consensus       362 ~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~  431 (616)
                      +++||++|+|..+++|+ .+.||++|+|+.++.|.         .++|+++|.||+++.|-.|++|+++++|++|++|.+
T Consensus       131 gA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~  210 (274)
T d3tdta_         131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQ  210 (274)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEec
Confidence            33444444444444443 22444444444444442         356777777777777777777777777777777777


Q ss_pred             CCEEc
Q 007143          432 HSKVS  436 (616)
Q Consensus       432 ~~~v~  436 (616)
                      .+.|-
T Consensus       211 ~t~i~  215 (274)
T d3tdta_         211 STRIY  215 (274)
T ss_dssp             TCCEE
T ss_pred             cccce
Confidence            66664

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=1.1e-10  Score=112.43  Aligned_cols=114  Identities=17%  Similarity=0.248  Sum_probs=76.7

Q ss_pred             EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143           31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE  109 (616)
Q Consensus        31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~  109 (616)
                      |||||||.|+||+.   .+||+|+||+|+|||+|+|+.+..+ ++++|+|+++....+.   +.....   ....+.++.
T Consensus         6 AIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~---~~~~~~---~~~~~~~~~   76 (221)
T d1vpaa_           6 AILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VEKRVF---HEKVLGIVE   76 (221)
T ss_dssp             EEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HHTTCC---CTTEEEEEE
T ss_pred             EEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhH---HHhhhc---ccccccccc
Confidence            79999999999974   6899999999999999999999997 5899988886543322   222111   123455555


Q ss_pred             CCCcc--CHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          110 SHNII--SAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       110 ~~~~~--~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .....  +...++..+   .....+ ++++.||.  +....+..+++.++..
T Consensus        77 ~~~~~~~s~~~~~~~~---~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~  125 (221)
T d1vpaa_          77 GGDTRSQSVRSALEFL---EKFSPSYVLVHDSARPFLRKKHVSEVLRRARET  125 (221)
T ss_dssp             CCSSHHHHHHHHHHHH---GGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHH---HhcCCCcEEEeccccccccHHHHHhhhhhhccc
Confidence            43321  222233222   112334 88899998  4556788888887764

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=1.6e-10  Score=107.00  Aligned_cols=95  Identities=14%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe----ceEECCCCEECCCcEEec----------------eEECCC
Q 007143          344 SFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE----GSYIWDNVIIEDGCELRH----------------VIVCDG  402 (616)
Q Consensus       344 ~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~----~s~I~~~v~Ig~~~~I~~----------------siIg~~  402 (616)
                      .+..||++|.|+++++| ++++||++|.||++|+|.    ...|++++.++.++.+..                ..+...
T Consensus         9 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG   88 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred             CCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeee
Confidence            44556666666666666 477888888888888885    456888888888877632                233347


Q ss_pred             cEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143          403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL  438 (616)
Q Consensus       403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~  438 (616)
                      +.||++++|+.+|+|+++|+||++++|+++++|+..
T Consensus        89 ~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~  124 (173)
T d1v3wa_          89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPN  124 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred             eecCCcccccceeeecCCEEEcceeEEcCCcEEeCC
Confidence            889999999999999999999999999999999763

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.2e-10  Score=107.19  Aligned_cols=62  Identities=23%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             CCCEECCCCEEeceEECCCCEECCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143          367 EGCTIGSNVLIEGSYIWDNVIIEDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV  428 (616)
Q Consensus       367 ~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~  428 (616)
                      +++.|+..+.+.++.+++++.++.++...        +++|+++|+||.++.|.+++.||++++||++++
T Consensus       106 ~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~Igagsv  175 (201)
T d2oi6a1         106 KGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT  175 (201)
T ss_dssp             TTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCE
T ss_pred             CCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCE
Confidence            33333333333334444455555444332        245555555555555555555555555555544

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.8e-11  Score=116.56  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      |.+.|||||+|.|+||+.   .+||+|+||+|+|||+|+|+.+.++ ++++|+|++++....+..+.....      ..+
T Consensus         2 M~i~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~------~~v   72 (225)
T d1i52a_           2 LDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH------PQI   72 (225)
T ss_dssp             CCEEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC------TTE
T ss_pred             CCEEEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc------ccc
Confidence            457899999999999984   7899999999999999999999988 689999999876544444332211      224


Q ss_pred             EEEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCce--ecchhHHHHHHHHH
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHK  154 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~--i~~~~l~~~l~~h~  154 (616)
                      .+....  .+..+++...  ...+. .+ +++..+|.  +....+..++....
T Consensus        73 ~~~~~~--~~~~~sv~~~--~~~~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~  121 (225)
T d1i52a_          73 TVVDGG--DERADSVLAG--LKAAGDAQWVLVHDAARPCLHQDDLARLLALSE  121 (225)
T ss_dssp             EEEECC--SSHHHHHHHH--HHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGG
T ss_pred             ccccCC--cchhHHHHhh--hcccCccceeeeeccCCCCCCHHHHHHHHhhhh
Confidence            444332  2445565543  33454 44 55556775  44556666665544

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.07  E-value=4e-10  Score=108.84  Aligned_cols=118  Identities=16%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i  105 (616)
                      .+.+||||||.|+||+.   .+||+|+||+|+|||+|+|+.+..++ +++|+|++.... +.++++...      .+..+
T Consensus         4 ~i~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~------~~~~~   74 (226)
T d1w77a1           4 SVSVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES------IDVDL   74 (226)
T ss_dssp             CEEEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTS------CSSEE
T ss_pred             ceEEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhhhhhccccc------ccccc
Confidence            47899999999999985   78999999999999999999999984 788888887443 334433322      13456


Q ss_pred             EEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       106 ~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .++....  ...++++.....-....+ +|+..||.  +....+..+++.++..
T Consensus        75 ~~~~gg~--~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~  126 (226)
T d1w77a1          75 RFAIPGK--ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV  126 (226)
T ss_dssp             EEECCCS--SHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred             ccccccc--hhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhcc
Confidence            6654322  234444433222112345 66667887  5556788888887764

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.06  E-value=5.9e-11  Score=113.12  Aligned_cols=115  Identities=16%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             eeecceEEcCCcEECCCCEECC-CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---ceEECCCCEECCC------
Q 007143          323 LERRGMYRALEIEQSRSAQVGS-FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDG------  391 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~-~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~------  391 (616)
                      +..+.+.+++++.|++.++|+. ...++..+.+++++.|. ++.||++|.||++|+|.   ...+++++.+...      
T Consensus        19 ~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~   98 (203)
T d1mr7a_          19 FIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGW   98 (203)
T ss_dssp             EHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTG
T ss_pred             EECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccc
Confidence            3445555666777777777754 33444677788888775 68899999999999883   3344444443221      


Q ss_pred             ---------cEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143          392 ---------CEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL  437 (616)
Q Consensus       392 ---------~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~  437 (616)
                               +.+ ..++||++|+||.+|+|.+|+.||++|+||++++|    ++++++..
T Consensus        99 ~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G  158 (203)
T d1mr7a_          99 EKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGG  158 (203)
T ss_dssp             GGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEE
T ss_pred             cCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEE
Confidence                     111 23556666666666666666666666666666653    44444443

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.01  E-value=1.7e-09  Score=104.67  Aligned_cols=92  Identities=26%  Similarity=0.351  Sum_probs=58.1

Q ss_pred             eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143          323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC  392 (616)
Q Consensus       323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~  392 (616)
                      ..|.+.|+++++.+.| ++|.-+++||++|.|..+++|+ .+.||++|+|+.++.|.+         ++|+++|.||.+|
T Consensus       110 ~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s  188 (274)
T d3tdta_         110 TVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARS  188 (274)
T ss_dssp             EEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTC
T ss_pred             eeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCc
Confidence            4566777777776664 5777777777777777777776 457777777777777753         3466666666666


Q ss_pred             EEeceEECCCcEECCCCEECCCCEECCC
Q 007143          393 ELRHVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      .|     -.+++||.+++|+.|++|+..
T Consensus       189 ~v-----~egv~Vg~~avi~~gv~i~~~  211 (274)
T d3tdta_         189 EV-----VEGVIVEEGSVISMGVYLGQS  211 (274)
T ss_dssp             EE-----CTTCEECTTCEECTTCEECTT
T ss_pred             eE-----ecCEEecCceEeccceEEecc
Confidence            55     334444444444444444443

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.4e-10  Score=104.74  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      .+.|||||||.|+||+.    .||+|+|++|+|||+|+++.+... +.+|+|+++.+.+....   .       ++.+..
T Consensus         3 ~i~~iILAgG~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~~---~-------~~~v~~   67 (188)
T d1e5ka_           3 TITGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIYQA---S-------GLKVIE   67 (188)
T ss_dssp             SEEEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHHHHT---T-------SCCEEC
T ss_pred             ceeEEEEcCCCCcCCCC----CCcccCEECCEehhHHHHhhhccc-ccccccccCccHHhhhh---c-------CCCccc
Confidence            37899999999999982    389999999999999999999887 57788888776543321   0       123332


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHH
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQ  151 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~  151 (616)
                      .......+...++..+  ......+ +++++||+  +....+..+++
T Consensus        68 d~~~~~~~~~~g~~~~--~~~~~~~~vlv~~~D~P~i~~~~i~~L~~  112 (188)
T d1e5ka_          68 DSLADYPGPLAGMLSV--MQQEAGEWFLFCPCDTPYIPPDLAARLNH  112 (188)
T ss_dssp             CCTTCCCSHHHHHHHH--HHHCCSSEEEEEETTCTTCCTTHHHHHHH
T ss_pred             cccccccchhHHHHHH--HHhcccceEEEeccCCCCCCHHHHHHHHH
Confidence            2222223333333222  1123445 99999999  44445555554

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.00  E-value=3.3e-10  Score=109.33  Aligned_cols=120  Identities=11%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.-|||||||.|+||+.   .+||+|++|+|+|||+|+|+.+.+++ +++|+|++... +.+.+++....-     ..+.
T Consensus         3 K~iAIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~-----~~~~   73 (226)
T d1vgwa_           3 KNIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFP-----QVRV   73 (226)
T ss_dssp             CEEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCT-----TSEE
T ss_pred             ceEEEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchh-hhhhhhhccccc-----ceee
Confidence            35699999999999973   67999999999999999999999986 56776666543 344444443211     1122


Q ss_pred             EEeCC--CccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          107 TIESH--NIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       107 ~i~~~--~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      ++...  ...+...++..+...... ..+ +++..||.  +....+..+++.+...
T Consensus        74 ~~~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~  129 (226)
T d1vgwa_          74 WKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNA  129 (226)
T ss_dssp             ECCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTC
T ss_pred             ccccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccc
Confidence            22211  123455556555433222 345 66667876  5566788999888764

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=98.95  E-value=3.9e-08  Score=95.32  Aligned_cols=238  Identities=14%  Similarity=0.118  Sum_probs=135.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      +-|||+|-|.++|+-      -|.|.+|+|+|||+|+++.+..+++++|+|.+..  +.+.++..+.      +..+.+.
T Consensus         2 ~i~iIpAR~gSkrip------~KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~--~~i~~~~~~~------g~~v~~~   67 (246)
T d1vh1a_           2 FVVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATDH--EDVARAVEAA------GGEVCMT   67 (246)
T ss_dssp             CEEEEECCCCCC--C------CTTTCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT------TCEEEEC
T ss_pred             EEEEEecCCCCcCCC------CchhhhcCCccHHHHHHHHHHHcCCCcEEEEecC--ccccchhhcc------cccceee
Confidence            468999999989874      3999999999999999999999999999888864  5666666552      3456555


Q ss_pred             eCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          109 ESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      ......++..+...+.....-..+ ++.+.||.  +....+..+++.+....    ...++.+.....      ...+..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~----~~~~~~~~~~~~------~~~~~~  137 (246)
T d1vh1a_          68 RADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ----VGMATLAVPIHN------AEEAFN  137 (246)
T ss_dssp             C-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSS----SSEEEEEEECCC------HHHHTC
T ss_pred             cccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccc----cccccccccccc------hhcccC
Confidence            444444555554443322111233 77888998  34457888888887753    233333333221      112211


Q ss_pred             -CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHH-Hhhh
Q 007143          186 -DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRR-HFVK  263 (616)
Q Consensus       186 -~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~-dfv~  263 (616)
                       ...-+..+ ..++++.+...+.+...      .............-+..+|||++.+..|..+..-.. ..+.. ..+.
T Consensus       138 ~~~vk~v~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~-s~~E~~e~le  209 (246)
T d1vh1a_         138 PNAVKVVLD-AEGYALYFSRATIPWDR------DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQP-SPLEHIEMLE  209 (246)
T ss_dssp             TTSCEEEEC-TTSBEEEEESSCSSCCH------HHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCC-CHHHHHHTCT
T ss_pred             CCcceeeec-ccCcccccccccchhhh------hhhhhhhhccchhhheecceeeechhhhhhhccCCC-ChHHHHHhHH
Confidence             11223444 46788887765442211      111000000011233457899999998875543211 01100 0000


Q ss_pred             hhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          264 GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       264 ~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                       .+.-.-.|.+|+++..++....+|+++.++..|-+
T Consensus       210 -~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k  244 (246)
T d1vh1a_         210 -QLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA  244 (246)
T ss_dssp             -THHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred             -HHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence             00001158899999988666779999999876643

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.7e-09  Score=100.93  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             EECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143          364 VIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERF  427 (616)
Q Consensus       364 ~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~  427 (616)
                      .||++|.|+.+|+|.   ...||++|.|+.+|.|.+             +.++..++||++|+|+.+|+|.+||+||+++
T Consensus        74 ~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~  153 (182)
T d1ocxa_          74 FLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNV  153 (182)
T ss_dssp             EECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTC
T ss_pred             eECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCC
Confidence            334444444444442   225777777777777642             4677788999999999999999999999999


Q ss_pred             EECCCCEEcc
Q 007143          428 VVPAHSKVSL  437 (616)
Q Consensus       428 ~v~~~~~v~~  437 (616)
                      +|++|++|+.
T Consensus       154 vIgagsvV~k  163 (182)
T d1ocxa_         154 VVASGAVVTK  163 (182)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcc
Confidence            9999999975

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=3.6e-08  Score=95.82  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=135.5

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI  108 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i  108 (616)
                      +-|||+|-|.++|+-      -|.|.+|+|+|||+|+++.+..+++++|+|.+..  +++.+...+.      +..+.+.
T Consensus         2 ~~~iIpAR~gSkRlp------~Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~~~------~~~~~~~   67 (255)
T d1vica_           2 FTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF------GAEVCMT   67 (255)
T ss_dssp             CEEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT------TCEEEEC
T ss_pred             EEEEEecCCCCCCCC------CchhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCC--cccchhhhhh------cccccee
Confidence            468999988888873      3999999999999999999999999998887764  3455554442      3455555


Q ss_pred             eCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143          109 ESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT  185 (616)
Q Consensus       109 ~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~  185 (616)
                      ......++..+...+.....-..+ ++++.||.  +....+..+++.+....    ...+........+.     .....
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~----~~~~~~~~~~~~~~-----~~~~~  138 (255)
T d1vica_          68 SVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN----VNMASLAVKIHDAE-----ELFNP  138 (255)
T ss_dssp             CCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHT----CSEEEEEEECCCHH-----HHTCT
T ss_pred             eeccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhhhccccc----ccccceeeeccchh-----hccCc
Confidence            544444555555543322222334 67788998  33457888888888764    22222333222211     11111


Q ss_pred             CceEEEEeCCCCeEEEeeecCCCCCcc-eEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143          186 DELFMAIDPNTKQLLYYEDKADHSKGT-ICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG  264 (616)
Q Consensus       186 ~~~vv~id~~~~rvl~~~e~p~~~~~~-~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~  264 (616)
                      .......+ +.+++..+...+...... +...........   -..-....|+|++.+..+..+.....- .+..  ...
T Consensus       139 ~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~~~~-~le~--~e~  211 (255)
T d1vica_         139 NAVKVLTD-KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQL---SDAYLRHIGIYAYRAGFIKQYVQWAPT-QLEN--LEK  211 (255)
T ss_dssp             TSCEEEEC-TTSBEEEEESSCSSCCHHHHTTCSCGGGCCC---CTTCEEEEEEEEEEHHHHHHHHHSCCC-HHHH--HHT
T ss_pred             cceeeeec-cCCcccccccccccccchhhhhccchhhccc---ccchheeeeeecccHHHHhhhhccCCC-hhHH--HHh
Confidence            11223343 567777777655321100 000000000000   011223568999999988766432211 0000  000


Q ss_pred             h--hhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143          265 L--LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       265 ~--l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                      +  +.-.-.|.+|..+..++..+.+|+|++++..|.
T Consensus       212 le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae  247 (255)
T d1vica_         212 LEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVR  247 (255)
T ss_dssp             CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHH
T ss_pred             HHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHH
Confidence            0  000115789998888755677999999988774

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=1.1e-09  Score=104.40  Aligned_cols=79  Identities=22%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             eceEECCCCEECCCCEEe----ceEECCCCEECCCcE----------------EeceEECCCcEECCCCEECCCCEECCC
Q 007143          361 SDSVIGEGCTIGSNVLIE----GSYIWDNVIIEDGCE----------------LRHVIVCDGVIMKAGAVLKPGVVLSFK  420 (616)
Q Consensus       361 ~~s~IG~~~~Ig~~~~I~----~s~I~~~v~Ig~~~~----------------I~~siIg~~v~Ig~~~~I~~g~vIg~~  420 (616)
                      .+++||++|.|+++|+|.    ...+.+++.+...+.                ..+++||++|+||.+|.|.+|+.||++
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~  132 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHG  132 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             CeeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCCeEeCCC
Confidence            357889999998888873    223333333332221                123667777777777777777777777


Q ss_pred             cEECCCCEE----CCCCEEcccc
Q 007143          421 VVIGERFVV----PAHSKVSLLQ  439 (616)
Q Consensus       421 v~Ig~~~~v----~~~~~v~~~~  439 (616)
                      |+||++++|    |+++++...|
T Consensus       133 ~vIgagSvVtkdvp~~si~~G~P  155 (208)
T d1xata_         133 AIIGSRALVTGDVEPYAIVGGNP  155 (208)
T ss_dssp             CEECTTCEECSCBCTTEEEETTT
T ss_pred             CEEeCceEEeecCCcCcEEEecC
Confidence            777777664    4555555443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.84  E-value=6.4e-09  Score=101.16  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             ceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143          396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ  439 (616)
Q Consensus       396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~  439 (616)
                      +.+||++|+||.|++|..|+.||++++||+|++    ||+++++...|
T Consensus       189 ~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdVp~~~vv~G~P  236 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVP  236 (241)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTT
T ss_pred             CCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCCCCCCCEEEecC
Confidence            466788888888888888888888888888887    56777776654

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=98.79  E-value=7.4e-09  Score=98.33  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      +.+||||||.|+||+.   +.||+|++++|+|||+|+++.+.... +++|+|++. ..+.++.+.          -.+.+
T Consensus         2 is~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~-~~~~~~~~~----------~~~~~   67 (205)
T d1w55a1           2 MSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFT----------KNYEF   67 (205)
T ss_dssp             EEEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTC----------SSSEE
T ss_pred             eEEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhccccccccccc-ccccccccc----------ccccc
Confidence            6789999999999985   68999999999999999999999875 677766654 334333221          12344


Q ss_pred             EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143          108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE  155 (616)
Q Consensus       108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~  155 (616)
                      +....  +-.++++  .+...+..+ +|+..||.  +....+..+++.+++
T Consensus        68 v~Gg~--~r~~Sv~--~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~  114 (205)
T d1w55a1          68 IEGGD--TRAESLK--KALELIDSEFVMVSDVARVLVSKNLFDRLIENLDK  114 (205)
T ss_dssp             EECCS--SHHHHHH--HHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGG
T ss_pred             ccccc--chhhhhh--hhhhhhhhcceeeeccCcccCcHHHHHHHHhhhhc
Confidence            44322  1123333  234456777 45556988  555677888876554

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.78  E-value=8.6e-10  Score=104.86  Aligned_cols=39  Identities=26%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      +...++||++|+|+.+|+|.++++||++++|+++++|+.
T Consensus       110 i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_         110 IKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence            445799999999999999999999999999999999975

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=98.77  E-value=2e-07  Score=89.89  Aligned_cols=230  Identities=15%  Similarity=0.117  Sum_probs=129.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143           28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK  106 (616)
Q Consensus        28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~  106 (616)
                      +.-|||+|-+.++|+.      -|+|++|+|+|||+|+++.+..+ ++++|+|.+..  +.+.......      +..+.
T Consensus         2 k~i~iIpAR~~SkRl~------~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~~~------~~~~~   67 (245)
T d1h7ea_           2 KAVIVIPARYGSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF------GGKAI   67 (245)
T ss_dssp             CEEEEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT------TCEEE
T ss_pred             CEEEEEcCCCCCcCCC------CccccccCCccHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhhhc------CceEE
Confidence            3568999989899974      49999999999999999999987 67888777654  3444444431      23444


Q ss_pred             EEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143          107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL  183 (616)
Q Consensus       107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~  183 (616)
                      +.......+++..+.   +...+..| |+++.||.  +....+..+++.+....   .....++.......       .+
T Consensus        68 ~~~~~~~~~~~~~~~---~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~  134 (245)
T d1h7ea_          68 MTRNDHESGTDRLVE---VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDP---ALPVATLCHAISAA-------EA  134 (245)
T ss_dssp             ECCSCCSSHHHHHHH---HHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCT---TCCEEEEEEEECHH-------HH
T ss_pred             EecCccccccHHHHH---HHHhcCCCEEEEecchhhhcccccchhhhhcccccc---cccccccccccccc-------cc
Confidence            333222222332222   33446667 66788888  33457888888887643   12222322222110       11


Q ss_pred             CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhh
Q 007143          184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVK  263 (616)
Q Consensus       184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~  263 (616)
                      .....+.......+..+.+...+......      ...       ......+|+|.++++++..+........-+...+.
T Consensus       135 ~~~~~vk~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie  201 (245)
T d1h7ea_         135 AEPSTVKVVVNTRQDALYFSRSPIPYPRN------AEK-------ARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLE  201 (245)
T ss_dssp             TCTTSCEEEECTTCBEEEEESSCSSCCTT------GGG-------CCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCT
T ss_pred             cCCcceeeccchhhhhhhhhhhhhhhhhc------ccc-------cccceeeeeEEeeeccccccccccCChhhhhhhHH
Confidence            11111223333456666766654421100      000       01233468999999988876542211100111111


Q ss_pred             hhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143          264 GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK  299 (616)
Q Consensus       264 ~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~  299 (616)
                      . +.-.-.|.+|++...+ ..+.+|+++++|..|..
T Consensus       202 ~-lr~l~ng~~I~~~~~~-~~~~~IDt~~Dl~~a~~  235 (245)
T d1h7ea_         202 Q-LRLMNAGINIRTFEVA-ATGPGVDTPACLEKVRA  235 (245)
T ss_dssp             T-HHHHHTTCCEEEEECC-CCCCCSSSHHHHHHHHH
T ss_pred             H-HHHHHCCCeEEEEEeC-CCCCCCCCHHHHHHHHH
Confidence            0 1101157889988876 56678999999987743

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.60  E-value=2.6e-07  Score=87.59  Aligned_cols=209  Identities=12%  Similarity=0.073  Sum_probs=118.5

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143           29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT  107 (616)
Q Consensus        29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~  107 (616)
                      --|||+|.+.++|| |     .|+|+||+|+|||+|+|+.+..++ +++|+|.+.  .+.+.+.+...      +..+..
T Consensus         5 ~iaiIpar~~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~~~~------~~~~~~   70 (225)
T d1eyra_           5 NIAVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKNF------GVEVVL   70 (225)
T ss_dssp             EEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT------TCEEEE
T ss_pred             EEEEEccCCCCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeec--cchhhhhhhhh------cceeee
Confidence            34899999999998 5     699999999999999999999997 577766554  35555555542      233322


Q ss_pred             EeC---CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143          108 IES---HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS  181 (616)
Q Consensus       108 i~~---~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~  181 (616)
                      ...   ....++.+.++.+........+ ++++.||.  +....+..+++.+....   .+..++.......|      -
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~---~d~~~~~~~~~~~~------~  141 (225)
T d1eyra_          71 RPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKI---KGSVVSACPMEHHP------L  141 (225)
T ss_dssp             CCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTT---CCCEEEEEECSSCT------T
T ss_pred             eccccccccccchhhccccccccccccceEEEeeccccccccccccccceeecccc---ccccceeecccccc------c
Confidence            211   1223444555544322223334 88889998  44457888888766542   23444443332211      1


Q ss_pred             ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHh
Q 007143          182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF  261 (616)
Q Consensus       182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~df  261 (616)
                      + .    ++..+  .+.+..+..........        ...+..    -..+.++|++.++.+.-..            
T Consensus       142 ~-~----~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~----y~~~g~iy~~~~~~l~~~~------------  190 (225)
T d1eyra_         142 K-T----LLQIN--NGEYAPMRHLSDLEQPR--------QQLPQA----FRPNGAIYINDTASLIANN------------  190 (225)
T ss_dssp             S-C----EEECS--SSCEEESSCGGGGTSCG--------GGSCCE----EEEEEEEEEEEHHHHHHHT------------
T ss_pred             c-c----ccccc--ccccccccccccccccc--------ccCcce----eeecceeEEeeHHHHHHcC------------
Confidence            1 1    23332  34343333221100000        001110    1224568887766442211            


Q ss_pred             hhhhhhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143          262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS  298 (616)
Q Consensus       262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~  298 (616)
                             ...+.++..++++.....+|++.+++..|.
T Consensus       191 -------~~~~~~~~~~~i~~~~~~dIdt~eDl~~ae  220 (225)
T d1eyra_         191 -------CFFIAPTKLYIMSHQDSIDIDTELDLQQAE  220 (225)
T ss_dssp             -------SSCCSSCEEEECCTTTTCCCCSHHHHHHHH
T ss_pred             -------CccCCCeEEEEcCccceECCCCHHHHHHHH
Confidence                   124566777788766778999999988764

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.48  E-value=2e-07  Score=90.35  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ...+||++++|+.|++|-.+++||++++|++|++|..
T Consensus       188 ~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~k  224 (241)
T d1ssqa_         188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLN  224 (241)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             CCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECC
Confidence            4577888888888888777888888888888888875

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.41  E-value=1e-06  Score=88.94  Aligned_cols=21  Identities=10%  Similarity=0.249  Sum_probs=10.1

Q ss_pred             hhccChhhHHHHhhhhhcccc
Q 007143          286 ARIDNYRSYDIVSKDIIQRWT  306 (616)
Q Consensus       286 ~~V~s~~sY~~a~~dil~r~~  306 (616)
                      .||.-++++..+..--|..|.
T Consensus        25 ~~~~a~~~~~~~~~~~~gg~~   45 (320)
T d2f9ca1          25 RQVIAVTDFNDVKAGTSGGWV   45 (320)
T ss_dssp             EEEEECSCCSSSCTTCEEEEE
T ss_pred             EEEEEeecccccccCCCCcee
Confidence            444444554444444455554

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.4e-06  Score=81.02  Aligned_cols=115  Identities=20%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV  105 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i  105 (616)
                      +++-|||+|.+.++|| |     -|.|++|+|+|||+|+++.+.+++ +++|+|.+..  +.+.+.....      +..+
T Consensus         2 ~ki~aiIpaR~~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~--~~i~~~~~~~------~~~~   67 (228)
T d1qwja_           2 PHLAALVLARGGSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH--DEIENVAKQF------GAQV   67 (228)
T ss_dssp             CCEEEEEECCSCCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHT------TCEE
T ss_pred             CCEEEEeccCCCCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecch--hhhhhhhhhc------Cccc
Confidence            4688999999999999 5     599999999999999999999986 6777666543  4455555431      2233


Q ss_pred             EEEeC---CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143          106 KTIES---HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER  156 (616)
Q Consensus       106 ~~i~~---~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~  156 (616)
                      .....   ....+.-+++..+.... ...+ ++++.+|.  +...++..+++.++..
T Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~  123 (228)
T d1qwja_          68 HRRSSETSKDSSTSLDAIVEFLNYH-NEVDIVGNIQATSPCLHPTDLQKVAEMIREE  123 (228)
T ss_dssp             EECCGGGSSTTCCHHHHHHHHHTTC-TTCSEEEEECTTCTTCCHHHHHHHHHHHHSS
T ss_pred             cccccccccccchhhhhhhhccccc-cccceeeeecccccccCchhhhhhhhhhhcc
Confidence            22211   12234556666544322 2234 77778988  4455789999888753

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=3.3e-07  Score=86.83  Aligned_cols=38  Identities=8%  Similarity=0.118  Sum_probs=35.0

Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143          400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL  437 (616)
Q Consensus       400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~  437 (616)
                      ..+++||++|+|+.+|+|.++++||++++|+++++|+.
T Consensus       106 ~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtk  143 (208)
T d1xata_         106 AGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  143 (208)
T ss_dssp             CCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEee
Confidence            34689999999999999999999999999999999985

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.04  E-value=1.1e-05  Score=81.03  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143          327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL  394 (616)
Q Consensus       327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I  394 (616)
                      +..+..++.|.+.+.|++++.||+++.|+ ++.| .++.|+++|.|++++.+.++.+..++.|..++.|
T Consensus        69 ~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i  136 (320)
T d2f9ca1          69 GTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI  136 (320)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEE
T ss_pred             CCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEE
Confidence            33444444444444444445555555444 3334 2455555555555555555555555555555554

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=4.6e-05  Score=77.93  Aligned_cols=192  Identities=11%  Similarity=0.141  Sum_probs=119.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHH----CCCc-EEEEEcCCc-HHHHHHHHHhcCCCC
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEA----AGVA-EVFVFCCAH-SKQVIDYLENSEWFS   99 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~----~Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~   99 (616)
                      .++-+|+||||.||||+-   ..||.++||+ |+++++..++.+..    .|+. -++|.++.. .+.+.+|+++..|. 
T Consensus        73 ~kvavv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f-  148 (378)
T d2icya2          73 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS-  148 (378)
T ss_dssp             TTEEEEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS-
T ss_pred             CCEEEEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC-
Confidence            467899999999999874   7899999997 79999999999875    2432 477888754 67889999885543 


Q ss_pred             CCCcEEEEEeCC------------------------CccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhHHH
Q 007143          100 QPNFTVKTIESH------------------------NIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQ  148 (616)
Q Consensus       100 ~~~~~i~~i~~~------------------------~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~  148 (616)
                        ++.|+++.+.                        .+-|-|+..+.+....++.     + . +.+.+.|.+..+.--.
T Consensus       149 --g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~  226 (378)
T d2icya2         149 --NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT  226 (378)
T ss_dssp             --SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred             --CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence              3344443220                        1348899888775544432     2 2 7888889976554456


Q ss_pred             HHHHHHHhhccCCCceEEEEEecC-CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceE
Q 007143          149 ALQEHKERKKKDNNAVMTMIIKKS-KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSIS  227 (616)
Q Consensus       149 ~l~~h~~~~~~d~~a~mT~v~~~~-~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~  227 (616)
                      ++-.|..+     ++.+++-+.+. .+.     .+-|   .++..| ..-+|+.|.+.|...       .+.|.....  
T Consensus       227 ~lG~~~~~-----~~~~~~kvv~Kt~~d-----ek~G---~l~~~d-g~~~vvEyse~p~e~-------~~~~~~~~~--  283 (378)
T d2icya2         227 ILKHLIQN-----KNEYCMEVTPKTLAD-----VKGG---TLISYE-GKVQLLEIAQVPDEH-------VNEFKSIEK--  283 (378)
T ss_dssp             HHHHHHHH-----TCSEEEEEEECCTTC-----CSSC---EEEEET-TEEEEECGGGSCGGG-------HHHHHSSSS--
T ss_pred             HHHHHHhc-----CCcceeEEEecCCCC-----Ccee---EEEEEC-CceeeeehhcCChhH-------HhhhcCCcC--
Confidence            67777775     35555544432 221     1223   233333 456788888876521       112222211  


Q ss_pred             EEeccccceeEeeCHhHHhhhh
Q 007143          228 LHNDKQDCYIDICSPEVLSLFT  249 (616)
Q Consensus       228 ir~dl~d~gIyIcsp~vl~lf~  249 (616)
                        ..+.+++..+++-..+..+.
T Consensus       284 --~~~~N~nn~~~~l~~l~~~~  303 (378)
T d2icya2         284 --FKIFNTNNLWVNLKAIKKLV  303 (378)
T ss_dssp             --CCEEEEEEEEEEHHHHHHHH
T ss_pred             --cceeeeeeeeeeHHHHHHHH
Confidence              12235666677766666443

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=96.64  E-value=0.014  Score=61.07  Aligned_cols=164  Identities=12%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCCCCCccccee---CCeehHHHHHHHHHHC----------CC-cEEEEEcCCc-HHHHHHH
Q 007143           27 QPLQAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEAA----------GV-AEVFVFCCAH-SKQVIDY   91 (616)
Q Consensus        27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi---~g~PlI~y~Le~L~~~----------Gv-~eI~vv~~~~-~~~i~~~   91 (616)
                      .++-+|+||+|.||||+-   ..||.++||   .++++++..++.+...          ++ --++|+++.. .+.+++|
T Consensus       101 gkvavvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~  177 (501)
T d1jv1a_         101 NKVAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEF  177 (501)
T ss_dssp             TCEEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHH
T ss_pred             CCEEEEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHH
Confidence            468899999999999974   779999998   3799999998887662          22 2477888755 6889999


Q ss_pred             HHhcCCCCCCCcEEEEEeC--------C-------------CccCHHHHHHHHHhccccc-----C-C-EEEEeCceec-
Q 007143           92 LENSEWFSQPNFTVKTIES--------H-------------NIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVS-  142 (616)
Q Consensus        92 l~~~~~~~~~~~~i~~i~~--------~-------------~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~-  142 (616)
                      +++..|.....-.|.+..+        +             .+-|-|+..+.+.....+.     + . +.+...|.+. 
T Consensus       178 l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~  257 (501)
T d1jv1a_         178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (501)
T ss_dssp             HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             HHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence            9886554221112332221        1             2358888888776554432     2 3 6666667643 


Q ss_pred             chhHHHHHHHHHHhhccCCCceEEEEEec-CCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143          143 NMLLTQALQEHKERKKKDNNAVMTMIIKK-SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD  207 (616)
Q Consensus       143 ~~~l~~~l~~h~~~~~~d~~a~mT~v~~~-~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~  207 (616)
                      ..---.++-.|..+     ++.+.+-+.+ ..+.     .+-|    ++......-+|+.|.+.|.
T Consensus       258 ~~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~-----e~~G----~l~~~dg~~~vvEysel~~  309 (501)
T d1jv1a_         258 KVADPRFIGFCIQK-----GADCGAKVVEKTNPT-----EPVG----VVCRVDGVYQVVEYSEISL  309 (501)
T ss_dssp             CTTCHHHHHHHHHT-----TCSEEEEEEECCSTT-----CSCC----EEEEETTEEEEECGGGSCH
T ss_pred             cccCHHHHHHHHhc-----ccceeEEEEEcCCCC-----cccc----eEEEECCeEEEEEeccCCH
Confidence            33223456666664     3444443333 2221     1233    3433223455677776553