Citrus Sinensis ID: 007158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSERTYE
cccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEEccccEEEEEEcHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHccccccccccccccc
ccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHEcccHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEcccccEEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHcccccccEEcccccc
MSNQKKRNFQIEAFKhrvvvdpkyAEKTWKILEHAIHEIynhnasglsfEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMdrtyipsthktpvhelglnlwrdnIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMdlgpsvyqedfekpFLEVSAEFYKVEsqkfieccdcgEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIanhmprlvhmdNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETgkqlvtdperlkdPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFinlnprspefiSLFVDDKLrkglkgvseEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLlsgktvsddAERSLIVKLKtecgyqftsklegmftdmktsqdTMHEFYashpelgdsrTLVVQVLTtgswptqpsvtcnlpAEMSALCEKFRSYYLgthtgrrlswqtnmgsadikatfgkgqkhelNVSTYQMCVLMLFNNAdrlsyqgnragnrdscfrlekvpaisglcegeecssertye
msnqkkrnfqieafkhrvvvdpKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTllelvhrertgevinrglMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVthyldakseakiTNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRetgkqlvtdperlkdpVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKglkgvseedveTILDKVMMLFRYLQEKDVFEKYYKQHLAKrllsgktvsddAERSLIVKlktecgyqftSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGswptqpsvtCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVpaisglcegeecssertye
MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAIsglcegeecsseRTYE
********FQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVT****LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDM******MHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLC************
***********************YAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKG*******DVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGL*************
MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLC************
******RNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSE**Y*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYxxxxxxxxxxxxxxxxxxxxxKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSERTYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query615 2.2.26 [Sep-21-2011]
Q9ZVH4 732 Cullin-3A OS=Arabidopsis yes no 0.943 0.792 0.85 0.0
Q9C9L0 732 Cullin-3B OS=Arabidopsis no no 0.943 0.792 0.855 0.0
Q54NZ5 769 Cullin-3 OS=Dictyostelium yes no 0.917 0.733 0.554 0.0
Q13618 768 Cullin-3 OS=Homo sapiens yes no 0.936 0.75 0.517 1e-174
B5DF89 768 Cullin-3 OS=Rattus norveg yes no 0.936 0.75 0.515 1e-174
Q9JLV5 768 Cullin-3 OS=Mus musculus yes no 0.936 0.75 0.513 1e-173
Q6DE95 768 Cullin-3-A OS=Xenopus lae N/A no 0.938 0.751 0.511 1e-172
Q6GPF3 768 Cullin-3-B OS=Xenopus lae N/A no 0.938 0.751 0.509 1e-172
A4IHP4 768 Cullin-3 OS=Xenopus tropi yes no 0.938 0.751 0.509 1e-172
Q17391 777 Cullin-3 OS=Caenorhabditi yes no 0.908 0.719 0.422 1e-128
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function desciption
 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/580 (85%), Positives = 539/580 (92%)

Query: 1   MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
           MSNQKKRNFQIEAFKHRVVVDPKYA+KTW+ILE AIH+IYN +ASGLSFEELYRNAYNMV
Sbjct: 1   MSNQKKRNFQIEAFKHRVVVDPKYADKTWQILERAIHQIYNQDASGLSFEELYRNAYNMV 60

Query: 61  LHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYM 120
           LHKFGEKLY+G ++TMT HLKE SK IEAAQGGSFLEELN+KWN+HNKAL+MIRDILMYM
Sbjct: 61  LHKFGEKLYTGFIATMTSHLKEKSKLIEAAQGGSFLEELNKKWNEHNKALEMIRDILMYM 120

Query: 121 DRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNI 180
           DRTYI ST KT VH +GLNLWRDN+V   KI TRLLNTLL+LV +ER GEVI+RGLMRN+
Sbjct: 121 DRTYIESTKKTHVHPMGLNLWRDNVVHFTKIHTRLLNTLLDLVQKERIGEVIDRGLMRNV 180

Query: 181 IKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVT 240
           IKM MDLG SVYQEDFEKPFL+ S+EFYKVESQ+FIE CDCG+YLKK+E+RL EE+ERV 
Sbjct: 181 IKMFMDLGESVYQEDFEKPFLDASSEFYKVESQEFIESCDCGDYLKKSEKRLTEEIERVA 240

Query: 241 HYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSG 300
           HYLDAKSE KIT+VVEKEMIANHM RLVHM+NSGLVNMLL+DKYEDLGRMYNLFRRV +G
Sbjct: 241 HYLDAKSEEKITSVVEKEMIANHMQRLVHMENSGLVNMLLNDKYEDLGRMYNLFRRVTNG 300

Query: 301 LLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNA 360
           L+T+R+VMTSHLRE GKQLVTDPE+ KDPVEFVQRLLDE+DKYD II++AF NDKTFQNA
Sbjct: 301 LVTVRDVMTSHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDKIINTAFGNDKTFQNA 360

Query: 361 LNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFE 420
           LNSSFEYFINLN RSPEFISLFVDDKLRKGLKG+++ DVE ILDKVMMLFRYLQEKDVFE
Sbjct: 361 LNSSFEYFINLNARSPEFISLFVDDKLRKGLKGITDVDVEVILDKVMMLFRYLQEKDVFE 420

Query: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYA 480
           KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTS+DTM  FY 
Sbjct: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSEDTMRGFYG 480

Query: 481 SHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTN 540
           SHPEL +  TL+VQVLTTGSWPTQP+V CNLPAE+S LCEKFRSYYLGTHTGRRLSWQTN
Sbjct: 481 SHPELSEGPTLIVQVLTTGSWPTQPAVPCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQTN 540

Query: 541 MGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 580
           MG+ADIKA FGKGQKHELNVST+QMCVLMLFNN+DRLSY+
Sbjct: 541 MGTADIKAIFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3B.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2 Back     alignment and function description
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2 Back     alignment and function description
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1 Back     alignment and function description
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
224111260 733 predicted protein [Populus trichocarpa] 0.943 0.791 0.932 0.0
224099735 732 predicted protein [Populus trichocarpa] 0.943 0.792 0.925 0.0
356526914 732 PREDICTED: cullin-3A-like [Glycine max] 0.943 0.792 0.877 0.0
356567521 732 PREDICTED: cullin-3A-like [Glycine max] 0.943 0.792 0.874 0.0
225425720 733 PREDICTED: cullin-3A [Vitis vinifera] 0.943 0.791 0.901 0.0
225452781 733 PREDICTED: cullin-3B [Vitis vinifera] gi 0.943 0.791 0.881 0.0
357516169 731 Cullin 3-like protein [Medicago truncatu 0.941 0.792 0.863 0.0
449459468 733 PREDICTED: cullin-3A-like [Cucumis sativ 0.943 0.791 0.860 0.0
297845492 732 ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis l 0.943 0.792 0.851 0.0
15223361 732 cullin 3 [Arabidopsis thaliana] gi|75315 0.943 0.792 0.85 0.0
>gi|224111260|ref|XP_002315795.1| predicted protein [Populus trichocarpa] gi|222864835|gb|EEF01966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/581 (93%), Positives = 565/581 (97%), Gaps = 1/581 (0%)

Query: 1   MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
           MSNQKKRNFQIEAFKHRVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
Sbjct: 1   MSNQKKRNFQIEAFKHRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60

Query: 61  LHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYM 120
           LHKFGEKLY+GLV+TMT HL+EISKS+EAAQG SFLEELNRKWNDHNKALQMIRDILMYM
Sbjct: 61  LHKFGEKLYNGLVATMTSHLREISKSVEAAQGDSFLEELNRKWNDHNKALQMIRDILMYM 120

Query: 121 DRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNI 180
           DRTYIPSTHKTPVHELGLNLWRDNI+ S+KIQTRL NTLLELVHRERTGEVI+RGLMRNI
Sbjct: 121 DRTYIPSTHKTPVHELGLNLWRDNIIHSSKIQTRLQNTLLELVHRERTGEVIDRGLMRNI 180

Query: 181 IKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVT 240
           +KMLMDLG SVYQEDFEKPFLEVSAEFY+ ESQKFIECCDCG+YLKKAE+RLNEE+ERVT
Sbjct: 181 VKMLMDLGSSVYQEDFEKPFLEVSAEFYRGESQKFIECCDCGDYLKKAEKRLNEEIERVT 240

Query: 241 HYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSG 300
           HYLD+KSE KITNVVEKEMIANHM RLVHM+NSGLVNMLLDDKYEDLGRMYNLFRRVP+G
Sbjct: 241 HYLDSKSEVKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYEDLGRMYNLFRRVPNG 300

Query: 301 LLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNA 360
           L TIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYD+IIS+AFNNDKTFQNA
Sbjct: 301 LSTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDSIISNAFNNDKTFQNA 360

Query: 361 LNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFE 420
           LNSSFEYFINLN RSPEFISLFVDDKLRKGLKGVSEEDVE ILDKVMMLFRYLQEKDVFE
Sbjct: 361 LNSSFEYFINLNARSPEFISLFVDDKLRKGLKGVSEEDVEIILDKVMMLFRYLQEKDVFE 420

Query: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYA 480
           KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTM  FYA
Sbjct: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYA 480

Query: 481 SHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTN 540
           SH ELGD+RTLVVQVLTTGSWPTQP VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTN
Sbjct: 481 SHLELGDARTLVVQVLTTGSWPTQPGVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTN 540

Query: 541 MGSADIKATFGK-GQKHELNVSTYQMCVLMLFNNADRLSYQ 580
           MG+AD+KATFGK GQKHELNVSTYQMCVLMLFNNA+RLSY+
Sbjct: 541 MGTADVKATFGKGGQKHELNVSTYQMCVLMLFNNAERLSYK 581

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099735|ref|XP_002311598.1| predicted protein [Populus trichocarpa] gi|222851418|gb|EEE88965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526914|ref|XP_003532060.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|356567521|ref|XP_003551967.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|225425720|ref|XP_002275251.1| PREDICTED: cullin-3A [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452781|ref|XP_002283300.1| PREDICTED: cullin-3B [Vitis vinifera] gi|147833364|emb|CAN72935.1| hypothetical protein VITISV_020617 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357516169|ref|XP_003628373.1| Cullin 3-like protein [Medicago truncatula] gi|355522395|gb|AET02849.1| Cullin 3-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449459468|ref|XP_004147468.1| PREDICTED: cullin-3A-like [Cucumis sativus] gi|449509229|ref|XP_004163530.1| PREDICTED: cullin-3A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297845492|ref|XP_002890627.1| ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis lyrata subsp. lyrata] gi|297336469|gb|EFH66886.1| ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223361|ref|NP_174005.1| cullin 3 [Arabidopsis thaliana] gi|75315944|sp|Q9ZVH4.1|CUL3A_ARATH RecName: Full=Cullin-3A; Short=AtCUL3a gi|9295728|gb|AAF87034.1|AC006535_12 T24P13.25 [Arabidopsis thaliana] gi|4262186|gb|AAD14503.1| Highly similar to cullin 3 [Arabidopsis thaliana] gi|34364502|emb|CAC87120.1| cullin 3a [Arabidopsis thaliana] gi|332192626|gb|AEE30747.1| cullin 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
TAIR|locus:2205020 732 CUL3B "AT1G69670" [Arabidopsis 0.943 0.792 0.855 6.4e-273
TAIR|locus:2200670 732 CUL3 "AT1G26830" [Arabidopsis 0.943 0.792 0.85 2.8e-272
DICTYBASE|DDB_G0284903 769 culC "cullin C" [Dictyostelium 0.917 0.733 0.554 4.4e-171
UNIPROTKB|Q13618 768 CUL3 "Cullin-3" [Homo sapiens 0.897 0.718 0.532 1.2e-160
UNIPROTKB|E1BIN5 768 CUL3 "Uncharacterized protein" 0.897 0.718 0.530 3.3e-160
RGD|1308190 768 Cul3 "cullin 3" [Rattus norveg 0.897 0.718 0.530 3.3e-160
ZFIN|ZDB-GENE-081007-1 766 cul3b "cullin 3b" [Danio rerio 0.886 0.711 0.533 8.6e-160
MGI|MGI:1347360 768 Cul3 "cullin 3" [Mus musculus 0.897 0.718 0.529 1.1e-159
UNIPROTKB|F1PU58 750 CUL3 "Uncharacterized protein" 0.878 0.72 0.537 1.8e-159
UNIPROTKB|E1BYQ3 746 CUL3 "Uncharacterized protein" 0.878 0.723 0.537 2.3e-159
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2624 (928.8 bits), Expect = 6.4e-273, P = 6.4e-273
 Identities = 496/580 (85%), Positives = 542/580 (93%)

Query:     1 MSNQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
             MSNQKKRNFQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
Sbjct:     1 MSNQKKRNFQIEAFKQRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60

Query:    61 LHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYM 120
             LHK+G+KLY+GLV+TMT HLKEI KSIE AQGG+FLE LNRKWNDHNKALQMIRDILMYM
Sbjct:    61 LHKYGDKLYTGLVTTMTFHLKEICKSIEEAQGGAFLELLNRKWNDHNKALQMIRDILMYM 120

Query:   121 DRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNI 180
             DRTY+ +T KT VHELGL+LWRDN+V S+KIQTRLLNTLL+LVH+ERTGEVI+R LMRN+
Sbjct:   121 DRTYVSTTKKTHVHELGLHLWRDNVVYSSKIQTRLLNTLLDLVHKERTGEVIDRVLMRNV 180

Query:   181 IKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVT 240
             IKM MDLG SVYQ+DFEKPFLE SAEFYKVES +FIE CDCGEYLKKAE+ L EE+ERV 
Sbjct:   181 IKMFMDLGESVYQDDFEKPFLEASAEFYKVESMEFIESCDCGEYLKKAEKPLVEEVERVV 240

Query:   241 HYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSG 300
             +YLDAKSEAKIT+VVE+EMIANH+ RLVHM+NSGLVNMLL+DKYED+GRMY+LFRRV +G
Sbjct:   241 NYLDAKSEAKITSVVEREMIANHVQRLVHMENSGLVNMLLNDKYEDMGRMYSLFRRVANG 300

Query:   301 LLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNA 360
             L+T+R+VMT HLRE GKQLVTDPE+ KDPVEFVQRLLDE+DKYD II+ AFNNDKTFQNA
Sbjct:   301 LVTVRDVMTLHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDRIINMAFNNDKTFQNA 360

Query:   361 LNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFE 420
             LNSSFEYF+NLN RSPEFISLFVDDKLRKGLKGV EEDV+ ILDKVMMLFRYLQEKDVFE
Sbjct:   361 LNSSFEYFVNLNTRSPEFISLFVDDKLRKGLKGVGEEDVDLILDKVMMLFRYLQEKDVFE 420

Query:   421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYA 480
             KYYKQHLAKRLLSGKTVSDDAER+LIVKLKTECGYQFTSKLEGMFTDMKTS DT+  FY 
Sbjct:   421 KYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGYQFTSKLEGMFTDMKTSHDTLLGFYN 480

Query:   481 SHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTN 540
             SHPEL +  TLVVQVLTTGSWPTQP++ CNLPAE+S LCEKFRSYYLGTHTGRRLSWQTN
Sbjct:   481 SHPELSEGPTLVVQVLTTGSWPTQPTIQCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQTN 540

Query:   541 MGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 580
             MG+ADIKA FGKGQKHELNVST+QMCVLMLFNN+DRLSY+
Sbjct:   541 MGTADIKAVFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;RCA
GO:0009960 "endosperm development" evidence=IGI
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2200670 CUL3 "AT1G26830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q13618 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIN5 CUL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308190 Cul3 "cullin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1347360 Cul3 "cullin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU58 CUL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYQ3 CUL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5DF89CUL3_RATNo assigned EC number0.51550.93650.75yesno
Q9ZVH4CUL3A_ARATHNo assigned EC number0.850.94300.7923yesno
A4IHP4CUL3_XENTRNo assigned EC number0.50980.93820.7513yesno
Q13618CUL3_HUMANNo assigned EC number0.51720.93650.75yesno
Q9JLV5CUL3_MOUSENo assigned EC number0.51390.93650.75yesno
Q54NZ5CUL3_DICDINo assigned EC number0.55430.91700.7334yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647 773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-112
smart00182143 smart00182, CULLIN, Cullin 4e-52
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  569 bits (1467), Expect = 0.0
 Identities = 238/560 (42%), Positives = 359/560 (64%), Gaps = 15/560 (2%)

Query: 29  WKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIE 88
           W+ L  AI +I   + S L + ELY   YN V HK GEKLY+ L   +  ++  + KSI 
Sbjct: 1   WEKLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVAALLKSIL 60

Query: 89  AAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRS 148
                  L+   ++WN  + +++++ +I MY++R Y+   +   V+ELGL++WR+++   
Sbjct: 61  ENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIWRESLF-- 118

Query: 149 NKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGP---SVYQEDFEKPFLEVSA 205
           + I+ +L++ LL L+ +ER GE+I+R L++N++ M ++LG     VY+EDFEKPFLE ++
Sbjct: 119 DPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPFLEATS 178

Query: 206 EFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMP 265
           EFYK ES KF++     EY+KK E RL EE ERV  YL + +E K+  V EK +I  H+ 
Sbjct: 179 EFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLIEKHLE 238

Query: 266 RLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPER 325
            L    +S    +L ++K EDL RMY L  RVP+GL  +R+    H+++ G   V+D   
Sbjct: 239 FL----HSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAVSDLAV 294

Query: 326 LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNP-RSPEFISLFVD 384
             DP ++VQ LL+  DKYD++++ AFNND  F NAL+ +FE FIN N  +S E ++ + D
Sbjct: 295 ETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINSNSSKSAELLAKYCD 354

Query: 385 DKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERS 444
             L+K LKG++EE++E  LDK+++LF+Y+++KDVFEK+Y++ LAKRLL+G + SDDAE+ 
Sbjct: 355 SLLKKSLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKK 414

Query: 445 LIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASH----PELGDSRTLVVQVLTTGS 500
           +I KLK ECGYQFTSKLE MF D+  S++  + F          L +   L V VL+TG 
Sbjct: 415 MIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGF 474

Query: 501 WPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNV 560
           WPT P+   +LP E+    EKF  +Y   H+GR+L+W  ++G  ++KA F     +EL V
Sbjct: 475 WPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDK-TYELTV 533

Query: 561 STYQMCVLMLFNNADRLSYQ 580
           STYQM VL+LFN+ + L+ +
Sbjct: 534 STYQMAVLLLFNDQEELTVE 553

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2166 725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647 773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284 728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2167 661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2285 777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165 765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.65
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 95.04
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information 
Probab=100.00  E-value=2.6e-90  Score=780.64  Aligned_cols=547  Identities=41%  Similarity=0.735  Sum_probs=506.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 007158           29 WKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNK  108 (615)
Q Consensus        29 W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~i~~~l~~~~~~~~L~~~~~~W~~y~~  108 (615)
                      |+.|++||+.|+.+..++.+||++|+.||++|.+++|++||+.+++.+.+++.++.+++.+..++++|..|...|.+|+.
T Consensus         1 W~~l~~~i~~i~~~~~~~~~~~~lY~~vy~l~~~~~~~~LY~~l~~~i~~~~~~~~~~l~~~~~~~~l~~~~~~w~~~~~   80 (588)
T PF00888_consen    1 WEILEEAIDQIFKKSISKLSYMELYTCVYNLCDNKYGEQLYDKLKEFISEYLKNIIESLLSSSDEDLLEEYVQEWEKYKK   80 (588)
T ss_dssp             HHHHHHHHHHHHTT-GCCSHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence            99999999999987778899999999999999999999999999999999999999998777788999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccCCCCCccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhC
Q 007158          109 ALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG  188 (615)
Q Consensus       109 ~~~~l~~vf~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I~~~R~g~~i~~~~lk~ii~~l~~lg  188 (615)
                      ++.+|+++|+||||+|+.++           +|++.|+.  ++.++++++++++|.++|.|+.++...++++++++.++|
T Consensus        81 ~~~~i~~if~yLdr~yv~~~-----------~f~~~v~~--~~~~~i~~~ll~~I~~~R~g~~~~~~~l~~~~~~~~~l~  147 (588)
T PF00888_consen   81 AIKYISDIFSYLDRNYVKRN-----------LFREQVFK--PLKDKIINALLNLIKNEREGEKIDRSLLKNVIEMFVELG  147 (588)
T ss_dssp             HHHHHHHHTHHHHHTSTTTT-----------HHHHHTTT--SHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHhhhhhh-----------hHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccc
Confidence            99999999999999999886           99999999  799999999999999999999999999999999999997


Q ss_pred             -cccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhhhHHH
Q 007158          189 -PSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRL  267 (615)
Q Consensus       189 -~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~i  267 (615)
                       ..+|.+.||++|++.|.+||+.++   +++.++.+|+++|+.++.+|.+|+..|++++|.+++.+++.++||.+|.+.|
T Consensus       148 ~~~~y~~~fe~~~l~~t~~yY~~~~---i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~ki~~~l~~~LI~~~~~~l  224 (588)
T PF00888_consen  148 SLEVYEEEFEKPFLEETKEYYKSES---IQENSVSEYLKKVENRLKEEEERVQKYLHPSTKEKIIKTLEEVLISDHLDEL  224 (588)
T ss_dssp             HTHHHHHHTHHHHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHHHHCS-GGGHHHHHHHHHHHHTGGGHHHH
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Confidence             678999999999999999999999   6778999999999999999999999999999999999999999999999999


Q ss_pred             HhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhcCcccCCCcHHHHHHHHHHHHHHHHHH
Q 007158          268 VHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNII  347 (615)
Q Consensus       268 l~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i~~ll~l~~~~~~l~  347 (615)
                          .+|+..|+++++.++|+++|+|+++++++++.+++.|++||.+.|.++++.......+.++|+.++++|+++..++
T Consensus       225 ----~~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i~~ll~l~~~~~~l~  300 (588)
T PF00888_consen  225 ----SSGFRDLLEEDDKEDLKRLYRLFSRVPNGLESLRDAFKEYIKKEGQNIIDSFEKSSDPKEFIEDLLELYDKYEKLI  300 (588)
T ss_dssp             ----HTCHHHHHHTT-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhhHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Confidence                5799999999999999999999999999999999999999999999999876544567899999999999999999


Q ss_pred             HhhcCCCHHhHHHHHHHHHHhhccC-CCcHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 007158          348 SSAFNNDKTFQNALNSSFEYFINLN-PRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQH  426 (615)
Q Consensus       348 ~~~F~~~~~f~~~i~~af~~~ln~~-~~~~e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~  426 (615)
                      .++|++++.|.+++++||+.++|.. .+++++||+|||.+++++.++.+++++++.++.++.+|+|+++||+|+.+|+++
T Consensus       301 ~~~F~~~~~f~~~l~~af~~~~n~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~~~i~~l~~~l~~Kd~F~~~Y~~~  380 (588)
T PF00888_consen  301 QECFDNDSEFKKALDEAFEEFLNKNNNKIPELLAKYCDSLLRKSNKKLSEEEIEQKLDDIVKLFSYLSDKDVFEKYYKKL  380 (588)
T ss_dssp             HHTTTT-HHHHHHHHHHHHHHHHCSTSHHHHHHHHHHHHHHBSSCCCS-HCCHHHHHHHHHHHHTTSSTHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHhHHHHHHcCCcchHHHHHHHhhHhhhhcccccchHHHHHHhhhhEEEeeecchhHHHHHHHHHH
Confidence            9999999999999999999999987 899999999999999999877888899999999999999999999999999999


Q ss_pred             HHhHhcCCCCCChHHHHHHHHHHHHhccchhhHhHHHhhhhHHhhHHHHHHHhhhcCCCCC----CccEEEEEeccCCCC
Q 007158          427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGD----SRTLVVQVLTTGSWP  502 (615)
Q Consensus       427 L~~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~----~~~~~~~vls~~~WP  502 (615)
                      ||+|||.+++.+.+.|..++++|+.+||.+++++|++|++|+..|+++++.|++....++.    +++|+|.||++++||
T Consensus       381 L~~RLl~~~~~~~~~E~~~i~~Lk~~~g~~~~~kl~~M~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~~vls~~~Wp  460 (588)
T PF00888_consen  381 LAKRLLSNKSFSEDAEKSMIEKLKKECGSSYTSKLEVMLKDIKNSKELNEEFKQKQSQNNIQLIPPFDFNVKVLSKGYWP  460 (588)
T ss_dssp             HHHHHHTT-BS-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-SS--CCEEEEEEEETTTS-
T ss_pred             HHHHHhcccccccHHHHHHHHHHhcccCchhHHHHHHHHHHHhhcHHHHHHHHHHhhhccccccCCCceEEEEecCCCCC
Confidence            9999999999999999999999999999999999999999999999999999987654332    789999999999999


Q ss_pred             CCCCCC-CCCcHhHHHHHHHHHHHHhcCCCCcceeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCccHHH
Q 007158          503 TQPSVT-CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQG  581 (615)
Q Consensus       503 ~~~~~~-~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~g~~~~l~vs~~Qa~iLl~Fn~~~~~t~~e  581 (615)
                      ..+..+ +.+|++|+.+++.|++||+.+|+||+|+|.|++|+|+|++++++ ++++++||++||+||++||+++++|+++
T Consensus       461 ~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~-~~~~l~~s~~q~~iLl~Fn~~~~~t~~e  539 (588)
T PF00888_consen  461 KYPSENNIKLPPELQQALDSFEKFYKEKHKGRKLTWLPSLSSVEIEFNFNN-GKYELTVSTLQAAILLLFNDNDSLTVEE  539 (588)
T ss_dssp             S-S-SS-----HHHHHHHHHHHHHHHTTSTTEEEEEEGGGEEEEEEEESSS-SEEEEEEEHHHHHHHHGGGSSSEEEHHH
T ss_pred             CCCCCccccCCHHHHHHHHHHHHHHHhcCCCcEEEEecccCcEEEEEEecC-CceeEEeeHHHHHHHHHHccCCCccHHH
Confidence            887655 99999999999999999999999999999999999999999998 8899999999999999999999999999


Q ss_pred             HHHhcCCChhhhhhh
Q 007158          582 NRAGNRDSCFRLEKV  596 (615)
Q Consensus       582 i~~~t~~~~~~l~~~  596 (615)
                      |++.||++++.+..+
T Consensus       540 i~~~~~~~~~~l~~~  554 (588)
T PF00888_consen  540 ISEKTGISEEELKRA  554 (588)
T ss_dssp             HHHHC---HHHHHHH
T ss_pred             HHHHHCcCHHHHHHH
Confidence            999999999988754

Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
2hye_C 759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-112
4a0k_A 742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-112
4a0l_E 726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-108
4a0c_C 741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-108
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-104
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-104
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-90
1u6g_A 776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 3e-82
1ldj_A 760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 3e-82
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 6e-47
1ldk_B 366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 5e-40
3rtr_A 368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 2e-37
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 2e-37
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 3e-37
3dpl_C 382 Structural Insights Into Nedd8 Activation Of Cullin 8e-19
3dqv_C 382 Structural Insights Into Nedd8 Activation Of Cullin 2e-17
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 2e-14
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 339/576 (58%), Gaps = 15/576 (2%)
Query: 11  IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
           I+ F+ R  +   Y + TW+ L  A+  + +  +   + EELY+   N+  HK    LY 
Sbjct: 45  IKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYK 104
Query: 71  GLVSTMTLHLKE--ISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPST 128
            L      H++   +    ++     FL+++N  W DH + + MIR I +++DRTY+   
Sbjct: 105 QLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN 164
Query: 129 HKTP-VHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDL 187
              P + ++GL L+R +I+    +Q++ ++ +L L+ RER+GE ++R L+R+++ ML DL
Sbjct: 165 STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL 224
Query: 188 GPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKS 247
              VY++ FE  FLE +   Y  E Q+ ++  +  EYL    +RL EE +RV  YLD  +
Sbjct: 225 --QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 282
Query: 248 EAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREV 307
           +  +   VEK+++  H+  ++     GL ++L +++  DL +MY LF RV  G   + + 
Sbjct: 283 QKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 339
Query: 308 MTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEY 367
            + +++  G  +V +PE+ KD    VQ LLD KDK D++I   F  ++ F N +  SFE 
Sbjct: 340 WSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFET 396
Query: 368 FINLNPRSP-EFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQH 426
           FIN  P  P E I+  VD KLR G K  ++E++E  LDK+M+LFR++  KDVFE +YK+ 
Sbjct: 397 FINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKD 456
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELG 486
           LAKRLL GK+ S DAE+S++ KLK ECG  FTSKLEGMF DM+ S+D M  F        
Sbjct: 457 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS 516
Query: 487 DSRT--LVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSA 544
           DS    L V +LT G WPT   +  +L  EM  L E F+++YLG H+GR+L WQT +G A
Sbjct: 517 DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 576
Query: 545 DIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 580
            +KA F +G+K E  VS +Q  VL++FN  D  S++
Sbjct: 577 VLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFE 611
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-177
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-119
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-110
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 2e-99
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 5e-94
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 5e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  559 bits (1442), Expect = 0.0
 Identities = 220/583 (37%), Positives = 338/583 (57%), Gaps = 15/583 (2%)

Query: 4   QKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHK 63
              +   I+ F+ R  +   Y + TW+ L  A+  + +  +   + EELY+   N+  HK
Sbjct: 38  GGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHK 97

Query: 64  FGEKLYSGLVSTMTLHLKEISKSI--EAAQGGSFLEELNRKWNDHNKALQMIRDILMYMD 121
               LY  L      H++        ++     FL+++N  W DH + + MIR I +++D
Sbjct: 98  VSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLD 157

Query: 122 RTYIPSTHKTP-VHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNI 180
           RTY+      P + ++GL L+R +I+    +Q++ ++ +L L+ RER+GE ++R L+R++
Sbjct: 158 RTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSL 217

Query: 181 IKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVT 240
           + ML DL   VY++ FE  FLE +   Y  E Q+ ++  +  EYL    +RL EE +RV 
Sbjct: 218 LGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVI 275

Query: 241 HYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSG 300
            YLD  ++  +   VEK+++  H+  ++     GL ++L +++  DL +MY LF RV  G
Sbjct: 276 TYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGG 332

Query: 301 LLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNA 360
              + +  + +++  G  +V +PE+ KD    VQ LLD KDK D++I   F  ++ F N 
Sbjct: 333 QQALLQHWSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNL 389

Query: 361 LNSSFEYFINLNP-RSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVF 419
           +  SFE FIN  P +  E I+  VD KLR G K  ++E++E  LDK+M+LFR++  KDVF
Sbjct: 390 MKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVF 449

Query: 420 EKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFY 479
           E +YK+ LAKRLL GK+ S DAE+S++ KLK ECG  FTSKLEGMF DM+ S+D M  F 
Sbjct: 450 EAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFK 509

Query: 480 ASHPELGDSRT--LVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSW 537
                  DS    L V +LT G WPT   +  +L  EM  L E F+++YLG H+GR+L W
Sbjct: 510 QHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQW 569

Query: 538 QTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 580
           QT +G A +KA F +G K E  VS +Q  VL++FN  D  S++
Sbjct: 570 QTTLGHAVLKAEFKEG-KKEFQVSLFQTLVLLMFNEGDGFSFE 611
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
Probab=100.00  E-value=1.8e-108  Score=940.82  Aligned_cols=583  Identities=37%  Similarity=0.662  Sum_probs=553.3

Q ss_pred             ccCccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 007158            5 KKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEIS   84 (615)
Q Consensus         5 ~~~~~~i~~~~~~~~~~~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~i~   84 (615)
                      ++|+++||||++++.+|+++|++.|+.|++||+.|+.+++.+.+|+++|+.||++|++++|++||+++++.+.+|+..++
T Consensus        39 ~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~  118 (759)
T 2hye_C           39 GSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQI  118 (759)
T ss_dssp             --CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999987888899999999999999999999888999999999999999999999999999999999999988


Q ss_pred             HHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CccHhHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 007158           85 KSIEA--AQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHELGLNLWRDNIVRSNKIQTRLLNTLLE  161 (615)
Q Consensus        85 ~~l~~--~~~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~  161 (615)
                      +++..  ..++.+|+.|..+|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+..+.+.+++++++++
T Consensus       119 ~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~  198 (759)
T 2hye_C          119 LPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILL  198 (759)
T ss_dssp             HHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Confidence            88754  2335899999999999999999999999999999999876 78999999999999999966799999999999


Q ss_pred             HHHHHhcCCCCChHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 007158          162 LVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTH  241 (615)
Q Consensus       162 ~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~  241 (615)
                      +|+++|+|+.+|+++++++++||.+++  +|.+.||++||++|.+||+.+++.|+++.++++|+++|+.++++|.+||..
T Consensus       199 lI~~eR~Ge~id~~llk~vi~ml~~L~--vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~  276 (759)
T 2hye_C          199 LIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVIT  276 (759)
T ss_dssp             HHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTT
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996  999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhc
Q 007158          242 YLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVT  321 (615)
Q Consensus       242 ~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~  321 (615)
                      ||+++|.++|.++|+++||.+|++.|++   +|+..||++++.++|++||+|+++++++++.++..|++||++.|.+++.
T Consensus       277 yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~  353 (759)
T 2hye_C          277 YLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVI  353 (759)
T ss_dssp             TSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence            9999999999999999999999999985   4899999999999999999999999999999999999999999999997


Q ss_pred             CcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccC-CCcHHHHHHHHHHHhhcCCCCCChhHHH
Q 007158          322 DPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLN-PRSPEFISLFVDDKLRKGLKGVSEEDVE  400 (615)
Q Consensus       322 ~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~-~~~~e~La~y~D~~lk~~~~~~~~~~~e  400 (615)
                      +...   +.+||+.|+++|++|+.++.+||++|+.|.+++++||+.|+|.+ .++||+||+|||.+||+|.++.+++|++
T Consensus       354 ~~~~---~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e  430 (759)
T 2hye_C          354 NPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELE  430 (759)
T ss_dssp             CGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHH
T ss_pred             Cccc---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            6532   36899999999999999999999999999999999999999974 6899999999999999998888899999


Q ss_pred             HHHHHHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHhccchhhHhHHHhhhhHHhhHHHHHHHhh
Q 007158          401 TILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYA  480 (615)
Q Consensus       401 ~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~  480 (615)
                      ..+++++.+|+|+++||+|+.+|+++||+|||.+++++.|.|+.||++||.+||.+||++|++||+|+..|++++..|++
T Consensus       431 ~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~  510 (759)
T 2hye_C          431 RTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQ  510 (759)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCCC--CCCccEEEEEeccCCCCCCCCCCCCCcHhHHHHHHHHHHHHhcCCCCcceeeccCccceEEEEeeCCCcEEEE
Q 007158          481 SHPEL--GDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHEL  558 (615)
Q Consensus       481 ~~~~~--~~~~~~~~~vls~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~g~~~~l  558 (615)
                      +....  +.+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++ +++++
T Consensus       511 ~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~l  589 (759)
T 2hye_C          511 HMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKE-GKKEF  589 (759)
T ss_dssp             HHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSS-CCCEE
T ss_pred             HHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCC-ceEEE
Confidence            76432  3468999999999999998888999999999999999999999999999999999999999999987 78999


Q ss_pred             EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158          559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV  596 (615)
Q Consensus       559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~  596 (615)
                      +||++||+||++||+.++||++||++.|||+.+.|...
T Consensus       590 ~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~  627 (759)
T 2hye_C          590 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRT  627 (759)
T ss_dssp             EEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHH
T ss_pred             EEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999999999999999999888744
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 615
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-111
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 1e-99
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-73
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-71
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  335 bits (859), Expect = e-111
 Identities = 114/351 (32%), Positives = 194/351 (55%), Gaps = 11/351 (3%)

Query: 23  KYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKE 82
            Y + TW+ L  A+  + +  +   + EELY+   N+  HK    LY  L      H++ 
Sbjct: 3   NYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQA 62

Query: 83  ISKSI--EAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTP-VHELGLN 139
                  ++     FL+++N  W DH + + MIR I +++DRTY+      P + ++GL 
Sbjct: 63  QILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLE 122

Query: 140 LWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKP 199
           L+R +I+    +Q++ ++ +L L+ RER+GE ++R L+R+++ ML DL   VY++ FE  
Sbjct: 123 LFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELK 180

Query: 200 FLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEM 259
           FLE +   Y  E Q+ ++  +  EYL    +RL EE +RV  YLD  ++  +   VEK++
Sbjct: 181 FLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL 240

Query: 260 IANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQL 319
           +  H+  ++     GL ++L +++  DL +MY LF RV  G   + +  + +++  G  +
Sbjct: 241 LGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 297

Query: 320 VTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFIN 370
           V +PE+ KD    VQ LLD KDK D++I   F  ++ F N +  SFE FIN
Sbjct: 298 VINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 345
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-58  Score=481.70  Aligned_cols=342  Identities=32%  Similarity=0.624  Sum_probs=322.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHh-c-cchHHHHHH
Q 007158           22 PKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEA-A-QGGSFLEEL   99 (615)
Q Consensus        22 ~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~i~~~l~~-~-~~~~~L~~~   99 (615)
                      ++||+++|..|++||+.|+.+.+++.||+++|+.||++|.+++|++||+++++.+.+++...+..+.. . +++.+|+.+
T Consensus         2 ~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~   81 (347)
T d2hyec2           2 DNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKI   81 (347)
T ss_dssp             CCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999885555532 2 346799999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCChHHHH
Q 007158          100 NRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMR  178 (615)
Q Consensus       100 ~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I~~~R~g~~i~~~~lk  178 (615)
                      .+.|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.++.+.++++++++++|+++|+|+.+|+.+++
T Consensus        82 ~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll~  161 (347)
T d2hyec2          82 NTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLR  161 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            999999999999999999999999998754 5799999999999999987789999999999999999999999999999


Q ss_pred             HHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 007158          179 NIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKE  258 (615)
Q Consensus       179 ~ii~~l~~lg~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~  258 (615)
                      ++++|+..++  +|.+.||++|+++|.+||+.++.+|+++.++++|+++|+.++++|.+|++.|++++|.+++.++++++
T Consensus       162 ~~~~~~~~l~--~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~  239 (347)
T d2hyec2         162 SLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQ  239 (347)
T ss_dssp             HHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHH
T ss_pred             HHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence            9999999986  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhcCcccCCCcHHHHHHHHH
Q 007158          259 MIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLD  338 (615)
Q Consensus       259 Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i~~ll~  338 (615)
                      ||.+|.+.|+.   +|+..||++++.++|++||+|+++++++++.+++.|++||++.|.+++.+...   +.+||+.|++
T Consensus       240 Li~~~~~~il~---~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~~---~~~~V~~ll~  313 (347)
T d2hyec2         240 LLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEK---DKDMVQDLLD  313 (347)
T ss_dssp             HTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGG---TTTHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHhCccc---chHHHHHHHH
Confidence            99999999984   58999999999999999999999999999999999999999999999976543   4789999999


Q ss_pred             HHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc
Q 007158          339 EKDKYDNIISSAFNNDKTFQNALNSSFEYFINL  371 (615)
Q Consensus       339 l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~  371 (615)
                      +|++++.++..||++|+.|.+++++||+.|+|+
T Consensus       314 l~~k~~~li~~~F~~d~~f~~~l~~af~~~iNk  346 (347)
T d2hyec2         314 FKDKVDHVIEVCFQKNERFVNLMKESFETFINK  346 (347)
T ss_dssp             HHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999996
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure