Citrus Sinensis ID: 007146

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------

MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

ccccHHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccEEccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHcccc

cccHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEHHHHEEEccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccccccccEEcccHHHccHHHHHHHHHHHHccHHHEcccccHHHHHHHHHHccHHHHHEccc

MAYGGLQEFLREQKSEFTANlvrsrvlplysvsVCLPYLVASANWILGELasclpedisADVYSSLLKALQMldkgdtscypvrASAAGAIVGLlendymppewypLLQVIVGRIGYEDEENSILFELLSSVVGaanenvadhIPYIVSSLVAAISkhmhpssepwpQVVERGFAALALMAQSWENFLREEVEldqssgkweSGQAAIAKAFSALLQQAWLThiqplecevsappsciddssMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWhaweetedlsvFDCIKEIVNLHSKYELKNFIvrqmppppappvppqsiIEGIGAFLSEAILqypsatwracscvhtllhvpkysfetegvkqSLTISFSCAAFSRfraiqskpsslwkPVVLAISSCYLCYPAVVEGILkkdedggfaLWGSALAFLcsssleprlslESEIKLAVLTLAKVVERLLglgnpgsslLQDCYASLMEAAVQLKEvqedeendegddeeaedkeddneesedddedsegdeceeTEEEFLERYAKAAVNLenntlveegdvedqehdielgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKevqedeendegddeeaedkeddneesedddedsegdeCEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIelgsldevdQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMppppappvppQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCsssleprlsleseIKLAVLTLAKVVERllglgnpgssllQDCYASLMEAAVQLKEVQedeendegddeeaedkeddneesedddedsegdeceeteeeFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

***************EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH***EPWPQVVERGFAALALMAQSWENFLREEVELD***GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV***************IIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV***************************************************YAKAAVNL*****************IELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLL**

**YGG*QEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ**********************QAAIAKAFSALLQQAWLTHIQP**********CIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFI*******************GIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLC*********LESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV*******************************************TEEEFLERYAKAAVN**************QEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS*********WPQVVERGFAALALMAQSWENFLREEV***********GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLK********************************************FLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

*AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR*****DQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQE*********************************CEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQxxxxxxxxxxxxxxxxxxxxxEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKFLKAYPQLTYLLLHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		616
449441658		1085	PREDICTED: uncharacterized protein LOC10	0.985	0.559	0.587	0.0
356565000		1104	PREDICTED: uncharacterized protein LOC10	0.977	0.545	0.591	0.0
449527855		595	PREDICTED: uncharacterized LOC101224751,	0.920	0.952	0.600	0.0
356521695		1094	PREDICTED: uncharacterized protein LOC10	0.978	0.551	0.586	1e-179
357479125		650	hypothetical protein MTR_4g123670 [Medic	0.970	0.92	0.581	1e-177
297736792		1047	unnamed protein product [Vitis vinifera]	0.840	0.494	0.624	1e-165
297834642		1091	protein transporter [Arabidopsis lyrata	0.980	0.553	0.524	1e-162
359477639		824	PREDICTED: uncharacterized protein LOC10	0.819	0.612	0.620	1e-161
255556524		965	protein transporter, putative [Ricinus c	0.732	0.467	0.658	1e-160
145338625		1090	armadillo/beta-catenin-like repeats-cont	0.978	0.553	0.522	1e-159

>gi\|449441658\|ref\|XP_004138599.1\| PREDICTED: uncharacterized protein LOC101205180 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/613 (58%), Positives = 475/613 (77%), Gaps = 6/613 (0%)

Query: 1    MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA 60
            + YGGL +FLREQ+  + A L+R+RVLPLY+++ CLPYL+AS+NW+LGELASCLPE++ A
Sbjct: 475  IGYGGLLDFLREQQPGYVAFLIRTRVLPLYAMTTCLPYLIASSNWVLGELASCLPEEVCA 534

Query: 61   DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDE 120
            + YSSL+KAL M DK + S YPVR SAAGAI  LLENDY+PPEW PLLQV++G +G +DE
Sbjct: 535  ETYSSLVKALSMPDK-EVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGVGQDDE 593

Query: 121  ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 180
            ENSILF+LLSS+V A NEN+  HIP++V SLV AISK + P+ EPWPQVVE GFAAL++M
Sbjct: 594  ENSILFQLLSSIVEAGNENIGIHIPHVVLSLVGAISKSIPPNLEPWPQVVEHGFAALSVM 653

Query: 181  AQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDD 240
            AQSWENF+ E++E D S  +  S QA I+++FS+LLQ+   +     + E   PPSCID 
Sbjct: 654  AQSWENFILEKIEQDASYERSTSDQATISRSFSSLLQEK--SEEMDDDREFLPPPSCIDH 711

Query: 241  SSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS 300
            SS LL+ I+LSV+E N I ELK+SEL+ VWADLI DWH+WEE+ED SVF+CI E+V L+S
Sbjct: 712  SSRLLQFIMLSVTESNTIVELKISELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNS 771

Query: 301  KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKY 360
            KY LKNF V+  P PPAPPVP +SI+E IGAF+++AI +Y SATW+ACSC+H LL+VP Y
Sbjct: 772  KYALKNFFVKSAPSPPAPPVPRRSIVENIGAFINQAISKYTSATWKACSCIHVLLNVPNY 831

Query: 361  SFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDE 420
            SFE EGVK+SL ++FS  +FSRFR IQ KPS+LWKP++L+IS+CY+C+P  VE IL+K +
Sbjct: 832  SFEVEGVKESLVVTFSQTSFSRFREIQGKPSALWKPLLLSISTCYICHPDTVERILEKFD 891

Query: 421  DGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYAS 480
             GGF +W SAL +LCSSS  P LS ESEIKL V+T AKV+ER++ LG P    L  C+ S
Sbjct: 892  GGGFTVWVSALGYLCSSSFAPGLSAESEIKLIVMTFAKVLERIIELGKPRDDFLWKCFGS 951

Query: 481  LMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAK 540
            LMEA++QLKEV+E++E +  ++EE E+ + D  E ++D +  E    EETEEEFL+RYAK
Sbjct: 952  LMEASIQLKEVREEKEEESDENEEEEEDDGDETEDDEDSDADEL---EETEEEFLDRYAK 1008

Query: 541  AAVNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLIS 600
            AA+ LEN++ +EEG+VED++ DIELG  +EVD+ +++ + +E+YH +++QGQ   S L  
Sbjct: 1009 AAIELENSSFIEEGNVEDEDQDIELGCFEEVDEGRIIYTLLEKYHPILIQGQGWPSDLPM 1068

Query: 601  KFLKAYPQLTYLL 613
            +FL AYP  T  L
Sbjct: 1069 RFLNAYPDYTAFL 1081

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356565000\|ref\|XP_003550733.1\| PREDICTED: uncharacterized protein LOC100782006 [Glycine max]	Back alignment and taxonomy information

>gi\|449527855\|ref\|XP_004170924.1\| PREDICTED: uncharacterized LOC101224751, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356521695\|ref\|XP_003529487.1\| PREDICTED: uncharacterized protein LOC100783023 [Glycine max]	Back alignment and taxonomy information

>gi\|357479125\|ref\|XP_003609848.1\| hypothetical protein MTR_4g123670 [Medicago truncatula] gi\|355510903\|gb\|AES92045.1\| hypothetical protein MTR_4g123670 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297736792\|emb\|CBI25993.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297834642\|ref\|XP_002885203.1\| protein transporter [Arabidopsis lyrata subsp. lyrata] gi\|297331043\|gb\|EFH61462.1\| protein transporter [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359477639\|ref\|XP_003632007.1\| PREDICTED: uncharacterized protein LOC100256169 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255556524\|ref\|XP_002519296.1\| protein transporter, putative [Ricinus communis] gi\|223541611\|gb\|EEF43160.1\| protein transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|145338625\|ref\|NP_188360.3\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi\|332642419\|gb\|AEE75940.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		616
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	8e-06
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	3e-05
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	6e-05
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-04
pfam09026		101	pfam09026, Cenp-B_dimeris, Centromere protein B di	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	2e-04
pfam03344		715	pfam03344, Daxx, Daxx Family	2e-04
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	2e-04
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	3e-04
pfam04546		211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	3e-04
TIGR01651		600	TIGR01651, CobT, cobaltochelatase, CobT subunit	3e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	4e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	5e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-04
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	6e-04
pfam05285		317	pfam05285, SDA1, SDA1	7e-04
pfam08553		794	pfam08553, VID27, VID27 cytoplasmic protein	7e-04
PRK14891		131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	8e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam04050		171	pfam04050, Upf2, Up-frameshift suppressor 2	0.001
pfam04889		241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.001
pfam12253		76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	0.001
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.001
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.002
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.002
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
PRK14160		211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.002
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.003
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.003
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.003
pfam09073		424	pfam09073, BUD22, BUD22	0.003
PTZ00248		319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.003
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.003
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.003
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.003
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.004
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.004
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.004
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
PHA02608		80	PHA02608, 67, prohead core protein; Provisional	0.004
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	0.004

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 488 LKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYAK 540
            +E ++DEE +  ++EE E+ + D ++SEDD+ +S+ +E  E E +  ER  K
Sbjct: 34  FEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKK 86

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region	Back alignment and domain information

>gnl\|CDD\|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|219900 pfam08553, VID27, VID27 cytoplasmic protein	Back alignment and domain information

>gnl\|CDD\|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217861 pfam04050, Upf2, Up-frameshift suppressor 2	Back alignment and domain information

>gnl\|CDD\|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein	Back alignment and domain information

>gnl\|CDD\|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|220102 pfam09073, BUD22, BUD22	Back alignment and domain information

>gnl\|CDD\|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|177433 PHA02608, 67, prohead core protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		616
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.16
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.14
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.13
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.33
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.91
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	96.58
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.53
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	96.53
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	96.46
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.75
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	95.73
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.59
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.53
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.28
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.66
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	94.61
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	93.82
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	92.83
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	92.82
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.73
PRK09687		280	putative lyase; Provisional	92.59
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	92.48
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	91.55
PTZ00429		746	beta-adaptin; Provisional	91.5
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.42
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	91.26
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	91.05
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	90.6
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	89.97
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.05
KOG1999		1024	consensus RNA polymerase II transcription elongati	88.9
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	88.13
PTZ00429		746	beta-adaptin; Provisional	87.8
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	87.13
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	87.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	86.41
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	84.44
PF05327		563	RRN3: RNA polymerase I specific transcription init	84.22
KOG3064		303	consensus RNA-binding nuclear protein (MAK16) cont	84.13

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.6e-71  Score=623.02  Aligned_cols=498  Identities=19%  Similarity=0.234  Sum_probs=402.1

Q ss_pred             ccchHHHHHHhhC--hHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhh--cCCccchHHHHHHHHHHHh-ccCCC
Q 007146            2 AYGGLQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS--CLPEDISADVYSSLLKALQ-MLDKG   76 (616)
Q Consensus         2 a~G~L~~~L~~~~--~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~--~~~e~~~~~~~~sll~~l~-dp~~~   76 (616)
                      ++|+|+++|.+.+  |.+++.|+++||||+|+  +++|||||||||++|+|++  |.+++++.++|+++++||. |++  
T Consensus       441 ~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~--  516 (1010)
T KOG1991|consen  441 MVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE--  516 (1010)
T ss_pred             HHHHHHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc--
Confidence            5799999999987  69999999999999999  9999999999999999997  9999999999999999999 775  


Q ss_pred             CCCcccchhhhhHHHHHHHhcCCCC-----CChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHH
Q 007146           77 DTSCYPVRASAAGAIVGLLENDYMP-----PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL  151 (616)
Q Consensus        77 ~~~~~PVRv~Aa~Ai~sll~~~~~p-----~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~l  151 (616)
                          +||||.||.||++||.|+..-     +-++|++|++.+.+.+-++|  .|..+|++||++|+|+++|||+.|||+|
T Consensus       517 ----lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End--~Lt~vme~iV~~fseElsPfA~eL~q~L  590 (1010)
T KOG1991|consen  517 ----LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND--DLTNVMEKIVCKFSEELSPFAVELCQNL  590 (1010)
T ss_pred             ----CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence                999999999999999999833     35778888555554444433  4999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC--CCCcc
Q 007146          152 VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI--QPLEC  229 (616)
Q Consensus       152 a~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~--~~~e~  229 (616)
                      |.                         .|+|+.+.+.++++.++++. ++|+||   ++|++|+|.++...|.  .++|+
T Consensus       591 a~-------------------------~F~k~l~~~~~~~~~~ddk~-iaA~Gi---L~Ti~Til~s~e~~p~vl~~le~  641 (1010)
T KOG1991|consen  591 AE-------------------------TFLKVLQTSEDEDESDDDKA-IAASGI---LRTISTILLSLENHPEVLKQLEP  641 (1010)
T ss_pred             HH-------------------------HHHHHHhccCCCCccchHHH-HHHHHH---HHHHHHHHHHHhccHHHHHHHHH
Confidence            99                         66666666666666666666 999999   5999999999999993  99999


Q ss_pred             ccCCCC--cccccHHHHHH---HHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhh-hcccC--c
Q 007146          230 EVSAPP--SCIDDSSMLLR---SIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEI-VNLHS--K  301 (616)
Q Consensus       230 ~~~P~~--~~~~D~s~ll~---~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~-v~~~~--~  301 (616)
                      +++|++  .+.+|.+++|+   +|+.++|++...|++.   ||.+|++++.....|.       +||+.+| +.+||  -
T Consensus       642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~---mW~ll~li~e~~~~~~-------~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI---MWGLLELILEVFQDDG-------IDYFTDMMPALHNYVT  711 (1010)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH---HHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhee
Confidence            999999  99999999999   6677788888888888   9999999999999998       9999999 67777  5


Q ss_pred             ccccchhhccCCCCCCCCCCchhHHhhHHHHHHHHHH--hCchh-hhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHH
Q 007146          302 YELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSA-TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCA  378 (616)
Q Consensus       302 ~g~~~F~~~~~~~~~a~p~~~~s~~~~i~~fvs~ai~--~~p~a-~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~  378 (616)
                      ||+..|..        +|.|.+-+++    +++++++  +--+. +..|||+++.++.+||      |.+|++++.|+++
T Consensus       712 ~g~~~~~s--------~~~y~~il~~----i~~~~l~~e~~~D~d~~~a~kLle~iiL~~k------g~~dq~iplf~~~  773 (1010)
T KOG1991|consen  712 YGTPSLLS--------NPDYLQILLE----IIKKVLTSENGEDSDCESACKLLEVIILNCK------GLLDQYIPLFLEL  773 (1010)
T ss_pred             eCchhhhc--------cchHHHHHHH----HHHHHHcCCCCchHHHHHHHHHHHHHHHHhc------CcHhhHhHHHHHH
Confidence            99998885        6777777776    9999999  34555 8889999999999999      9999999999999


Q ss_pred             HHHhhhhhcCCCCC-chhhHHHHHhhhhccChhhhhhHhhccCCC--chhhhHHHHHhhccCCCCCCcchhhhHHHHHHH
Q 007146          379 AFSRFRAIQSKPSS-LWKPVVLAISSCYLCYPAVVEGILKKDEDG--GFALWGSALAFLCSSSLEPRLSLESEIKLAVLT  455 (616)
Q Consensus       379 A~~rl~~~~s~~~~-l~KpLIlvIs~c~~ynP~lveqvLek~~~~--gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~  455 (616)
                      |.+|+++.  ++++ +.+.+++||+||+||||.+++|+|++.+-+  -|++||+.+.+         +.++|+||+||||
T Consensus       774 a~~~l~~~--~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~---------~~~~HDkKlcvL~  842 (1010)
T KOG1991|consen  774 ALSRLTRE--VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQ---------FKKVHDKKLCVLG  842 (1010)
T ss_pred             HHHHHhcc--ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHH---------HHhhhhHHHHHHH
Confidence            99999863  3444 445599999999999999999999999999  49999999999         7779999999999


Q ss_pred             HHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhcccccCCCCCccccCCccccCCCCCCCCCCCCCcccchhhHHHH
Q 007146          456 LAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFL  535 (616)
Q Consensus       456 L~svi~~Ll~~~~pg~~~ln~~~~slLe~~~~lke~~dededEe~~d~~~~~~~ee~eD~~ddd~~~d~de~ee~e~e~l  535 (616)
                      |+++++.....+.|+. .+++.++.++..+..||+........++++.+++++++++++|+   -.+|+||.++++.+|.
T Consensus       843 l~tli~l~~~~~~~~e-~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e~---~~~d~dD~d~~d~d~~  918 (1010)
T KOG1991|consen  843 LLTLISLGQDPQLPSE-VLGQLGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEED---FIDDEDDIDEDDQDYL  918 (1010)
T ss_pred             HHHHHhccccCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhh---ccCccccccccchhHH
Confidence            9998877322233333 56799999999999999976655554333221122222111111   1223333444555788


Q ss_pred             HHHHHHHhhcccccccCCCCCc---cccccccc-ccccccchhhHHHHhh
Q 007146          536 ERYAKAAVNLENNTLVEEGDVE---DQEHDIEL-GSLDEVDQLKVVASSI  581 (616)
Q Consensus       536 e~~a~~A~~le~~e~~ee~~dd---d~e~dee~-~~ldevd~~~~Vls~~  581 (616)
                      +.+.+.+..-++..+++||.++   ++++|+.+ .+||.||++..+-+.+
T Consensus       919 ~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i  968 (1010)
T KOG1991|consen  919 DEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAI  968 (1010)
T ss_pred             HhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHH
Confidence            8888777765443333333333   34556666 8999999997444333

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein	Back alignment and domain information

>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		616
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3cx5_F		146	Cytochrome B-C1 complex subunit 6; complex III, el	4e-04
2ayu_A		417	Nucleosome assembly protein; histone chaperone; 3.	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 86/674 (12%), Positives = 172/674 (25%), Gaps = 196/674 (29%)

Query: 6   LQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSS 65
           L  F       F    V+     + S            + I+        + +S  +   
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEI--------DHIIMS-----KDAVSGTLR-- 66

Query: 66  LLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL 125
           L   L  L K +             +  +L  +Y   ++      ++  I  E  + S++
Sbjct: 67  LFWTL--LSKQEEM-------VQKFVEEVLRINY---KF------LMSPIKTEQRQPSMM 108

Query: 126 FELLSSVVGAANENVADHIPYIVS--SLVAAISKHMHPSSEPWPQVVERGFA-----ALA 178
             +          +      Y VS       + + +     P   V+  G        +A
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVA 167

Query: 179 LMAQSWENFLREEVELDQSSGK--WES-GQAAIAKAFSALLQQAWLTHIQPLECEVSAPP 235
           L                +   K  W +       +    +LQ+     I P     S   
Sbjct: 168 LDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS--- 217

Query: 236 SCIDDSSMLLRSIILSVSE--RNVIEELKLSELLLVWADLIGDWHAWE------------ 281
               D S  ++  I S+    R +++       LLV  ++    +A              
Sbjct: 218 ----DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKILL 270

Query: 282 ETEDLSVFDCIKEIVNLH----------SKYELKNFIVR------QMPPPPAPPVPPQSI 325
            T    V D +      H          +  E+K+ +++      Q  P       P+  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-R 329

Query: 326 IEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFS---- 381
           +  I   + + +     ATW          +    + +    K +  I  S         
Sbjct: 330 LSIIAESIRDGL-----ATWD---------NWKHVNCD----KLTTIIESSLNVLEPAEY 371

Query: 382 --RFRAIQSKPSSLWKPV-VLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSS 438
              F  +   P S   P  +L++                        +W           
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSL------------------------IWFD------VIK 401

Query: 439 LEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKE-----VQE 493
            +  + +    KL   +L +            +  +   Y  L              V  
Sbjct: 402 SDVMVVVN---KLHKYSLVE------KQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 494 DEENDEGDDEEAEDKEDDN----------EESEDDDEDSEGDECEETEEEFLE-RYAKAA 542
                  D ++      D           +  E  +              FL+ R+ +  
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM------TLFRMVFLDFRFLEQK 506

Query: 543 VNLENNTLVEEGDVEDQEHDIELGSLDEVDQLKVVASSIERYHNVIMQGQTLSSQLISKF 602
           +  ++      G +           L+ + QLK        Y   I        +L++  
Sbjct: 507 IRHDSTAWNASGSI-----------LNTLQQLK-------FYKPYICDNDPKYERLVNAI 548

Query: 603 LKAYPQLTYLLLHS 616
           L   P++   L+ S
Sbjct: 549 LDFLPKIEENLICS 562

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146	Back alignment and structure

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		616
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.92
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.88
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.7
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.52
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.36
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.79
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.68
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.63
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.63
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.39
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.26
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.21
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.61
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.51
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.13
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.12
2x19_B		963	Importin-13; nuclear transport, protein transport;	96.0
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	95.98
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.97
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.85
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.78
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	95.71
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.66
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.61
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.58
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	95.36
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	95.25
3tj1_A		649	RNA polymerase I-specific transcription initiatio	95.16
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	95.07
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	94.73
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	94.16
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	93.71
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	93.03
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	92.75
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.56
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	92.51
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	92.34
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	92.24
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	91.58
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	91.54
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	91.3
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	90.94
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	90.94
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	90.38
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	90.26
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	90.0
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	89.9
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	89.58
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	89.08
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.18
4gmo_A		684	Putative uncharacterized protein; ARM, heat, solen	87.75
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	87.1
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	86.63
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	85.8
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	85.34
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	84.66
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	84.04
2x1g_F		971	Cadmus; transport protein, developmental protein,	83.65
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	83.65
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	81.87
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	81.73
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	80.89

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

Probab=99.92  E-value=1.5e-23  Score=242.74  Aligned_cols=384  Identities=12%  Similarity=0.094  Sum_probs=264.2

Q ss_pred             HHHHHHHhhcccCcccCCc---chhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHH
Q 007146           17 FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG   93 (616)
Q Consensus        17 ~~~~l~~~~V~P~~~~~~~---sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~s   93 (616)
                      .+..++.++|+|.+.  .+   .|+||++|||++|+|+..++++++..++..++++|.|++      +|||+.|+.||..
T Consensus       451 ~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~Al~~  522 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEK  522 (960)
T ss_dssp             CHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHH
Confidence            567778899999887  34   899999999999999998788899999999999999985      9999999999999


Q ss_pred             HHhcCC-------------CCCChhhHHHHHHhhcccc------cchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 007146           94 LLENDY-------------MPPEWYPLLQVIVGRIGYE------DEENSILFELLSSVVGAANENVADHIPYIVSSLVAA  154 (616)
Q Consensus        94 ll~~~~-------------~p~~~~plLq~i~~~i~~e------d~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~  154 (616)
                      |+++..             -.|-+.+||+.+++.+...      ..+...++..|.++++++++++.||++.|++.|...
T Consensus       523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~  602 (960)
T 1wa5_C          523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEI  602 (960)
T ss_dssp             HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHH
T ss_pred             HHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            998532             2346788888777776664      123347999999999999999999999999999987


Q ss_pred             HHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCC
Q 007146          155 ISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP  234 (616)
Q Consensus       155 ~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~  234 (616)
                      +.+....+  .-++.....|+++.++.++   ..++       . .... +-.+...|..+|+.-           .   
T Consensus       603 l~~~~~~~--~~~~~~~~~~e~l~~l~~~---~~~~-------~-~~~~-~~~~~p~~~~iL~~~-----------~---  654 (960)
T 1wa5_C          603 VTIMAKNP--SNPRFTHYTFESIGAILNY---TQRQ-------N-LPLL-VDSMMPTFLTVFSED-----------I---  654 (960)
T ss_dssp             HHHHTTSC--CCHHHHHHHHHHHHHHHHT---SCGG-------G-HHHH-HHHHHHHHHHHHHTT-----------C---
T ss_pred             HHHHHhCC--CCcHHHHHHHHHHHHHHhc---CCcc-------h-HHHH-HHHHHHHHHHHHHhh-----------h---
Confidence            66654322  2355666678888888775   1110       0 1111 112234444444310           0   


Q ss_pred             CcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHH--hhhhhhhhhccchhhHHHHhhhcccCcc---cccchhh
Q 007146          235 PSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI--GDWHAWEETEDLSVFDCIKEIVNLHSKY---ELKNFIV  309 (616)
Q Consensus       235 ~~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~--~~w~~Wee~ed~~~~d~i~e~v~~~~~~---g~~~F~~  309 (616)
                      ..+..++..++..++.....+.++       ||.+|+.++  ..|....         ++..++++..+|   |.++|..
T Consensus       655 ~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~---------~~~~~~~~L~~~~~~~~~~~~~  718 (960)
T 1wa5_C          655 QEFIPYVFQIIAFVVEQSATIPES-------IKPLAQPLLAPNVWELKG---------NIPAVTRLLKSFIKTDSSIFPD  718 (960)
T ss_dssp             TTTHHHHHHHHHHHHHHCSSCCTT-------TGGGHHHHTSGGGGCCTT---------THHHHHHHHHHHHHHHGGGCSC
T ss_pred             HhhHHHHHHHHHHHHHhccCCCHH-------HHHHHHHHcCHHHhcCCC---------CchhHHHHHHHHHHhChHHHHH
Confidence            023334445555555555333332       788888888  7776531         555555444332   3333331


Q ss_pred             ccCCCCCCCCCCchhHHhhHHHHHHHHHH-hCchhhhhhhhHHHHHhhCCCccccchhh-HHhHHHHHHHHHHHhhhhhc
Q 007146          310 RQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSATWRACSCVHTLLHVPKYSFETEGV-KQSLTISFSCAAFSRFRAIQ  387 (616)
Q Consensus       310 ~~~~~~~a~p~~~~s~~~~i~~fvs~ai~-~~p~a~~rAck~~h~vLh~~~~s~~~eg~-~~~~~~~f~~~A~~rl~~~~  387 (616)
                                  .+.++.    .+.+.+. +.+  ...||++...+++.++      +. ...+++.+..+++.|+..  
T Consensus       719 ------------~~~~l~----~~~~~~~~~~~--~~~a~~ll~~i~~~~~------~~~~~~yl~~i~~~l~~~l~~--  772 (960)
T 1wa5_C          719 ------------LVPVLG----IFQRLIASKAY--EVHGFDLLEHIMLLID------MNRLRPYIKQIAVLLLQRLQN--  772 (960)
T ss_dssp             ------------SHHHHH----HHHHHHTCTTT--HHHHHHHHHHHHHHSC------HHHHGGGHHHHHHHHHHGGGS--
T ss_pred             ------------HHHHHH----HHHHHhCCCcc--cchHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHhh--
Confidence                        122333    5666664 333  3779999999999888      66 899999999999999975  


Q ss_pred             CCCCCchhh-HHHHHhhhhccChhhhhhHhhccCCCc-hh----hhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHH
Q 007146          388 SKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDGG-FA----LWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE  461 (616)
Q Consensus       388 s~~~~l~Kp-LIlvIs~c~~ynP~lveqvLek~~~~g-f~----iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~  461 (616)
                      ++..++.|- ++.+...|++|+|+.+.++|++.+.+. +.    .|...+..         +.+.+|||++++||++++.
T Consensus       773 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~---------~~~~~erk~~~~gl~~ll~  843 (960)
T 1wa5_C          773 SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPT---------IGNLLDRKIALIGVLNMVI  843 (960)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGG---------CCSHHHHHHHHHHHHHHHH
T ss_pred             CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhh---------ccCHHHHHHHHHHHHHHHh
Confidence            234446645 677777889999999999999877552 33    78888877         8889999999999999766


Q ss_pred             HHhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 007146          462 RLLGLGNPGSSLLQDCYASLMEAAVQLKEV  491 (616)
Q Consensus       462 ~Ll~~~~pg~~~ln~~~~slLe~~~~lke~  491 (616)
                      .. .. .|  ......+..++..++++.+.
T Consensus       844 ~~-~~-~~--~~~~~~~~~~~~~i~~l~~~  869 (960)
T 1wa5_C          844 NG-QF-FQ--SKYPTLISSTMNSIIETASS  869 (960)
T ss_dssp             SC-HH-HH--HHCGGGHHHHHHHHHHHHHS
T ss_pred             cc-cc-cc--hhHHHHHHHHHHHHHHHHhC
Confidence            52 10 11  12234455555666655443

PyMOL of 1wa5

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		616
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	0.002

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 0.002
 Identities = 58/503 (11%), Positives = 128/503 (25%), Gaps = 57/503 (11%)

Query: 29  LYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 88
           L S ++    L   A   +    + L +    ++   L   LQ      T  Y V   AA
Sbjct: 464 LTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ------TDEYVVYTYAA 517

Query: 89  GAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIV 148
             I  +L           +          E    +++  +L            + +   +
Sbjct: 518 ITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI 577

Query: 149 SSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAI 208
             ++      + P               LA   +      +       +   +ES  A +
Sbjct: 578 FRVLQTSEDSIQPLFPQ----------LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627

Query: 209 AKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLL 268
                  L     + +       S            + + ++  S         L++ LL
Sbjct: 628 NYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLL 687

Query: 269 VWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEG 328
                              +   I  +  L     LK+FI               SI   
Sbjct: 688 -------------APNVWELKGNIPAVTRL-----LKSFIKTD-----------SSIFPD 718

Query: 329 IGAFLS--EAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAI 386
           +   L   + ++   +        +  ++ +   +     +KQ   +       S+    
Sbjct: 719 LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSK---- 774

Query: 387 QSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLE 446
                 + K  V             +   + + +DG F                P +   
Sbjct: 775 --TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL----PTIGNL 828

Query: 447 SEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAE 506
            + K+A++ +  +V       +   +L+     S++E A          +  + D+ E  
Sbjct: 829 LDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEI 888

Query: 507 DKEDDNEESEDDDEDSEGDECEE 529
                +        +   D   E
Sbjct: 889 STFGSHFSKLVSISEKPFDPLPE 911

PyMOL of d1wa5c_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		616
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.74
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.84
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.27
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.05
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.08
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.9
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	95.45
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.28
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	94.58
d1b3ua_		588	Constant regulatory domain of protein phosphatase	93.22
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	92.86
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	92.17
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.12
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	92.03
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	89.62
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	87.48
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	86.05
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	85.86
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	83.91
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	80.4

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.8e-16  Score=170.55  Aligned_cols=363  Identities=13%  Similarity=0.125  Sum_probs=236.2

Q ss_pred             HHHHHHhhcccCccc-CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHh
Q 007146           18 TANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE   96 (616)
Q Consensus        18 ~~~l~~~~V~P~~~~-~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~   96 (616)
                      +..++.++|.|.+.. ..+.+++|++|+|++|+|+...++..+..++..++++|.|++      .+||+.|+.||..++.
T Consensus       452 ~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~V~~~a~~al~~~~~  525 (959)
T d1wa5c_         452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEKILT  525 (959)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHHHH
Confidence            556677888887753 345679999999999999998888899999999999999996      9999999999999987


Q ss_pred             cCC-------------CCCChhhHHHHHHhhccccc------chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHh
Q 007146           97 NDY-------------MPPEWYPLLQVIVGRIGYED------EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISK  157 (616)
Q Consensus        97 ~~~-------------~p~~~~plLq~i~~~i~~ed------~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~  157 (616)
                      ...             .-|-..++++.++..+....      .+...++.+|.++++++++++.||++.+++.|...+.+
T Consensus       526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~  605 (959)
T d1wa5c_         526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTI  605 (959)
T ss_dssp             CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred             hhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432             12356666666666553332      12235899999999999999999999999999987766


Q ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcc
Q 007146          158 HMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSC  237 (616)
Q Consensus       158 ~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~  237 (616)
                      ....+.+  +..+...|+++..+.++-.   +        . ..    ..+...+-.++..++.....          ..
T Consensus       606 ~~~~~~~--~~~~~~~~e~l~~l~~~~~---~--------~-~~----~~l~~~l~p~i~~~~~~~~~----------~~  657 (959)
T d1wa5c_         606 MAKNPSN--PRFTHYTFESIGAILNYTQ---R--------Q-NL----PLLVDSMMPTFLTVFSEDIQ----------EF  657 (959)
T ss_dssp             HTTSCCC--HHHHHHHHHHHHHHHHTSC---G--------G-GH----HHHHHHHHHHHHHHHHTTCT----------TT
T ss_pred             HhcCccc--hHHHHHHHHHHHHHHHhcC---c--------h-hH----HHHHHHHHHHHHHHHhccch----------hH
Confidence            6643333  5666677777777766311   1        0 01    11123333333333331111          23


Q ss_pred             cccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhcccCc---ccccchhhccCCC
Q 007146          238 IDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSK---YELKNFIVRQMPP  314 (616)
Q Consensus       238 ~~D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~~---~g~~~F~~~~~~~  314 (616)
                      ..++..++..++++....++.       +|.++..++.. ..|.      ..+++..++.+.++   +|...|..     
T Consensus       658 ~~~~~~l~~~~~~~~~~~~~~-------~~~l~~~l~~~-~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~-----  718 (959)
T d1wa5c_         658 IPYVFQIIAFVVEQSATIPES-------IKPLAQPLLAP-NVWE------LKGNIPAVTRLLKSFIKTDSSIFPD-----  718 (959)
T ss_dssp             HHHHHHHHHHHHHHCSSCCTT-------TGGGHHHHTSG-GGGC------CTTTHHHHHHHHHHHHHHHGGGCSC-----
T ss_pred             HHHHHHHHHHHHHhCCCccHH-------HHHHHHHHhhH-HHHH------HhhhHHHHHHHHHHHHHhCHHhhcc-----
Confidence            456777777777777655443       33334444322 1122      12334444333332   33332321     


Q ss_pred             CCCCCCCchhHHhhHHHHHHHHHHhCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCch
Q 007146          315 PPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLW  394 (616)
Q Consensus       315 ~~a~p~~~~s~~~~i~~fvs~ai~~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~  394 (616)
                             -..++.    .+.+.+ ..+.....|.+++..+++.+.     ....+.+.+.+.++.+.|+..  .....+.
T Consensus       719 -------~~~~l~----~~~~~l-~~~~~~~~~~~ll~~ii~~~~-----~~~~~~~l~~i~~~~~~~l~~--~~~~~~~  779 (959)
T d1wa5c_         719 -------LVPVLG----IFQRLI-ASKAYEVHGFDLLEHIMLLID-----MNRLRPYIKQIAVLLLQRLQN--SKTERYV  779 (959)
T ss_dssp             -------SHHHHH----HHHHHH-TCTTTHHHHHHHHHHHHHHSC-----HHHHGGGHHHHHHHHHHGGGS--SCCHHHH
T ss_pred             -------hHHHHH----HHHHHH-CCCcchHHHHHHHHHHHHHCc-----hhhhHhHHHHHHHHHHHHHHh--cccHHHH
Confidence                   122333    444444 333334457888998888876     135688999999999999975  1222344


Q ss_pred             hh-HHHHHhhhhccChhhhhhHhhccCCCc-----hhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHH
Q 007146          395 KP-VVLAISSCYLCYPAVVEGILKKDEDGG-----FALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE  461 (616)
Q Consensus       395 Kp-LIlvIs~c~~ynP~lveqvLek~~~~g-----f~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~  461 (616)
                      +- ++...-.|++|+|+.+.++|+..-.+.     ...|......         +.+.+++|+++||+++++.
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~~l~l~~ll~  843 (959)
T d1wa5c_         780 KKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPT---------IGNLLDRKIALIGVLNMVI  843 (959)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGG---------CCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcccc---------cCCHHHHHHHHHHHHHHhc
Confidence            44 444444567899999999999765553     3346555555         8889999999999999764

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure