Citrus Sinensis ID: 007159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
Protein Sequence
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHccccccccEEEEcccccccHHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccEEccccccccccHHHcccccccEEEEcccccccHHHHHcccccccccccccccccEEEEEccccccccccccccccccccccccHcccccccccccHHHHcEEEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHccccHHHHEHHHHHHcHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEEEEEHHcccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEccc
Coil and Loop (DISEMBL)
maigsliscrnfgsfvgsgklyekepvifqwkgersgISVLRNtqgnmwnqrlrspmanglisEHANRSMLHVWGNSDEKALKHIAnchtgkehplflqcnekfnriypwkrtnnkcecyfssrhslggwfqpkaedrigtrkgkspqsldvkEDRIcafyksdeyditeakvdslqsteipseavlpdgdlqetspwweqfpKRWVVVLLCFSAFLLCNMDRVNMSIAilpmskefnwnsttVGLIQSSFFWGYLLTQIVGgiwadkfggkpvlgFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMlskwipvsersrsLAFVYSGMYLGsvtglavspiliqkfgwpsvfysfgsLGSIWFALWLKKaysspkedpelrAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNltesglfcvlpwLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGflgpaffltqlshvrtpAMAVLCMAcsqgsdafsqsglysnhqdigprYAGVLLGLSNTAGVLAGVFGTAATGyilqrgswdDVFKVAVVLYIIGTLVWNLFATGERVLE
Flexible Loop (DISEMBL)
maigsliscrnfgsfvgsgklyEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSsrhslggwfqpkaedrigtrkgkspqsldvkeDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKrhilggsiskeavsvIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVwnlfatgervle
Low Complexity Region (SEG)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE
Disordered region (IsUnstruct)
****SLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQ**********************DRICAFYKSDEYDITEA*********************QETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY****************ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG*****
Disordered Region (DISOPRED)
***GS**SCRNFG*FV**********************SVLRNTQGNMWNQRLRSPMANGLISEHANR**********************************************************************************************************************************WEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP*LRA*********************KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVL*
Disordered Region (DISEMBL)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIG*********LDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYS**********EEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE
Disordered Region (DISPRO)
*AIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRI*******************************************************TSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	615	2.2.26 [Sep-21-2011]
Q8GX78	541	Probable anion transporte	yes	no	0.783	0.890	0.810	0.0
Q652N5	591	Probable anion transporte	yes	no	0.809	0.842	0.764	0.0
Q9SDI4	529	Probable anion transporte	no	no	0.674	0.784	0.833	0.0
O82390	512	Sodium-dependent phosphat	no	no	0.699	0.839	0.769	0.0
Q7XJR2	512	Probable anion transporte	no	no	0.736	0.884	0.406	4e-94
Q8W0H5	519	Probable anion transporte	no	no	0.642	0.761	0.414	1e-87
Q3E9A0	517	Probable anion transporte	no	no	0.697	0.829	0.408	2e-87
Q66GI9	533	Probable anion transporte	no	no	0.642	0.741	0.411	2e-86
Q53WP9	535	Probable anion transporte	no	no	0.673	0.773	0.405	2e-84
Q2QWW7	439	Probable anion transporte	no	no	0.673	0.943	0.360	3e-77

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/492 (81%), Positives = 440/492 (89%), Gaps = 10/492 (2%)

Query: 124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
           R S G + QP+ +  I  R         +K +R  A+YKS+E DITE  V S   +   +
Sbjct: 60  RRSFGCFLQPRMDSVIRFRN-------SIKINRSRAYYKSEESDITEGVVPSADGS---A 109

Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
           EA+L +G+LQ  SPWW+QFP+RWV+VLLCFS+FLLCNMDRVNMSIAILPMS+E+NW+S T
Sbjct: 110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169

Query: 244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
           VGLIQSSFFWGYLLTQI+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct: 170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229

Query: 304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
           RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct: 230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289

Query: 364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 423
           SVFYSFGSLGSIWF LWLK AYSSPK+DP+L  EEK+ ILGGS  +E V+VIPWKLILSK
Sbjct: 290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349

Query: 424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 483
            PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct: 350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409

Query: 484 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 543
           ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGL
Sbjct: 410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGL 469

Query: 544 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 603
           YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLV
Sbjct: 470 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLV 529

Query: 604 WNLFATGERVLE 615
           WNLFATGE++L+
Sbjct: 530 WNLFATGEKILD 541

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/502 (76%), Positives = 431/502 (85%), Gaps = 4/502 (0%)

Query: 114 NNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKV 173
             + EC+ +S     GW +P+  D   +      Q       R  A  K+++Y+IT +  
Sbjct: 94  RRRIECFLTSDPINTGWLKPRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSP- 152

Query: 174 DSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPM 233
             L  +++P+EAVL  GD  E SPWW+QFPKRW VVLLCF +FLLCNMDRVNMSIAILPM
Sbjct: 153 --LSPSDVPAEAVL-IGDTNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPM 209

Query: 234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA 293
           S EF W+  TVGLIQSSFFWGYLLTQI+GGIWAD+FGGK VLGFGV+WWS+ATVLTP+AA
Sbjct: 210 SSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAA 269

Query: 294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS 353
           +IGLPFLL+MRAFMGIGEGVAMPAMNN+LSKW+PVSERSRSLA VYSGMYLGSVTGLA S
Sbjct: 270 KIGLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFS 329

Query: 354 PILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS 413
           P+LI +FGWPSVFY+FGSLGS+WFALW +KA+SSP EDPEL   EKR+ILGGS  KE V+
Sbjct: 330 PLLISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVT 389

Query: 414 VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 473
            IPWKLILSK PVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTM
Sbjct: 390 SIPWKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTM 449

Query: 474 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           A+FAN+GGWIADTLV +G+SIT VRKIMQSIGFLGPA FLT LS VRTPAMAVLCMACSQ
Sbjct: 450 AIFANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQ 509

Query: 534 GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVA 593
           GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ+GSWD VF+VA
Sbjct: 510 GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVA 569

Query: 594 VVLYIIGTLVWNLFATGERVLE 615
           VVLYI+GT+VWN+F+TGE+VLE
Sbjct: 570 VVLYIVGTVVWNVFSTGEKVLE 591

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/415 (83%), Positives = 373/415 (89%)

Query: 201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQI 260
           QFPKRW +V LCFSAFLLCNMDRVNMSIAILPMS EF WN  TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 261 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320
            GGIWAD  GGK VLGFGVIWWS+AT LTP AA++GLPFLL+ RAFMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
           +LSKW+PVSERSRSLA VYSGMYLGSVTGLA SP+LI  FGWPSVFYSFGSLG  WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 381 LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT 440
             KAYSSP EDP + AEEK+ I   +   E V  IPW LILSK PVWALI+SHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354

Query: 441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKI 500
           FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV AN GGWIADTLVS+GLS+T VRKI
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414

Query: 501 MQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 560
           MQSIGFLGPAFFLTQLSH+ +PAMAVLCMACSQG+DAFSQSGLYSNHQDIGPRYAGVLLG
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLG 474

Query: 561 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE 615
           LSNTAGVLAGVFGTAATGYILQ GSWDDVFKV+VVLY++GTLVWNLF+TGE++++
Sbjct: 475 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/430 (76%), Positives = 373/430 (86%)

Query: 186 VLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVG 245
           V+ D       PWWE+FPKRWV+VLLCFSAFLLCNMDRVNMSIAILPMS E+ WN  TVG
Sbjct: 83  VVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVG 142

Query: 246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 305
           LIQSSFFWGYLLTQI GGIWAD  GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RA
Sbjct: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRA 202

Query: 306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 365
           FMG+GEGVAMPAMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSV
Sbjct: 203 FMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSV 262

Query: 366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
           FYSFGSLG++W  LWL KA SSP EDP L  EE++ I     SKE V  IPW+LILSK P
Sbjct: 263 FYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPP 322

Query: 426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 485
           VWALI  HFCHNWGTFILLTWMPTYY+QVLKFNL ESGL  V PW+TMA+ AN GGWIAD
Sbjct: 323 VWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIAD 382

Query: 486 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 545
           TLVS+G S+T VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQG+DAFSQSGLYS
Sbjct: 383 TLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYS 442

Query: 546 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 605
           NHQDI PRY+GVLLGLSNTAGVLAGV GTAATG+ILQ GSWDDVF ++V LY++GT++WN
Sbjct: 443 NHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWN 502

Query: 606 LFATGERVLE 615
           LF+TGE++++
Sbjct: 503 LFSTGEKIID 512

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  345 bits (886), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/460 (40%), Positives = 270/460 (58%), Gaps = 7/460 (1%)

Query: 162 KSDEYDITEAKVDSLQSTE-IPSEAVLPDGDLQET-SPWWEQFPKRWVVVLLCFSAFLLC 219
           +SD      A     QS E   +E VL  G   E  +      P+R  VV+L      LC
Sbjct: 53  ESDGKRRNAAAKKRNQSPERCAAEGVLTGGGGSEAIAEVRTMMPERIKVVILTACMMCLC 112

Query: 220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGV 279
           N DRV MS+A++P++ +  W+S+ +G++QSSF WGY+ + ++GG   D++GGK VL +GV
Sbjct: 113 NADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGV 172

Query: 280 IWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 339
             WS+AT+LTP AA      LL +RAF G+ EGVAMP+M  +LS+W P+ ER+ ++    
Sbjct: 173 ALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISM 232

Query: 340 SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 399
           +G ++G+V GL ++P+++   G    F  F SLG +W + W     ++P++ P +   E 
Sbjct: 233 AGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSEL 292

Query: 400 RHILGGS-ISKEAVSVIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL 455
           R I  G  +    +S  P    +L+LSK P WA+I ++  +NWG F+LL+WMP Y+  V 
Sbjct: 293 RLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVF 352

Query: 456 KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ 515
             NL ++  F  LPW TMA+     G  +D L+  G S+T+VRKIMQSIGF+GP   L  
Sbjct: 353 NVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLC 412

Query: 516 LSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTA 575
           L+  ++P+ A + M  +    +FSQ+G   N QDI P+YAG L G+SN AG LA +  T 
Sbjct: 413 LNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTI 472

Query: 576 ATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 614
            TGY +Q  GS+     V   LY   T+ W LFATGERV 
Sbjct: 473 GTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF 512

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  324 bits (831), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/403 (41%), Positives = 243/403 (60%), Gaps = 8/403 (1%)

Query: 219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG 278
           CN DRV MS+AI+P+S+ + W  +  G++QSSF WGYL++ I+GG   D +GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170

Query: 279 VIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV 338
           V  WS+AT L+P AA   L   L  R  +G+ EGVA+P+MNNM+ +W P +ERS ++   
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230

Query: 339 YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 398
            +G  LG+  GL +SPI++ + G    F  FG  G +W  +W+     +P E+ ++ A E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290

Query: 399 KRHILGG-------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY 451
             +I  G       S  +    V P+  +LSK P WALI ++  H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350

Query: 452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF 511
             +   NL E+  F  LPW+ MAV   + G ++D L+  G SIT  RKIMQ+IGF+GP  
Sbjct: 351 KTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGV 410

Query: 512 FLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGV 571
            L  L+  ++P +A   +  + G  +F  SG   N Q+I P+YAGVL G+SNTAG  A +
Sbjct: 411 ALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAI 470

Query: 572 FGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATGERV 613
            GT   G+ + R GS+     +  +LY   TL W++FATGERV
Sbjct: 471 LGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 513

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  323 bits (828), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/450 (40%), Positives = 266/450 (59%), Gaps = 21/450 (4%)

Query: 174 DSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPM 233
           D      IP E +  +   ++  P W+  P+R+ ++     AF++CNMD+VN+SIAI+PM
Sbjct: 68  DPKPQLPIP-EVLSTETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPM 126

Query: 234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA 293
           S +F W+S+  GL+QSSFFWGY L+Q+ GG  +  FGG+ VL  GV  WS AT L P+ A
Sbjct: 127 SHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLA 186

Query: 294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS 353
              +P L+  R  +GIGEGV+  A  +++++ IPV ERSR++ FV+ G+ LGSV GL ++
Sbjct: 187 GF-MPGLIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLA 245

Query: 354 PILIQKFGWPSVFYSFGSLGSIWFA--LWLKKAYSSPKEDPELRAEEK-----RHILGGS 406
           P +I+ F W SVFY FG LG  WF    +L +   S K + E+    K     +  LG S
Sbjct: 246 PPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSS 304

Query: 407 ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFC 466
           + +     IPWK       VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+    
Sbjct: 305 LKE-----IPWKSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVS 359

Query: 467 VLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT---PA 523
           +LP L   V  ++    AD L++ G+  T VRKI Q+I F+ PA  +T LS V     P 
Sbjct: 360 ILPPLASIVVTSLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMT-LSSVDIGLPPW 418

Query: 524 MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 583
             V  +       +F+ SGLY  HQDI P YA +LLG++NT G + G+ G A TG++L  
Sbjct: 419 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDS 478

Query: 584 G-SWD-DVFKVAVVLYIIGTLVWNLFATGE 611
             SW   +F  ++  Y+ GT+VW  FA+ E
Sbjct: 479 THSWTMSLFVPSIFFYLTGTVVWLAFASSE 508

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  320 bits (820), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/403 (41%), Positives = 247/403 (61%), Gaps = 8/403 (1%)

Query: 219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG 278
           CN DRV MS+AI+P+S    W+ +  G++QSSF WGYL++ I GG   D++GGK V+ +G
Sbjct: 125 CNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWG 184

Query: 279 VIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV 338
           V  WS+AT LTP AA   L  LL  RA +G+ EGVA+P MNNM+++W P +ERSR++   
Sbjct: 185 VALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIA 244

Query: 339 YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 398
            +G  LG+V GL +SPIL+ + G    F  FG  G +W  +WL    S+P   P++   E
Sbjct: 245 MAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSE 304

Query: 399 KRHILG----GSISKEAVS---VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY 451
             +I       ++  + +S   + P+  +LSK P WA+I+++  H+WG F++L+WMP Y+
Sbjct: 305 LEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYF 364

Query: 452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF 511
           N V   NL ++  F  +PW  MA    + G+ +D L+ +G SIT  RKIMQSIGF+GP  
Sbjct: 365 NSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGI 424

Query: 512 FLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGV 571
            L  L+  + P +A   ++ + G  +FS  G   N Q+I P Y+GVL G+  TAG LA +
Sbjct: 425 ALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLHGMCLTAGTLAAI 484

Query: 572 FGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERV 613
            GT   G+ ++  GS+     +  +LY++  L +N++ATGERV
Sbjct: 485 VGTVGAGFFVELLGSFQGFILLTAILYLLSALFYNIYATGERV 527

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  313 bits (803), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/417 (40%), Positives = 245/417 (58%), Gaps = 3/417 (0%)

Query: 202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIV 261
            P+R  VV L  +  LLCN DRV MS+A++P + ++ W+S+ +G++QSSF WGY+ + +V
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 262 GGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 321
           GG  AD++GGK V+      WS+AT LTP AA      LL +RA  G+ EGVA P M+  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 322 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL 381
           L KW P  ER+ ++     G +LG+V     +PI++   G    F  F SLG +W ++WL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 382 KKAYSSPKEDPELRAEEKRHILGG-SISKEAVSVIP-WKLILSKAPVWALIISHFCHNWG 439
               S P +   +   E + IL G S SK   S  P  + ILSK  +WA+I+++  +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358

Query: 440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 499
            F+LL+WMP Y+  V   NL ++  F  +PW  MA+   + G  AD L+  G S+  VRK
Sbjct: 359 YFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRK 418

Query: 500 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 559
           IMQSIGF+GP   L  L   +TP++A + M  +    +FSQ+G + N QDI P+YAG L 
Sbjct: 419 IMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLH 478

Query: 560 GLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE 615
           GL+N  G +A +  T  TGY +Q  GS+     +  VLY   T+ +N +ATG+ + +
Sbjct: 479 GLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLIFD 535

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  290 bits (742), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 252/433 (58%), Gaps = 19/433 (4%)

Query: 201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQI 260
           +FPKR+V+VLL F    +C ++RV  SIA    +     N    G+I S F++GY+L+QI
Sbjct: 8   KFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQI 67

Query: 261 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320
            GG  A + GG+ VL    + WS+   L P+  +  +  L++ R F+G+ +G   PA++ 
Sbjct: 68  PGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHT 126

Query: 321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
           +L++W+P  ERSRS++   SGMYLG+  G+   P L++  G  SVF+    LG  W  +W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186

Query: 381 LKKAYSSPKED------PELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF 434
           LK +   P+ D      P++ + EK     G +       IPW+ I+   PVWA+++++F
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVKIPWRRIIFSLPVWAIVVNNF 246

Query: 435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LS 493
             ++  ++L+ W+PTY+   L+ +L + G   +LP+  M +F+N+GG +AD L+++  LS
Sbjct: 247 TFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILS 306

Query: 494 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR 553
           IT  RK++ +IGF+  A  L  L   RTP+  VLC + S G  A  ++G   NH D+ P+
Sbjct: 307 ITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAPK 366

Query: 554 YAGVLLGLSNTAGVLAGVFGTAATGYILQRG-----------SWDDVFKVAVVLYIIGTL 602
           +AG+++G+SNTAG LAG+ G   TG IL+             +W  VF V   L I  ++
Sbjct: 367 FAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSSI 426

Query: 603 VWNLFATGERVLE 615
           ++ +F+TGE++ E
Sbjct: 427 IFLIFSTGEKIFE 439

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
225454266	615	PREDICTED: probable anion transporter 2,	0.996	0.996	0.763	0.0
255541620	571	Sialin, putative [Ricinus communis] gi|2	0.928	1.0	0.751	0.0
297745310	575	unnamed protein product [Vitis vinifera]	0.931	0.996	0.734	0.0
356520396	592	PREDICTED: probable anion transporter 2,	0.949	0.986	0.707	0.0
356504368	593	PREDICTED: probable anion transporter 2,	0.960	0.996	0.705	0.0
449432150	600	PREDICTED: probable anion transporter 2,	0.969	0.993	0.709	0.0
449480201	600	PREDICTED: probable anion transporter 2,	0.969	0.993	0.709	0.0
357514557	588	Sodium-dependent phosphate transport pro	0.952	0.996	0.693	0.0
356576959	597	PREDICTED: probable anion transporter 2,	0.967	0.996	0.700	0.0
30678625	541	putative anion transporter 2 [Arabidopsi	0.783	0.890	0.810	0.0

>gi|225454266|ref|XP_002275090.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Vitis vinifera]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/617 (76%), Positives = 511/617 (82%), Gaps = 4/617 (0%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIG +IS RNFGSF+GSGK Y+ EP   Q KG R   SV  + + N   +RL   M N 
Sbjct: 1   MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEH--PLFLQCNEKFNRIYPWKRTNNKCE 118
            IS +++   L V G+ D KAL  IA  H       P+ LQ ++KF  + P +R    C+
Sbjct: 59  SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS  SL  W QP    R+G    +S  S  V+  R  + YKS EYDI  A VDSL+S
Sbjct: 119 CYLSSNPSLSSWIQPSKRARLGISDSQSQSSEHVRFGRTRSAYKSKEYDIKGADVDSLKS 178

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           +E   E +L + +LQ  SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 179 SEGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 238

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 239 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 298

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 299 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 358

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL  EEKR ILGGS SKE VS IPWK
Sbjct: 359 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 418

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 478

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 538
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQGSDAF
Sbjct: 479 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQGSDAF 538

Query: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 598
           SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW DVFKVAVVLYI
Sbjct: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWGDVFKVAVVLYI 598

Query: 599 IGTLVWNLFATGERVLE 615
           IGTLVWNLFATGE++L+
Sbjct: 599 IGTLVWNLFATGEKILD 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541620|ref|XP_002511874.1| Sialin, putative [Ricinus communis] gi|223549054|gb|EEF50543.1| Sialin, putative [Ricinus communis]

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/615 (75%), Positives = 502/615 (81%), Gaps = 44/615 (7%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSLIS RN GSF+GSGK+  +E  I Q KGER  I+  R   GN++ ++  S MA  
Sbjct: 1   MAIGSLISNRNLGSFIGSGKV--REQAILQHKGERPSIAAARFAHGNIFYRKCHSQMAIS 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
             S  +   +L V  +S EK  K +A                      P +R+  +C C 
Sbjct: 59  YTSGFSCSPVLRVTNHSSEKTSKSLA---------------------VPLQRSLGRCNC- 96

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTE 180
            SS   +G W Q          KG+      VK +R  A YKS+EYDIT       Q+ E
Sbjct: 97  -SSYPFVGNWLQ--------LTKGQFQHFEFVKVNRTRAHYKSEEYDIT-------QAAE 140

Query: 181 IPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN 240
             SEAVL +G+L    PWWEQFPKRWV+VLLCF AFLLCNMDRVNMSIAILPMS+EFNWN
Sbjct: 141 GSSEAVLVEGNL----PWWEQFPKRWVIVLLCFMAFLLCNMDRVNMSIAILPMSQEFNWN 196

Query: 241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL 300
           S TVGLIQSSFFWGYL+TQIVGGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLPFL
Sbjct: 197 SATVGLIQSSFFWGYLMTQIVGGIWADKIGGKLVLGFGVVWWSIATVLTPIAARIGLPFL 256

Query: 301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF 360
           L+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSV GLAVSP+LIQKF
Sbjct: 257 LMMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVMGLAVSPVLIQKF 316

Query: 361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI 420
           GWPSVFYSFGSLGSIWFALWL+KAYSSPKEDPEL A+EK+ ILGGS+SKE VSVIPWKLI
Sbjct: 317 GWPSVFYSFGSLGSIWFALWLRKAYSSPKEDPELSAQEKKLILGGSVSKEPVSVIPWKLI 376

Query: 421 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 480
           LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA FAN+G
Sbjct: 377 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFFANIG 436

Query: 481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 540
           GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ
Sbjct: 437 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 496

Query: 541 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 600
           SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG
Sbjct: 497 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 556

Query: 601 TLVWNLFATGERVLE 615
           TLVWNLF+TGE++L+
Sbjct: 557 TLVWNLFSTGEKILD 571

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745310|emb|CBI40390.3| unnamed protein product [Vitis vinifera]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/617 (73%), Positives = 488/617 (79%), Gaps = 44/617 (7%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIG +IS RNFGSF+GSGK Y+ EP   Q KG R   SV  + + N   +RL   M N 
Sbjct: 1   MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEH--PLFLQCNEKFNRIYPWKRTNNKCE 118
            IS +++   L V G+ D KAL  IA  H       P+ LQ ++KF  + P +R    C+
Sbjct: 59  SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS  SL  W QP    R+                                       
Sbjct: 119 CYLSSNPSLSSWIQPSKRARL--------------------------------------- 139

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
            E   E +L + +LQ  SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 140 -EGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 198

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 199 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 258

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 259 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 318

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL  EEKR ILGGS SKE VS IPWK
Sbjct: 319 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 378

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 379 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 438

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 538
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQGSDAF
Sbjct: 439 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQGSDAF 498

Query: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 598
           SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW DVFKVAVVLYI
Sbjct: 499 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWGDVFKVAVVLYI 558

Query: 599 IGTLVWNLFATGERVLE 615
           IGTLVWNLFATGE++L+
Sbjct: 559 IGTLVWNLFATGEKILD 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520396|ref|XP_003528848.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/623 (70%), Positives = 491/623 (78%), Gaps = 39/623 (6%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKG--ERSGISVLRNTQGNMWNQRLRSPMA 58
           M +  LIS RNF SF  SG +Y     I   +G    SG+SV ++     W  ++  P+ 
Sbjct: 1   MTMTGLISNRNFASFFASGNVYRSGKDISVQRGGISISGVSVAKDPFPR-WQHKMYLPL- 58

Query: 59  NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFL-----QCNEKFNRIYPWKRT 113
                              +E+  K +   +   EH   +     QCN K        + 
Sbjct: 59  -------------------EERVSKQMQTSNNKGEHRSLVSQQSSQCNFKL-------KA 92

Query: 114 NNKCECYFSSRHSLGGWFQPKAE-DRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAK 172
           + +  C F      G       E  R+G  K K  Q+   K ++    YKS+EYDI+E K
Sbjct: 93  SGRSRCSFLCSAPYGTNNVGHGEVYRLGLSKRKHAQTEVGKTNKFRVCYKSEEYDISETK 152

Query: 173 VDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILP 232
           +D LQSTE   EA+L +G     SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILP
Sbjct: 153 MDPLQSTEGTGEAILLEG---RASPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILP 209

Query: 233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA 292
           MS+EFNWNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGV+WWS+ATVLTP+A
Sbjct: 210 MSQEFNWNSATVGLIQSSFFWGYLLTQIIGGIWADKLGGKLVLGFGVVWWSIATVLTPIA 269

Query: 293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV 352
           A++GLP LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA 
Sbjct: 270 AKLGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAF 329

Query: 353 SPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAV 412
           SPILIQKFGWPSVFYSFGSLGSIWF LWL KAYSSPKEDP+L AEEK+ ILGG++SKE V
Sbjct: 330 SPILIQKFGWPSVFYSFGSLGSIWFVLWLSKAYSSPKEDPDLGAEEKKLILGGNVSKEPV 389

Query: 413 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
           SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT
Sbjct: 390 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 449

Query: 473 MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 532
           MA+FAN+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHV+TPAMAVLCMACS
Sbjct: 450 MAIFANIGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACS 509

Query: 533 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 592
           QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV
Sbjct: 510 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 569

Query: 593 AVVLYIIGTLVWNLFATGERVLE 615
           AV LYIIGTLVWN+F+TGE++L+
Sbjct: 570 AVALYIIGTLVWNIFSTGEKILD 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504368|ref|XP_003520968.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/617 (70%), Positives = 485/617 (78%), Gaps = 26/617 (4%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYE--KEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMA 58
           M +  LIS RNFGSFV SG +Y   K+  + +     SG+SV ++     W  ++  PM 
Sbjct: 1   MTMSGLISNRNFGSFVASGNVYRSGKDISVQRMGISVSGVSVAKDPSPR-WQHQMYLPM- 58

Query: 59  NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCE 118
                              +++  K +   H   EH   +         +  K       
Sbjct: 59  -------------------EKRVSKPMQTSHNKGEHRSLVSQQSSQCLNFKLKACGRSHS 99

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
            +  S          +   R+G  K K  ++   K ++    YKS+EYDI+E K+D LQS
Sbjct: 100 SFLFSAPYGSNNVGHQEVYRLGLSKRKHAKTEVGKANKFRVCYKSEEYDISETKMDPLQS 159

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           TE   EA+L +G      PWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 160 TEGTGEAILLEG---RALPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQEFN 216

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+ATVLTP+AA+ GLP
Sbjct: 217 WNSATVGLIQSSFFWGYLLTQIVGGIWADKLGGKLVLGFGVVWWSIATVLTPIAAKFGLP 276

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
            LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LIQ
Sbjct: 277 CLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLIQ 336

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWF LWL KAYSSP EDP+L AEEK+ ILGG++SKE VSVIPWK
Sbjct: 337 KFGWPSVFYSFGSLGSIWFVLWLSKAYSSPDEDPDLGAEEKKFILGGNVSKEPVSVIPWK 396

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA+FAN
Sbjct: 397 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAIFAN 456

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 538
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF
Sbjct: 457 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 516

Query: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 598
           SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LYI
Sbjct: 517 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYI 576

Query: 599 IGTLVWNLFATGERVLE 615
           IGTLVWN+F+TGE++L+
Sbjct: 577 IGTLVWNIFSTGEKILD 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432150|ref|XP_004133863.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/619 (70%), Positives = 482/619 (77%), Gaps = 23/619 (3%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSL+S RN GSFVGSGK+ + E        ERS I   +  Q N+++++      N 
Sbjct: 1   MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
              + A  + L      D K  K +  C      P              W R   KC CY
Sbjct: 61  SSPKIACSTFLQSI-TRDGKLFKPLGVCTDETAGPRLPFIKSTIT----WPR--RKCRCY 113

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
                       P+         G S     +S  VK DR  A YKS+++D+T+  VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161

Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE 236
              E   +A   + + Q  SPWWE FPKRWV+VLLCF +FLLCNMDRVNMSIAILPMSKE
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221

Query: 237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 296
           FNWNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281

Query: 297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 356
           LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341

Query: 357 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 416
           I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I  GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401

Query: 417 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 476
           WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461

Query: 477 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 536
           AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 521

Query: 537 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL 596
           AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSWDDVFKV+V L
Sbjct: 522 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWDDVFKVSVAL 581

Query: 597 YIIGTLVWNLFATGERVLE 615
           YIIGTLVWN+FATGE++L+
Sbjct: 582 YIIGTLVWNIFATGEKILD 600

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480201|ref|XP_004155828.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus]

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/619 (70%), Positives = 482/619 (77%), Gaps = 23/619 (3%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSL+S RN GSFVGSGK+ + E        ERS I   +  Q N+++++      N 
Sbjct: 1   MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
              + A  + L      D K  K +  C      P              W R   KC CY
Sbjct: 61  SSPKIACFTFLQSI-TRDGKLFKPLGVCTDETAGPRLPFIKSTIT----WPR--RKCRCY 113

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
                       P+         G S     +S  VK DR  A YKS+++D+T+  VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161

Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE 236
              E   +A   + + Q  SPWWE FPKRWV+VLLCF +FLLCNMDRVNMSIAILPMSKE
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221

Query: 237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 296
           FNWNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281

Query: 297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 356
           LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341

Query: 357 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 416
           I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I  GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401

Query: 417 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 476
           WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461

Query: 477 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 536
           AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 521

Query: 537 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL 596
           AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSWDDVFKV+V L
Sbjct: 522 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWDDVFKVSVAL 581

Query: 597 YIIGTLVWNLFATGERVLE 615
           YIIGTLVWN+FATGE++L+
Sbjct: 582 YIIGTLVWNIFATGEKILD 600

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514557|ref|XP_003627567.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355521589|gb|AET02043.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/617 (69%), Positives = 484/617 (78%), Gaps = 31/617 (5%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MA+  LIS RNFGSF+ SG  Y  +  I     +R GISV   T       R    +A G
Sbjct: 1   MAMSGLISNRNFGSFIASGNSYRSQKDISH---QRVGISVSGVTV-----TRCGGCVAKG 52

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
            +S   N +  H+    +E+  K I      +E   PL  QC+   N      +      
Sbjct: 53  SLSRCPNATRSHIDSPLEERVSKQIQTFDNKRELFSPLSRQCSRGLNIKL---KACKISH 109

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS        + +  ++   R                  YK++EY+  E  +D LQ 
Sbjct: 110 CYLSSSTFSSSNVEQRKANKFQVR------------------YKAEEYEFAEPNIDGLQP 151

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           T+   EA+L +G+L +TSPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS++FN
Sbjct: 152 TDGTGEAILLEGNLLQTSPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQQFN 211

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI GGIWADK GGK VLGFGV+WWS+ATVLTP+AA++GLP
Sbjct: 212 WNSATVGLIQSSFFWGYLLTQIAGGIWADKVGGKLVLGFGVVWWSIATVLTPIAAKLGLP 271

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           +LL+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGL  SP LIQ
Sbjct: 272 YLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLGFSPFLIQ 331

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL+ AYS+PK+DP L  EEKR ILGG++SKE V+VIPWK
Sbjct: 332 KFGWPSVFYSFGSLGSIWFALWLRNAYSTPKDDPNLGDEEKRLILGGNVSKEPVTVIPWK 391

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 392 LILSKAPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 451

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 538
           +GGWIADTLVSKG SIT VRKIMQSIGFLGPAFFLTQLS+VRTPAMAVLCMACSQG DAF
Sbjct: 452 IGGWIADTLVSKGFSITTVRKIMQSIGFLGPAFFLTQLSNVRTPAMAVLCMACSQGCDAF 511

Query: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 598
           SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW+DVFKV+VVLY+
Sbjct: 512 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVVLYL 571

Query: 599 IGTLVWNLFATGERVLE 615
           IGTLVWN+F+TGE++L+
Sbjct: 572 IGTLVWNIFSTGEKILD 588

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576959|ref|XP_003556597.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/617 (70%), Positives = 484/617 (78%), Gaps = 22/617 (3%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MA+G L+S RNF  F+G G +Y+    +     +R GIS         +  R    +A  
Sbjct: 1   MALGGLVSNRNFTCFIGPGSVYQLGKDL---SPQRGGISC-------AFVARYGGQIAKD 50

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEH--PLFLQCNEKFNRIYPWKRTNNKCE 118
             S   +    H     +EK  K I   H   +H  PL  +     N      + + +C+
Sbjct: 51  PFSRCWHGMCFHAKEPLNEKVSKPIPTFHDEVQHCSPLSQKSIHCMNMKL---KASRRCQ 107

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
            + SS        Q +A   +G  K     +  V        YKS+E+DITEAKVD L+S
Sbjct: 108 YFLSSDPYSSSLIQQRAVYGLGLNKLGKANTARVH-------YKSEEHDITEAKVDPLES 160

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           TE   E++L +G++ + S WW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 161 TEGTGESILLEGNVPQVSSWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 220

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLP
Sbjct: 221 WNSATVGLIQSSFFWGYLLTQILGGIWADKIGGKLVLGFGVVWWSMATVLTPIAARIGLP 280

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
            LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSV GLA SP+LIQ
Sbjct: 281 CLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQ 340

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL+KAYSSPK+DP+L  EEKR IL G++S   VS IPWK
Sbjct: 341 KFGWPSVFYSFGSLGSIWFALWLRKAYSSPKDDPDLGVEEKRLILEGNVSNAPVSSIPWK 400

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL ESGL CVLPWLTMA FAN
Sbjct: 401 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLMESGLLCVLPWLTMAAFAN 460

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 538
           +GGWIADTLV KGLSIT VRKIMQSIGFLGPAFFL+QLSHVRTPAMAVLCMACSQGSDAF
Sbjct: 461 IGGWIADTLVRKGLSITVVRKIMQSIGFLGPAFFLSQLSHVRTPAMAVLCMACSQGSDAF 520

Query: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 598
           SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSW+DVFKVAV LYI
Sbjct: 521 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWNDVFKVAVALYI 580

Query: 599 IGTLVWNLFATGERVLE 615
           IGTLVWN+F+TGE+VL+
Sbjct: 581 IGTLVWNVFSTGEKVLD 597

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678625|ref|NP_567175.2| putative anion transporter 2 [Arabidopsis thaliana] gi|75244391|sp|Q8GX78.1|ANTR2_ARATH RecName: Full=Probable anion transporter 2, chloroplastic; AltName: Full=Phosphate transporter PHT4;4; Flags: Precursor gi|26451814|dbj|BAC43000.1| unknown protein [Arabidopsis thaliana] gi|32306495|gb|AAP78931.1| At4g00370 [Arabidopsis thaliana] gi|332656470|gb|AEE81870.1| putative anion transporter 2 [Arabidopsis thaliana]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/492 (81%), Positives = 440/492 (89%), Gaps = 10/492 (2%)

Query: 124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
           R S G + QP+ +  I  R         +K +R  A+YKS+E DITE  V S   +   +
Sbjct: 60  RRSFGCFLQPRMDSVIRFRN-------SIKINRSRAYYKSEESDITEGVVPSADGS---A 109

Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
           EA+L +G+LQ  SPWW+QFP+RWV+VLLCFS+FLLCNMDRVNMSIAILPMS+E+NW+S T
Sbjct: 110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169

Query: 244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
           VGLIQSSFFWGYLLTQI+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct: 170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229

Query: 304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
           RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct: 230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289

Query: 364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 423
           SVFYSFGSLGSIWF LWLK AYSSPK+DP+L  EEK+ ILGGS  +E V+VIPWKLILSK
Sbjct: 290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349

Query: 424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 483
            PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct: 350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409

Query: 484 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 543
           ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGL
Sbjct: 410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGL 469

Query: 544 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 603
           YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLV
Sbjct: 470 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLV 529

Query: 604 WNLFATGERVLE 615
           WNLFATGE++L+
Sbjct: 530 WNLFATGEKILD 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.783	0.890	0.810	1.2e-225
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.699	0.839	0.769	3.3e-189
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.710	0.853	0.414	2.4e-92
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.694	0.825	0.408	7.5e-89
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.611	0.759	0.388	1.1e-76
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.611	0.759	0.382	4.1e-75
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.609	0.774	0.384	5.2e-75
RGD|1311388	495	Slc17a5 "solute carrier family	0.604	0.751	0.384	4.7e-74
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.611	0.759	0.377	1.2e-73
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.611	0.759	0.380	2.5e-73

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 2123 (752.4 bits), Expect = 1.2e-225, Sum P(2) = 1.2e-225
 Identities = 399/492 (81%), Positives = 440/492 (89%)

Query:   124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
             R S G + QP+ +  I  R         +K +R  A+YKS+E DITE  V S   +   +
Sbjct:    60 RRSFGCFLQPRMDSVIRFRNS-------IKINRSRAYYKSEESDITEGVVPSADGS---A 109

Query:   184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
             EA+L +G+LQ  SPWW+QFP+RWV+VLLCFS+FLLCNMDRVNMSIAILPMS+E+NW+S T
Sbjct:   110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169

Query:   244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
             VGLIQSSFFWGYLLTQI+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct:   170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229

Query:   304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
             RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct:   230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289

Query:   364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 423
             SVFYSFGSLGSIWF LWLK AYSSPK+DP+L  EEK+ ILGGS  +E V+VIPWKLILSK
Sbjct:   290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349

Query:   424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 483
              PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct:   350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409

Query:   484 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 543
             ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGL
Sbjct:   410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGL 469

Query:   544 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 603
             YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLV
Sbjct:   470 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLV 529

Query:   604 WNLFATGERVLE 615
             WNLFATGE++L+
Sbjct:   530 WNLFATGEKILD 541

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
 Identities = 331/430 (76%), Positives = 373/430 (86%)

Query:   186 VLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVG 245
             V+ D       PWWE+FPKRWV+VLLCFSAFLLCNMDRVNMSIAILPMS E+ WN  TVG
Sbjct:    83 VVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVG 142

Query:   246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 305
             LIQSSFFWGYLLTQI GGIWAD  GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RA
Sbjct:   143 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRA 202

Query:   306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 365
             FMG+GEGVAMPAMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSV
Sbjct:   203 FMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSV 262

Query:   366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
             FYSFGSLG++W  LWL KA SSP EDP L  EE++ I     SKE V  IPW+LILSK P
Sbjct:   263 FYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPP 322

Query:   426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 485
             VWALI  HFCHNWGTFILLTWMPTYY+QVLKFNL ESGL  V PW+TMA+ AN GGWIAD
Sbjct:   323 VWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIAD 382

Query:   486 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 545
             TLVS+G S+T VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQG+DAFSQSGLYS
Sbjct:   383 TLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYS 442

Query:   546 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 605
             NHQDI PRY+GVLLGLSNTAGVLAGV GTAATG+ILQ GSWDDVF ++V LY++GT++WN
Sbjct:   443 NHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWN 502

Query:   606 LFATGERVLE 615
             LF+TGE++++
Sbjct:   503 LFSTGEKIID 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 184/444 (41%), Positives = 266/444 (59%)

Query:   177 QSTE-IPSEAVLPDGDLQET-SPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMS 234
             QS E   +E VL  G   E  +      P+R  VV+L      LCN DRV MS+A++P++
Sbjct:    68 QSPERCAAEGVLTGGGGSEAIAEVRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLA 127

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
              +  W+S+ +G++QSSF WGY+ + ++GG   D++GGK VL +GV  WS+AT+LTP AA 
Sbjct:   128 DKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAA 187

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
                  LL +RAF G+ EGVAMP+M  +LS+W P+ ER+ ++    +G ++G+V GL ++P
Sbjct:   188 HSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTP 247

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGS-ISKEAVS 413
             +++   G    F  F SLG +W + W     ++P++ P +   E R I  G  +    +S
Sbjct:   248 LMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTIS 307

Query:   414 VIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPW 470
               P    +L+LSK P WA+I ++  +NWG F+LL+WMP Y+  V   NL ++  F  LPW
Sbjct:   308 PKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPW 367

Query:   471 LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMA 530
              TMA+     G  +D L+  G S+T+VRKIMQSIGF+GP   L  L+  ++P+ A + M 
Sbjct:   368 ATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMT 427

Query:   531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDV 589
              +    +FSQ+G   N QDI P+YAG L G+SN AG LA +  T  TGY +Q  GS+   
Sbjct:   428 IALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAF 487

Query:   590 FKVAVVLYIIGTLVWNLFATGERV 613
               V   LY   T+ W LFATGERV
Sbjct:   488 LTVTAFLYFATTVFWLLFATGERV 511

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 179/438 (40%), Positives = 262/438 (59%)

Query:   181 IPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN 240
             IP E +  +   ++  P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+
Sbjct:    75 IP-EVLSTETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWS 133

Query:   241 STTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPF 299
             S+  GL+QSSFFWGY L+Q+ GG W  K FGG+ VL  GV  WS AT L P+ A   +P 
Sbjct:   134 SSVAGLVQSSFFWGYALSQLPGG-WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPG 191

Query:   300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK 359
             L+  R  +GIGEGV+  A  +++++ IPV ERSR++ FV+ G+ LGSV GL ++P +I+ 
Sbjct:   192 LIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIET 251

Query:   360 FGWPSVFYSFGSLGSIWFA--LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPW 417
             F W SVFY FG LG  WF    +L +   S K + E+    K           ++  IPW
Sbjct:   252 FNWESVFYLFGLLGVGWFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSSLKEIPW 310

Query:   418 KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFA 477
             K       VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+    +LP L   V  
Sbjct:   311 KSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVT 370

Query:   478 NMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVL-CMACSQGS 535
             ++    AD L++ G+  T VRKI Q+I F+ PA  +T  S  +  P   ++  +      
Sbjct:   371 SLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLAL 430

Query:   536 DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWD-DVFKVA 593
              +F+ SGLY  HQDI P YA +LLG++NT G + G+ G A TG++L    SW   +F  +
Sbjct:   431 SSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPS 490

Query:   594 VVLYIIGTLVWNLFATGE 611
             +  Y+ GT+VW  FA+ E
Sbjct:   491 IFFYLTGTVVWLAFASSE 508

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 736 (264.1 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
 Identities = 149/384 (38%), Positives = 220/384 (57%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG++  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 LGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             I+     W  VFY FG++G  WF LW+     +P++   +   EK +IL  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILS-SLRNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP+L 
Sbjct:   278 KSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 530
               +   + G  AD L +K   S   VR+I   IG +GPA FL     +    ++AV  + 
Sbjct:   338 SWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLT 397

Query:   531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSWD 587
              S     F  SG   NH DI P YAG+LLG++NT   + G+ G      +      G W 
Sbjct:   398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTVGEWQ 457

Query:   588 DVFKVAVVLYIIGTLVWNLFATGE 611
              VF +A  + + G + + LFA GE
Sbjct:   458 TVFYIAAAINVFGAIFFTLFAKGE 481

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 728 (261.3 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 147/384 (38%), Positives = 220/384 (57%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K + W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG++  +V T+ TP+AA 
Sbjct:    99 KRYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
              G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 FGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             I+     W  VFY FG +G IWF LW+     +P+    +  +EK +IL  S+  +  S 
Sbjct:   219 IICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILS-SLKNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  +L   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+GL   LP+  
Sbjct:   278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 530
               +   + G  AD L +K   S   VR++   IG +GPA FL     +    ++AV+ + 
Sbjct:   338 CWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLT 397

Query:   531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS---WD 587
              S     F  SG   NH DI P YAG+LLG++NT   + G+ G      +    +   W 
Sbjct:   398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQ 457

Query:   588 DVFKVAVVLYIIGTLVWNLFATGE 611
              VF +A  + + G + ++LFA GE
Sbjct:   458 TVFYIAAAINVFGAIFFSLFAKGE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 721 (258.9 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
 Identities = 148/385 (38%), Positives = 219/385 (56%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K+++W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG+   SV T+LTP+AA 
Sbjct:    88 KKYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAAD 147

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+ +L+ +RA  G+GEGV  PAM++M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   148 LGVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 207

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             ++     W  VFY FG+LG +WF  W+      P+    +   E+ +IL  S  K+ +S 
Sbjct:   208 LICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYIL--SSLKDQLST 265

Query:   415 ---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 471
                +PW+ IL   P+WA++++HF +NW  + LLT +PTY  ++L+F+  E+G    LP+ 
Sbjct:   266 QKSVPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYF 325

Query:   472 TMAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCM 529
                +   + G IAD L  K   S   VRK    IG +GPA FL     +     +AV  +
Sbjct:   326 GCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFV 385

Query:   530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSW 586
               S     F  SG   NH DI P YAG+LLG++N+   + G+ G      +      G W
Sbjct:   386 TISTTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEW 445

Query:   587 DDVFKVAVVLYIIGTLVWNLFATGE 611
               VF +A  + + G + + LFA+GE
Sbjct:   446 QTVFYIAASINLFGAIFFALFASGE 470

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 712 (255.7 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 149/388 (38%), Positives = 219/388 (56%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LG G++  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L   Y+G  LG+V  L +S 
Sbjct:   159 LGVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS- 413
             I+     W  VFY FG +G +WF LW+     +P+    +   EK +I+  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVS-SLKNQLSSQ 277

Query:   414 -VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP--- 469
              V+PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP   
Sbjct:   278 KVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFG 337

Query:   470 -WLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAV 526
              WL M V     G  AD L V    S  +VR+I   IG +GPA FL     +    ++AV
Sbjct:   338 CWLCMIVC----GQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYSLAV 393

Query:   527 LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS- 585
               +  S     F+ SG   NH DI P YAG+LLG++NT   + G+ G      +    + 
Sbjct:   394 AFLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIAKSLTPDNTI 453

Query:   586 --WDDVFKVAVVLYIIGTLVWNLFATGE 611
               W  VF +A  + + G + + LFA GE
Sbjct:   454 KEWQTVFCIAAAINVFGAIFFTLFAKGE 481

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 710 (255.0 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
 Identities = 145/384 (37%), Positives = 218/384 (56%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LG G++  SV T+ TP+AA 
Sbjct:    99 KKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L   Y+G  LG+V  L +S 
Sbjct:   159 LGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS- 413
             I+     W  VFY FG +G +WF LW+     +P+    +   EK +I+  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVS-SLKNQLSSQ 277

Query:   414 -VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
              V+PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP+  
Sbjct:   278 KVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFG 337

Query:   473 MAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 530
               +   + G  AD L V    S  +VR+I   +G +GPA FL     +    ++AV  + 
Sbjct:   338 CWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLT 397

Query:   531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS---WD 587
              S     F+ SG   NH DI P YAG+LLG++NT   + G+ G      +    +   W 
Sbjct:   398 ISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPIIAKSLTPDNTIREWQ 457

Query:   588 DVFKVAVVLYIIGTLVWNLFATGE 611
              VF +A  + + G + + LFA GE
Sbjct:   458 TVFCIAAAINVFGAIFFTLFAKGE 481

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 713 (256.0 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 146/384 (38%), Positives = 216/384 (56%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LGFGV+  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
              G   L+ +RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 FGFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             ++     W  VFY FG +G IWF LW+     +P+    +   EK +IL  S+  +  S 
Sbjct:   219 VICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILS-SLKNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  +L   P+WA++++HF +NW  + LLT +PTY  +VL+FN+ E+G    +P+L 
Sbjct:   278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 530
               +   + G  AD L ++   S   VR++   IG +GPA FL     +    ++AV  + 
Sbjct:   338 CWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLT 397

Query:   531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSWD 587
              S     F  SG   NH DI P YAG+LLG++NT   + G+ G      +      G W 
Sbjct:   398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQ 457

Query:   588 DVFKVAVVLYIIGTLVWNLFATGE 611
              VF +A  + + G + + LFA GE
Sbjct:   458 TVFCIAAAINVFGAIFFTLFAKGE 481

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GX78	ANTR2_ARATH	No assigned EC number	0.8109	0.7837	0.8909	yes	no
Q652N5	PHT44_ORYSJ	No assigned EC number	0.7649	0.8097	0.8426	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	615
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	8e-75
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-52
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-51
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-51
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-23
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	3e-23
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	1e-17
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	8e-14
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-13
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-11
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-11
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	7e-11
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-10
COG0477	338	COG0477, ProP, Permeases of the major facilitator	7e-10
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-08
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-07
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	3e-07
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	4e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-06
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	4e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	1e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	2e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	3e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	6e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.001
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	0.001
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	0.003
TIGR00885	408	TIGR00885, fucP, L-fucose:H+ symporter permease	0.003
PRK10133	438	PRK10133, PRK10133, L-fucose transporter; Provisio	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  246 bits (629), Expect = 8e-75
 Identities = 129/406 (31%), Positives = 200/406 (49%), Gaps = 16/406 (3%)

Query: 218 LCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF 277
           L  +   N    I      F W+    GLI SS F+G ++ QI  G  A K+  K  +G 
Sbjct: 54  LACLSAENELDNIKN--PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGI 111

Query: 278 GVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF 337
           G+   SV +++ P AA  G+  ++  R   G+ +G   PA + ++ KW P  ERSR L  
Sbjct: 112 GMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171

Query: 338 VYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA 396
             SG  LG+   L +S  L + + GWP +FY FG +G  W  LW       P   P +  
Sbjct: 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISK 231

Query: 397 EEKRHILGGSISKEAVSV---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ 453
            EK++I   S+  +  S    +P K I    PVWA+  + F H W   IL T++PT+ + 
Sbjct: 232 FEKKYI-NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW 290

Query: 454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LSITAVRKIMQSIGFLGP--- 509
           VL+ +  E+GL   LP+L   + +   G++AD L S   LS+TA RKI   IG LGP   
Sbjct: 291 VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIF 350

Query: 510 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA 569
           A+ L  LS      + +L +A +  S     +G+  N  D+ PR+ G + G++   G + 
Sbjct: 351 AYALPYLSAAFYLTIIILTLANAVSS--GPLAGVLINSLDLAPRFLGFIKGITGLPGFIG 408

Query: 570 GVFGTAATGYILQRGSWDDVFKVAVVL---YIIGTLVWNLFATGER 612
           G+  +   G IL + S +    V +++    I+  + + +F + ER
Sbjct: 409 GLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAER 454

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  184 bits (470), Expect = 2e-52
 Identities = 107/398 (26%), Positives = 171/398 (42%), Gaps = 14/398 (3%)

Query: 215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPV 274
             ++  +DR N+S A   + ++   ++   G + S+F WGY++ Q  GG   D+FG +  
Sbjct: 2   VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61

Query: 275 LGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS 334
           L   ++ W V T L   A       L I+R  +G  E    P +  +++ W P SER+ +
Sbjct: 62  LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 335 LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 394
           ++   S   LG + G  +   ++  F W   F   G LG IW  LWL K    P +  + 
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPPQKAKW 178

Query: 395 RAEEKRHILGGSISKEAVSVIPW-------KLILSKAPVWALIISHFCHNWGTFILLTWM 447
             EE+++I+ G +  E     P        K +L    VW L +  F  N G    LTW 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 448 PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL 507
           PTY  Q    ++ E+G    LP +   +   +GG ++D L+ +G S+    +    I  L
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV-FARKTAIIAGL 297

Query: 508 GPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY-AGVLLGLSNTAG 566
                L   ++      A L +         + +  ++   D  P   AG+  GL N+ G
Sbjct: 298 V-LSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLG 356

Query: 567 VLAGVFGTAATGYIL-QRGSWDDVFKVAVVLYIIGTLV 603
            L G+ G    G I    GS+     V   L +IG L 
Sbjct: 357 NLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  181 bits (460), Expect = 1e-51
 Identities = 89/365 (24%), Positives = 154/365 (42%), Gaps = 20/365 (5%)

Query: 211 LCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG 270
           L  +AFL      +      L ++++   + T +GL+ ++F  GY L Q + G  +D+FG
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 271 GKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE 330
            + VL  G++ +++  +L   A+   L  LL++R   G+G G   PA   +++ W P  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 331 RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE 390
           R R+L  + +G  LG+  G  +  +L   FGW + F     L  +   L        P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 391 DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY 450
               +  E+              ++P   +L + PV  L+++     +  F LLT++P  
Sbjct: 179 SKRPKPAEEAP----------APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL- 227

Query: 451 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA 510
           Y +VL  +   +GL   L  L  A+   + G ++D L  +       R ++  +  +  A
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLALLLLILAA 281

Query: 511 FFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQD-IGPRYAGVLLGLSNTAGVLA 569
             L  LS   +    ++ +             L +   D       G   GL NTAG L 
Sbjct: 282 LGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG 341

Query: 570 GVFGT 574
           G  G 
Sbjct: 342 GALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  179 bits (457), Expect = 4e-51
 Identities = 101/401 (25%), Positives = 175/401 (43%), Gaps = 50/401 (12%)

Query: 209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK 268
           +LL F  F L  +DR  +S A+  ++++   +++  GLI S+F  GY L  ++ G  +D+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 269 FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV 328
           FG + VL  G++ +++ ++L   A+   L  LL+ R  +G+G G   PA   ++++W P 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 329 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP 388
            ER R+L    +G  LG++ G  +  +L +  GW  +F     LG +   L L       
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL------- 171

Query: 389 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP 448
                                                +  L ++ F  ++G + LLT++P
Sbjct: 172 --------------------------------FLLRLLLLLALAFFLLSFGYYGLLTYLP 199

Query: 449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG 508
            Y  +VL  +  E+GL   L  L   + A +GG ++D L          R+++  IG L 
Sbjct: 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGLLL 251

Query: 509 PAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGV 567
            A  L  L+   + A+ ++ +        F+   L +   +   P   G   GL NT G 
Sbjct: 252 AALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS 311

Query: 568 LAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 608
           L G  G    G +L  G +  VF +   L ++  L+  L  
Sbjct: 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  102 bits (256), Expect = 2e-23
 Identities = 92/402 (22%), Positives = 164/402 (40%), Gaps = 39/402 (9%)

Query: 203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVG 262
             +W  ++L F   L+   D   M  A   +S E+  +   +G + S+   G     +  
Sbjct: 13  RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 322
           G  AD+ G + VL + ++ +SV T+L  +A    +  LLI+R   G+G G  MP +N ++
Sbjct: 73  GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130

Query: 323 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK 382
           S++ P   R  ++  ++ G  +G+  G  ++  LI  FGW S+FY  G +  +   L L 
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189

Query: 383 KAYSSP-----------------KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
           +                         P+++AE +   L    + +      +K +     
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKT 248

Query: 426 VWA---LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 482
                 L + +F    G + L  W+P    + L F+L+ +     L      + + + GW
Sbjct: 249 ARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGW 307

Query: 483 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG 542
           +AD L           ++   +  LG  F +   S + +P + +L  A +       QSG
Sbjct: 308 LADRL---------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG 358

Query: 543 LYSNHQDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYIL 581
           LY+      P   R  GV   +    G L  + G    GY+L
Sbjct: 359 LYALMALFYPTAIRATGVGWAIG--IGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score =  102 bits (255), Expect = 3e-23
 Identities = 76/392 (19%), Positives = 150/392 (38%), Gaps = 27/392 (6%)

Query: 213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK 272
           F  +    + R N ++A+  + +E   + T +GL+ SSF   Y +++ V G  +D+   +
Sbjct: 1   FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60

Query: 273 PVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERS 332
             L  G+I  ++  +         L  +  + A  GI +G+  P     ++KW   SER 
Sbjct: 61  VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118

Query: 333 RSLAFVYSGMYLGSVTGLAVSPILI----QKFGWPSVFYSFGSLGSIWFALWLKKAYSSP 388
             ++F      +G   G  + P+++    + + W  VF   G +  I   +       SP
Sbjct: 119 TWVSFWNCSHNVG---GGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175

Query: 389 K-----EDPELRAEEKRH---ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT 440
           +        E+  EE           ++K+ + +    ++L+K  +W + + +       
Sbjct: 176 QSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFL--QYVLLNKV-LWYISLGYVFVYVVR 232

Query: 441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV-SKGLSITAVRK 499
             +L W P Y  Q   F+  ++     L  L   V   + GW++D L   +   +     
Sbjct: 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM 292

Query: 500 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP-RYAGVL 558
            +  +  L   ++L   +    P M ++C+          Q  +     ++ P + AG  
Sbjct: 293 ALIIVSLLV--YWLNPAA---NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTA 347

Query: 559 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVF 590
            G       L G+      GY+     W   F
Sbjct: 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 87/442 (19%), Positives = 156/442 (35%), Gaps = 54/442 (12%)

Query: 204 KRW-----VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLT 258
           KRW     + + + ++AF L    R N ++A+  + ++   + T +G++ S+F   Y ++
Sbjct: 24  KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80

Query: 259 QIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL-PFLLIMRAFM---GIGEGVA 314
           + V G+ +D+   +  + FG+I  ++  +L       G  P L +        G  +G+ 
Sbjct: 81  KFVMGVLSDRSNPRYFMAFGLILSAIVNIL------FGFSPSLFLFAVLWVLNGWFQGMG 134

Query: 315 MPAMNNMLSKWIPVSERSRSLAFV-----YSGMYLGSVTGLAVSPILIQKFGWPSVFYSF 369
            P     ++ W    ER    +         G     V  LA         GW + FY F
Sbjct: 135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFY-F 190

Query: 370 GSLGSIWFALWLKKAYS-SPKE----DPELRAEEKRHILGGSISKEAVSV--IPWKLILS 422
             + +I  AL L       P+       E    +   I       E ++   I  K +L 
Sbjct: 191 PGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLK 250

Query: 423 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM--G 480
              +W L +++       + +  W P Y ++V  F+L ++     +    +A        
Sbjct: 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW--AISLFEVAGLPGTLLA 308

Query: 481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT--PAMAVLCMACSQGSDAF 538
           GW++D  + KG      R  M  I  L     L            +  + +    G   +
Sbjct: 309 GWLSD-KLFKGR-----RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII-GFLIY 361

Query: 539 SQ---SGLYSNHQDIGPRYA-GVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKVA 593
                 GL +   +  P+ A G   G       L G        GYI     WD  F V 
Sbjct: 362 GPQMLIGLAAA--EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVL 419

Query: 594 VVLYIIGTLVWNLFATGERVLE 615
            +  ++  L+       E    
Sbjct: 420 SIAALLAILLLLPVWNAEERKI 441

Length = 448

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 87/423 (20%), Positives = 158/423 (37%), Gaps = 37/423 (8%)

Query: 199 WEQFPKR--WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYL 256
           WE   KR     + L   AF +  M     S   + +  +F  +    GL+ +       
Sbjct: 4   WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGA 63

Query: 257 LTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEG--- 312
           L ++  G   D+FGG+      ++   +  +    A        LL++   +G+      
Sbjct: 64  LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA 123

Query: 313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL 372
           V MP      S + P  ++  +L    +G    +V  L V+P++   FG+ +     G  
Sbjct: 124 VGMP----NASFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIY 178

Query: 373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIIS 432
             +  A+    A+    + PE RA           S +       K + S    W L + 
Sbjct: 179 V-VALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLL 226

Query: 433 HFCHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG 491
           +F   +G F+  + ++P Y       +   +GL   L  L  A+   +GGW++D +   G
Sbjct: 227 YFA-TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GG 283

Query: 492 LSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM----ACSQGSDAFSQSGLYSNH 547
             +T    +  ++     + FLT   H  +  + V         +   +      ++   
Sbjct: 284 RRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG----SVFKMI 339

Query: 548 QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYII-GTLVWN 605
             I P+  G + G+    G L G F   A G  L   GS+   F + +  Y++   L W 
Sbjct: 340 PVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399

Query: 606 LFA 608
           L+A
Sbjct: 400 LYA 402

Length = 417

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 304
           GL+ + +  G L+   + G+  D+FG KPVL  G+  + ++T +  +++ I +  L+I R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58

Query: 305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS 364
              G G   A+ A   +++   P  ER  +L  + +G+ LG + G  +  +L Q  GW +
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 365 VFYSFGSLGSIWFAL 379
            F     L    F L
Sbjct: 119 PFLFLAILALAAFIL 133

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 79/424 (18%), Positives = 159/424 (37%), Gaps = 38/424 (8%)

Query: 193 QETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSF 251
             T     +      ++ L  +AF +       + + +LP ++ +   +    G + +++
Sbjct: 1   MATPATARKPMW-LALLALALAAFAI-GTTEF-VPVGLLPPIAADLGVSEGAAGQLITAY 57

Query: 252 FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE 311
             G  L   +  +   +   + +L   +  + V+ +L+ +A       LL+ RA  G+  
Sbjct: 58  ALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP--SFAVLLLARALAGLAH 115

Query: 312 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS 371
           GV       + ++ +P  +R R+LA V++G+ L +V G+ +   L Q FGW + F +   
Sbjct: 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175

Query: 372 LGSI---WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWA 428
           L  +        L  +  S      LR                      +L+     +  
Sbjct: 176 LALLALLLLWKLLPPSEISGSLPGPLRTL-------------------LRLLRRPGVLLG 216

Query: 429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 488
           L+ + F    G F L T++  +   V  F+++   L  +   +   +   +GG +AD   
Sbjct: 217 LLAT-FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGP 275

Query: 489 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ 548
                  A+   +  +     A   T  S    PA+A+  +     + + +  GL +   
Sbjct: 276 -----RRALIAALLLLALALLALTFTGAS----PALALALLFLWGFAFSPALQGLQTRLA 326

Query: 549 DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 608
            + P  A +   L+  A  L    G A  G +L    +     V   L ++  L+  L A
Sbjct: 327 RLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386

Query: 609 TGER 612
             +R
Sbjct: 387 RKDR 390

Length = 394

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 30/251 (11%)

Query: 207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWA 266
           + + LCF   LL  +D  +  +A   M++EF  +   +G   S+   G L   ++GG  A
Sbjct: 15  LTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA 74

Query: 267 DKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI 326
           D+ G K +L   V  + + ++ T  A     P LL+ R   G+G G A+P +  + S+ +
Sbjct: 75  DRIGRKRILIVSVALFGLFSLATAQAWD--FPSLLVARLLTGVGLGGALPNLIALTSEAV 132

Query: 327 PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI----WFALWLK 382
               R  +++ +Y G+  G      +  +      W  +FY  G +G +        WL 
Sbjct: 133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY-VGGVGPLLLVPLLMRWLP 191

Query: 383 KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI-----LSKAPVWALIISHFCHN 437
                          E R     + + +  + +   L       +   +W   IS+F   
Sbjct: 192 ---------------ESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLW---ISYFFTL 233

Query: 438 WGTFILLTWMP 448
              + LL W+P
Sbjct: 234 IVLYFLLNWLP 244

Length = 406

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 77/378 (20%), Positives = 125/378 (33%), Gaps = 42/378 (11%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV 291
           P+ + F    T V +  +    G  ++  VGG+ ADKFG + V   G I + +      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA 351
           A    L  L +       G G+A     N   KW P  +R  +   +  G  LGS     
Sbjct: 88  AD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGS---FI 141

Query: 352 VSPI---LIQKFGWPSVFYSFG-------SLGSIWFALWLKKAYSSPKEDPELRAEEKRH 401
           +SP+   +I   G P+ F   G        LG+                        +  
Sbjct: 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG----------------YPPGQLI 185

Query: 402 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 461
                +S +  +V     +L     W L +S F +     +L+     Y        L  
Sbjct: 186 KTNIEVSVKDYTVWE---MLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-----LGL 237

Query: 462 SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT 521
           S  F VL  ++++   N GG      +S  +       I+  I  +G A  L        
Sbjct: 238 SDGFLVLA-VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV 296

Query: 522 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 581
             +A + +         S           GP  +    G   TA  +AG+FG     + L
Sbjct: 297 LFLATVALVFFTWGGTISLF-PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355

Query: 582 QRGSWDDVFKVAVVLYII 599
               ++  F V     + 
Sbjct: 356 TEIGFEYTFIVTGAFALT 373

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 35/331 (10%)

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGVAMPAMNNM 321
           G+ ADKFG KP++ + ++ +SV T L+ +A+  G+  L + R  +G+G  G    A    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131

Query: 322 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL 381
           +  W P   +S++ AF+ SG  +G++      P   + +GW + F  F  L  +   +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188

Query: 382 KKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP------VWALIISHFC 435
           +      KE  E +   K      S S  +V  +  K + ++A       V+ ++ S F 
Sbjct: 189 RARAPESKEWEEAKLSGKGK---HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245

Query: 436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLS 493
            NW  F LL   PTY    L     ++G+   L  +T A F  + G I   L +   GL 
Sbjct: 246 ANWPIFGLL---PTY----LAGEGFDTGVVSNL--MTAAAFGTVLGNIVWGLCADRIGLK 296

Query: 494 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR 553
            T    ++ S  F+ P F + Q +++   A     MA + G        LY    D  P 
Sbjct: 297 KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLY----DYFPL 352

Query: 554 Y-----AGVLLGLSNTAGVLAGVFGTAATGY 579
                  G++  L+ T+G    +  T     
Sbjct: 353 EVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383

Length = 426

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 60.5 bits (145), Expect = 7e-10
 Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 18/337 (5%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT--VGLIQSSFFWGYLLTQIVGG 263
              +L    A LL  +D   +S A+  +    + +S     GL+ S+FF GY +  ++ G
Sbjct: 1   KRSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAG 60

Query: 264 IWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 323
              D++G + VL  G++ + + T+L  +A  +GL  LLI+R   G+G G  +P  + +LS
Sbjct: 61  PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120

Query: 324 KWIPVSERSRSLAFVYS--GMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFAL 379
           +W P +        + +     LG   G  ++ +L+     GW + F     LG +   L
Sbjct: 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLIL 180

Query: 380 WLK------------KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVW 427
            L                 +  E  +L       +LGG +       +       +A + 
Sbjct: 181 VLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLL 240

Query: 428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL 487
            L ++      G  ILL  +P         +        +L  + + +   +G  +  +L
Sbjct: 241 GLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSL 300

Query: 488 VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM 524
           +   L  +   + +   G L  A  L  L       +
Sbjct: 301 LVDRLGRSLGLRAILLAGALLLAILLLVLLLALVLTI 337

Length = 338

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD 267
           +++  F  F+   +DR+N+  A L M K+   ++T  GL  + F+  Y++  I   I   
Sbjct: 9   LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68

Query: 268 KFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP 327
             G +  +   ++ W +A+  T  A   G   L ++R  +GI E   +P +   L+ W P
Sbjct: 69  IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 328 VSERSRSLAFVYSGMYLGSVTGLAVS 353
              R+R+ A     M +    GL +S
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILS 152

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 197 PWWEQF-PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS-TTVGLIQSSFFWG 254
           PW+      +W      +  +LL   D V +++ +  +  EF   +     LI ++F   
Sbjct: 9   PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISR 68

Query: 255 YLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGV 313
           +    ++G +  D++G +  +   ++ +SV T+    A   G   L I R  +G+G  G 
Sbjct: 69  WFGGLLLGAM-GDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAGE 125

Query: 314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG 373
              +   ++  W P   R+++  F+ SG  +G+V    V  +++  +GW ++F  F  + 
Sbjct: 126 YGSSATYVIESW-PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF--FIGIL 182

Query: 374 SIWFALWLKKA 384
            I FALWL+K 
Sbjct: 183 PIIFALWLRKN 193

Length = 496

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 66/316 (20%), Positives = 122/316 (38%), Gaps = 45/316 (14%)

Query: 241 STTVGLIQS--SFFWGYLLTQIVGGI----WADKFGGKPVLGFGVIWWSVATV---LTPV 291
              V L+ +  +F  G+L  + +G I    + D+ G K  L   ++   + T+   L P 
Sbjct: 29  DPLVALLATFATFAAGFLA-RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS 87

Query: 292 AARIGL--PFLL-IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS----GMYL 344
            A IG+  P LL + R   G   G         L+++ P  +R    +F       G+ L
Sbjct: 88  YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLL 147

Query: 345 GSVTGLAVSPIL----IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 400
            ++T L +S +L    + ++GW   F     L  I   L+L++   + +E P     +++
Sbjct: 148 AALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI--GLYLRR---NLEETPVFEKAQEK 202

Query: 401 HILGGSISKEAVSVIPWKLILSK--APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN 458
           H              P    L+K   P    +          +++ T++PTY  Q L  +
Sbjct: 203 HKKKR---------GPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS 253

Query: 459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH 518
              + L  +L  +   +   + G ++D +  + + I     I   +  L     L  L  
Sbjct: 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI-----IFTVLAALLAVPLLMALLD 308

Query: 519 VRTPAMA---VLCMAC 531
             +  +    VL MA 
Sbjct: 309 SGSFTLFFFLVLGMAL 324

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 29/214 (13%)

Query: 204 KRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVG 262
           K + ++L C S      +D   M +   P ++ + +  ++ V +  + +  G+   Q++ 
Sbjct: 4   KAFALLLGCLSILGPLGID---MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLW 60

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 322
           G  +D++G +PVL  G+  ++++++   ++  I    LL++R     G          ++
Sbjct: 61  GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIET--LLVLRFVQAFGASAGSVISQALV 118

Query: 323 SKWIPVSERSRSLAFVYSGMYLGSVTGL--AVSPI----LIQKFGWPSVFYSFGSLGSIW 376
               P  E SR  +       L  V  L  AV+P+    ++    W ++F      G + 
Sbjct: 119 RDIYPGEELSRIYSI------LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172

Query: 377 FAL--WLKKAYSSPKEDPELRAEEKRHILGGSIS 408
            AL  ++          PE    E R  +     
Sbjct: 173 SALIFFIL---------PETLPYEARIQISTYFE 197

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 8/179 (4%)

Query: 429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 488
           L ++ F    G  +L   +P Y  + L  + TE GL      L  A+   + G ++D   
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 489 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ 548
            + + +  +  ++ ++G L   F  +         + VL +    G  A   +       
Sbjct: 61  RRRVLLIGL--LLFALGLLLLLFASS------LWLLLVLRVLQGLGGGALFPAAAALIAD 112

Query: 549 DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 607
              P   G  LGL +    L    G    G +     W   F +  +L ++  ++  L 
Sbjct: 113 WFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171

Length = 346

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 240 NSTTVGLIQSSF-FWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGL 297
           + T    + S++    YL   I+GG  AD+  G +  +  G I  ++  ++  +++  G 
Sbjct: 59  DETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP 117

Query: 298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV--YSGMYLGSVTGLAVSPI 355
             L I  A + +G G+  P ++++L +  P  +  R   F   Y G+ +GS+    ++ +
Sbjct: 118 GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177

Query: 356 LIQKFGWPSVF--YSFGSLGSIWFALWLKKAY---SSPKEDPELRAEEKRHILGGSISKE 410
           L   +GW   F   + G +  +   L  ++         +   L       +LGG +   
Sbjct: 178 LAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI 237

Query: 411 AVSVIPWKLILSKAPVWALIIS 432
             +++   L  +      L+IS
Sbjct: 238 LAALLTLLLNQNTFSGVLLVIS 259

Length = 498

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 32/70 (45%)

Query: 245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 304
           GLI S F  G L+  +  G   D+FG K  L  G + + +  +L   A       L++ R
Sbjct: 49  GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108

Query: 305 AFMGIGEGVA 314
             +G+G G  
Sbjct: 109 VIVGLGVGGI 118

Length = 449

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV 291
           P+     W    + +  + F         + G + DK+G + V+ FG I   +  VL   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 292 AARIGLPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL 350
           A    LP L       GIG G V    + N L KW P     R LA   +    G+   L
Sbjct: 88  AD--SLPALYAAAVVAGIGAGAVYGTCVGNAL-KWFP---DKRGLAAGLTAAGFGAGAAL 141

Query: 351 AVSPI--LIQKFGWPSVFYSFG 370
            V PI  +I+  G+ + F  FG
Sbjct: 142 TVVPIAAMIKVSGYQAAFMYFG 163

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 72/383 (18%), Positives = 131/383 (34%), Gaps = 41/383 (10%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIW 265
           W    L FS +   +   V M    L +S     N   V ++  +        +I+ G  
Sbjct: 7   WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVL------RIILGFL 60

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF--LLIMRAFMGIGEGVAMPAMNNMLS 323
            DKFG +      ++  ++  +   +A      +  LL++R F+GI  G     M   +S
Sbjct: 61  VDKFGPRYTTTLSLLLLAIPCLWAGLA---VQSYSVLLLLRLFIGIAGGSFASCM-PWIS 116

Query: 324 KWIPVSERSRSLAFVYSGMYLG-SVTGLAVSPI-----------LIQKFGWPSVFYSFGS 371
            + P   +  +L        +G  V    + PI               +GW  V    G 
Sbjct: 117 FFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176

Query: 372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALII 431
           L      ++   A + P +    +        G   S    ++     +      W L +
Sbjct: 177 LLLPALLIFFVGADTPPGKPATGKLS----FKGARWSVGTGALGDQLKVFRDRHTWILAL 232

Query: 432 SHFCHNWGTFILLTWM-PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK 490
            +    +G+F+ ++ +   ++      +   +G +  L  L  ++   +GG I+D L   
Sbjct: 233 LYSV-TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL--G 289

Query: 491 GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ-- 548
           G     +  +  ++G       L   S +      VL +A       FS +G  S     
Sbjct: 290 GARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALF----FFSGAGNGSTFALV 343

Query: 549 -DIGPRYAGVLLGLSNTAGVLAG 570
             I  R  G + GL    G L G
Sbjct: 344 PHIFRRATGAVSGLVGAIGNLGG 366

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT 286
           ++AI  ++ +   + + V  + +S+     ++  + G  A +FG + +       +++ +
Sbjct: 22  NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81

Query: 287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS 346
           +L  VA  + L  ++I R   G G G  +P   + L    P  +R R++A     + +  
Sbjct: 82  LLCGVAPNLEL--MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP 139

Query: 347 VTGLAVSPILIQKFGWPSVFY 367
             G  +   +I+ + W  +F 
Sbjct: 140 ALGPTLGGWIIENYHWRWIFL 160

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL 288
           A+  ++ +F  ++ +V +  S++  G+ + Q+  G  AD FG KPV+  G + +++A V 
Sbjct: 13  ALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 289 TPVAARIGLPFLLIMRAFMGI---GEGVAMPA-MNNMLSKWIPVSERSRSLAFVYSGMYL 344
             +A  I    L+ MR   G+      V + A M +M  K     E SR ++FV      
Sbjct: 73  CALAQTIDQ--LIYMRFLHGLAAAAASVVINALMRDMFPK----EEFSRMMSFVT----- 121

Query: 345 GSVTGLA--VSPI----LIQKFGWPSVFYS 368
             V  +A  ++PI    L+  F W ++F+ 
Sbjct: 122 -LVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150

Length = 377

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGI 264
           +W      +  +LL   D   +++ +  ++ EF   +     + S+         ++ G+
Sbjct: 10  QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGL 69

Query: 265 WADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 324
           W D++G +  +   ++ +S  T+    A   G   + I R  +GIG G    +    + +
Sbjct: 70  WGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIE 127

Query: 325 WIPVSERSRSLAFVYSGMYLG----SVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
             P   R+++   + SG  +G    +     V P+     GW ++F  F S+  I FALW
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW--GDGWRALF--FISILPIIFALW 183

Query: 381 LKK 383
           L+K
Sbjct: 184 LRK 186

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 70/349 (20%), Positives = 131/349 (37%), Gaps = 46/349 (13%)

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 325
           A +FG +  L   ++  +   ++  +    GLP L +     G G  V    + +++ + 
Sbjct: 71  ARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRD 127

Query: 326 IPVSERSRSLAFVYSGMYLGSVTGLAVS---PILIQKFGWPSVFYSFGSLGSIWFALWLK 382
            P  +R   +  +YS   LG+   LA +   P+     GW      +  L  +   +WL 
Sbjct: 128 FP--KRVGLMTGLYS-TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL- 183

Query: 383 KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI 442
                    P+   E+   I    +S   V    W+  L     W + +     +   +I
Sbjct: 184 ---------PQALREQAASIATKLVSVRKV----WRSPL----AWQVTLFMGLQSLLYYI 226

Query: 443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA--VFANMGGWIADTLVS-KGLSITAVRK 499
           ++ W+P         +  E+G   +L  + +A    A +   +A    + + L + A+  
Sbjct: 227 VIGWLPAILID-RGLSAAEAGS--LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL-- 281

Query: 500 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 559
           ++  +G +G      QL     P +  L +   QG  AF  +      +      A  L 
Sbjct: 282 LLMLVGLVGLLLAPGQL-----PILWALLLGLGQGG-AFPLALTLILLRSSDAAIAAALS 335

Query: 560 GLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLF 607
           G++   G L   FG    G++    GSW       +VL  + TL+  +F
Sbjct: 336 GMAQGVGYLLAAFGPWLFGFLHDATGSW----SAPLVLLALATLLMLIF 380

Length = 395

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 86/427 (20%), Positives = 159/427 (37%), Gaps = 43/427 (10%)

Query: 205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGI 264
           RW V L  F  +    + R N ++A+ P   E  ++   +G   S+    Y  ++ + G 
Sbjct: 25  RWQVFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSKGELGFALSAISIAYGFSKFIMGS 83

Query: 265 WADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPFLLIMRAFMGIGEGVAMPAMNNML 322
            +D+   +  L  G+I  +   +L      A   +  + ++    G  +G+  P     +
Sbjct: 84  VSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTM 143

Query: 323 SKWIPVSERSR-----SLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWF 377
             W   SER       + A    G     +  L ++        W +  Y F ++ +I  
Sbjct: 144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF----NDWHAALY-FPAICAIIV 198

Query: 378 ALWLKKAYSSPKEDP---------ELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWA 428
           AL+   A++  ++ P         E R +        +  +     I  + +L    +W 
Sbjct: 199 ALF---AFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWY 255

Query: 429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 488
           + I++       + +L W PTY  +V  F L +S     L          + GW++D + 
Sbjct: 256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 315

Query: 489 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ 548
                 T V     ++  +  A  +  ++    P + ++CM    G   +    L   H 
Sbjct: 316 KGNRGATGV--FFMTLVTI--AVIVYWMNPAGNPLVDMICMI-VIGFLIYGPVMLIGLHA 370

Query: 549 -DIGPR-YAGVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKV-------AVVLYI 598
            ++ P+  AG   G +   G L G V  +A  GY +    WD  F V       AV+L I
Sbjct: 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430

Query: 599 IGTLVWN 605
           +   V  
Sbjct: 431 V---VMI 434

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK 268
            L+  S F L        +  +    + F   +    L+QS+F+ GY +  I   I+  K
Sbjct: 6   ALIT-SLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK 64

Query: 269 FGGKPVLGFGVIWWSVATVLTPVAARIGL--PFLL---IMRAFMGIGEGVAMPAMNNMLS 323
              K  +  G+  +++   L   AA I     FL+   I+ A +G  E  A P +  M  
Sbjct: 65  LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG- 123

Query: 324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
              P S  +R L    S    GS+ G+ V+  LI 
Sbjct: 124 ---PESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 408

>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF 269
           LLC   FL    + +N  I +    + F   +   GLIQS+F++GY +  I  GI   K 
Sbjct: 30  LLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88

Query: 270 GGKPVLGFGVIWWSVATVLTPVAARIG-----LPFLLIMRAFMGIGEGVAMP 316
             K  +  G+  +++   L   AA I      L  L I+ A +G  E  A P
Sbjct: 89  SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP 140

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	615
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	99.98
PRK12382	392	putative transporter; Provisional	99.98
TIGR00900	365	2A0121 H+ Antiporter protein.	99.98
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.98
PRK10489	417	enterobactin exporter EntS; Provisional	99.98
PRK15075	434	citrate-proton symporter; Provisional	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.98
PRK09952	438	shikimate transporter; Provisional	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK10054	395	putative transporter; Provisional	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
PRK09528	420	lacY galactoside permease; Reviewed	99.96
TIGR00898	505	2A0119 cation transport protein.	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
KOG2615	451	consensus Permease of the major facilitator superf	99.91
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.91
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.9
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.87
PTZ00207	591	hypothetical protein; Provisional	99.87
PRK09669	444	putative symporter YagG; Provisional	99.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.85
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.85
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.84
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.84
KOG2563	480	consensus Permease of the major facilitator superf	99.84
PRK10429	473	melibiose:sodium symporter; Provisional	99.82
PRK09848	448	glucuronide transporter; Provisional	99.82
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.79
PRK11462	460	putative transporter; Provisional	99.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.75
COG2211	467	MelB Na+/melibiose symporter and related transport	99.75
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.64
KOG3626	735	consensus Organic anion transporter [Secondary met	99.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.59
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.46
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.46
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
PRK09528	420	lacY galactoside permease; Reviewed	99.41
PRK15011	393	sugar efflux transporter B; Provisional	99.41
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK12382	392	putative transporter; Provisional	99.4
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.36
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.36
PRK10054	395	putative transporter; Provisional	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.35
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.34
PRK03893	496	putative sialic acid transporter; Provisional	99.33
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
PRK03699	394	putative transporter; Provisional	99.31
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.3
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.3
PRK11663	434	regulatory protein UhpC; Provisional	99.29
PRK09705	393	cynX putative cyanate transporter; Provisional	99.28
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.25
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.25
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.25
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.23
PRK11010	491	ampG muropeptide transporter; Validated	99.23
TIGR00891	405	2A0112 putative sialic acid transporter.	99.23
PRK12307	426	putative sialic acid transporter; Provisional	99.23
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.23
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.21
PRK10504	471	putative transporter; Provisional	99.21
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.2
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.19
TIGR00900	365	2A0121 H+ Antiporter protein.	99.19
PRK09952	438	shikimate transporter; Provisional	99.19
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.17
TIGR00895	398	2A0115 benzoate transport.	99.17
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
PRK15075	434	citrate-proton symporter; Provisional	99.16
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.16
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
PRK10091	382	MFS transport protein AraJ; Provisional	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PRK11043	401	putative transporter; Provisional	99.13
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.13
KOG3762	618	consensus Predicted transporter [General function	99.12
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.11
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.11
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.1
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.06
PLN00028	476	nitrate transmembrane transporter; Provisional	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.05
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.04
KOG0637	498	consensus Sucrose transporter and related proteins	99.03
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.03
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.03
KOG0569	485	consensus Permease of the major facilitator superf	99.02
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.01
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.01
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.98
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.97
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.95
TIGR00898	505	2A0119 cation transport protein.	98.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.93
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.92
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.92
PRK10133	438	L-fucose transporter; Provisional	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.89
PRK09848	448	glucuronide transporter; Provisional	98.89
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.88
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.86
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.83
KOG3762	618	consensus Predicted transporter [General function	98.8
PRK10429	473	melibiose:sodium symporter; Provisional	98.78
PRK09669	444	putative symporter YagG; Provisional	98.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.76
PF13347	428	MFS_2: MFS/sugar transport protein	98.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.75
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.73
TIGR00901	356	2A0125 AmpG-related permease.	98.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.71
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
COG0477	338	ProP Permeases of the major facilitator superfamil	98.69
PTZ00207	591	hypothetical protein; Provisional	98.68
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.63
KOG2532	466	consensus Permease of the major facilitator superf	98.62
TIGR00805	633	oat sodium-independent organic anion transporter.	98.61
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.6
KOG2615	451	consensus Permease of the major facilitator superf	98.59
KOG3810	433	consensus Micronutrient transporters (folate trans	98.59
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.53
COG2211	467	MelB Na+/melibiose symporter and related transport	98.51
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.48
PRK11462	460	putative transporter; Provisional	98.47
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.45
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.41
COG3202	509	ATP/ADP translocase [Energy production and convers	98.26
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.23
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.23
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.2
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.19
KOG2533	495	consensus Permease of the major facilitator superf	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.08
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.08
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.06
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.03
KOG0254	513	consensus Predicted transporter (major facilitator	98.02
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.01
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.95
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.76
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.75
PF12832	77	MFS_1_like: MFS_1 like family	97.69
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.43
PRK03612	521	spermidine synthase; Provisional	97.43
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.42
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.26
PRK03612	521	spermidine synthase; Provisional	97.22
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.2
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.14
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.97
KOG2563	480	consensus Permease of the major facilitator superf	96.95
KOG3880	409	consensus Predicted small molecule transporter inv	96.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.76
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.64
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.5
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.29
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.19
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.17
KOG3097	390	consensus Predicted membrane protein [Function unk	96.05
COG0477	338	ProP Permeases of the major facilitator superfamil	95.94
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.01
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.52
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.2
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.89
KOG3626	735	consensus Organic anion transporter [Secondary met	93.61
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.07
KOG0637	498	consensus Sucrose transporter and related proteins	92.76
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.56
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.03
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.78
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.63
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	86.24
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	84.6
KOG3810	433	consensus Micronutrient transporters (folate trans	83.9
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	82.66

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.1e-37  Score=309.39  Aligned_cols=401  Identities=18%  Similarity=0.230  Sum_probs=325.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      .|+.+++..++.+...++.+.+++.+.|.+.++.++|.+|+|++.+.+.+.|.++..+.|.++||.+.|..+.+++++.+
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhH--hhhhcCCC
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS--PILIQKFG  361 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~--~~l~~~~g  361 (615)
                      +..+++++++  +.+.+.++.++.|+..|..+|++...+++|++++|||+..++++.+-++|+.+.|++.  +++..+.+
T Consensus       106 i~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~  183 (448)
T COG2271         106 IVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG  183 (448)
T ss_pred             HHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence            9999999999  7888999999999999999999999999999999999999999999999999999999  89998899


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhc----CCccc--cccccccHHHHhhhhhHHHHHHHHHH
Q 007159          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILG----GSISK--EAVSVIPWKLILSKAPVWALIISHFC  435 (615)
Q Consensus       362 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~~~~~~l~~~~  435 (615)
                      ||..|++-+++++++.++.++..+++|++..-...++.+.+..    ..++.  -..+..-++.+++||.+|.+++..++
T Consensus       184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vf  263 (448)
T COG2271         184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVF  263 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            9999999999999999988888888877643222222111110    01111  11223456778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 007159          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ  515 (615)
Q Consensus       436 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  515 (615)
                      .+..=+++..|.|.|+.|..|++...++...+++=.+++.|.++.||++||+-+.|....+   ++..++.. ..+....
T Consensus       264 vYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~---~i~~~~i~-~~~~~~w  339 (448)
T COG2271         264 VYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA---LIFMLLIT-ASLVLYW  339 (448)
T ss_pred             HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH---HHHHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998633322211   11111111 1122222


Q ss_pred             hccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHhhheeccCChhHHHHHH
Q 007159          516 LSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWDDVFKVA  593 (615)
Q Consensus       516 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~l-g~~igp~l~G~l~~~~g~~~~f~~~  593 (615)
                      .....++. ..++++.+++...+.....-....+..|++..|++.|+...+.++ |...+....|++.|..||...|.+.
T Consensus       340 ~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~  419 (448)
T COG2271         340 LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVL  419 (448)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHH
Confidence            22222233 333444444444444444444556667779999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 007159          594 VVLYIIGTLVWNLFATG  610 (615)
Q Consensus       594 ~~~~l~~~l~~~~~~~~  610 (615)
                      .+.++++.++++...+.
T Consensus       420 ~~~a~l~~lll~~~~~~  436 (448)
T COG2271         420 SIAALLAILLLLPVWNA  436 (448)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88888887776665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=302.88  Aligned_cols=379  Identities=20%  Similarity=0.257  Sum_probs=312.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      |..++.+.++.|..+.........+|++.+++|+|..+.|++.++|.+++.++.|+...+.||+.||++++..+.++.++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            56677777777888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      .+++++++  |++.+++.|++.|+..|.+++...++..++.|+++|++++++...+..++.++|.+++.++.+.+|||+.
T Consensus        92 n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~  169 (394)
T COG2814          92 NLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT  169 (394)
T ss_pred             HHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence            99999999  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc-CCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          366 FYSFGSLGSIWFALWLKKAY-SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      |++.+.+.++..+..+...| +...+.+....                  +....++++|.++...+..++...+.+..+
T Consensus       170 F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~------------------~~~~~~l~~p~v~~~l~~t~l~~~g~F~~f  231 (394)
T COG2814         170 FLAIAVLALLALLLLWKLLPPSEISGSLPGPL------------------RTLLRLLRRPGVLLGLLATFLFMTGHFALY  231 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCCCCCCcch------------------hHHHHHhcCchHHHHHHHHHHHHcchhhhH
Confidence            99999998888887777776 11111111111                  022347889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      +|+..++++..|++....++.+..++++..+|..++|++.|| +.++...       ....+....... +.......+.
T Consensus       232 tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~-------~~~~l~a~~~l~-l~~~~~~~~~  302 (394)
T COG2814         232 TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI-------AALLLLALALLA-LTFTGASPAL  302 (394)
T ss_pred             HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH-------HHHHHHHHHHHH-HHHhcchHHH
Confidence            999999999999999999999999999999999999999999 6554322       111111111111 2222333444


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~  604 (615)
                      .+...++.+...............+..|+.++.+.+++....++|..+|..++|.++|+.|+....++.+++.+++.++.
T Consensus       303 ~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         303 ALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            44333333332233333333333335679999999999999999999999999999999999999999999999999888


Q ss_pred             HHHhcCCcc
Q 007159          605 NLFATGERV  613 (615)
Q Consensus       605 ~~~~~~~k~  613 (615)
                      +...+.+|+
T Consensus       383 ~~~~~~~~~  391 (394)
T COG2814         383 LLSARKDRR  391 (394)
T ss_pred             HHHHhcccc
Confidence            777665554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-35  Score=313.11  Aligned_cols=376  Identities=41%  Similarity=0.791  Sum_probs=336.1

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcch
Q 007159          235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVA  314 (615)
Q Consensus       235 ~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~  314 (615)
                      .+++++..+-|++.+.+..|+++++++.|++.||+|.|+++..+.++.++++++++++.+.+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46889999999999999999999999999999999999999999999999999999998878788899999999999999


Q ss_pred             hhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 007159          315 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE  393 (615)
Q Consensus       315 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (615)
                      +|+...+.++|.|++||++..++...+..+|.+++-+++|++.+. +||+++|++.++++++..++++....++|.+.+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999988888777


Q ss_pred             ccHHHHhhhhcCCcccccc--ccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007159          394 LRAEEKRHILGGSISKEAV--SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL  471 (615)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i  471 (615)
                      ..++|.+...+++..++..  ...||+.+++++++|.+++..++..++.+.+..|.|.|+++++|++..+.|++.+++.+
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            7777776665554443333  46799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 007159          472 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TPAMAVLCMACSQGSDAFSQSGLYSNHQD  549 (615)
Q Consensus       472 ~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (615)
                      .+.+..+++|.++||+..|.......+++...++..+.++++..+...+  ..+..+.++.+..+..+......+....+
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~  385 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD  385 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence            9999999999999999887566666677888888888888887776554  34456666666667777777777777777


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHhhheec---cCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          550 IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ---RGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       550 ~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~---~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      ..|++.+..+|+.+.+..+.++++|.+.|.+..   ...|+.+|++.+++.+++.+++.++.+.
T Consensus       386 ~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~  449 (466)
T KOG2532|consen  386 IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSG  449 (466)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecC
Confidence            689999999999999999999999999999994   2479999999999999999888777443

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=6.4e-35  Score=313.78  Aligned_cols=402  Identities=16%  Similarity=0.179  Sum_probs=292.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      ++.++..+++.++..+++...++..+|.+.+++|+|..++|++.+++.+++.+++++.|++.||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            34555666777777778888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.+++++++  +++.+++.|++.|++.+...+...+++.+++++++|++++++.+.+..+|.+++|.+++++.+.+|||+
T Consensus       101 ~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~  178 (434)
T PRK11663        101 INILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY  178 (434)
T ss_pred             HHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            999998887  788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCcccc----HHHHhhhhcCCcccccccccc-H-HHHhhhhhHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELR----AEEKRHILGGSISKEAVSVIP-W-KLILSKAPVWALIISHFCHNW  438 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~l~~~~~~~  438 (615)
                      .|++.+++.++..++.....++++++.....    .++..+..+.. .+......+ + ...++++.+|.+.+..++...
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQ-EGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV  257 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhc-cccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            9998887665554444333333332110000    00000000000 000000111 1 125667888888877777777


Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLSITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       439 ~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      ....+.+|+|.|+.+.+|++..+.+...+...++..+++++.|++.||+.++  +...     ....++.......+...
T Consensus       258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~-----~~~~~~~~~~~~~~~~~  332 (434)
T PRK11663        258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMN-----LIFAAGILLSVGSLWLM  332 (434)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHH-----HHHHHHHHHHHHHHHHc
Confidence            7778888999999887899999999999999999999999999999999432  2211     11111111111111112


Q ss_pred             ccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHH
Q 007159          517 SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL  596 (615)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~  596 (615)
                      ...+........+.++.+.............+..+++.+|++.|+.+++.++|..++|++.|++.|..||..+|.+.+++
T Consensus       333 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~  412 (434)
T PRK11663        333 PFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIA  412 (434)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHH
Confidence            22222222222222222111111111222344566789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCccC
Q 007159          597 YIIGTLVWNLFATGERVL  614 (615)
Q Consensus       597 ~l~~~l~~~~~~~~~k~~  614 (615)
                      ++++.++.+...|+++.+
T Consensus       413 ~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        413 AGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHHHHHHHhhhchh
Confidence            888877666555554443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.6e-34  Score=306.55  Aligned_cols=375  Identities=15%  Similarity=0.165  Sum_probs=285.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      +|..++.+.+..++.........+.+|.+.+++|.|..++|++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            35444444444444334444455678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.+++.+++  +++.+++.|+++|++.+...+...+++.+++|+++|++++++...+..+|.++||++++.+.+.+|||+
T Consensus        87 ~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~  164 (390)
T PRK03545         87 SHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRT  164 (390)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHH
Confidence            999999988  889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .|++.+++.++..++.....++.+++++.    .               ..+.++.++++.++...+..++.....+...
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPSEHSG----S---------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAY  225 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCcc----h---------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            99998887766655544443332221110    0               0134557788888776666666666666677


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      +++|.|+++.+|++..+.+.+.....++.++++++.|++.||++++....        ...+.............+...+
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~  297 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI--------AIALLLVCLLLLLPAANSEWHL  297 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH--------HHHHHHHHHHHHHHHhchHHHH
Confidence            88888988888999999999999999999999999999999998763211        1111111111111111222222


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~  604 (615)
                      .+..++.+.+.....+. ......+..|+.++++.|+.+....+|..+||.++|++.|..|++..|.+.+++.+++.++.
T Consensus       298 ~~~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        298 SVLSIFWGIAIMCIGLA-MQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHHhcchHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            33333333333222222 33333345668899999999999999999999999999999999999999999998888777


Q ss_pred             HHHhc
Q 007159          605 NLFAT  609 (615)
Q Consensus       605 ~~~~~  609 (615)
                      ....+
T Consensus       377 ~~~~~  381 (390)
T PRK03545        377 ILIFR  381 (390)
T ss_pred             HHHcc
Confidence            66554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.2e-35  Score=317.49  Aligned_cols=396  Identities=18%  Similarity=0.186  Sum_probs=294.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      .+.++.++++.+++.+.++.++++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            46677788888888999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHhh---hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-
Q 007159          285 ATVLTPVA---ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-  360 (615)
Q Consensus       285 ~~~l~~~~---~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-  360 (615)
                      +.++.++.   ...+++.+++.|++.|++.+...+...+++.+|+|+++|++++|++..+..+|.++++++..++.+.+ 
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            77665542   11278899999999999999999999999999999999999999999999999999999987776643 


Q ss_pred             --CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhh-h--hcCC-cccccccccc--HHHHhhhhhHHHHHHH
Q 007159          361 --GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH-I--LGGS-ISKEAVSVIP--WKLILSKAPVWALIIS  432 (615)
Q Consensus       361 --gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~--~~~l~~~~~~~~~~l~  432 (615)
                        +|+..|.+.+++.++..++.+...++.|++.+..+.++... .  .... .++.+....+  .+..++++.+|...+.
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  266 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFA  266 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHH
Confidence              69999888787777666655555444433221111111000 0  0000 0000000011  2236788999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Q 007159          433 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF  512 (615)
Q Consensus       433 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  512 (615)
                      .++......+...|+|.|+++.+|++..+.++......++.+++.++.|+++||+++|+......     ....+  ...
T Consensus       267 ~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~-----~~~~~--~~~  339 (467)
T PRK09556        267 NIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI-----ALALI--IFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH-----HHHHH--HHH
Confidence            88888888888899999999989999999999999999999999999999999999886543211     11111  111


Q ss_pred             HHHhccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHhhheec--------
Q 007159          513 LTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQ--------  582 (615)
Q Consensus       513 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~l-g~~igp~l~G~l~~--------  582 (615)
                      +............ +..+.++.+..+..........+..|++.+|++.|+.+.+.++ |..++|.+.|++.|        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            1111122233222 3333333222222222223344667789999999999999997 77999999999999        


Q ss_pred             ----cCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          583 ----RGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       583 ----~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                          ..+|+..|.+..++++++.++.+.+
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999999988888887776655

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=4.2e-34  Score=310.52  Aligned_cols=409  Identities=29%  Similarity=0.520  Sum_probs=313.4

Q ss_pred             cCchhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHh----------------------hcCCCchhhHHHHHHHHHHHHHH
Q 007159          201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSK----------------------EFNWNSTTVGLIQSSFFWGYLLT  258 (615)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~g~s~~~~g~i~s~~~l~~~l~  258 (615)
                      ..+.||.+..++++++.+.+.++..++.+.+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            34567888888899889999999999999888876                      78999999999999999999999


Q ss_pred             HHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHH
Q 007159          259 QIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV  338 (615)
Q Consensus       259 ~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  338 (615)
                      +++.|+++||+|+|+++..+.++.+++.+++.++...+++.+++.|+++|++.+...+....++.+++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999888876554335778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHhhhhcC-CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcC--Cccccccccc
Q 007159          339 YSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG--SISKEAVSVI  415 (615)
Q Consensus       339 ~~~~~lG~~ig~~l~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  415 (615)
                      ..+..+|.++++++++.+.+. .|||+.|++.+++.++..++++...++.|+++++..+++.+...+.  ..........
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence            999999999999999999988 4999999998888777766666655555543332222222111110  0011111234


Q ss_pred             cHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Q 007159          416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (615)
Q Consensus       416 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~  495 (615)
                      +++.+++++.+|...+..++..+..+.+.+|+|.|+++.+|++..+.++..++..++..++.++.|++.||+++++....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999887654332


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHH
Q 007159          496 A-VRKIMQSIGFLGPAFFLTQLSH-VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFG  573 (615)
Q Consensus       496 ~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~ig  573 (615)
                      . .+.....++........+.... .......+.++.+.++..............+..|+.+|.+.|+.+....+++.++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~  412 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIA  412 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence            1 1122222222222222211111 2223333333333333333333333344556667899999999999999999999


Q ss_pred             HHHhhheecc---CChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          574 TAATGYILQR---GSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       574 p~l~G~l~~~---~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      |.+.|++.+.   .+|..+|.+.+++.+++.++.....+
T Consensus       413 p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       413 STLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             HHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            9999999875   34888999998888888777665433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.4e-33  Score=301.14  Aligned_cols=384  Identities=19%  Similarity=0.260  Sum_probs=285.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      .+|+.++.+++.+++.++++.+.+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            35788888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-----
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-----  358 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-----  358 (615)
                      ++.+++++++  +++.+++.|++.|++.+...+....++.+++|+++|+++++++..+..+|.++++++++++.+     
T Consensus        85 ~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        85 IASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999988  788899999999999999999999999999999999999999999999999999999998864     


Q ss_pred             -CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHh---hh-h-cC-----Cc---cccccc-cccHHHHhhh
Q 007159          359 -KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR---HI-L-GG-----SI---SKEAVS-VIPWKLILSK  423 (615)
Q Consensus       359 -~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~-----~~---~~~~~~-~~~~~~l~~~  423 (615)
                       ..|||++|++.++..++..++.....++.|++.+...+++++   +. . +.     ..   .+.... ...++.++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence             469999999988877766555555555555432111111110   00 0 00     00   000000 12344444 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQV-LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ  502 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~-~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~  502 (615)
                      +.+|...+..++.....+.+.+|+|.|+++. .|++..+.+.+.....++..++.++.|+++||+++|+.....      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~------  315 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL------  315 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH------
Confidence            7788888888888888889999999999873 467888889999999999999999999999999877532111      


Q ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHH-HhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhee
Q 007159          503 SIGFLGPAFFLTQLSHVRTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL  581 (615)
Q Consensus       503 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~  581 (615)
                      ...+....+.+.. .... ....+.++.+ ..+.............+..+++.++++.|+.+...++|++++|.+.|.+.
T Consensus       316 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       316 PYLFAAAGWLLAS-ATDH-NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHHHHHHH-hcCC-HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            0111111111111 1112 2222211111 11111111111122233467799999999999999999999999999999


Q ss_pred             ccC-ChhHHHHHHHHHHH
Q 007159          582 QRG-SWDDVFKVAVVLYI  598 (615)
Q Consensus       582 ~~~-g~~~~f~~~~~~~l  598 (615)
                      |.. +|...+.+++++.+
T Consensus       394 ~~~g~~~~~~~~~~~~~~  411 (412)
T TIGR02332       394 DATGSFNSGLWFVAALLV  411 (412)
T ss_pred             ccCCCCchhHHHHHHHHh
Confidence            985 59999887776543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.8e-33  Score=297.38  Aligned_cols=388  Identities=28%  Similarity=0.449  Sum_probs=298.9

Q ss_pred             HHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcc
Q 007159          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~  295 (615)
                      +++..++...++...|.+.+++|++..++|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--
Confidence            345567778888999999999999999999999999999999999999999999999999999999999999988888  


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +++.+++.|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999988877766


Q ss_pred             HHHHHHhhhcCCCCCCccccHHHHhhhhcC------CccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          376 WFALWLKKAYSSPKEDPELRAEEKRHILGG------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      ..++.....++++++++...++++....+.      ...+.......+++.+++++++...+..++.......+..++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            665555444444332221111111110000      01111122335677888999999988888888888899999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM  529 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  529 (615)
                      |+++.+|.+..+.+++.....++.+++.++.|++.||+++|+....... .....+.+...+..............+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFAR-KTAIIAGLVLSLLMFATNYVNIPYAALALV  319 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            9999899999999999999999999999999999999999862221111 111111111222222222222333333333


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC-hhHHHHHHHHHHHHHHHHHHH
Q 007159          530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g-~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      .++.+..+..+.......+..+++.||++.|+.+.+..+|..++|.+.|++.|..| |...|.+.+++++++.++..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       320 ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            33444333444444556667788999999999999999999999999999999987 999999988888877766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=4.4e-32  Score=287.83  Aligned_cols=367  Identities=16%  Similarity=0.171  Sum_probs=269.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      .|+.++.+....+..........+.+|.+.+++|+++.++|+..+++.++..+++++.|++.||+|||++++.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45554444444444444444555678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.+++.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++||++++++.+.+|||+
T Consensus        98 ~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            999988887  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .|++.+++.++..++.....++.+++++. .                  ..+.+..+++|.++...+..++.....+...
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  236 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPSH-Q------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFF  236 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCccccc-c------------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99988776665444443333332211100 0                  0123456788888887776666666666667


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      ++++.++.+.+|++....+.++...+++.+++.++.+++.||.+++ ...      .......+..+.+... .......
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~------~~~~~~~~~~~~l~~~-~~~~~~~  308 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALA------GAPLVLAVSALVLTLW-GSDKIVA  308 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHH------HHHHHHHHHHHHHHHH-hhhHHHH
Confidence            7764444455799999999999999999999999999999995433 111      1111111111111111 1122222


Q ss_pred             HHHHHHHHhhhhhhhhhhhh-hhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQGSDAFSQSGLY-SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      ....++.+.+. ....+... ...+.. +++.+++.++.....++|..+||.++|++.|..|+...+...+++.++..+
T Consensus       309 ~~~~~l~G~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        309 TGVAIIWGLTF-ALVPVGWSTWITRSL-ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            33333333333 34444444 344444 566778888888888999999999999999999999888888776655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.5e-32  Score=295.23  Aligned_cols=402  Identities=16%  Similarity=0.207  Sum_probs=279.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ++|.++..+++.....+.+...++...|.+.++ |++..+.|++.+.+.+++.++++++|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            346666666666666677777778888888888 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh--ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHH-HHhhhHhhhhcCC
Q 007159          284 VATVLTPVAA--RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSV-TGLAVSPILIQKF  360 (615)
Q Consensus       284 i~~~l~~~~~--~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-ig~~l~~~l~~~~  360 (615)
                      ++.+++++.+  ..+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. ++|+++..+....
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            9988877653  125677899999999999999898889999999999999999999999998864 5565544443445


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcC---Ccccccccccc--HHHHhhhhhHHHHHHHHHH
Q 007159          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG---SISKEAVSVIP--WKLILSKAPVWALIISHFC  435 (615)
Q Consensus       361 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~l~~~~~~~~~~l~~~~  435 (615)
                      +||+.|++.+++.++..++.....++++++....+.++.+.....   ....+..+..+  .+.+++++.+|...+..++
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            999999988877666555554444443332111111100000000   00000000111  2336778889988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 007159          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ  515 (615)
Q Consensus       436 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  515 (615)
                      .....+....++|.|+++..|++..+.+.+..+..++.+++.++.|+++||+++++....    ......+.........
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~----~~~~~~l~~~~~~~~~  340 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYW  340 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchH----HHHHHHHHHHHHHHHH
Confidence            887888888999999999889999999998888899999999999999999954322110    1111111111111111


Q ss_pred             hccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH-HHHHhhheeccCChhHHHHHH
Q 007159          516 LSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVF-GTAATGYILQRGSWDDVFKVA  593 (615)
Q Consensus       516 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~i-gp~l~G~l~~~~g~~~~f~~~  593 (615)
                      ........ ..+..+.++...............+..|++.+|++.|+.+....+|+.+ +|.+.|++.|..||+..|+++
T Consensus       341 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~  420 (452)
T PRK11273        341 LNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM  420 (452)
T ss_pred             HhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHH
Confidence            11122222 2222222222221211111222345677899999999999998888765 799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 007159          594 VVLYIIGTLVWNLFATG  610 (615)
Q Consensus       594 ~~~~l~~~l~~~~~~~~  610 (615)
                      +++++++.+....+.+.
T Consensus       421 ~~~~~~~~~~~~~~~~~  437 (452)
T PRK11273        421 IGGSILAVILLIVVMIG  437 (452)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            88888887766655443

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.7e-32  Score=291.25  Aligned_cols=375  Identities=15%  Similarity=0.155  Sum_probs=281.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      +||+....+++.+++.......+++.+|.+.+++|+|..+++++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34667777777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCCc
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGW  362 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~gw  362 (615)
                      ++.+++++++  +++.+++.|++.|++.+...+...+++.+++|+++|+++++.......+|..++|.+.+.+.. ..||
T Consensus        84 i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            9999888887  788899999999999999999999999999998999999999988889999999999887764 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      |+.|++.+++.++..++.+....  |+.+++..+ +..        ..      .+ ...++.++.+.+..++.....+.
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~--p~~~~~~~~-~~~--------~~------~~-~~~~~~~~~~~~~~~~~~~~~~~  223 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFSEF--PALGKHAPK-ADK--------PV------AK-EKWGIGVLFLAIAALLYILAQLT  223 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--ccccccCcc-ccC--------cc------cc-ccCChHHHHHHHHHHHHHHHHHH
Confidence            99999888776665544433221  111111000 000        00      00 01234566666777777777788


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      +..|+|.|+++.+|++..+.+.+.+...++..+++++.|++.||+++|+.....       .........+... ..+..
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~-------~~~~~~~~~~~~~-~~~~~  295 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL-------AGLALVLMYLFVN-TDDPS  295 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH-------HHHHHHHHHHHHH-cCCch
Confidence            889999999988999999999999999999999999999999999998654321       1111111111111 22223


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          523 AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      ...+..+..+.+..... +.......+..++.++...|.......+|..++|.+.|++.|..|++..+++.+++++++.+
T Consensus       296 ~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        296 HLLYAILGLGFFSSAIY-TTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            33333333333333332 22333333444556678889999999999999999999999999999999888888877765


Q ss_pred             HHHHH
Q 007159          603 VWNLF  607 (615)
Q Consensus       603 ~~~~~  607 (615)
                      +....
T Consensus       375 ~~~~~  379 (394)
T PRK03699        375 MCILL  379 (394)
T ss_pred             HHHHH
Confidence            54443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.9e-32  Score=288.39  Aligned_cols=383  Identities=19%  Similarity=0.235  Sum_probs=283.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      +++|.++.+++...+..+++....++..|.+.+++|+++.++|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            46788888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      .++.+++.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+|
T Consensus        91 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         91 GLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            99888888887  7888999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhh---hhhHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILS---KAPVWALIISHFCHNWG  439 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~  439 (615)
                      ++.|++.+++.++..++.....+++++..++...++.+         +    ...+..++   .+..+.+.+..++....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR---------A----PVLRALFGEGRATATLLLWISYFFTLIV  235 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh---------h----hhHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999877665555444444334332211110000000         0    01111111   22333344444444555


Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      .+....++|.|+++ .|++..+.+.......++.++++++.|++.||+++++....       ........+..+.. ..
T Consensus       236 ~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~-------~~~~~~~~~~~~~~-~~  306 (406)
T PRK11551        236 LYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLL-------IYAGILASLAALAA-AP  306 (406)
T ss_pred             HHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHh-cC
Confidence            66777889999987 69999999999999999999999999999999998854321       11111111111111 12


Q ss_pred             cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHH
Q 007159          520 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYI  598 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l  598 (615)
                      +...+.+..++.+.+.....+.......+..++++||++.|+.+.+..+|..++|.+.|++.+. .++...+.....+.+
T Consensus       307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~  386 (406)
T PRK11551        307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVIL  386 (406)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHH
Confidence            2222223333333333333333334455667889999999999999999999999999999987 456666766666666


Q ss_pred             HHHHHHHHHhc
Q 007159          599 IGTLVWNLFAT  609 (615)
Q Consensus       599 ~~~l~~~~~~~  609 (615)
                      ++.++.+...+
T Consensus       387 ~~~~~~~~~~~  397 (406)
T PRK11551        387 VAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHHhc
Confidence            66555554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4e-32  Score=288.19  Aligned_cols=375  Identities=13%  Similarity=0.154  Sum_probs=278.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ..|.....+++..+.... ....++.+|.+.+++|+|..++|++.+++.+++.+++++.|++.||+|||+++..+.++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             hHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            345555555554444322 2557789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-Cc
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GW  362 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-gw  362 (615)
                      ++.+++++++  +++.+++.|+++|++.+...+....++.++++ ++|+++++++..+..+|..+|+.+++++.++. +|
T Consensus        86 ~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w  162 (393)
T PRK09705         86 VGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW  162 (393)
T ss_pred             HHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999998  78889999999999999999999999999996 88999999999999999999999999988875 89


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      |+.+.+.++..++....++...++.++++++.+             .      ..++.+++++.|.+.+..++....+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~------~~~~~l~~~~~~~l~~~~~~~~~~~~~  223 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVASSHKTT-------------T------TPVRVVFTPRAWTLGVYFGLINGGYAS  223 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-------------c------CCcccccCHhHHHHHHHHHHHHHHHHH
Confidence            998876665544433333332222221110000             0      012234567777777777777778888


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      ..+++|.|+++ +|++..+.+.+.++..++.++++++.+++.||+++++....+       ..+...+............
T Consensus       224 ~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~  295 (393)
T PRK09705        224 LIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLA-------LVLQLVGFCGFIWLPLQLP  295 (393)
T ss_pred             HHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-------HHHHHHHHHHHHHccchHH
Confidence            88999999987 799999999999999999999999999999999988543322       1111111111111111112


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccC-cchhhHHHHHHHHHHHHHHHHHHHHhhheeccC-ChhHHHHHHHHHHHHH
Q 007159          523 AMAVLCMACSQGSDAFSQSGLYSNHQDIG-PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYIIG  600 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~-g~~~~f~~~~~~~l~~  600 (615)
                      ...  ..+.+.+.....+.......+..+ ++++|+..|+.+....++..++|.+.|++.|.. +|...|.+.+++++++
T Consensus       296 ~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        296 VLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             HHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            211  122233333333333334445554 478999999999999999999999999999985 4888888888888877


Q ss_pred             HHHHHHHhcCC
Q 007159          601 TLVWNLFATGE  611 (615)
Q Consensus       601 ~l~~~~~~~~~  611 (615)
                      .++...+.+++
T Consensus       374 ~~~~~~~~~~~  384 (393)
T PRK09705        374 MIITLRFAPAR  384 (393)
T ss_pred             HHHHHHhcccc
Confidence            77666655444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.6e-31  Score=290.36  Aligned_cols=392  Identities=14%  Similarity=0.115  Sum_probs=275.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ++++.+...+...+........+.+..|.+.+++|++..+++++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34455555556666666667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-----
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-----  358 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-----  358 (615)
                      ++.+++++++  +++.++++|++.|++.+.. .....++.+++|+++|++++++......+|..+++.+.+.+..     
T Consensus       113 ~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        113 PAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998888887  7888889999999998865 4456788999999999999999987777777777666654421     


Q ss_pred             ----CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHH
Q 007159          359 ----KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF  434 (615)
Q Consensus       359 ----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  434 (615)
                          ..|||+.|++.+++.++..++.+...++.|+..  ..+.+++    .. .++......++..++++++|.+.+..+
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~--~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN--YRELKKS----GT-MPKDSFSKVLRYGVTNYRTWILALTYG  262 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc--hhhHHhc----Cc-cccccHHHHHHHHHcCchhHHHHHHHH
Confidence                258999999988887776666555544433221  0000000    00 000011123455677888888777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 007159          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT  514 (615)
Q Consensus       435 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~  514 (615)
                      +.......+..++|.|+.+.+|++...++.+.++..++.+++++++|+++||+++|+....  +.....+...+.++.+.
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~  340 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFCI  340 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHH
Confidence            6655666777889999988889999999999999999999999999999999987632211  11111122222222112


Q ss_pred             HhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHH
Q 007159          515 QLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV  594 (615)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~  594 (615)
                      ...........+..+++.................++.++++|++.|+.+....+|..++|.+.+ ..+..+|...|.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~  419 (476)
T PLN00028        341 WLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMG  419 (476)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHH
Confidence            2222222222222222222211122222333444567789999999998888888888887765 223467999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 007159          595 VLYIIGTLVWNLFA  608 (615)
Q Consensus       595 ~~~l~~~l~~~~~~  608 (615)
                      ++.+++.++.++.+
T Consensus       420 ~~~~i~~~~~~~~~  433 (476)
T PLN00028        420 VMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHHHhee
Confidence            98888888776664

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.3e-31  Score=298.88  Aligned_cols=392  Identities=15%  Similarity=0.142  Sum_probs=273.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      +..|.++++++++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            44677777778888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC---
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK---  359 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~---  359 (615)
                      +++.+++++++  +++.++++|++.|++.+...+...+++.+++|+++|++.++++..+..+|.++++.++..+...   
T Consensus       243 ~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       243 GFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999998887  7888999999999999999999999999999999999999999999999999999887766543   


Q ss_pred             ----------CCchHHHHHHHHHHHHHHHHHHhhhcCCCCC---CccccHHH--Hhhhh---------------------
Q 007159          360 ----------FGWPSVFYSFGSLGSIWFALWLKKAYSSPKE---DPELRAEE--KRHIL---------------------  403 (615)
Q Consensus       360 ----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~---------------------  403 (615)
                                .+||+.+++.++..++.++ ..+..++.|.-   +.+..+..  .+...                     
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll-~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIG-ALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                      3588888776665444433 33333443321   00000000  00000                     


Q ss_pred             ---cCC-cc--ccccc----------------cccHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 007159          404 ---GGS-IS--KEAVS----------------VIPWKLILSK---APVWALIISHFCHNWGTFILLTWMPTYYNQV----  454 (615)
Q Consensus       404 ---~~~-~~--~~~~~----------------~~~~~~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~----  454 (615)
                         ... ..  .....                +..++.+++.   +..+.+++..++..++++++..|+|.++.+.    
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~  479 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD  479 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000 00  00000                0123333333   2346677778888899999999999876541    


Q ss_pred             h-----------------CCCh----------------------------------------------------------
Q 007159          455 L-----------------KFNL----------------------------------------------------------  459 (615)
Q Consensus       455 ~-----------------g~s~----------------------------------------------------------  459 (615)
                      +                 +++.                                                          
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  559 (742)
T TIGR01299       480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT  559 (742)
T ss_pred             HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence            0                 0000                                                          


Q ss_pred             -----------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q 007159          460 -----------------------------------TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI  504 (615)
Q Consensus       460 -----------------------------------~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~  504 (615)
                                                         ....+...+..++.+++.++.|++.||+|||+.+..+        
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~--------  631 (742)
T TIGR01299       560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGS--------  631 (742)
T ss_pred             chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH--------
Confidence                                               0123345566788899999999999999999654321        


Q ss_pred             HHHHHHHHHHHhcccc-chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          505 GFLGPAFFLTQLSHVR-TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       505 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                       +++.+++.+.+.... ...+++..++++++..+..........+.+|++.|++++|+.++...+|.+++|+++|.+.+.
T Consensus       632 -~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       632 -MVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             -HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             112221111111122 222333333333333333333333455667779999999999999999999999999998875


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHH
Q 007159          584 GSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       584 ~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                       +...+|++++++.++++++.+++
T Consensus       711 -~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       711 -TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHhC
Confidence             45677777777777766665554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.3e-31  Score=292.65  Aligned_cols=370  Identities=15%  Similarity=0.159  Sum_probs=282.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      |+|.+++.+++..+...++.++++.++|.+.+++|.+..+++|+.+.|.+++.++.+++|+++||+|||++++.+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcc-cccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      ++.+++++++  +++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+++||
T Consensus        83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999988  8899999999999999999998888887776 678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc-ccHHHH--------------hhhhcCC---------------------
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPE-LRAEEK--------------RHILGGS---------------------  406 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~---------------------  406 (615)
                      ||.|++...+.++..++.....+++++++.+ .+....              .......                     
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999988777666655555544443322111 110000              0000000                     


Q ss_pred             --ccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          407 --ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIA  484 (615)
Q Consensus       407 --~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~  484 (615)
                        ..+......+ ..+++++.++...+..++.....++...++|.|++..+|+++.++|+......++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000011112 2467788887777777777777788888999999999999999999999999999999999999999


Q ss_pred             HHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHH
Q 007159          485 DTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN  563 (615)
Q Consensus       485 dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~  563 (615)
                      ||+++|+....+.  .+..++..    .+......... ......++.+.+.+....+.........+++++|.+.++.+
T Consensus       320 ~r~g~~~~~~~g~--~~~~~~~~----~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (495)
T PRK14995        320 SRLGLRLVATGGM--ALSALSFY----GLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET  393 (495)
T ss_pred             HHcCchHHHHHHH--HHHHHHHH----HHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence            9999875432211  11111111    11111122222 23333444454544444455555667788899999999999


Q ss_pred             HHHHHHHHHHHHHhhheec
Q 007159          564 TAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       564 ~~~~lg~~igp~l~G~l~~  582 (615)
                      +...+|+.+|+.+.|.+.+
T Consensus       394 ~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        394 MAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998864

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.2e-31  Score=281.64  Aligned_cols=372  Identities=16%  Similarity=0.174  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      +.......+..........+.+|.+.+++|++..++|++.+.+.+++.++++++|++.||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34444555666677778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHH
Q 007159          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (615)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~  368 (615)
                      +++++  +++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..+||.+++++.+..|||+.|++
T Consensus        85 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            99988  8899999999999999998898899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      .+++.++..+......++.+++.+ ...+                 ..+ +.++++..|...+..++.....+...++++
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~-~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAK-GGLR-----------------EQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIK  223 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcccc-cCHH-----------------HHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888766655544444443322111 0000                 011 245666666666555555555556667788


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC  528 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  528 (615)
                      .|+.+.+|+++.+.+++.+...++.++++++.+++.||+++++......       .+......+............+..
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~  296 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTD-------FIIVLALLMLFFFGGMKTASLIFA  296 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8888878999999999999999999999999999999999886443211       111111111111111222222222


Q ss_pred             HHHHhhhhhhhhhhhhhhhhc-cCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHHHHHHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQD-IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      ++.+.+.....++......+. .+++..+.+  ..+....+|..+||.+.|++.|. .+|+..+.+.++++++.......
T Consensus       297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        297 FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            233333333333322223333 334555554  34677899999999999999995 78999999988777776655544


Q ss_pred             HhcC
Q 007159          607 FATG  610 (615)
Q Consensus       607 ~~~~  610 (615)
                      ..++
T Consensus       375 ~~~~  378 (382)
T PRK10091        375 YGRY  378 (382)
T ss_pred             Hhhh
Confidence            4433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=8.4e-31  Score=279.53  Aligned_cols=384  Identities=14%  Similarity=0.095  Sum_probs=282.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      ++.+...+.+.+..+...+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44566667777777777788888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      +++.+++.+++  +++.+++.|++.|++.+...+...+.+.|++|+++|.+++++......+|..+||.+++.+.+..+|
T Consensus        89 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         89 ILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            99988888887  7888999999999999998899999999999999999999999888889999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      |+.|++.+++.++..+......++.+++.++..+.+             ....+++.++++|.++...+..++.......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLK-------------ELGRDYKLVLKNRRFVAGALALGLVSLPLLA  233 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHH-------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            999998887776665544444333322111110000             0112456778899888887777666666666


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      ..++.|.|+.+.+|+++.+.+.......++.+++.++.+++.||+++++....+.  ....++.......  ........
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~  309 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGL--WPMVAGLLLAALA--TVISSHAY  309 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHH--HHcccccH
Confidence            6777899988889999999998888888888999999999999999886443221  1111111111111  10112222


Q ss_pred             -HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHH
Q 007159          523 -AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       523 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~  601 (615)
                       +..+...+.+.+..... +..........++++|++.++.+....++..+|+.+.|.+.+..+........+++.++..
T Consensus       310 ~~~~~~~~~~g~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  388 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLAN-AGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWL  388 (406)
T ss_pred             HHHHHHHHHHHHHHHHHh-hhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHH
Confidence             22233333333332222 2222233344568999999999999999999999999999998775555444444444443


Q ss_pred             HHHHH
Q 007159          602 LVWNL  606 (615)
Q Consensus       602 l~~~~  606 (615)
                      ++...
T Consensus       389 ~~~~~  393 (406)
T PRK15402        389 LLVRI  393 (406)
T ss_pred             HHHHH
Confidence            33333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=4.7e-31  Score=283.64  Aligned_cols=388  Identities=14%  Similarity=0.125  Sum_probs=265.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcC---CCchhhHHH---HHHHHHHHHHHHHhhHHhhhhcCCchHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN---WNSTTVGLI---QSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g---~s~~~~g~i---~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~  277 (615)
                      +++..+..+++..++.+++...++...|.+.++++   .+..+.+.+   ++..+++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            34556667777888889999999999999999984   555544444   444455555999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccC------hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhh
Q 007159          278 GVIWWSVATVLTPVAARIG------LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (615)
Q Consensus       278 ~~~l~~i~~~l~~~~~~~~------~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~  351 (615)
                      +.++++++.+++++++++.      ...++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887321      2358899999999999999999999999999999999999988888888888887


Q ss_pred             hHhhhh--------cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhh
Q 007159          352 VSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK  423 (615)
Q Consensus       352 l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (615)
                      +...+.        ..+|||+.|++.+++.++... +....++.++    .+. +..        +   +..++++++++
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~----~~~-~~~--------~---~~~~~~~l~~~  241 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQ----QET-RAL--------K---EAGSLKGLWRN  241 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCch----HHH-hhh--------c---ccccHHHHHhh
Confidence            665543        257999999976665544322 2111222111    000 000        0   01256778888


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHH
Q 007159          424 APVWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ  502 (615)
Q Consensus       424 ~~~~~~~l~~~~~-~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~  502 (615)
                      ++.+.+.+..++. ....+.+.+|+|.|+++.+|++..+.+...++..+...++..+.|+++||+++|+......    .
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~----~  317 (432)
T PRK10406        242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFG----S  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH----H
Confidence            8887766655443 5667788899999998888999989998888888888888999999999999886432111    0


Q ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhh-hhhhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHhhhe
Q 007159          503 SIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQS-GLYSNHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYI  580 (615)
Q Consensus       503 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~gl~~~~~~l-g~~igp~l~G~l  580 (615)
                      ........+ +............+.+..+..+....... ......+..|++.|+++.|+.+.+.++ .+...|.+.+.+
T Consensus       318 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        318 LAALFTVPI-LSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             HHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            011111111 11111122222222222222222222222 223345667789999999999887665 355578888866


Q ss_pred             eccCChhHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 007159          581 LQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV  613 (615)
Q Consensus       581 ~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~~k~  613 (615)
                      .+.+.+...+++.+++.+++.+..+++.++.|.
T Consensus       397 ~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~  429 (432)
T PRK10406        397 KSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKG  429 (432)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            434446667777777777777666666655554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=6.3e-32  Score=284.09  Aligned_cols=372  Identities=18%  Similarity=0.185  Sum_probs=274.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      |+.++......+.. .....+++..|.+.+++|+|..++|++.+++.+++.++++++|+++||+|||+++..+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~   81 (377)
T TIGR00890         3 WYVLVGTVIMCFTS-GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG   81 (377)
T ss_pred             EEEeHHHHHHHHHh-hHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence            44444444444433 34666788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      .+++++++  +++.+++.|++.|++.+...+.....+.++++ ++|++++++...+..+|..+++++.+.+.+..|||+.
T Consensus        82 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (377)
T TIGR00890        82 FTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAA  158 (377)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHH
Confidence            99999988  78889999999999999888888888999985 6899999999999999998877777777788899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007159          366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT  445 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  445 (615)
                      |++.+++.++..+..+...+++++++.+.+.+.            ..+....++.++++.++.+.+..++..........
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (377)
T TIGR00890       159 FIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIG  226 (377)
T ss_pred             HHHHHHHHHHHHHHHHHheecCchhccccCccc------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHH
Confidence            999888877766655544443322111100000            00012345677888888777766666666666666


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA  525 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  525 (615)
                      +.+.|.++ +|.+..+.+.+.+...++..+++++.|++.||+++|+......       .....................
T Consensus       227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  298 (377)
T TIGR00890       227 LYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVF-------GISAVGMAAMLFIPMLNDVLF  298 (377)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-------HHHHHHHHHHHHcccchhHHH
Confidence            77777655 7899888999999999999999999999999999886543211       111111111111111111111


Q ss_pred             -HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHH
Q 007159          526 -VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       526 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~  601 (615)
                       ......+.+.............+..++++++++.|+.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.
T Consensus       299 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       299 LATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence             2222222222222222233445567789999999999999999999999999999999999999999888777654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=4.4e-31  Score=276.58  Aligned_cols=359  Identities=14%  Similarity=0.061  Sum_probs=258.1

Q ss_pred             HhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChH
Q 007159          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (615)
Q Consensus       219 ~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~  298 (615)
                      +......+++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+  +++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHH
Confidence            345566788999999999999999999999999999999999999999999999887665555544433222224  788


Q ss_pred             HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHH
Q 007159          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (615)
Q Consensus       299 ~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  378 (615)
                      .+++.|++.|++.+. .+.....+++++|+++|++++++...+..+|.++++++++++.+.+|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 5566667799999999999999999999999999999999999999999999998888777766


Q ss_pred             HHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007159          379 LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (615)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s  458 (615)
                      ++....+++|++.++..+.+             ....++++++++|.+|.+.+..++.....+.+.+|+|.|+++ .|++
T Consensus       160 ~~~~~lp~~p~~~~~~~~~~-------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s  225 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFGFK-------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLE  225 (368)
T ss_pred             HHHHHcCCCCCCCCCCcchH-------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence            66666665543321110000             001246778999999999999999999999999999999977 6888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhh
Q 007159          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF  538 (615)
Q Consensus       459 ~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  538 (615)
                      .. .+....+..+.+.++   .+++.||..|++.....   .....  +..+..+............+.+..+.+.+...
T Consensus       226 ~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~---~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  296 (368)
T TIGR00903       226 DI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIY---IRAAA--LLIAAFFLALAFELNRLALFAFIGIAGLLMLP  296 (368)
T ss_pred             hH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHH---HHHHH--HHHHHHHHHHHHccccHHHHHHHHHHHHhhhh
Confidence            65 566655555555555   47788887654211100   00001  11111111111112222223233322222222


Q ss_pred             hhhhhh-hhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHH
Q 007159          539 SQSGLY-SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       539 ~~~~~~-~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      ..+... ...+..|++.||++.|+.+...++++.++|++.+.+..  +....|.+.++..+++.+..+
T Consensus       297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            222233 34556777899999999999999999999999998874  788888888888888777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=3e-31  Score=282.24  Aligned_cols=380  Identities=15%  Similarity=0.176  Sum_probs=269.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      +++|+.+..+++.++...++...+++..|.+.+++|++..++|++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45688888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-  361 (615)
                      +++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ 
T Consensus        88 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        88 SAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999988887  788899999999999999999999999999999999999999999999999999999999888766 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccH-HHHhh----hhcCCccccc-cc--cccHHHH-hhhhh-HHHHH
Q 007159          362 -WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-EEKRH----ILGGSISKEA-VS--VIPWKLI-LSKAP-VWALI  430 (615)
Q Consensus       362 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~-~~--~~~~~~l-~~~~~-~~~~~  430 (615)
                       ||+.|++.++..++..+ .....++++...++.+. +...+    ..+.....+. .+  ....+.. .+.+. +..+.
T Consensus       166 ~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (405)
T TIGR00891       166 GWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLV  244 (405)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHH
Confidence             99999875544443332 22223332211110000 00000    0000000000 00  0000000 01111 22223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Q 007159          431 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA  510 (615)
Q Consensus       431 l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  510 (615)
                      +...+..........++|.|+.+.+|++..+.+.+.+...++.++++++.+++.||+++|+......     ... ....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~-----~~~-~~~~  318 (405)
T TIGR00891       245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSL-----LAG-QLLI  318 (405)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHH-----HHH-HHHH
Confidence            3333334444566678899998889999999999999999999999999999999999986543221     011 0111


Q ss_pred             HHHHHhccccchHH-HHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC-hhH
Q 007159          511 FFLTQLSHVRTPAM-AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDD  588 (615)
Q Consensus       511 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g-~~~  588 (615)
                      ..+..  .....+. .+...+.+.+.............+..+++.+|++.|+.+.+..+|..++|++.|++.|..| |+.
T Consensus       319 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~  396 (405)
T TIGR00891       319 IPVFA--IGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT  396 (405)
T ss_pred             HHHHH--hCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            11111  1222222 2222333333333333333345566778999999999999999999999999999999877 776


Q ss_pred             HHHHH
Q 007159          589 VFKVA  593 (615)
Q Consensus       589 ~f~~~  593 (615)
                      ++...
T Consensus       397 ~~~~~  401 (405)
T TIGR00891       397 ALASL  401 (405)
T ss_pred             hHHhh
Confidence            66543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=4.5e-31  Score=284.35  Aligned_cols=404  Identities=18%  Similarity=0.238  Sum_probs=284.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      +|..+..+.+.+...+.+...+....|.+.+ +|++..+.+++.+++.++..++.++.|+++||+|||+++..+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4566666666677777777777777777765 599999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhhhc--cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCC
Q 007159          285 ATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFG  361 (615)
Q Consensus       285 ~~~l~~~~~~--~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~g  361 (615)
                      +.+++++.+.  .+++.+.+.|++.|++.+...+.....+.+++|+++|++++++.+.+..+|..+++.+.+.+.. ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            8887765431  2566778899999999999999999999999999999999999999999999999887765443 579


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhh----cCCcccc-ccccccHHHHhhhhhHHHHHHHHHHH
Q 007159          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL----GGSISKE-AVSVIPWKLILSKAPVWALIISHFCH  436 (615)
Q Consensus       362 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~  436 (615)
                      ||+.|++.+++.++..++.+...++++++.+..+.++.+...    ....+.+ ..+....+.+++++.+|...+..++.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence            999999888877665555444444433221100000000000    0000000 00001123467888888888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          437 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       437 ~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      ....+...+++|.|+++..|+++.+.+++..+..++.+++.++.|++.||+++++....+.  .....  ..........
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~--~~~~~--~~~~~~~~~~  339 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV--FFMTL--VTIAVIVYWM  339 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH--HHHHH--HHHHHHHHHh
Confidence            7777888899999999988999999999999999999999999999999997554322111  11111  1111111111


Q ss_pred             ccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH-HHHHHHhhheeccCChhHHHHHHH
Q 007159          517 SHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKVAV  594 (615)
Q Consensus       517 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~-~igp~l~G~l~~~~g~~~~f~~~~  594 (615)
                      ......+.. +..+..+.+..+..........+..+++.+|++.|+.+....+|+ .++|.+.|.+.|..||..++.+..
T Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~  419 (438)
T TIGR00712       340 NPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  419 (438)
T ss_pred             cCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence            111122222 222222221111111111223455677899999999999888875 689999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCcc
Q 007159          595 VLYIIGTLVWNLFATGERV  613 (615)
Q Consensus       595 ~~~l~~~l~~~~~~~~~k~  613 (615)
                      ++.+++.+..+++.+++|+
T Consensus       420 ~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       420 GGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHHHHHHHHHHHhhccC
Confidence            8888888888887777764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=2.5e-30  Score=273.10  Aligned_cols=387  Identities=14%  Similarity=0.135  Sum_probs=278.1

Q ss_pred             CcccccCchh--HHHHHHHHHHHHHHhhhhhHHHHhHHHHHh-hcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCc
Q 007159          196 SPWWEQFPKR--WVVVLLCFSAFLLCNMDRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK  272 (615)
Q Consensus       196 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk  272 (615)
                      +..|+...|+  ++.+.+..+.+++.+.....+++..+.+.+ ++|+|..|.+++.+++.+++.++.++.|++.||+|.|
T Consensus        21 ~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R  100 (462)
T PRK15034         21 PAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR  100 (462)
T ss_pred             hHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            3345444333  567888888888889999999999988866 8999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhh---ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007159          273 PVLGFGVIWWSVATVLTPVAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG  349 (615)
Q Consensus       273 ~~l~~~~~l~~i~~~l~~~~~---~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig  349 (615)
                      +++.++.++.++..++++++.   ..+++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++
T Consensus       101 ~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~  179 (462)
T PRK15034        101 RWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVM  179 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence            999999999999999888761   12789999999999998 67889999999999999999999999977777777766


Q ss_pred             hhhHhhhh-----c-------------CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccc
Q 007159          350 LAVSPILI-----Q-------------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEA  411 (615)
Q Consensus       350 ~~l~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (615)
                      +++.+.++     +             ..+|+.++++..++.++..++.++..++.++.+.  ..               
T Consensus       180 ~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--~~---------------  242 (462)
T PRK15034        180 QLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--SI---------------  242 (462)
T ss_pred             HHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--CH---------------
Confidence            66655433     2             2336777777666666555555544333322111  00               


Q ss_pred             cccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007159          412 VSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (615)
Q Consensus       412 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~  491 (615)
                         ..++.++|+|..|.+.+.+++.+.++.++..++|.|+++.+  +.........+..+...+.++++|+++||+|+++
T Consensus       243 ---~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        243 ---ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             ---HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence               13455789999999999999988888888889999998855  3333333344556778889999999999999997


Q ss_pred             ccHHHHHHHHHHHHHHHHH-HHHHHhccc--cchHHHHHHHHHHhhhhhhhhhhhhhh-hhccCc---------------
Q 007159          492 LSITAVRKIMQSIGFLGPA-FFLTQLSHV--RTPAMAVLCMACSQGSDAFSQSGLYSN-HQDIGP---------------  552 (615)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------  552 (615)
                      +.....      +...+.. .........  .........++..+...++.....+.. .+..++               
T Consensus       318 vl~~~~------i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~  391 (462)
T PRK15034        318 VTLINF------IFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ  391 (462)
T ss_pred             HHHHHH------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence            554322      1111111 111111111  122333333333223333333333322 222221               


Q ss_pred             ------chhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007159          553 ------RYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATGE  611 (615)
Q Consensus       553 ------~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~~l~~~~~~~~~  611 (615)
                            ++.|.+.|+...++.+|+++.|.+.|...+. +++...|+...+.++++.++.++...++
T Consensus       392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                  2688999999999999999999999998887 6799999999999988887766654443

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=3.4e-30  Score=274.43  Aligned_cols=382  Identities=13%  Similarity=0.105  Sum_probs=271.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      .+....++.++...........++.+.+++|.+..+.|++.+.+.+++.++.++.|++.||+|||+++..+.++.+++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            33444444444444444455566777789999999999999999999999999999999999999999999999988876


Q ss_pred             HHHh-hh-ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHH-HHHhhhHhhhhcCCCchH
Q 007159          288 LTPV-AA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       288 l~~~-~~-~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~ig~~l~~~l~~~~gw~~  364 (615)
                      ++.. .. ..+++.+++.|++.|++.+...+...+.+.+++++++|++++|+...+.++|. ++||++++++.+.+||+.
T Consensus        94 ~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~  173 (402)
T TIGR00897        94 AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN  173 (402)
T ss_pred             HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH
Confidence            5432 11 12677788999999999988888888889999999999999999999999997 689999999998889766


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .+|.......+..++.....++.++++++.++++.           ......++.++++|.++...+..++.....+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       174 TLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKF-----------SELGKAATILFTNPNVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCcccccCCcch-----------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence            65544333332222222222222111110000000           0001235667889999888888888778888888


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh--ccccch
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL--SHVRTP  522 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~  522 (615)
                      ++.|.|+++ +|++..+.+.+.....++..++.++.|++.||+++|+....     ...+...+....+...  ...+..
T Consensus       243 ~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~-----~~~l~~~~~~~~l~~~~~~~~~~~  316 (402)
T TIGR00897       243 VFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRW-----FGGVGCGIFTLALYYIPQHFGHSF  316 (402)
T ss_pred             HHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHHHHccCCcH
Confidence            999999876 89999999998899999999999999999999998764321     1111111111111111  111222


Q ss_pred             H-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHH
Q 007159          523 A-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       523 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~  601 (615)
                      + ..+..++.+.+.... .+. .....+.+|+++|++.|+.+....+|..++|.+.|.+.|..|+..++++.+++.+++.
T Consensus       317 ~~~~~~~~~~G~~~~~~-~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       317 AVALIIAIALGIFLAGY-VPL-AAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHH-HHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            2 233333333333332 222 2334456788999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHh
Q 007159          602 LVWNLFA  608 (615)
Q Consensus       602 l~~~~~~  608 (615)
                      ++..+++
T Consensus       395 ~~~~~~~  401 (402)
T TIGR00897       395 FLTAFIR  401 (402)
T ss_pred             HHHHHhc
Confidence            7766553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=5.4e-30  Score=270.88  Aligned_cols=360  Identities=16%  Similarity=0.203  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      ..+.+..+....+...+.+..|.+.+++|.+..+++++.+++.++..+++++.|++.||+|||+++..+.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33333345556777788889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHH
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~  369 (615)
                      .+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.+..+|++.|++.
T Consensus        88 ~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        88 ALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             HHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            8887  78889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +++.++..++.....++.++++++.+.++.              ...++..++++.++...+...+.....+....+.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLPYEARIQISTY--------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF  231 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcccCCHHHH--------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence            877666655554444433322211111110              124566778888888777766666677777788899


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH-
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-  528 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  528 (615)
                      ++++.+|+++.+.+.+.....++.+++.++.|++.||+++++....+.  ....++.+...  .............+.. 
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGL--ILFAVSAVLLE--ITAILGLGSWAMIIGPM  307 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHH--HHHHhccchHHHHHHHH
Confidence            998889999999999999999999999999999999999886543221  11111111111  1111111122222222 


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVF  590 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f  590 (615)
                      .+.+.+.....+ .......+..|++++++.++.+.....++.+.+.+.|.+.+..++...+
T Consensus       308 ~~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~  368 (385)
T TIGR00710       308 MFVGIGNSMISS-IAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHH
Confidence            222232332333 3333333344678999999999888776666666777555544443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=3.1e-30  Score=276.99  Aligned_cols=375  Identities=14%  Similarity=0.139  Sum_probs=265.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      .+++.++.+++.++...++.....+..|.+.+++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34566777888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      ++.+++++++  +++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.++||
T Consensus        95 ~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         95 VGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            9999998888  78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHH---HHHHHH
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF---CHNWGT  440 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~~~  440 (615)
                      +.|++..+..++ .+ ++...  .+++.+.. +++.+...+............++.+++++.++.......   +.....
T Consensus       173 ~~f~i~~~~~~~-~~-~~~~~--~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T PRK12307        173 AAFFVGLLPVLL-VI-YIRAR--APESKEWE-EAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGAN  247 (426)
T ss_pred             HHHHHHHHHHHH-HH-HHHHH--CCCChHHH-HhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            999874433222 22 11111  11111100 000000000000000001124566777777654433222   222233


Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       441 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      +.+..++|.|+++ .|+++...+.+.+...++.++++++.|++.||+++|+....+.       ................
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  319 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGL-------LMSFLFIFPLFRIPQD  319 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHHHHHHHHHHHccc
Confidence            3466788999987 5999999999999999999999999999999999885433211       1111111111111112


Q ss_pred             chHHHHHHHHHHh--hhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHH
Q 007159          521 TPAMAVLCMACSQ--GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV  594 (615)
Q Consensus       521 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~  594 (615)
                      ... .+....++.  ...+..........+..|++.+|++.|+.+.+..+++.++|.+.|++.+..|+.....+..
T Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~  394 (426)
T PRK12307        320 NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV  394 (426)
T ss_pred             cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            222 111112221  1111111222334566778999999999999999999999999999999988765443333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2.4e-31  Score=279.86  Aligned_cols=370  Identities=19%  Similarity=0.220  Sum_probs=274.1

Q ss_pred             HHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhc
Q 007159          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR  294 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~  294 (615)
                      .++..+.+...+++..|.+.+++|++..++|++.+++.++..++.++.|+++||+|||++++++.++.+++.+++++++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            4566678888889999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHh-hhHhhhhcCCCchHHHHHHHHHH
Q 007159          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL-AVSPILIQKFGWPSVFYSFGSLG  373 (615)
Q Consensus       295 ~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~-~l~~~l~~~~gw~~~f~~~~~~~  373 (615)
                       +++.+++.|++.|++.+...+...+++.+++|+++|++++++...+..+|.+++| .+++.+.+..+|++.|++.+++.
T Consensus        82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             7888999999999999999999999999999999999999999999999999999 57777778889999999888776


Q ss_pred             HHHHHHHHhhhcCCCCCCccccHHHH-hhh----hcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          374 SIWFALWLKKAYSSPKEDPELRAEEK-RHI----LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      ++..++.+...++.+++.+....++. .+.    ......+.......++.+++++.++.+.+..++.......+..+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555554444433322111000000 000    0000000011122356677888899888888888888888899999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVL  527 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~  527 (615)
                      .|+++.+|++..+.+.......++.++++++.+++.||..+++.....    ...................... ...+.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA----VFFMALIIVSLLVYWLNPAANPLMDLIC  316 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence            999998999999999999999999999999999999987544322211    1111111111111111111122 22222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHH
Q 007159          528 CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVF  590 (615)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f  590 (615)
                      .+..+...............+..+++.||++.|+.+.+..+|..++|.+.|.+.|..||+..|
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            233332222222223334556678899999999999999999999999999999998887643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=5.4e-30  Score=272.64  Aligned_cols=370  Identities=15%  Similarity=0.142  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      +.+..+.+..++..++..+..+.+|. +.+++|.|..++|++.+++.+++.+++++.|+++||+|||++++.+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34455566667777788888888887 56889999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHhhh---c---cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC
Q 007159          286 TVLTPVAA---R---IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (615)
Q Consensus       286 ~~l~~~~~---~---~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~  359 (615)
                      .+++.++.   +   .+++.+++.|+++|++.+...+....++.+++++++|++++++...+..+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            66554432   1   13557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHH
Q 007159          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG  439 (615)
Q Consensus       360 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  439 (615)
                      +||++.+++..++.++..++. ...++.+++ ++ ++                  .++++.++  .++.......+..+.
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~------------------~~~~~~~~--~~~~~~~~~~~~~~~  231 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLA-RPRPAVPPV-KG-ER------------------LPFRRVLG--RVWPYGMGLALASIG  231 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-hcCCCCCCC-Cc-cc------------------hhHHHHHH--HHHHHHHHHHHHHHH
Confidence            999999887665544333222 211111110 00 00                  01222222  122222223333445


Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      ......++|.|+.+ .|++  ..+.......++.++++++.|++.||+++++.....       ..+.......... ..
T Consensus       232 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-------~~~~~~~~~~~~~-~~  300 (399)
T PRK05122        232 FGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVS-------LLVEILGLLLLWL-AP  300 (399)
T ss_pred             HHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHHHHHHHH-hc
Confidence            56667788888876 4653  456666778888899999999999999987543211       1111111111111 12


Q ss_pred             cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          520 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      +.....+..++.+.+.....+.......+..+++++|++.|+++....+|..++|++.|++.+..||+..|++.++++++
T Consensus       301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  380 (399)
T PRK05122        301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALL  380 (399)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            22233333334444443333333344556678899999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhcC
Q 007159          600 GTLVWNLFATG  610 (615)
Q Consensus       600 ~~l~~~~~~~~  610 (615)
                      +.++...++++
T Consensus       381 ~~~~~~~~~~~  391 (399)
T PRK05122        381 GLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHhccc
Confidence            87776655443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.9e-29  Score=275.46  Aligned_cols=389  Identities=15%  Similarity=0.140  Sum_probs=258.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchh-hHH-----HHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT-VGL-----IQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGV  279 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~-~g~-----i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~  279 (615)
                      +++++.+.++.++.+++...++...|.+.++++.+... .++     +.++..+++.++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45666777888889999999999999999998644322 122     257888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccChH--------HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhh
Q 007159          280 IWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (615)
Q Consensus       280 ~l~~i~~~l~~~~~~~~~~--------~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~  351 (615)
                      ++++++.+++++++  ++.        .++++|+++|++.|..++...+++.|++|+++|+++.++...+..+|.++|+.
T Consensus        95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998  554        38899999999999999999999999999999999999999888888888886


Q ss_pred             hHhhhh--------cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhh
Q 007159          352 VSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK  423 (615)
Q Consensus       352 l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (615)
                      +...+.        ..+|||+.|++.+++.++. +++....+++|.....   .+..+... .......+..+++.++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQH---VDKLEQGD-REGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHH---HHhhhhhc-cccccccccCCHHHHHHH
Confidence            665443        2589999999866544432 2222223332221000   00000000 000000112245555543


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Q 007159          424 -APVWA-LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIM  501 (615)
Q Consensus       424 -~~~~~-~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~  501 (615)
                       ++.+. .....++....++.+..|+|.|+++.+|++....++......++..++.++.|+++||+|+|+.+..+.    
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~----  323 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGS----  323 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH----
Confidence             22222 222334455667788889999998888999888888888888889999999999999999986433221    


Q ss_pred             HHHHHHHHHHHHHHhccccchHHHH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhe
Q 007159          502 QSIGFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI  580 (615)
Q Consensus       502 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l  580 (615)
                        +.+.+....++..........++ ..++.+.+.............+..|++.||++.|+.+.+..+++.++|.+.|++
T Consensus       324 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l  401 (490)
T PRK10642        324 --VALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWL  401 (490)
T ss_pred             --HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111111111111122222222 222222221111112222334467889999999986666778889999999999


Q ss_pred             eccC-ChhHHHHHHHHHHHHHHHHHHHH
Q 007159          581 LQRG-SWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       581 ~~~~-g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .+.. ++...+++..+.++++.+..++.
T Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        402 VESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            8764 45555555555555555555444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.1e-29  Score=268.70  Aligned_cols=363  Identities=15%  Similarity=0.097  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      .+..+++..++.........+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566677778888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      ++++++  +++.+++.|++.|++.+...+...+.+.+..++++|+++++++..+..+|..+||.+++.+.+...|... +
T Consensus        87 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~  163 (381)
T PRK03633         87 GLGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-W  163 (381)
T ss_pred             HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-H
Confidence            888887  7888999999999999999898888888888899999999999999999999999999998775433333 2


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM  447 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  447 (615)
                      ..+.+......++.. ..+ +++.++ +                 +..++++.++++.++......+...........++
T Consensus       164 ~~~~~~~~~~~~~~~-~~~-~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (381)
T PRK03633        164 VTGLVLAAILPLLFT-RIL-NQQAEN-H-----------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLM  223 (381)
T ss_pred             HHHHHHHHHHHHHHh-ccc-CCCCCC-C-----------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222212211 111 111100 0                 00134456777777655544444445556667789


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Q 007159          448 PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL  527 (615)
Q Consensus       448 p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  527 (615)
                      |.|+++ .|.+....+.+.+...++.++++++.|++.||+++++....+.  ....++     .... .  . .......
T Consensus       224 p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~--~~~~~~-----~~~~-~--~-~~~~~~~  291 (381)
T PRK03633        224 PLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQV--FVVILG-----SIAM-L--S-QAAMAPA  291 (381)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHH--HHHHHH-----HHHH-h--h-hHHHHHH
Confidence            999987 6999999999999999999999999999999999886433221  111111     1111 1  1 1111222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHH
Q 007159          528 CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      ..+.+.+.....+.......+..++++++.+.+..+...++|..+||.+.|++.|..++...|.+.+++.++..+..+
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            222333333334444444556667777788888888889999999999999999999999999988888776654443

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=9.2e-30  Score=268.21  Aligned_cols=365  Identities=15%  Similarity=0.113  Sum_probs=263.0

Q ss_pred             HHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHH-HHHHHHHHHHHHHhh
Q 007159          215 AFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF-GVIWWSVATVLTPVA  292 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~-~~~l~~i~~~l~~~~  292 (615)
                      .+++..+......+.+|. +.+++|.|..++|++.+++.+...+.+++.|+++||+|||+.++. +.++..++.++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            455666777777788887 467899999999999999999999999999999999999887554 556666667777777


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhH--HHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS--LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~  370 (615)
                      +  +++.+++.|++.|.+.+...|...++..++.++++|++.  .++...+.++|.++||.+++++.+.+|||+.|++.+
T Consensus        85 ~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        85 R--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             c--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            7  778888899999988888888888999998877766654  678888889999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          371 SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY  450 (615)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~  450 (615)
                      ++.++..++.++..++.++++++...                 ..+.+..+++++++.+.+..++..........++|.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGALT-----------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLL  225 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccccC-----------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            77666655554444443322111000                 0122335566666666555555555455566788999


Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q 007159          451 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMA  530 (615)
Q Consensus       451 ~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  530 (615)
                      +++.+|.++.+.+.+.....+...++.++.|++.||+++|+......     ...    ..........+..+..+....
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~  296 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA-----LAG----VAFYTGLAADNSLWALLMLQL  296 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH-----HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            98889999999998888777778888899999999999886543211     111    111111111122222222222


Q ss_pred             HHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      +.+...+...+......++..|++++++.++.+...++|..++|.+.|.+.+..||+..|++.+++.+++.++..+.
T Consensus       297 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       297 LNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            22222223333333444555677788999999999999999999999999999999999999998888877766544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-30  Score=262.75  Aligned_cols=383  Identities=17%  Similarity=0.219  Sum_probs=311.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ..++.+.+..+...+.++..+++++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..
T Consensus        11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~   90 (417)
T COG2223          11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL   90 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence            34667778888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc-ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-
Q 007159          284 VATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (615)
Q Consensus       284 i~~~l~~~~~~~-~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-  361 (615)
                      +..+..+++.+. +++.+++++++.|++.+ .+...+..++.+||++++|.++|+.. ..++|..+...+++.++...| 
T Consensus        91 IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~  168 (417)
T COG2223          91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF  168 (417)
T ss_pred             HHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence            999988887732 34689999999999954 56888999999999999999999999 899999999999999999888 


Q ss_pred             --chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHH
Q 007159          362 --WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG  439 (615)
Q Consensus       362 --w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  439 (615)
                        |+.+..+..+..++..+..++...+.++..+..++...               ..++.+++++..|.+.+.++..+.+
T Consensus       169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------~~~~~v~~~~~~W~lsllY~~tFG~  233 (417)
T COG2223         169 LAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------AQLKAVFSNKDTWLLSLLYFATFGG  233 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------hHHHHHhcCcchHHHHHHHHHHHHH
Confidence              99988888877777777777666665543221111110               1456678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH-  518 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  518 (615)
                      +.++..++|.|+++++|.+...+|.+.....+.+.+.++++|+++||+|.+|......      ..+.+. ...+.... 
T Consensus       234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f------~~~~~~-~~~l~~~~~  306 (417)
T COG2223         234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVF------VGMALA-AALLSLFLT  306 (417)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHH------HHHHHH-HHHHHcccc
Confidence            9999999999999999999999999999999999999999999999999987544221      111111 11111111 


Q ss_pred             ----ccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC-hhHHHHHH
Q 007159          519 ----VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVA  593 (615)
Q Consensus       519 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g-~~~~f~~~  593 (615)
                          .......+..++......+......+.....+.+++.|.+.|+...++.+|++.-|...|...+..| +...|++.
T Consensus       307 ~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~  386 (417)
T COG2223         307 GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLL  386 (417)
T ss_pred             ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHH
Confidence                1334444454555555556666666777777778899999999999999999999999999999855 99999999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 007159          594 VVLYIIGTLVWNLFATG  610 (615)
Q Consensus       594 ~~~~l~~~l~~~~~~~~  610 (615)
                      ..+.+++.+.....+.+
T Consensus       387 ~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         387 LAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999988866655444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=6.1e-30  Score=276.42  Aligned_cols=387  Identities=13%  Similarity=0.156  Sum_probs=279.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      +|.++..+++...........++...|.+.+++|++..+++++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            47777777777666656666678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHH-HHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          285 ATVLTPVAARIGLPFLLI-MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      +.+++++++  +++.+++ .|++.|++.+...+...+++.++++ ++|++++++...+..+|..++|.+++.+.+.+|||
T Consensus        97 ~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr  173 (455)
T TIGR00892        97 GMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR  173 (455)
T ss_pred             HHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence            999888887  6666654 5789999998877788888899995 78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCc-cccHHHHhhhhcCCc-------cccccccccHHHHhhhhhHHHHHHHHHH
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEEKRHILGGSI-------SKEAVSVIPWKLILSKAPVWALIISHFC  435 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~l~~~~  435 (615)
                      +.|++.+++.++..+..+...+.++.+.. ..+.++.........       .++..+..++ .++++|.++...+..++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  252 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVI  252 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHHHHH
Confidence            99999888776554443333322211000 000000000000000       0000011122 36788888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHHHHHHHHHHH
Q 007159          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV--SKGLSITAVRKIMQSIGFLGPAFFL  513 (615)
Q Consensus       436 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~l  513 (615)
                      ...+.+...+++|.|+++ +|++..+.+++.++.+++.++++++.|++.||..  +++..       ....+.+..++.+
T Consensus       253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-------~~~~~~~~~~l~~  324 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQY-------LFSFALLFNGLTH  324 (455)
T ss_pred             HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHH-------HHHHHHHHHHHHH
Confidence            777777888899999977 7999999999999999999999999999999742  22111       1111111111111


Q ss_pred             HHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccC-ChhHHHH
Q 007159          514 TQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFK  591 (615)
Q Consensus       514 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~-g~~~~f~  591 (615)
                      +.....+..+ +.+..++.+.+.....+.......+..++++++++.|+++.+..+|.++||.++|.+.+.. +|+..|+
T Consensus       325 ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~  404 (455)
T TIGR00892       325 LLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY  404 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence            1111222333 3333444444433333443444556678899999999999999999999999999999975 6999999


Q ss_pred             HHHHHHHHHHHH
Q 007159          592 VAVVLYIIGTLV  603 (615)
Q Consensus       592 ~~~~~~l~~~l~  603 (615)
                      +.+++.+++.+.
T Consensus       405 ~~~~~~li~~~~  416 (455)
T TIGR00892       405 ASGSIVVSAGLF  416 (455)
T ss_pred             HhhHHHHHHHHH
Confidence            888877766553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.8e-30  Score=281.92  Aligned_cols=402  Identities=16%  Similarity=0.163  Sum_probs=267.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCC--------chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN--------STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s--------~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~  277 (615)
                      +...+++.+..+...++...+.+..+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33444444455666677788888888888888777        8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhH---
Q 007159          278 GVIWWSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS---  353 (615)
Q Consensus       278 ~~~l~~i~~~l~~~~~-~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~---  353 (615)
                      +.++..++.+++.+.. ..+++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++++++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988886544 224557999999999999999999999999999999999999999999999999999999   


Q ss_pred             hhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCccccHHHHhhhhcCCccccc-----------------
Q 007159          354 PILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK-----EDPELRAEEKRHILGGSISKEA-----------------  411 (615)
Q Consensus       354 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------------  411 (615)
                      +.+.+..+||+.|++.++..++..+..+. .++.+.     ++.+...+......+.......                 
T Consensus       187 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFF-LPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            77667789999999865554444333333 333221     0100000000000000000000                 


Q ss_pred             cccccHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          412 VSVIPWKLILS------KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD  485 (615)
Q Consensus       412 ~~~~~~~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~d  485 (615)
                      .....++.+++      .+.++...+..+...........+.|.++++ +|++....+.......++.+++.++.|++.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  344 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD  344 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001122222      2222222333333223334445566666655 7999988889888999999999999999999


Q ss_pred             HhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHhhhhhhhhhhhhh-hhhccCcchhhHHHH
Q 007159          486 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV----RTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLG  560 (615)
Q Consensus       486 r~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g  560 (615)
                      |+++|+....+.  ....++++...+........    ..........+...+......+.... ..+..+++.|+++.|
T Consensus       345 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  422 (481)
T TIGR00879       345 RFGRRPLLLIGA--AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS  422 (481)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence            999886544321  11111111111100111110    02222222222222222222232333 355567789999999


Q ss_pred             HHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007159          561 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE  611 (615)
Q Consensus       561 l~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~~  611 (615)
                      +.+...++|.+++|.+.|.+.+..+|...|++.+++++++.++..++.++.
T Consensus       423 ~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            999999999999999999999998999999999888888777766554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=2.3e-29  Score=273.91  Aligned_cols=371  Identities=13%  Similarity=0.151  Sum_probs=273.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      .+.++++..++..++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34455566777778888888999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      ++.+++  +++.+++.|+++|++.+...+...+++.+++|+++|++++++......+|..+||.+++.+.+..|||+.|+
T Consensus        91 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            888876  788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccHHHHh-----------hhhcCC--------------------------cccc
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----------HILGGS--------------------------ISKE  410 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--------------------------~~~~  410 (615)
                      +...+..+..++.....++.+.+..+.+.....           ...+..                          ....
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            877666555554444433322221111100000           000000                          0000


Q ss_pred             ccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007159          411 AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK  490 (615)
Q Consensus       411 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~  490 (615)
                      .....+. ++++++.++......++..........+.|.|++..+|.++...++......++..++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1111233 367888888888878877777777777889999888899999999999888888888989999999999988


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 007159          491 GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM-AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA  569 (615)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg  569 (615)
                      +....+.      ....+....+.........+. .+..++.+.+.............+..+++.+|.+.|+.++...+|
T Consensus       328 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  401 (471)
T PRK10504        328 RVLVATT------LGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLS  401 (471)
T ss_pred             HHHHHHH------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHH
Confidence            6543221      111111111111111222222 222223333333333333444556678899999999999999999


Q ss_pred             HHHHHHHhhheeccCChh
Q 007159          570 GVFGTAATGYILQRGSWD  587 (615)
Q Consensus       570 ~~igp~l~G~l~~~~g~~  587 (615)
                      ..+|+.+.|.+.+..++.
T Consensus       402 ~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        402 MSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999998876664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.98  E-value=3.9e-29  Score=266.69  Aligned_cols=374  Identities=17%  Similarity=0.155  Sum_probs=266.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchh-----hHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT-----VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~-----~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      ..+++..++..+......+.+|.+.+++|++..+     .|++.+++.++..++.+++|+++||+|||++++.+.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3444555666677777888999999999988654     48999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.+++.+.+  +++.+++.|++.|++.+ ..+....++.+++++++|++++++...+..+|.+++|.+++.+.+..+|++
T Consensus        97 ~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874         97 VMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            888888777  78889999999999865 467788889999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHH-HHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWAL-IISHFCHNWGTFIL  443 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~~  443 (615)
                      .|++.+++.++..++.....++++++.++.+..+.+               +....+++++++.. ....++........
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMR---------------EVVTSLKNPKLVLSLFVTTLIIQVATGSI  238 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHH---------------HHHHhCcCCchHHHHHHHHHHHHHHHHHH
Confidence            999888776665555444444332211111110000               12223455555443 33333344445556


Q ss_pred             HHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          444 LTWMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       444 ~~~~p~~~~~~~g~s~~---~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      ..++|.|..+..+....   ..+.+..+.+++..++.+..|++.||+++++......       ....  +........+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~-------~~~~--~~~~~~~~~~  309 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITAL-------IFSV--LLLIPMSFVQ  309 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH-------HHHH--HHHHHHHHhc
Confidence            67788888775442221   2455566677888888999999999999886543221       1111  1111111112


Q ss_pred             chHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          521 TPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       521 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      ..+.. +..++.+.+.....+..........+++++|+..++.+.+..+|..+||.++|.+.+..||+..|++.+++.++
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~  389 (408)
T PRK09874        310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLF  389 (408)
T ss_pred             cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            23333 33333344333333333334445567788999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhcC
Q 007159          600 GTLVWNLFATG  610 (615)
Q Consensus       600 ~~l~~~~~~~~  610 (615)
                      +.++.....++
T Consensus       390 ~~~~~~~~~~~  400 (408)
T PRK09874        390 NAVYSWNSLRR  400 (408)
T ss_pred             HHHHHHHHHHH
Confidence            87766554433

>PRK12382 putative transporter; Provisional

Probab=99.98  E-value=3.6e-29  Score=265.71  Aligned_cols=366  Identities=15%  Similarity=0.178  Sum_probs=253.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      ..+.+..++.........+.+|. +.+++|.|..++|++.+++.+++.++++++|+++||+|||++++.+.++..++.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA   97 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            33444455555666677777876 56899999999999999999999999999999999999999999998877765543


Q ss_pred             HH---hhh---ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          289 TP---VAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       289 ~~---~~~---~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      +.   +.+   ..+++.+++.|+++|++.+...+...+++.+++|+++|++++++...+..+|.++||++++++.+.+||
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (392)
T PRK12382         98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF  177 (392)
T ss_pred             HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            22   111   125778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      ++.+++..++.++.... ....++.+++++. +                   .+.++..+  .++...+..++.......
T Consensus       178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-------------------~~~~~~~~--~~~~~~~~~~l~~~~~~~  234 (392)
T PRK12382        178 AALALTTMVLPLLAWAF-NGTVRKVPAHAGE-R-------------------PSLWSVVG--LIWKPGLGLALQGVGFAV  234 (392)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccCCCCCccc-C-------------------chHHHHHH--HHHHhHHHHHHHHHHHhH
Confidence            98877554443332222 1211211111000 0                   01111111  122222222333445556


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      ...+.|.|+++ .|++.  .+.......++.++++++.|++.||+++++....+.  ....+     ...+... ..+..
T Consensus       235 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~--~~~~~-----~~~~~~~-~~~~~  303 (392)
T PRK12382        235 IGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSL--LVETV-----GLLLLWL-APTAW  303 (392)
T ss_pred             HHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHH--HHHHH-----HHHHHHH-cccHH
Confidence            67788888876 46653  456666777788899999999999999987654321  11111     1111111 12222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          523 AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      ...+...+.+.+.....+.......+..+++++|++.|+.+....+|..++|.+.|++.|..||+..|.+.+++.+++.+
T Consensus       304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            22233333333333333333344566678899999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHhc
Q 007159          603 VWNLFAT  609 (615)
Q Consensus       603 ~~~~~~~  609 (615)
                      +.+...|
T Consensus       384 ~~~~~~~  390 (392)
T PRK12382        384 VTILSFR  390 (392)
T ss_pred             HHHhhcc
Confidence            7665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.98  E-value=1.8e-29  Score=264.35  Aligned_cols=355  Identities=15%  Similarity=0.126  Sum_probs=265.5

Q ss_pred             HHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh
Q 007159          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~  292 (615)
                      +...++..++.....+.+|.+..+++.+..++|++.+++.++..++++++|+++||+|||++++.+.++..++.++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777778888899999999999999999999999999999999999999999999999999888887776665


Q ss_pred             hc---cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHH
Q 007159          293 AR---IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (615)
Q Consensus       293 ~~---~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~  369 (615)
                      ..   .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++++.+..||++.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            41   257889999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHhhhcCCCCC-CccccH-HHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HH
Q 007159          370 GSLGSIWFALWLKKAYSSPKE-DPELRA-EEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL-TW  446 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~  446 (615)
                      ++..++..++......+++++ +++..+ +..++           ....++.++++|.++...+..++......... .+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAASEIQALSNAVLRD-----------TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL  233 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCCccccccchhHHHH-----------HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766555444433322221111 111100 00000           01245667888888888777777776666666 78


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Q 007159          447 MPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV  526 (615)
Q Consensus       447 ~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  526 (615)
                      .|.|.++.+|.+..+.+.+.....++..++.++.+++.||+++++....+       ................+.....+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  306 (365)
T TIGR00900       234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGA-------IFVIGLAILVVGLTPPNFPLFLV  306 (365)
T ss_pred             hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH-------HHHHHHHHHHHHhhchhHHHHHH
Confidence            89999888899999999999999999999999999999999887533211       11111111111111111222233


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC
Q 007159          527 LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS  585 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g  585 (615)
                      ..++.+.+.....+.......+..++++||++.|+.+....++..++|.+.|++.|..|
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       307 LWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344444333334444455666788999999999999999999999999999988643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.98  E-value=8.5e-29  Score=264.22  Aligned_cols=366  Identities=12%  Similarity=0.057  Sum_probs=264.4

Q ss_pred             HHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh
Q 007159          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~  292 (615)
                      .+..+...+....+.+.+|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            44445666777888899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~  372 (615)
                      +  +++.++++|+++|++.+...+...+++.|+++++++++++++...+..+|..+||++++.+.++.|||+.|++.+++
T Consensus       102 ~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~  179 (413)
T PRK15403        102 T--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM  179 (413)
T ss_pred             C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            7  88889999999999998777777888999999999999999999999999999999999999889999999998887


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (615)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  452 (615)
                      .++..++.+...++.++++++.....             ....+++.++++|.+|...+..++.....+.+..+.|.+++
T Consensus       180 ~~i~~~~~~~~lp~~~~~~~~~~~~~-------------~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~  246 (413)
T PRK15403        180 GLIAFVGLLLAMPETVKRGAVPFSAK-------------SVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILI  246 (413)
T ss_pred             HHHHHHHHHHhCCCCccccCCCCChH-------------HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            76665544443343322111100000             01125677889999999888877777777788888899999


Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHH
Q 007159          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMAC  531 (615)
Q Consensus       453 ~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~  531 (615)
                      +.+|+++.+.++.......+..++..+.+++.++..+++......  ....++.+........  ..+.+. ..+..++.
T Consensus       247 ~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~--~~~~ig~~l~~~~~~~--~~~~~~~~~~~~~l~  322 (413)
T PRK15403        247 DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV--PIQLVGLALLIVGNLL--WPHVWLWSVLGTSLY  322 (413)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH--HHHHHHHHHHHHHHHH--ccccHHHHHHHHHHH
Confidence            989999999999888888888888777777665444333221111  1112222222111111  122222 22222333


Q ss_pred             HhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          532 SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      +.+.....+. ............+|++.++.+.....+..+++.+.|++.+.. -...|...++++.+
T Consensus       323 ~~G~~~~~p~-~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  388 (413)
T PRK15403        323 AFGIGLIFPT-LFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG-GRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHhHH-HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHH
Confidence            3333333222 222121222334799999999999999999999999998764 35555444444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.98  E-value=1.7e-29  Score=270.53  Aligned_cols=368  Identities=16%  Similarity=0.107  Sum_probs=263.9

Q ss_pred             HHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh---h
Q 007159          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---A  292 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~---~  292 (615)
                      .++..+......+.+|.+.++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++   .
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            4445556667788889999999999999999999999999999999999999999999999988887777665442   1


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~  372 (615)
                      ...+++.+++.|++.|++.+...++..+++.++.|+++|+++.++......+|..+||.+++.+.+..+|+|.|++.++.
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            22367788899999999999888999999999999999999999999999999999999999999888999999887766


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (615)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  452 (615)
                      .++..++.+.. ++.++++++.... .+           .....++.++++|.++...+..++... ......++|.|++
T Consensus       186 ~~~~~~~~~~l-~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~  251 (417)
T PRK10489        186 TFITLLPLLRL-PALPPPPQPREHP-LR-----------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALAD  251 (417)
T ss_pred             HHHHHHHHHhC-CCCCCCCcccccc-hH-----------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHH
Confidence            65554444333 2222111110000 00           001134556777776665555444332 4566778999999


Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 007159          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS  532 (615)
Q Consensus       453 ~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  532 (615)
                      +.+|.+....+++.+...++.+++.++.+++.||.++++.+..         +.++.++.+..+...+.......+.++.
T Consensus       252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLL---------STLGSFLAVGLFGLMPMWILAVLCLALF  322 (417)
T ss_pred             hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH---------HHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            8889999999999999999999999999999998655432221         1111111111122223333333333222


Q ss_pred             hhhhhhhhhhhhh-hhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHH
Q 007159          533 QGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       533 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      +...+...+.... ..+..+++.||++.|+.+....+|..+||.+.|++.+..|+...+...+++.++..++...
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            2333333333333 4455677889999999999999999999999999999989888888777665554444433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.98  E-value=5.1e-29  Score=268.01  Aligned_cols=360  Identities=14%  Similarity=0.140  Sum_probs=244.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHH-HHHHH-----HHHHHHHHhhHHhhhhcCCchHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLI-QSSFF-----WGYLLTQIVGGIWADKFGGKPVLGFG  278 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i-~s~~~-----l~~~l~~~~~G~l~Dr~Grk~~l~~~  278 (615)
                      |++....++++.++.+++...+++..|.+.++++.+..+.+.+ .+...     +...+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4567888888999999999999999999999999988776543 33222     22246789999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccChH--------HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHh
Q 007159          279 VIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL  350 (615)
Q Consensus       279 ~~l~~i~~~l~~~~~~~~~~--------~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~  350 (615)
                      .+++.++.+++++++  +++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++
T Consensus        93 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999988  544        4688999999999999999999999999999999999999988888888888


Q ss_pred             hhHhhhh--------cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhh
Q 007159          351 AVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILS  422 (615)
Q Consensus       351 ~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  422 (615)
                      .+++.+.        +.+|||+.|++..+.. +.. ++.  ....+ +.++...++.+          ......++...+
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~-~~~--~~~~~-e~~~~~~~~~~----------~~~~~~~~~~~~  235 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFI-FLI--RRSLE-ETEEFLARKHR----------PSMREIFRSLAA  235 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHH-HHH--HHhcC-CCHHHHHhhhc----------cccccHHHHHHH
Confidence            8777652        4689999998644332 111 111  11111 11110000000          000112333445


Q ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Q 007159          423 KAPVWALI-ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIM  501 (615)
Q Consensus       423 ~~~~~~~~-l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~  501 (615)
                      +++.+... +..++.....+....|.|.|+++.+|++..+.++...+..++.+++.++.|++.||+++|+......    
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~----  311 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT----  311 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH----
Confidence            55544432 3333445556677889999999888999999998888888999999999999999999886543211    


Q ss_pred             HHHHHHHHHHHHHHhccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHH-HHHHHHHHHhhh
Q 007159          502 QSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGV-LAGVFGTAATGY  579 (615)
Q Consensus       502 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~-lg~~igp~l~G~  579 (615)
                       ..........+............ ....+.+.+.............+..|++.|+++.|+.+.+.. +++.++|.+.|+
T Consensus       312 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        312 -VLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             -HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence             11111110011111112222112 112222222222222223345566788999999999655554 468889999999


Q ss_pred             eeccCCh
Q 007159          580 ILQRGSW  586 (615)
Q Consensus       580 l~~~~g~  586 (615)
                      +.|..|+
T Consensus       391 i~~~~g~  397 (434)
T PRK15075        391 LIHVTGD  397 (434)
T ss_pred             HHHhcCC
Confidence            9998775

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.98  E-value=1.1e-29  Score=277.24  Aligned_cols=366  Identities=16%  Similarity=0.217  Sum_probs=278.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      ++..+++..++..++.....+.+|.+.+++|.+..+++++.+.+.++..++.++.|+++||+|||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45566677788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      ++++++  +++.+++.|+++|++.+...+...+++.+++|+++|+++++++..+..+|..+||.+++++.++++||+.|+
T Consensus        83 ~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999887  888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCcc-ccHHHH------------hhhhcCCcc--------------------------
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKEDPE-LRAEEK------------RHILGGSIS--------------------------  408 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~--------------------------  408 (615)
                      +.+.+.++..++.....++++++..+ .+....            ....+....                          
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88777665555444443332221111 110000            000000000                          


Q ss_pred             ccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007159          409 KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (615)
Q Consensus       409 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g  488 (615)
                      +......+ .++++++.++...+..++..+..+....++|.|+++.+|+++.+.++......++..++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            00001112 24667888888888888888888888899999999999999999999999999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHH--hccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHH
Q 007159          489 SKGLSITAVRKIMQSIGFLGPAFFLTQ--LSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTA  565 (615)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~  565 (615)
                      +|+....+       ..+...+..+..  ........ ......+.+.+......+......+..+++++|++.|+.+..
T Consensus       320 ~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  392 (485)
T TIGR00711       320 PRKLVTIG-------LILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT  392 (485)
T ss_pred             cHHHHHHH-------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence            88543211       111111111111  11112222 233333334444333444444556677889999999999999


Q ss_pred             HHHHHHHHHHHhhheecc
Q 007159          566 GVLAGVFGTAATGYILQR  583 (615)
Q Consensus       566 ~~lg~~igp~l~G~l~~~  583 (615)
                      ..+|+.+|+.+.|.+.+.
T Consensus       393 ~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       393 RQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998864

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.98  E-value=1.1e-28  Score=265.58  Aligned_cols=387  Identities=17%  Similarity=0.183  Sum_probs=261.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHH-HHhhc--CCCchhhHHHH-----HHHHHHHHHHHHhhHHhhhhcCCchHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEF--NWNSTTVGLIQ-----SSFFWGYLLTQIVGGIWADKFGGKPVL  275 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--g~s~~~~g~i~-----s~~~l~~~l~~~~~G~l~Dr~Grk~~l  275 (615)
                      ++++.+...++..++.+++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            44567778888888899999998887775 45555  67666 45543     345566778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccChH--------HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 007159          276 GFGVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSV  347 (615)
Q Consensus       276 ~~~~~l~~i~~~l~~~~~~~~~~--------~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~  347 (615)
                      .++.++++++.+++++++  ++.        .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         98 MLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999998  544        5888999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHhhhh--------cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHH
Q 007159          348 TGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKL  419 (615)
Q Consensus       348 ig~~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (615)
                      +++.+...+.        ..+|||+.|++.++..++. +......++.+    +..+...+.  +..  ++  +....+.
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~----~~~~~~~~~--~~~--~~--~~~~~~~  244 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA----EFEQQQHEQ--AAA--KK--RIPVIEA  244 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh----hHHHHHhhc--ccc--cc--cCCHHHH
Confidence            9887776654        3579999998776654332 21111111111    110000000  000  00  0112233


Q ss_pred             HhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 007159          420 ILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVR  498 (615)
Q Consensus       420 l~~~~~~~~~~l-~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~  498 (615)
                      ++++++.+...+ ..++..+..+...+|.|.|+++.+|++......+..+.++...++.++.|+++||+++|+....+. 
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~-  323 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGA-  323 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH-
Confidence            556666665543 344555667778889999998888998876655555667777888899999999999986543221 


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhh-hhhhhhhhhhccCcchhhHHHHHHHHHH-HHHHHHHHHH
Q 007159          499 KIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF-SQSGLYSNHQDIGPRYAGVLLGLSNTAG-VLAGVFGTAA  576 (615)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~gl~~~~~-~lg~~igp~l  576 (615)
                          ....+............+.....+...++.+..... .........+..+++.|+++.|+.+.+. .+++.++|.+
T Consensus       324 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i  399 (438)
T PRK09952        324 ----LIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI  399 (438)
T ss_pred             ----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence                111111111111111122222322222322222222 2223333455577789999999866554 5899999999


Q ss_pred             hhheecc--CChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          577 TGYILQR--GSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       577 ~G~l~~~--~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      .|++.+.  .+|...+.+.+++.+++.+..+..++
T Consensus       400 ~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        400 AAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence            9999884  35888888888888887777665543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=2.9e-30  Score=269.14  Aligned_cols=347  Identities=25%  Similarity=0.414  Sum_probs=259.4

Q ss_pred             HHHHHHHhhhhhHHHHhHH-HHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          213 FSAFLLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~-~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      ++..++..++...+.+..| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||++++++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4556677778888888999 889999999999999999999999999999999999999999999999999999666666


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHH
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~  371 (615)
                      ++  +.+.+++.|++.|++.+...+...+++.+++|+++|++++++......+|.++||.+++++.+.++||+.|++.++
T Consensus        82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            55  6778999999999999999999999999999999999999999999999999999999999988999999999988


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCcccccccccc-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP-WKLILSKAPVWALIISHFCHNWGTFILLTWMPTY  450 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~  450 (615)
                      +.++..++.....++++++++..++.+..       .+.+....+ ++.+++++.+|.+.+..++..........++|.|
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence            88877664333332222221111111100       000011112 5667777777755566666666777888999999


Q ss_pred             HHHHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHH
Q 007159          451 YNQVLKFN-LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-RTPAMAVLC  528 (615)
Q Consensus       451 ~~~~~g~s-~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~  528 (615)
                      +.+.+|++ ..+.+.+..+..+...++.++.|++.||+++++...      ............+...... +..+..+..
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLL------IAILLLILGALGLLLLPFSSSPVWLIIAL  306 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            88889999 899999999999999999999999999998764322      1122222222222222222 223333344


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGT  574 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp  574 (615)
                      ++.+.+.....+.......+..+++++|++.|+.+...++|..+||
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4444444334444444556667779999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=3e-29  Score=274.78  Aligned_cols=388  Identities=15%  Similarity=0.177  Sum_probs=263.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ++|+.+..+++.+++..++.....+.+|.+.+++|++..+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45677778888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      ++.++..+++  +++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|.+++.+.+.++||
T Consensus        97 ~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         97 VGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999988887  78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHH-HHhhhhcCCccccccccccH----------HHHhh----------
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE-EKRHILGGSISKEAVSVIPW----------KLILS----------  422 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~l~~----------  422 (615)
                      +.|++..+..+ ..++.....++.++..++.+.. +.+...+....... .....          ...+.          
T Consensus       175 ~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
T PRK03893        175 ALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-RIINILLTLAAAAALWFCFAGNLQNAAIVA  252 (496)
T ss_pred             HHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            99986433322 2222222222211100000000 00000000000000 00000          00000          


Q ss_pred             --------------------h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007159          423 --------------------K-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG  481 (615)
Q Consensus       423 --------------------~-~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g  481 (615)
                                          + +....+.+..+...........++|.|+++.+|++..+.+.+.+...++.+++.++.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g  332 (496)
T PRK03893        253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG  332 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                0 0000000000111111113456889999877899999999999999999999999999


Q ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH-HHHHhhhhhhhhhhhhhhhhccCcchhhHHHH
Q 007159          482 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG  560 (615)
Q Consensus       482 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  560 (615)
                      ++.||+++++.....       ...................+..... +..+....+..........+..+++.+|+++|
T Consensus       333 ~l~dr~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  405 (496)
T PRK03893        333 FLGDWLGTRKAYVCS-------LLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLG  405 (496)
T ss_pred             HHHHHhcchHHHHHH-------HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccc
Confidence            999999988643321       1111111111111111222222222 22122222222222233455667789999999


Q ss_pred             HHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          561 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       561 l~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      +.+.+..+|..+||.+.|++.|..|+...+...++++.+..+
T Consensus       406 ~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~  447 (496)
T PRK03893        406 FTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVI  447 (496)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887665554444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=2.7e-28  Score=259.14  Aligned_cols=359  Identities=14%  Similarity=0.157  Sum_probs=263.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      .++.+.+..+..++..+....+.+.+|.+.+++|.|+.+++++.+++.+++.++++++|+++||+|||+++..+.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            35555555566666667777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.+++.+.+  +++.+++.|++.|++.+...+....+..+.++++++++++++...+..+|..+||.+++.+.+..|||+
T Consensus        86 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            998888877  788899999999999988888888899999988999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .|++.+++.++..++.....++.++++++  +.+.              ...++.+++++.++...+..+........+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADAR--RTRV--------------LASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccc--hhHH--------------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            99988776665544444433333222111  1110              1245667788887776666666555666666


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      .+.+.++++.+|++..+.+++.....++..++..+.+++.||.++..  ..    .......................+.
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~  301 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQ----SVICCLLAGLLMWIPGWFGVMNVWT  301 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHhccccHHH
Confidence            77888998889999999999988888888889999999999987321  10    1111111111111111111122222


Q ss_pred             HH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhH
Q 007159          525 AV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDD  588 (615)
Q Consensus       525 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~  588 (615)
                      .. ...+.+.+. +...+.......+..|+++|++.++.+....+|..+++.++|.+.+...+..
T Consensus       302 ~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~  365 (394)
T PRK11652        302 LLVPAALFFFGA-GMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence            22 223333333 3333434443444456788999999999999999999999999877644433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1e-28  Score=260.72  Aligned_cols=369  Identities=17%  Similarity=0.172  Sum_probs=261.7

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHH
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~l  300 (615)
                      +....+.+.+|.+.+++|++..+++++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+++  +++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHH
Confidence            3455667889999999999999999999999999999999999999999999999999999999999988887  78889


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~  380 (615)
                      ++.|++.|++.+...+...+++.+++++++|++++++......+|..++|.+++.+.+..+|++.|++.+++.++..++.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999998877776655554


Q ss_pred             HhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 007159          381 LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT  460 (615)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~  460 (615)
                      ....++.++++++.+.+.+            ....+++..++++.++...+..++...+...+..+.|.++.+.+|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  230 (377)
T PRK11102        163 FFFIPETLPKERRQPFHLR------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ  230 (377)
T ss_pred             HHhCCccCcccccCCCChH------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH
Confidence            4444333221111000000            0112455677888887777776666666777777888888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHhhhhhhh
Q 007159          461 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVLCMACSQGSDAFS  539 (615)
Q Consensus       461 ~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  539 (615)
                      +.+.+.....++.+++.++.+++.||+++|+....+..      ......+.+.... .....+..+.......+.....
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T PRK11102        231 NFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLW------IQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI  304 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999865442211      0011111111111 1112222222222222222222


Q ss_pred             hhhhhhhhhccCcchhhHHHHHHHHHH-HHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007159          540 QSGLYSNHQDIGPRYAGVLLGLSNTAG-VLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE  611 (615)
Q Consensus       540 ~~~~~~~~~~~~~~~~g~~~gl~~~~~-~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~~  611 (615)
                      .........+..|+.+|++.++.+... .+|..+++.+.+.. + .++...+...+++.+++.+++++..+++
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (377)
T PRK11102        305 SSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAP-F-TSAWPMVWSMAFCSILSILFYLYASRPK  375 (377)
T ss_pred             hHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhcc-C-CChHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            222233344455688999999987764 46667777665433 2 2333344444455455544444444433

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=3.7e-28  Score=258.77  Aligned_cols=349  Identities=15%  Similarity=0.153  Sum_probs=257.7

Q ss_pred             HHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcc
Q 007159          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~  295 (615)
                      .++..+....+.+.+|.+.+++|.++.+++++.+++.+++.++.+++|+++||+|||+++..+.++..++.+++.+++  
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--
Confidence            444556677788888999999999999999999999999999999999999999999999999999999988888887  


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +++.+++.|++.|++.+...+...+++.++++++++++.++.......+|..++|.+++++.+.+|||+.|++.+++.++
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL  172 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            78889999999999988888888899999999998999999998889999999999999999999999999988777766


Q ss_pred             HHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          376 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL  455 (615)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~  455 (615)
                      ..++.+...++++++ ++  +++               ..+++++++++.++...+...+.......+..+.|.++++ +
T Consensus       173 ~~~~~~~~~~~~~~~-~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~  233 (401)
T PRK11043        173 LILPTLRLKPSKKAR-KQ--SQD---------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-M  233 (401)
T ss_pred             HHHHHHHcCCCCCcc-cc--chH---------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-c
Confidence            655544433322211 10  000               1145667788887766665555555666677788998876 7


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHHHHhh
Q 007159          456 KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQG  534 (615)
Q Consensus       456 g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~  534 (615)
                      |++..+.++.+....++..++.++.+++.||+++++.....    .....+......+............ +...+.+.+
T Consensus       234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (401)
T PRK11043        234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWL----LVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAA  309 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99999999988888888899999999999999887643211    1111111111111111112222222 222333333


Q ss_pred             hhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHH
Q 007159          535 SDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVF  590 (615)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f  590 (615)
                      .....+. ......+..|+++|++.|+.++....++.+++.+.|.+.+.......+
T Consensus       310 ~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        310 NGAIYPI-VVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS  364 (401)
T ss_pred             HHHHHHH-HHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence            3333333 333333334678999999999999999999999999998865444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2.8e-28  Score=261.79  Aligned_cols=372  Identities=13%  Similarity=0.146  Sum_probs=264.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      +..+..+++.++...+......+..|.+.+++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            44455566666777788888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---hhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-C--
Q 007159          286 TVLTP---VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-K--  359 (615)
Q Consensus       286 ~~l~~---~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~--  359 (615)
                      .+++.   +++  +++.++++|+++|+|.+...+..+.++.++.+++++...+++.+....+|..+|+.+++.+.. .  
T Consensus       105 ~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~  182 (438)
T PRK10133        105 AALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            98753   444  788999999999999999999999999998777777778999999999999999999876541 0  


Q ss_pred             -----------------------CCchHHHHHHHHHHHHHHHHH-HhhhcCCCCCCccccHHHHhhhhcCCccccccccc
Q 007159          360 -----------------------FGWPSVFYSFGSLGSIWFALW-LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVI  415 (615)
Q Consensus       360 -----------------------~gw~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (615)
                                             .+||++|+....+..+..++. ....++.+.+ +. .++..           .....
T Consensus       183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~-~~-~~~~~-----------~~~~~  249 (438)
T PRK10133        183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-NH-SDAKQ-----------GSFSA  249 (438)
T ss_pred             ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-ccccc-----------cchhh
Confidence                                   245666654443333222222 2222221111 00 00000           00012


Q ss_pred             cHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccH
Q 007159          416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY-NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (615)
Q Consensus       416 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~-~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~  494 (615)
                      .+++++++|.++...+..++..........|++.|+ ++.+|+++.+.++.+....++.++++++.+++.||+++++...
T Consensus       250 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~  329 (438)
T PRK10133        250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA  329 (438)
T ss_pred             hHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            345678888888777777777777787888999885 5678999999999999999999999999999999999986543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 007159          495 TAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGT  574 (615)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp  574 (615)
                      ...     .++.  ..+.+.... .. ......+.+++.+.....+. ......+..+++.+.+.++.. ...+|+.++|
T Consensus       330 ~~~-----~~~~--~~~~~~~~~-~~-~~~~~~~~l~glg~~~i~P~-~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~  398 (438)
T PRK10133        330 AYA-----LIAM--ALCLISAFA-GG-HVGLIALTLCSAFMSIQYPT-IFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVT  398 (438)
T ss_pred             HHH-----HHHH--HHHHHHHHc-CC-hHHHHHHHHHHHHHHHHHHH-HHHHHHcccchhhccchhHHh-HHhccchHHH
Confidence            221     1111  111111111 12 22233333444444444444 444444444556788888876 4557899999


Q ss_pred             HHhhheeccCC-hhHHHHHHHHHHHHHHHH
Q 007159          575 AATGYILQRGS-WDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       575 ~l~G~l~~~~g-~~~~f~~~~~~~l~~~l~  603 (615)
                      ++.|.+.|..| .+..|++..++.+.....
T Consensus       399 ~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        399 PVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            99999999877 778887665555444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=5e-28  Score=256.93  Aligned_cols=269  Identities=16%  Similarity=0.197  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      +...++..+....+...+.+++|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            34445555566666667778999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHH
Q 007159          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (615)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~  368 (615)
                      +.+++  +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+....+|..++|.+++.+.+..+|++.|++
T Consensus        85 ~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~  162 (392)
T PRK10473         85 CSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT  162 (392)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence            88877  7788899999999999999999999999999999999999999999999999999999998888999999998


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      .+++.++..++.....+++++++++.....               ....++.++++.++...+...+.......+..+.|
T Consensus       163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (392)
T PRK10473        163 MAAMGILVLLLSLFILKETRPARAPAASSK---------------PRENSESLLNRFFLSRLVITTLSVTVILTFVNTSP  227 (392)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCccch---------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            887766665554444433322211100000               01234456777776655555544444555666778


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~  494 (615)
                      .++++.+|++..+.+.+.+...++.+++.++.+++.||+++|+...
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~  273 (392)
T PRK10473        228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML  273 (392)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            8888888999999999999999999999999999999999886443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=2.9e-28  Score=257.76  Aligned_cols=362  Identities=10%  Similarity=0.001  Sum_probs=262.2

Q ss_pred             HHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHH-HHHHHH-HHH
Q 007159          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVI-WWSVAT-VLT  289 (615)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~-l~~i~~-~l~  289 (615)
                      +.+.++..+.......|++|.+.+++|+|..++|++.+++.+...++++++|+++||+||+........ ...+.. .++
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            334455666667778899999999999999999999999999999999999999999998543322211 111111 223


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHH
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~  369 (615)
                      ..++  +++.+++.|+++|.+.+...|...++..++  +++|++++|......++|.++||++++++.+++|||+.|++.
T Consensus        89 ~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        89 AGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             Hhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3445  788899999999999988889988887654  578899999999999999999999999999999999999877


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +++..+..+ .....++.++++++. +++            .....++++++++|++|.+.+..++...+...+.++.|.
T Consensus       165 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       165 TAGLAFMLI-GFLIKPTIPPKDAIP-EDE------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             HHHHHHHHH-HHHcCCCCCCCcccc-ccc------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655333322 222222211111110 000            001124567889999999998888888888889999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH-HH
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV-LC  528 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~  528 (615)
                      |+++ +|.+....|.++....++.+++..+.+++.||++.++.+.         ++.+...+........+..+.++ ..
T Consensus       231 ~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       231 YWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLL---------ISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             HHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHH---------HHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            9987 8999999999999999999999999999999999885432         22223222222223344444333 44


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHH-HHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNT-AGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~-~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~  603 (615)
                      .+.+..+....+....... +.+++++++..++++. ...+|..++|.++|++.|+.|+ ..|.+++++.++++++
T Consensus       301 ~l~g~~~~~~~~~~~~~i~-~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIA-AQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            4444444444444433444 4477888999999874 5689999999999999999986 7788888877766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=1.3e-28  Score=260.97  Aligned_cols=366  Identities=21%  Similarity=0.303  Sum_probs=261.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      ++|+.+..+++..+....+.....+..|.+.+++|.+..+++++.+++.++..++.++.|+++||+|||+++..+.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   93 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS   93 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence            45666777777777777777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      ++.++..+++  +++.+++.+++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++++.+..||+
T Consensus        94 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~  171 (398)
T TIGR00895        94 VFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR  171 (398)
T ss_pred             HHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence            9988888887  78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHH----Hhhhh---c-C---Cc----cccccccccHHHHhh---hhh
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE----KRHIL---G-G---SI----SKEAVSVIPWKLILS---KAP  425 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~-~---~~----~~~~~~~~~~~~l~~---~~~  425 (615)
                      +.|++.+++..+..++.....++.++...+.+.++    .++..   . .   ..    .+.......++.+++   .+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI  251 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHH
Confidence            99998765555555444444443322110000000    00000   0 0   00    000000111222222   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 007159          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~  505 (615)
                      .+.+.+..++..........++| ++.+.+|++..+.+.......++.+++.++.+++.||+++++...     .....+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~  325 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-----LLLLGA  325 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-----HHHHHH
Confidence            34444445555566667777888 444558999999999999999999999999999999998872111     111111


Q ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhe
Q 007159          506 FLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI  580 (615)
Q Consensus       506 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l  580 (615)
                      .  ....+.. ...+.....+..++.+.+.....+.......+..++++||++.|+.+.+..+|..+||.+.|++
T Consensus       326 ~--~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       326 V--FAVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             H--HHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            1  1111111 1222223333344444444444444444556667789999999999999999999999999986

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=4.3e-28  Score=252.08  Aligned_cols=345  Identities=28%  Similarity=0.464  Sum_probs=283.6

Q ss_pred             HHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      +.+..+....+.....+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            34455666777888888999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHH
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~  371 (615)
                      .+  +++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..++|.+++.+.+..+|++.|++.++
T Consensus        84 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          84 AS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             hc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            87  7888999999999999999999999999999999999999999999999999999999999998899999998887


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      +.++..++.....                                       |.++...+..++..........+.|.+.
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYL  202 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7666555544332                                       3456667777777888888889999999


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LSITAVRKIMQSIGFLGPAFFLTQLSHVR-TPAMAVLCM  529 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~  529 (615)
                      .+.+|.+..+.+.......++..++.++.+++.||+++|+ ....+         ..............+ .....+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG---------LLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9877999999999999999999999999999999999986 43321         111111111111222 223333444


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHH
Q 007159          530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      +.+.+.....+.......+..++++|++..|+.+....++..++|.+.|.+.+..+|+..+.+.+++.+++.++...
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            44444444444445556666777999999999999999999999999999999999999999999998887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=4.9e-28  Score=257.37  Aligned_cols=366  Identities=14%  Similarity=0.125  Sum_probs=255.8

Q ss_pred             HHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcc
Q 007159          217 LLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~  295 (615)
                      ++.........+.++. +.+++|+|..++|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.+.+  
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--   97 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--
Confidence            3333444444555554 6789999999999999999999999999999999999999999999999999999988877  


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +++.+++.|++.|++.+...+...+++.+++|+++|++++++......+|..+||.+++++. .+||++.|++.+++.++
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~  176 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL  176 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence            78889999999999999889999999999999999999999999999999999999999998 68999999988776665


Q ss_pred             HHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          376 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL  455 (615)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~  455 (615)
                      ..++.....++.+++ +. .+ +              ....++.++++++++...+..+...........++|.|+++..
T Consensus       177 ~~i~~~~~~~~~~~~-~~-~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  239 (400)
T PRK11646        177 AAAFNAWLLPAYKLS-TV-RT-P--------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIA  239 (400)
T ss_pred             HHHHHHHhCCccccc-cc-ch-h--------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence            544433333321111 00 00 0              0114566778888776655554444444445668899998864


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHHHHh
Q 007159          456 KFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQ  533 (615)
Q Consensus       456 g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~  533 (615)
                      + ++.+.+.+++...++..++....+++.|| ++.++...       .  +....++....+...+..... +...+.+.
T Consensus       240 ~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-------~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  309 (400)
T PRK11646        240 G-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLM-------A--GLLIMSLSMFPIGMVSNLQQLFTLICLFYI  309 (400)
T ss_pred             C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH-------H--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4 77888888888777666555555665554 44332111       1  111111111111122223222 22223333


Q ss_pred             hhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccC---C-hhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          534 GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG---S-WDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~---g-~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      +.....+.......+..+++++|++.|+.+....+|..+||.+.|++.|..   + ....++..+++.+++.+......|
T Consensus       310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (400)
T PRK11646        310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFS  389 (400)
T ss_pred             HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333444556677899999999999999999999999999999873   2 456666666666666655554444


Q ss_pred             CCc
Q 007159          610 GER  612 (615)
Q Consensus       610 ~~k  612 (615)
                      ++|
T Consensus       390 ~~~  392 (400)
T PRK11646        390 QKR  392 (400)
T ss_pred             hch
Confidence            443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=9.4e-28  Score=254.84  Aligned_cols=361  Identities=16%  Similarity=0.097  Sum_probs=239.8

Q ss_pred             HHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHH-HHHHHHHhhHHhhhhcCCchHH-HHHHHHHHHHHHHHHhh
Q 007159          216 FLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVL-GFGVIWWSVATVLTPVA  292 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l-~~~l~~~~~G~l~Dr~Grk~~l-~~~~~l~~i~~~l~~~~  292 (615)
                      .++.......+.+.++. +.+++|++..++|++.+...+ ++.++++++++ .||+|+|+.+ +.+.++.+++.++.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            45555666666677666 578899999999999876655 55555555555 9999999875 45566666777777777


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccch--hhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER--SRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~  370 (615)
                      +  +++.+++.+.+.|...+...|...+++.++.++++|  +...++...+.++|.++||++++++.+++|||+.|++.+
T Consensus       103 ~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        103 R--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             h--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            6  666666665555555567778888888888766555  344578888999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          371 SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK-APVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      ++.++..+++....++.+++++... .+.+               ..   .++ +..+......++.......+..+.|.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  241 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLAT-GTLE---------------AP---RRNRRDTLLLFVICTLMWGTNSLYIINMPL  241 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCcccc-cccc---------------cc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666555544444332221110 0000               00   011 12233333334444445556678999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM  529 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  529 (615)
                      |+++.+|++..+.+.+.....++.+++.++.|++.||+++|+......  .   ... . .+....  ..+.+...+...
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~--~---~~~-~-~~~~~~--~~~~~~~~l~~~  312 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAA--V---AGV-C-FYAGML--MAHSPAILLGLQ  312 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH--H---HHH-H-HHHHHH--HHhhHHHHHHHH
Confidence            998889999999999888877888889999999999999986433211  0   111 1 111111  112233222222


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      ++.....+...........+..|+++|++.++++...++|..++|.++|++.|..||+.+|.+.+++.+++.++.+..
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            222222222222222333445567799999999999999999999999999999999999998888888877766655

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=6.1e-28  Score=256.03  Aligned_cols=371  Identities=12%  Similarity=0.054  Sum_probs=259.3

Q ss_pred             HHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      +++..++..++...+....+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++.+.++.+++.+++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            34555666665555666677778999999999999999999999999999999999999999999999999988887776


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHH
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~  371 (615)
                      ..  +.   ++.|+++|++.+...|+..+++.|++|+++|++++++......+|.++||.++|++.+. .|+..+++.+.
T Consensus        88 ~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         88 GI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             HH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            65  32   67899999999999999999999999999999999999999999999999999999885 47777766555


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      +.++..+.. ...++.+.++++.+.+... ...       .....++.++++|.+.......++...........+|.|+
T Consensus       162 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK11195        162 IYLLAALFN-LFIPRLGARRPGQSWNPIA-LLR-------DFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWA  232 (393)
T ss_pred             HHHHHHHHH-hcCCCCcccccccCCCHHH-HHH-------HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333322 2233222111110000000 000       0001245567777766555544444455555666778888


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH-H
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM-A  530 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  530 (615)
                      ++.+|.++.+.|++.....++.+++.++.+++.||.++++....+.     ..+     .........+.++..+... +
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-----~~~-----~~~~~~~~~~~~~~~~~~~~~  302 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-----LMG-----LVVLLMALQHSLLPAYPLLIL  302 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-----HHH-----HHHHHHHHHhHHHHHHHHHHH
Confidence            8889999999999999999999999999999999887765332111     111     1111111122333333333 3


Q ss_pred             HHhhhhhhhhhhhhhhhhccCcc-h-hhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          531 CSQGSDAFSQSGLYSNHQDIGPR-Y-AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .+.+......+ .....++.+|+ . +|++.++.++..+++..++..+.+.+ +..|.+..+.+.+...+++..+.+.++
T Consensus       303 ~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        303 IGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333 33333445554 3 69999999999999999999999966 667888888877777666666655554


Q ss_pred             c
Q 007159          609 T  609 (615)
Q Consensus       609 ~  609 (615)
                      .
T Consensus       381 ~  381 (393)
T PRK11195        381 W  381 (393)
T ss_pred             H
Confidence            3

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=6.9e-28  Score=262.79  Aligned_cols=399  Identities=15%  Similarity=0.169  Sum_probs=257.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhc--------CCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF--------NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG  276 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~  276 (615)
                      .++.++++.++.+..+++...+++..+.+.+++        +.+..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            355666667777888889898998888888877        888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh---------c-cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHH
Q 007159          277 FGVIWWSVATVLTPVAA---------R-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS  346 (615)
Q Consensus       277 ~~~~l~~i~~~l~~~~~---------~-~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~  346 (615)
                      ++.++++++.++++++.         + ..++.+++.|+++|++.+...+...++++|++|+++|++++++...+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            99999998888776531         1 1246678999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHhhhh--------cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCc-cccHHHHh---hhhcCCcccccccc
Q 007159          347 VTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEEKR---HILGGSISKEAVSV  414 (615)
Q Consensus       347 ~ig~~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~  414 (615)
                      ++++.+++.+.        +.+|||+.|++.++..++..+..+ ..++.++... +.+.++..   ....+.... ....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~  247 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQAL  247 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHHH
Confidence            99988776543        457999999987766666544433 3444332100 00111100   000000000 0000


Q ss_pred             ccHHHHhh-----hhhHHHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          415 IPWKLILS-----KAPVWAL-----I----ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG  480 (615)
Q Consensus       415 ~~~~~l~~-----~~~~~~~-----~----l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~  480 (615)
                      .+.+...+     .+.++..     .    ...+....+......+.|.++++ .|++....++.....++..+++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~  326 (479)
T PRK10077        248 QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLA  326 (479)
T ss_pred             HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            01111111     0111110     0    01111111223334456776655 78888777777777888889999999


Q ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhh-hhhhhhhhhhhccCcchhhHHH
Q 007159          481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDA-FSQSGLYSNHQDIGPRYAGVLL  559 (615)
Q Consensus       481 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~  559 (615)
                      +++.||+++|+.+..+.  ....++.+...  .................+.+.+... ..+.......+..+++.|+++.
T Consensus       327 g~l~dr~g~r~~~i~~~--~~~~v~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  402 (479)
T PRK10077        327 IMTVDKFGRKPLQIIGA--LGMAIGMFSLG--TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL  402 (479)
T ss_pred             HHHHHHhcChHHHHHhH--HHHHHHHHHHH--HHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHH
Confidence            99999999886544322  11111111111  1111111111222222222222222 1223334455566779999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh------eeccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          560 GLSNTAGVLAGVFGTAATGY------ILQRGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       560 gl~~~~~~lg~~igp~l~G~------l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      |+.+.+..++..+++.+.+.      +.+..++...|++.+++++++.++.+.+.++
T Consensus       403 g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        403 AIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999988666554      4466788888888887777776665544443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=6.3e-27  Score=254.82  Aligned_cols=378  Identities=14%  Similarity=0.160  Sum_probs=267.3

Q ss_pred             HHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-----CCchH-HHHHHHHHHHH
Q 007159          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKPV-LGFGVIWWSVA  285 (615)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-----Grk~~-l~~~~~l~~i~  285 (615)
                      .++..+..+.........+|.+.++.|.+..++|.+ +.....+ ++.+++|+++||+     |||+. +..+.++.+++
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~   94 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVA   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHH
Confidence            344445566777778888999999999999999997 4444444 6889999999999     99885 66777777777


Q ss_pred             HHHHHhhh-ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCCch
Q 007159          286 TVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWP  363 (615)
Q Consensus       286 ~~l~~~~~-~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~gw~  363 (615)
                      .+++++.+ ..+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..|||
T Consensus        95 ~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr  174 (491)
T PRK11010         95 IAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ  174 (491)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence            77766653 23577788899999999999999999999999999999999999999999999999999999998 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~  443 (615)
                      ..|++.+++.++..+..+. .+++++..+..+..+.            ....+++++++++..|...+..++........
T Consensus       175 ~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~  241 (491)
T PRK11010        175 GMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLEQ------------AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFA  241 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCccccccccchhh------------hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence            9999988776665544443 3332211110000000            00124566777777777666666666666677


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          444 LTWMPTYYNQVLKFNLTESGLFCV-LPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       444 ~~~~p~~~~~~~g~s~~~~g~~~~-~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      ..+.+.|+.+.+|++..+.+.+.. ...++.+++.+++|++.||+++++......  ....+.  ...+..+... ....
T Consensus       242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~--~l~~l~--~l~~~~l~~~-~~~~  316 (491)
T PRK11010        242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG--ILQGVS--NAGYWLLSIT-DKNL  316 (491)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHH--HHHHHHHHhc-cccH
Confidence            778888887778999999999874 556789999999999999999875432111  000111  1111111111 1222


Q ss_pred             HHHHHHHHH-HhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHH
Q 007159          523 AMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       523 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~  601 (615)
                      ..+....++ ....+..............+++..++..|+.+.+..+|..+++++.|++.|..||...|.+.+++++.+.
T Consensus       317 ~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l  396 (491)
T PRK11010        317 YSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL  396 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            222212222 1111111122223334455677889999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhc
Q 007159          602 LVWNLFAT  609 (615)
Q Consensus       602 l~~~~~~~  609 (615)
                      ++....++
T Consensus       397 ~~~~~~~~  404 (491)
T PRK11010        397 LLLLVCRQ  404 (491)
T ss_pred             HHHHHHHh
Confidence            77766643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=2.2e-27  Score=252.58  Aligned_cols=365  Identities=15%  Similarity=0.172  Sum_probs=261.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      ++.+++.++..++......+..|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||++++++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34455566666777788889999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhhh-ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC--------
Q 007159          289 TPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------  359 (615)
Q Consensus       289 ~~~~~-~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~--------  359 (615)
                      +..+. ..+++.+++.|++.|+|.+...+..+.++.++.|++++++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            65432 236888999999999999999999999999999999999999999999999999999999877532        


Q ss_pred             ------------------CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHh
Q 007159          360 ------------------FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL  421 (615)
Q Consensus       360 ------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  421 (615)
                                        .+||++|++.+++.++..+++.+... ++.++++.++..              .....+.++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~-p~~~~~~~~~~~--------------~~~~~~~~~  229 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKM-PALNHSDAKQIS--------------FSASLSRLA  229 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccccc--------------chhhHHHHH
Confidence                              35999999888876665544432221 111111000000              001334577


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Q 007159          422 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL-KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKI  500 (615)
Q Consensus       422 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~-g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~  500 (615)
                      ++|.++...+..+++........++++.|.++.. +.+....+.+.+....+..+|+++++++.||+++++.+..     
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i-----  304 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMA-----  304 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH-----
Confidence            8888888888888887778788899999987632 4444455556667778889999999999999988864321     


Q ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhe
Q 007159          501 MQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI  580 (615)
Q Consensus       501 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l  580 (615)
                         ...... +..+.....+.....+.+.+++.+...+++.......+..+++....+.++...  .+|+.+.|++.|++
T Consensus       305 ---~~~~~~-~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~  378 (410)
T TIGR00885       305 ---YAIIGM-ALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFI  378 (410)
T ss_pred             ---HHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHH
Confidence               111111 111111122222334445555555555555444445555555544334444333  39999999999999


Q ss_pred             eccC------ChhHHHHHHHHHHHH
Q 007159          581 LQRG------SWDDVFKVAVVLYII  599 (615)
Q Consensus       581 ~~~~------g~~~~f~~~~~~~l~  599 (615)
                      .|..      +++..|++..++.+.
T Consensus       379 ~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       379 IDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHhcccccCccchHHHHHHHHHHH
Confidence            9953      577888775555444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1.5e-27  Score=253.27  Aligned_cols=365  Identities=11%  Similarity=0.090  Sum_probs=258.3

Q ss_pred             HHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh
Q 007159          214 SAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~  292 (615)
                      +..++.........+.+|. +.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            3444455566666666655 567899999999999999999999999999999999999999999999999988888888


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~  372 (615)
                      +  +++.+++++++.|.+.+...+...++..|..++++|++++++.....++|.++||.+++++.+ .+|++.|++.+++
T Consensus        94 ~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054         94 N--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence            7  677788888888888888888899999999999999999999999999999999999999875 7999999987777


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (615)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  452 (615)
                      .++..++.....++.++++++.+++.                ...++.+++|.++.+.+..++..+.......+.+.|..
T Consensus       171 ~~i~~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  234 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKAIATETGSV----------------WSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVM  234 (395)
T ss_pred             HHHHHHHHHHHHhccccccccchhhh----------------hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            66654444333322211111100000                01245678888888877777766666666667777765


Q ss_pred             HH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q 007159          453 QV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMA  530 (615)
Q Consensus       453 ~~--~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  530 (615)
                      ..  .+.+....+.++....+.........|++.||.++|+....+       ..+.............+.+.+.+....
T Consensus       235 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (395)
T PRK10054        235 VVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAG-------TLCFVIGLVGFIFSGNSLLLWGMSAAV  307 (395)
T ss_pred             HhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHH-------HHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence            43  355566677777777777777778889999999887543211       111111111111111122222333333


Q ss_pred             HHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHH
Q 007159          531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      .+.+.....+.......+..+++.++++.+..+ ...+|..+||.++|++.|+.|+...|++.+++..++.++..
T Consensus       308 ~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        308 FTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            333333333333333445567788899988765 67799999999999999999999999887776666555444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=3.6e-27  Score=249.46  Aligned_cols=357  Identities=11%  Similarity=0.078  Sum_probs=250.8

Q ss_pred             HHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCc----hHHHHHHHHHHHHHHHHHh
Q 007159          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK----PVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk----~~l~~~~~l~~i~~~l~~~  291 (615)
                      ++........+.+.+|.+.+++|.|..++|++.+++.++..++++++|++.||+||+    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445567788899999999999999999999999999999999999999999984    3332222221  1122222


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHH
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~  371 (615)
                      .+  +++.+++.|++.|++.+...+...+++.++  +++|+++++......++|.++||++++++.+++|||..|++.++
T Consensus        91 ~~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 AH--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             cc--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            33  688888999999999999999888888876  45688888999999999999999999999999999999987776


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      ..++..+... ..++.++++++ ++ .           ......++++++++|.+|.+.+..++..........+.|.|+
T Consensus       167 ~~~~~~~~~~-~~~~~~~~~~~-~~-~-----------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  232 (382)
T PRK11128        167 GVASMLLGQL-LRPTIMPQGES-RQ-Q-----------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW  232 (382)
T ss_pred             HHHHHHHHHH-ccCCCCCcccc-cc-c-----------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5444433332 22221111110 00 0           000113577889999999888877777777777888889999


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC  531 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  531 (615)
                      ++ .|++..+.|.+.+...++.++..++.+++.||+++++.+..         +....++........+.++..+...++
T Consensus       233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLL---------SAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---------HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            76 79999999999998889899999999999999998864321         122222222222223444433333333


Q ss_pred             HhhhhhhhhhhhhhhhhccCcchhhHHHHHHH-HHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHH
Q 007159          532 SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~-~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~  603 (615)
                      .+.......+.......+.+++++++..++.+ ....+|..+||.++|.+.|..|+ ..++..+++.+++.++
T Consensus       303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            33333333444444444456777788899886 44577889999999999999887 4666666666555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.96  E-value=1.2e-26  Score=251.11  Aligned_cols=378  Identities=16%  Similarity=0.166  Sum_probs=287.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      +-.++++.+++.++..+...+.+.+..++.-|+..++++.++..+..++..+++|.++||++||++++.+.++.++..++
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            44456677778888888888999988888889999999999999999999999999999999999999999887765544


Q ss_pred             HHh---hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          289 TPV---AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       289 ~~~---~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      .++   ....+.+.+++.-++.|++.+...|+..+++.++.|+++...++++.+...++..++||.++|.++..+|-.++
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            332   33346788899999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007159          366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT  445 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  445 (615)
                      |++.++..++....+...+++.+++ +..++.-....           ...++.+.++|.+...++..++.++....+..
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~~~-~~~~e~~~~~l-----------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a  239 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPPPS-SLPRERFFSAL-----------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWA  239 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccccc-ccchhhhhhhH-----------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHH
Confidence            9988776665544444333322211 11111100000           11456666777777666666666666666777


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA  525 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  525 (615)
                      .+|.+.++.+|.++...|++.+..++|+++|.++.+++.+|+++++.+.         .+.+..++.+..+...+..+..
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~---------~~~~~~a~~~~~lal~~~~~~~  310 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL---------LASLLFALALLLLALSPSFWLA  310 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH---------HHHHHHHHHHHHHhcchHHHHH
Confidence            8899999999999999999999999999999999999998887765332         2222233333333444455544


Q ss_pred             HHHHHHHhhhhhhhhhh-hhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHH
Q 007159          526 VLCMACSQGSDAFSQSG-LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~  604 (615)
                      ...+++.+......... ........|++.+|++++++.++...+..+|.++.|.+.+..|...++.++++..+++.++.
T Consensus       311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444333 34456667889999999999999999999999999999999999999988887777766665


Q ss_pred             HHH
Q 007159          605 NLF  607 (615)
Q Consensus       605 ~~~  607 (615)
                      ...
T Consensus       391 ~~~  393 (524)
T PF05977_consen  391 LRF  393 (524)
T ss_pred             HHh
Confidence            544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=6.2e-26  Score=241.67  Aligned_cols=373  Identities=13%  Similarity=0.084  Sum_probs=257.5

Q ss_pred             HHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-----CCch-HHHHHHHHHHHHH
Q 007159          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKP-VLGFGVIWWSVAT  286 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-----Grk~-~l~~~~~l~~i~~  286 (615)
                      +..++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| +++++.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            44566777888888889999999999999999999776665  68999999999999     7765 7888888888877


Q ss_pred             HHHHhhhc-cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-CCchH
Q 007159          287 VLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPS  364 (615)
Q Consensus       287 ~l~~~~~~-~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-~gw~~  364 (615)
                      .++.+.+. .+++.+++..++.+++.+...++..+++.+++|+++|+++.++...+..+|.++++.+++.+.+. +|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            77777632 24666777878888888999999999999999999999999999999999999999999998885 59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .|++.+++.++..+.... .++++.++++.++ ..++           ....+++++++|.++.+++..++.........
T Consensus       163 ~f~i~a~~~l~~~l~~~~-~~e~~~~~~~~~~-~~~~-----------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~  229 (402)
T PRK11902        163 TYLLMAGLMLAGALTTLW-APEPEVPARPPRS-LGEA-----------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAG  229 (402)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCCcccccccch-hHHH-----------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHH
Confidence            999888776654443332 2322221111100 0000           11256778889888887777666655544444


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc-ccch
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPW-LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH-VRTP  522 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~-i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  522 (615)
                      .+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++++.....      .+......+.+..... .+..
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~------~~~~~l~~l~~~~~~~~~~~~  303 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLF------GVLQAVSNLGYWVLAVTPKHL  303 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHhcCCcH
Confidence            55566677778999999999876654 46889999999999999988643211      1111111111111111 2232


Q ss_pred             HHHHHHHH----HHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHH
Q 007159          523 AMAVLCMA----CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI  598 (615)
Q Consensus       523 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l  598 (615)
                      +.++....    +.+............+.+   .+..++..++.+.+..++..++++++|.+.|..||...|.+.+++++
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~  380 (402)
T PRK11902        304 WTMALAIGIENLCGGMGTAAFVALLMALCN---RSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIAL  380 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            33332221    222222222222222332   22334455666777778888778899999999999999999999888


Q ss_pred             HHHHHHHHHhc
Q 007159          599 IGTLVWNLFAT  609 (615)
Q Consensus       599 ~~~l~~~~~~~  609 (615)
                      ++.++.....+
T Consensus       381 ~~~~~~~~~~~  391 (402)
T PRK11902        381 PGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHHHhh
Confidence            88776655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=7.3e-29  Score=251.47  Aligned_cols=378  Identities=16%  Similarity=0.214  Sum_probs=281.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      ++.++.++++++..++..++.+.+....+.+.+.+|++++..|++.+.+.+.++++.|++|+++|||+||+++.+|..++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            34467778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-  361 (615)
                      .++.++++++.  .+|+++++|.+.|+|.+...|+++++++|.+|+++|++.+++++.+..+|..+|.+.+..+.+..+ 
T Consensus       109 ~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  109 TLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            99999999997  789999999999999999999999999999999999999999999999999999999999988776 


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 007159          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTF  441 (615)
Q Consensus       362 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  441 (615)
                      |||.|+..+++.++..++.+...+++++...++.+.+..     ..........+.+.+.+++.+....+......+...
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G  261 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG  261 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-----CCCCccchHHHHHHHHccCceeeehHHHHHHHHhcc
Confidence            999999999999888888777776665432211111100     011122223456666666777666666666666666


Q ss_pred             HHHHHHHHHHHH---HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--HHHHHHHHHHHHHHHHHHHHHHh
Q 007159          442 ILLTWMPTYYNQ---VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS--ITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       442 ~~~~~~p~~~~~---~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      .+..|.|.+...   ..|++.....++..+...++.+|.+++|.++||+.+....  ...........+....+.++...
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~  341 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF  341 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH
Confidence            666677766543   3455656666777788888999999999999996543221  11112233333333333333222


Q ss_pred             cc--ccchHHHHHHHHHHhhhhhhhhhhhh-hhhhccCcchhhHHHHHHHHHHHHHH-HHHHHHhhheecc-CChh
Q 007159          517 SH--VRTPAMAVLCMACSQGSDAFSQSGLY-SNHQDIGPRYAGVLLGLSNTAGVLAG-VFGTAATGYILQR-GSWD  587 (615)
Q Consensus       517 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~gl~~~~~~lg~-~igp~l~G~l~~~-~g~~  587 (615)
                      ..  ....+..+.+++++.......+.... ...+.++|+.|.++.++...+..+.+ +-+|.+.|.+.|+ .||+
T Consensus       342 ~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  342 PAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            22  22333444444444444444444333 35566789999999999888876655 4455599999987 4555

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=4.5e-27  Score=246.91  Aligned_cols=347  Identities=16%  Similarity=0.197  Sum_probs=241.9

Q ss_pred             HHHHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 007159          211 LCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      .+++.++........+.+..|. +.+++|++..+++++.+++.+++.++++++|+++||+|||++++++.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3555666667777888899995 889999999999999999999999999999999999999999999999999999888


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc----------C
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ----------K  359 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~----------~  359 (615)
                      ++++. +++.+++.|++.|++.+. .+....++.+++|+++|++++++......+|..+++.+++.+..          .
T Consensus        85 ~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 GLAVQ-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             HHHhh-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            87752 567788999999999654 56678899999999999999999998888888888777766654          3


Q ss_pred             CCchHHHH-HHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHH
Q 007159          360 FGWPSVFY-SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (615)
Q Consensus       360 ~gw~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  438 (615)
                      .+||+.|+ ..+++..+..++.+...++.++++++..+.+.+   +.....+.......++.+++++++.+.+..++...
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTFG  239 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHHH
Confidence            48999994 435444444443333333332221111100000   00000000011144567788888888877777777


Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007159          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH  518 (615)
Q Consensus       439 ~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  518 (615)
                      .......++|.|+++.+|+++.+.+.+..+..+..++++++.|++.||+++|+.....       .........++....
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~-------~~~~~~~~~~~~~~~  312 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMS-------FLGVAMGAFLVVLGL  312 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHH-------HHHHHHHHHHHHhcC
Confidence            7778888999999998999999999999999999999999999999999998643321       111111122222112


Q ss_pred             cc--chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 007159          519 VR--TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA  569 (615)
Q Consensus       519 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg  569 (615)
                      ..  .....+..........+...........+..|+++|++.|+.+...++|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       313 VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             CCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            21  2322222222222222333333444444556789999999999887765

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=4.4e-27  Score=246.23  Aligned_cols=331  Identities=11%  Similarity=0.128  Sum_probs=240.0

Q ss_pred             hHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHH
Q 007159          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM  303 (615)
Q Consensus       224 ~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~  303 (615)
                      ..+++.+|.+.+++|++..++|++.+++.+++.++.++.|++.||+|+|+++.++.++..++.+++ ..+  +.+.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999998888887766 555  67788999


Q ss_pred             HHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC--CchHHHHHHHHHHHHHHHHHH
Q 007159          304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       304 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      |++.|++.+...+....++.++++ ++|++++++...+..+|..+++.+++.+.+..  +||+.|.+.+++.++....+.
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~  172 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWI  172 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888888888999985 68999999999999999999999999887765  399998876655443332222


Q ss_pred             hhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Q 007159          382 KKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE  461 (615)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~  461 (615)
                      ...+++++  ++..                ......++++++|.++.+.+..++....++....++|.|+++ +|++..+
T Consensus       173 ~~~~~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~  233 (355)
T TIGR00896       173 PQVRRRVA--ANQT----------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAAT  233 (355)
T ss_pred             hhhccccC--CCCC----------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence            11111110  0000                000123446778888877776666677778888899999987 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhh
Q 007159          462 SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQS  541 (615)
Q Consensus       462 ~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                      .+.+.+...++.++++++.|++.||++.++...      .....+...+.............  ....+.+.+.....+.
T Consensus       234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       234 AGSLLALMQLAQAASALLIPALARRVKDQRGIV------AVLAVLQLVGLCGLLFAPMHGLW--AWALVLGLGQGGAFPL  305 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH------HHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHhhhhHhHH
Confidence            999999999999999999999999996553221      11111111111111111111111  1223333333333333


Q ss_pred             hhhhhhhccC-cchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC
Q 007159          542 GLYSNHQDIG-PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS  585 (615)
Q Consensus       542 ~~~~~~~~~~-~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g  585 (615)
                      ......+..+ +++++...++.+.+..++..++|.+.|++.|+.|
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2333333333 4677999999999999999999999999998754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=6.5e-27  Score=247.45  Aligned_cols=361  Identities=17%  Similarity=0.167  Sum_probs=248.0

Q ss_pred             HHhhhhhHHHHhHHHHHhhcC--CCchhhHHHHHH-----HHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHH
Q 007159          218 LCNMDRVNMSIAILPMSKEFN--WNSTTVGLIQSS-----FFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP  290 (615)
Q Consensus       218 ~~~~~~~~~~~~~~~i~~~~g--~s~~~~g~i~s~-----~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~  290 (615)
                      ..+++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            456777777877777777654  445566654443     3334456889999999999999999999999999999998


Q ss_pred             hhhccC------hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhh-------
Q 007159          291 VAARIG------LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-------  357 (615)
Q Consensus       291 ~~~~~~------~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~-------  357 (615)
                      ++++..      ...+++.|+++|++.+...+...+++.|++++++|++..++...+..+|.++++.++..+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            887321      1257889999999999999999999999999999999999999999999999998877653       


Q ss_pred             -cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhh--HHHHHHHHH
Q 007159          358 -QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP--VWALIISHF  434 (615)
Q Consensus       358 -~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~l~~~  434 (615)
                       +.++||+.|++.+++.++...+.. ..++.++.+   .++++.          .....++++.+++++  ++...+..+
T Consensus       164 ~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
T TIGR00883       164 LLEWGWRIPFLVSAVLVLIGLYLRR-NLEETPVFE---KAQEKH----------KKKRGPIRETLTKHRKPFLLGLGLVI  229 (394)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHH-hcCCChhHH---HHHhcc----------ccccCCHHHHHHhchHHHHHHHHHHH
Confidence             357899999876665544333222 222211110   000000          001124555666654  666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH-HHH
Q 007159          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA-FFL  513 (615)
Q Consensus       435 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~l  513 (615)
                      +.....+....++|.|+++.+|.+..+.+.......++..++.++.|++.||+++|+.....      ........ ..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~------~~~~~~~~~~~~  303 (394)
T TIGR00883       230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF------TVLAALLAVPLL  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH------HHHHHHHHHHHH
Confidence            66677777888999999888899999999999999999999999999999999988643211      11111111 111


Q ss_pred             HHhccccchHHHHH-HHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHH-HHHHHHHHHHHHHHhhheeccCC-hhHHH
Q 007159          514 TQLSHVRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS-NTAGVLAGVFGTAATGYILQRGS-WDDVF  590 (615)
Q Consensus       514 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~-~~~~~lg~~igp~l~G~l~~~~g-~~~~f  590 (615)
                      .........+.... ..+.+.+.............+..+++.|+++.++. +....+|..++|.+.|++.|..| |...+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence            11111222333322 33333333334444444456667778999999985 45566888999999999999877 77666


Q ss_pred             HHHHHHHH
Q 007159          591 KVAVVLYI  598 (615)
Q Consensus       591 ~~~~~~~l  598 (615)
                      +...++++
T Consensus       384 ~~~~~~~l  391 (394)
T TIGR00883       384 YYLAALAL  391 (394)
T ss_pred             HHHHHHHH
Confidence            66555444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=3.9e-26  Score=250.24  Aligned_cols=396  Identities=15%  Similarity=0.151  Sum_probs=254.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhc-----CCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF-----NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG  278 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~  278 (615)
                      ..+.++.++.++.+..+++...++...|.+..++     ..+..+.+++.+.+.++++++.+++|+++||+|||+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3456777777888889999999998888876642     34556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc----ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHh
Q 007159          279 VIWWSVATVLTPVAARI----GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (615)
Q Consensus       279 ~~l~~i~~~l~~~~~~~----~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~  354 (615)
                      .++..++.++++++++.    +++.++++|++.|++.+...+....+++|++|+++|++++++......+|.++++.++.
T Consensus        93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888877521    15789999999999999999999999999999999999999999999999999998877


Q ss_pred             hhhc-----------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCC---Cccc-c-HHH-Hhhhhc-
Q 007159          355 ILIQ-----------------------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE---DPEL-R-AEE-KRHILG-  404 (615)
Q Consensus       355 ~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-~~~-~~~~~~-  404 (615)
                      ++..                       .++||+.|.+.++..++..++ ....|++|+-   +.+. + ..+ ..+..+ 
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            5532                       247999997665555443333 3344554431   1111 0 000 000000 


Q ss_pred             ---CCcc-------ccccccccHHHHhhh---hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH---
Q 007159          405 ---GSIS-------KEAVSVIPWKLILSK---APVWA----LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL---  464 (615)
Q Consensus       405 ---~~~~-------~~~~~~~~~~~l~~~---~~~~~----~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~---  464 (615)
                         ....       ++.....++++++++   ++.+.    ..+..++....+++...+.|.++++ .|++....+.   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~  330 (502)
T TIGR00887       252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAY  330 (502)
T ss_pred             ccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHH
Confidence               0000       000011246666542   12211    1222333334455666678888875 6876542211   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhh
Q 007159          465 ---------FCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGS  535 (615)
Q Consensus       465 ---------~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  535 (615)
                               ...+..++.+++.++.+++.||+|||+....+.  ....+++.+.++.  .............++......
T Consensus       331 ~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~--~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~  406 (502)
T TIGR00887       331 EELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGF--FILTVLFFVLGFA--YNHLSTHGFLAIYVLAQFFAN  406 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH--HHHHHHHHHHHHH--HHhcchhHHHHHHHHHHHHHh
Confidence                     123344566678889999999999997544321  1111111111111  000011111111111111111


Q ss_pred             hhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc----------CChhHHHHHHHHHHHHHHHHHH
Q 007159          536 DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR----------GSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~----------~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      .+..+.......+..|++.|+++.|+.+.+..++++++|.+.|++.+.          .++...|.+.+++++++.+.++
T Consensus       407 ~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  486 (502)
T TIGR00887       407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL  486 (502)
T ss_pred             cCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHhe
Confidence            112222222345566779999999999999999999999999999884          3455677777777777665543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.7e-27  Score=252.34  Aligned_cols=394  Identities=17%  Similarity=0.232  Sum_probs=306.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      -|.+++..++..+........++.+.+.++++++.+..+++|+.++....+.+..|+.+.+.||+|.|.+.++|.++..+
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            37888888888777777777778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +.++.+++++. +..++...++.|+|.++.+.+...++..+| +++|+.++|+...+.++|.++-|.+..++.+.+|||+
T Consensus       124 g~~lssF~~~i-~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~  201 (509)
T KOG2504|consen  124 GLLLSSFATSL-WQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG  201 (509)
T ss_pred             HHHHHHHHhhH-HHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence            99999999942 345566788999999999999999999998 7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCcc--------------------ccHHHH------------hhhhcCCcccc--
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPE--------------------LRAEEK------------RHILGGSISKE--  410 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~------------~~~~~~~~~~~--  410 (615)
                      .+++.+.+.+-..+.....++..+...+.                    ....+.            ....+......  
T Consensus       202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (509)
T KOG2504|consen  202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS  281 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence            99998888766555555555422221111                    000000            00000000000  


Q ss_pred             ccccccH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          411 AVSVIPW---KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL  487 (615)
Q Consensus       411 ~~~~~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~  487 (615)
                      ..+....   .++++++.++.+.+...+...++.....++|.|..+ +|++..+++.++++.++..++++++.|++.|+.
T Consensus       282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~  360 (509)
T KOG2504|consen  282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP  360 (509)
T ss_pred             chhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence            1111112   467889999999999999999999999999999995 799999999999999999999999999999998


Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 007159          488 VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG  566 (615)
Q Consensus       488 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~  566 (615)
                      ..++.       .+..++++..++..+..+....+. +...+.+++...+...........+..+.++...+.|+...+.
T Consensus       361 ~~~~~-------~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  361 GIRAL-------VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             ccchH-------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            85532       233333444444434444444444 3444444444444443333345667778899999999999999


Q ss_pred             HHHHHHHHHHhhheeccCC-hhHHHHHHHHHHHHHHHHHHHHh
Q 007159          567 VLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       567 ~lg~~igp~l~G~l~~~~g-~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .++..+||++.|++.|..+ |...|++++++.+++.+++++..
T Consensus       434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999865 99999999999999987776654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=7e-27  Score=249.07  Aligned_cols=280  Identities=19%  Similarity=0.312  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHh-HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIA-ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      .++..++..++....+...+.-+ +..+.++.+....+.+.+.++++++++++++++|.+.||++..+.+....+++++.
T Consensus        45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~  124 (495)
T KOG2533|consen   45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF  124 (495)
T ss_pred             HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence            34444555566666666655533 44467899999999999999999999999999999999999988998888888888


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhh------cC
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI------QK  359 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~------~~  359 (615)
                      .++.....  +++.+++.|++.|+..+..+|....+++.|+.++||++.++++.+..++|.++|++++..+.      ..
T Consensus       125 ~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  125 GFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            87777776  78999999999999999999999999999999999999999999999999999999998863      45


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHh----hhh--cCCccccccccccHHHHhhhhhHHHHHHHH
Q 007159          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR----HIL--GGSISKEAVSVIPWKLILSKAPVWALIISH  433 (615)
Q Consensus       360 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  433 (615)
                      .||||.|++.+++.++..++.++..|+.|.+..-..++++.    ...  ......+..+...+++.+++|.+|.+.+..
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~  282 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY  282 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence            78999999999999999988888888877754333333311    111  111111115567888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007159          434 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (615)
Q Consensus       434 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g  488 (615)
                      ++.....+++.+|+|.|+.+..|++..+++.+.++..++++++.++.|+++||+.
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999966799999999999999999999999999999964

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.96  E-value=2.8e-26  Score=245.83  Aligned_cols=377  Identities=14%  Similarity=0.060  Sum_probs=238.3

Q ss_pred             HHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHH---
Q 007159          215 AFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---  290 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~---  290 (615)
                      .+++.......+.+.++.+ .+++|+|..++|++.+++.++..++++++|+++||+|||++++++..+.+++.....   
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   97 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444556666654 556999999999999999999999999999999999999999887666554433211   


Q ss_pred             hhhcc--C-hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          291 VAARI--G-LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       291 ~~~~~--~-~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      .....  . +...++.+++.|.+.....+....+..+.  .++++..++.......+|.+++|++++.+.+ .+|++.|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~  174 (420)
T PRK09528         98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFW  174 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHH
Confidence            11100  0 11122233344444333334444443322  3456778889899999999999999998876 58999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM  447 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  447 (615)
                      +.+++.++..++.+...++++++.+. ++++..       ++........+..+++|.++.+.+..++..........++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~  246 (420)
T PRK09528        175 LGSGSALILLVLLFFAKPDAPSTAKV-ANALGA-------NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQF  246 (420)
T ss_pred             HHHHHHHHHHHHHhcccccccchhhh-ccchhc-------ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHH
Confidence            87777666555554443333221110 000000       0011112234567788887766665555555555555677


Q ss_pred             HHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          448 PTYYNQVL---KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       448 p~~~~~~~---g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      |.|+.+.+   +.+..+.|.+.++..++.+++.++.|++.||+++|+....+.       .+......+.  ...+.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~-------~l~~~~~~l~--~~~~~~~~  317 (420)
T PRK09528        247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAG-------TIMAVRIIGS--GFATGPLE  317 (420)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH-------HHHHHHHHHH--HhcccHHH
Confidence            88876643   566677889999999999999999999999999997543211       1111111111  12233333


Q ss_pred             HHHHHHHHhhhhhh-hhhhhhhhhhccCcchhhHHHHH-HHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQGSDAF-SQSGLYSNHQDIGPRYAGVLLGL-SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       525 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~gl-~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      .+....+.+..... .........+..+++.+++..+. .++...+|..++|.+.|++.|..||+.+|.+.+++.++..+
T Consensus       318 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~  397 (420)
T PRK09528        318 VSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTL  397 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence            33333332222222 22233334556777888887665 67778999999999999999999999999998888877766


Q ss_pred             HHHHHhcCC
Q 007159          603 VWNLFATGE  611 (615)
Q Consensus       603 ~~~~~~~~~  611 (615)
                      +.....+++
T Consensus       398 ~~~~~~~~~  406 (420)
T PRK09528        398 ISVFTLSGD  406 (420)
T ss_pred             HHHHHhcCC
Confidence            665554443

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=2.7e-26  Score=252.04  Aligned_cols=361  Identities=15%  Similarity=0.093  Sum_probs=243.5

Q ss_pred             HhHHHHHhhcCCC---chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          228 IAILPMSKEFNWN---STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       228 ~~~~~i~~~~g~s---~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      +..+.+.+|++++   ..+.+++.+++.++.+++.+++|+++||+|||++++++.++.+++.++.++++  +++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            5667899999999   89999999999999999999999999999999999999999999999998888  889999999


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  384 (615)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.++..++..+..+ ..
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~-~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSW-FV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH-hc
Confidence            999999999999999999999999999999999999999999999998876654   99999988877666555543 33


Q ss_pred             cCCCCC----CccccH-HHHhh--hhcC-------------CccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          385 YSSPKE----DPELRA-EEKRH--ILGG-------------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       385 ~~~~~~----~~~~~~-~~~~~--~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      ++.++.    .+..+. +..++  ..++             ....+..+...++.++++|.++...+..++..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            333321    000000 00000  0000             000001112366778888887776665554444333333


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      ..++.+.. .++.+..   ....+.++..+++.++.+++.||+|+|+.+...       .........++........+.
T Consensus       344 ~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~-------~~~~~~~~l~~~~~~~~~~~~  412 (505)
T TIGR00898       344 YGLVLDLG-NLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAAS-------LLLAGVALLLLLFVPVDLYFL  412 (505)
T ss_pred             HHHhcccc-ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHcCCCchHH
Confidence            33333333 3455533   333455677788899999999999988643321       111111111111111221122


Q ss_pred             HHHHHHHHhh-hhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQG-SDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       525 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~  603 (615)
                      .+...+++.+ .............+..|++.|+++.|+.+++..+|++++|.+.+ + +..++...+.+.+++.+++.++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence            2222222222 22223333333455567789999999999999999999999999 4 4455666777777776666555


Q ss_pred             HHHH
Q 007159          604 WNLF  607 (615)
Q Consensus       604 ~~~~  607 (615)
                      .+++
T Consensus       491 ~~~l  494 (505)
T TIGR00898       491 TLFL  494 (505)
T ss_pred             HHcC
Confidence            5444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=1e-25  Score=270.63  Aligned_cols=348  Identities=13%  Similarity=0.107  Sum_probs=245.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHH---HHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHH
Q 007159          242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG---VIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAM  318 (615)
Q Consensus       242 ~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~---~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~  318 (615)
                      ..+++..+++.++++++++++|+++||+|||+++...   .++..+..++....+  +++.++++|+++|++.+...|+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~  129 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN--SVPLLFAALFLMGIHSALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHH
Confidence            4578899999999999999999999999999976432   222222222222334  78899999999999999999999


Q ss_pred             HHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHH
Q 007159          319 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE  398 (615)
Q Consensus       319 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (615)
                      .+++.++++++++++++|+.+++..+|.++||+++|++....+|++.|+..+++.++.+++.++. ++.+..++..+...
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  208 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI-PKTGNAAPDLKIDR  208 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCeecc
Confidence            99999999999999999999999999999999999999999999999954444444433333333 22221111110000


Q ss_pred             HhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q 007159          399 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN  478 (615)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~  478 (615)
                      ..         .......++.+.+++.+|.+.+..++..+....+.+++|.|+++.+|.++...|++.+...++.+++.+
T Consensus       209 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~  279 (1140)
T PRK06814        209 NI---------IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSF  279 (1140)
T ss_pred             ch---------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            00         000012467788899999988888888888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH-------------HH-HhccccchHHHHHHHHHHhhhhhhhhhhhh
Q 007159          479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF-------------LT-QLSHVRTPAMAVLCMACSQGSDAFSQSGLY  544 (615)
Q Consensus       479 l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------------l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (615)
                      +.|++.++...++....+.  +...+..+...+.             +. .....+.+.+.+..++++.+......+...
T Consensus       280 ~~g~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  357 (1140)
T PRK06814        280 LASKLSEGRITLLYVPIGA--LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA  357 (1140)
T ss_pred             HHHHHhCCceeeeeehHHH--HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            9999998877665443221  1111111111110             00 000123333344444455444444445455


Q ss_pred             hhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec-cCChhHHHHHHHHHHHHHHHH
Q 007159          545 SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       545 ~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~-~~g~~~~f~~~~~~~l~~~l~  603 (615)
                      ...+..+++.+|+++|+.+++..++..+++++.|.+.+ ..++...+++.+++.++..++
T Consensus       358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  417 (1140)
T PRK06814        358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAIL  417 (1140)
T ss_pred             HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            56677888999999999999999999999999999985 467777776666554444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=4.1e-25  Score=234.91  Aligned_cols=375  Identities=13%  Similarity=0.039  Sum_probs=251.7

Q ss_pred             HHHHHHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 007159          211 LCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      .+...+++.+.....+.+.+|.+ .+++|++..++|++.+++.++..++++++|+++||+|||+.++.+.+..+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33444555566666777777765 55789999999999999999999999999999999999999988776665544322


Q ss_pred             ---Hhhh---ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          290 ---PVAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       290 ---~~~~---~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                         .+.+   ...+..+++.+++.|++.+...+....+..+..  ++++..++......++|.++||++++.+.+ .+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence               1111   001334566788889988888888888877753  334567788888889999999999998865 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007159          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~  443 (615)
                      +.|++.+++.++..++.+...+++++++ +.  ++..   +  .+++..+..++++++++|.++.+.+..++....+...
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~---~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  234 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSSA-TV--ANAL---G--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVF  234 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhh-hh--hccc---c--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            9999888777766555444333322211 00  0000   0  0011112235677889998887777666666556666


Q ss_pred             HHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          444 LTWMPTYYNQVL---KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       444 ~~~~p~~~~~~~---g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      ..+.|.|+.+.+   +.+....|...++..+...++.+..+++.||+++|+....+         ..+.++.........
T Consensus       235 ~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~---------~~l~~l~~~~~~~~~  305 (396)
T TIGR00882       235 DQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIA---------GTIMSVRIIGSSFAT  305 (396)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH---------HHHHHHHHHHHHhcC
Confidence            667888887765   45666788888888889999999999999999999754322         111111111111223


Q ss_pred             chHHHHHHHHHHhhhhhhhhh-hhhhhhhccCcchhhHHHHH-HHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHH
Q 007159          521 TPAMAVLCMACSQGSDAFSQS-GLYSNHQDIGPRYAGVLLGL-SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI  598 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~gl-~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l  598 (615)
                      .++.++...++.+........ ......+..+++.+++..+. .+....+|..+++.+.|++.|..||..+|.+.+++.+
T Consensus       306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~  385 (396)
T TIGR00882       306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL  385 (396)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHH
Confidence            333333222222222222221 22223344566777776666 6788999999999999999999999999999998887


Q ss_pred             HHHHHHH
Q 007159          599 IGTLVWN  605 (615)
Q Consensus       599 ~~~l~~~  605 (615)
                      +..++..
T Consensus       386 i~~~~~~  392 (396)
T TIGR00882       386 LFTLISV  392 (396)
T ss_pred             HHHHHHH
Confidence            7766543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=1.5e-24  Score=231.78  Aligned_cols=368  Identities=11%  Similarity=0.069  Sum_probs=241.7

Q ss_pred             HHHHHhhhhhHHHH-hHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCC-chHHHHHHHHHHHHHHHHHhh
Q 007159          215 AFLLCNMDRVNMSI-AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Gr-k~~l~~~~~l~~i~~~l~~~~  292 (615)
                      .+++.+.....+.+ ..+.+.+++|++..++|++.+++.++.+++++++|+++||+|+ |+++.++.++..++..+..+.
T Consensus        10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~   89 (418)
T TIGR00889        10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV   89 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555544 4455677899999999999999999999999999999999965 778888888887887777777


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhc--------ccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW--------IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      +  +++.+++.|++.|++.+...+...++...+        .....|.+.+|      .+|.++||.+++.+....+|. 
T Consensus        90 ~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-  160 (418)
T TIGR00889        90 T--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-  160 (418)
T ss_pred             c--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-
Confidence            6  778888999999998887777776654322        22223444444      478899999998774333354 


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      .|++.+++.++..++.+ ..++.++.+++.+....+           ......+.++|+|.++.+.+..++.........
T Consensus       161 ~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  228 (418)
T TIGR00889       161 QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQITN  228 (418)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHH
Confidence            35555555544444333 333332211111000000           000124457788888887777777766666666


Q ss_pred             HHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          445 TWMPTYYNQVLKFN--------LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       445 ~~~p~~~~~~~g~s--------~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      .++|.|+++ .|.+        ....+...++..+..+++.++.|++.||+++|+.+..+.       .+......++..
T Consensus       229 ~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~-------~~~~v~~~l~~~  300 (418)
T TIGR00889       229 IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL-------VAWALRFGFFAY  300 (418)
T ss_pred             HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH-------HHHHHHHHHHHH
Confidence            788888876 4544        356688889999999999999999999999986543221       111111111221


Q ss_pred             cccc--chHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHH-HHHHHHHHHHHHHhhheecc------CCh
Q 007159          517 SHVR--TPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQR------GSW  586 (615)
Q Consensus       517 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~-~~~~lg~~igp~l~G~l~~~------~g~  586 (615)
                      ....  ..+.. +..++.+.+.....+.......+..+++.+|++.|+.+ ....+|..+||+++|++.|.      .||
T Consensus       301 ~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~  380 (418)
T TIGR00889       301 GDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW  380 (418)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence            1111  12222 22333333333333333444566778899999999997 56789999999999999997      468


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCC
Q 007159          587 DDVFKVAVVLYIIGTLVWNLFATGE  611 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~~~~~  611 (615)
                      +.+|.+.+++.+++.+++.++.+++
T Consensus       381 ~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       381 QTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999988888777777666655543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.95  E-value=3.4e-24  Score=227.33  Aligned_cols=375  Identities=14%  Similarity=0.073  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHH--HHHHHHHHHHHHHhhHH-hhhhcCCchHHHHHHHHH-HH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLI--QSSFFWGYLLTQIVGGI-WADKFGGKPVLGFGVIWW-SV  284 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i--~s~~~l~~~l~~~~~G~-l~Dr~Grk~~l~~~~~l~-~i  284 (615)
                      +..++..++..+.......+.+|.+.++.|.|..++|++  .++..+...+.+|+++. ..||+|||+.+++...+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455666778888888889999999999999999999997  46778888888888855 789999998875555332 22


Q ss_pred             HHHHHH-hhhc-cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          285 ATVLTP-VAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       285 ~~~l~~-~~~~-~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      ...... +... ....+++...++.++..+...+...++..+..++++++...+....+..+|.++|+...+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 1111 11333455556667777888888888988988888888888888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      |..|++.+++.++..+..+...++++++++. ...               ...++++++++|.++...+..++.......
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  226 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA-PLA---------------RRASLFRFFRRPLAWSLLALALLSAMTAVS  226 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-chh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            9999998887766555544443332211110 000               011456678888888888887888777888


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT  521 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i-~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  521 (615)
                      ...+.+.|+++ .|+++++.|.+....+. ..+++.++.|++.||+++++......  ....... ..............
T Consensus       227 ~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~--~~~~~~~-~~~~~~~~~~~~~~  302 (390)
T TIGR02718       227 GFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV--GLAGSLA-LLWFAQAAFWLAPG  302 (390)
T ss_pred             HHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHH-HHHHHHHHcccCCc
Confidence            88899999988 69999999998887764 56677899999999999886543221  0000000 11110000011122


Q ss_pred             hHHHHHHHHHHhhhhhhhhhh-hhhhhhccCc-chhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          522 PAMAVLCMACSQGSDAFSQSG-LYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      .........+.....+...+. .....+..++ +.+|+.+++.+.+.++|..+||.++|++.|..|+...|.+.+++.++
T Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~  382 (390)
T TIGR02718       303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL  382 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            222222222222222233222 2233444555 88999999999999999999999999999999999999988887777


Q ss_pred             HHHH
Q 007159          600 GTLV  603 (615)
Q Consensus       600 ~~l~  603 (615)
                      +.++
T Consensus       383 a~~~  386 (390)
T TIGR02718       383 AILL  386 (390)
T ss_pred             HHHH
Confidence            6543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.3e-24  Score=217.67  Aligned_cols=375  Identities=15%  Similarity=0.167  Sum_probs=281.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      .++.+...+++.++......+.+|.+.+.++++..+++++...++.+|.+.+++.|.+.+|+|+|+.+++|+.+++++..
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44555555666777778888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH-hhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-------
Q 007159          288 LTP-VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------  359 (615)
Q Consensus       288 l~~-~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-------  359 (615)
                      +.. .+...++..++++.++.|.|.+...++.+.++..+.++++....+.+.+...++|.++||++++.++..       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            764 333346788999999999999999999999999999998899999999999999999999999988762       


Q ss_pred             ------------CCchHHHHHHHHHHHHHHHHHHhhh-cCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhH
Q 007159          360 ------------FGWPSVFYSFGSLGSIWFALWLKKA-YSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPV  426 (615)
Q Consensus       360 ------------~gw~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  426 (615)
                                  -.|++.|.+.+....++.+.....+ |+.+..+++..+..               .....+++++|.+
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~---------------~~~~~~l~~~~~~  238 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG---------------SAGLSSLFQNKHL  238 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc---------------cchHHHHHhChHH
Confidence                        2377788777666555554443333 22111111111100               0024567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q 007159          427 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF  506 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~  506 (615)
                      +...+..|++.........|++.|+.+..|++..+.+.+.+.++.+.++|++++.++..|+...|.+..        .++
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf--------~a~  310 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF--------YAL  310 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH--------HHH
Confidence            999999999999999999999999999889999999999999999999999999999999988764321        111


Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          507 LGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       507 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ....++ ......+....+....+++.+...++|.......+..+ ++...+ |..-...-+|+.+-|++.|++.|..|.
T Consensus       311 ~~ill~-~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         311 IAILLL-LAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             HHHHHH-HHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhh
Confidence            111111 11112233444445555555555555555555555555 443333 333455678999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 007159          587 DDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      ...+.....+|.+-.+.+.+..
T Consensus       388 ~~~~~~~pllc~lyV~~~~~~~  409 (422)
T COG0738         388 QLTFLIVPLLCYLYVLFFALIG  409 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            8888866666666654444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=2.6e-24  Score=233.19  Aligned_cols=399  Identities=13%  Similarity=0.069  Sum_probs=264.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHh-h--cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSK-E--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~  285 (615)
                      ..++...++..+..+.+.+.+|.+.+ +  +|++..+.|++.+.+.+++.++++++|+++|| +|||+++.++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            33344455555666666666776654 4  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccc---hhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE---RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      .++.++++  +++.+++.+++.|++.+...+...+++++++|+++   |+.+++++..+.++|.++||++++++.+++||
T Consensus        93 ~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             HHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            99888876  66778889999999999999999999999998654   88899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcC---CCCCCccccHHHHhhhh-------------------cCCccc-----------
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYS---SPKEDPELRAEEKRHIL-------------------GGSISK-----------  409 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------------------~~~~~~-----------  409 (615)
                      ++.|++.++..++..+.+....+.   .++++++.++++.+...                   ......           
T Consensus       171 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999998775544433333322211   11111111111000000                   000000           


Q ss_pred             -------cccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Q 007159          410 -------EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE----SGLFCVLPWLTMAVFAN  478 (615)
Q Consensus       410 -------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~----~g~~~~~~~i~~~ig~~  478 (615)
                             ...+.....+-.+...+..+++..++....+....+.++.+.++..+.+...    .+++.++..+..++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                   0000000001111223344444455555666666677888877754443222    66788888888888777


Q ss_pred             HHHHHHHHhhhccc-----cHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 007159          479 MGGWIADTLVSKGL-----SITAVRKIMQSIGFLGPAFFLTQL---SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDI  550 (615)
Q Consensus       479 l~g~l~dr~g~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (615)
                      +..++..++.+|+.     ........+..++++..++.....   ...+.++++...++.+.+.....+.......+..
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a  410 (475)
T TIGR00924       331 VLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIA  410 (475)
T ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            76665555555311     111111111222222211110000   0223444555566666666666666666667777


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          551 GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       551 ~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      |++.||+.+|+......+|..+++.+.+...+..++...|...++++++..++.++..+.
T Consensus       411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999988787888888888888877777766665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=1.8e-24  Score=260.67  Aligned_cols=361  Identities=16%  Similarity=0.137  Sum_probs=245.5

Q ss_pred             hHHHHhHHHHHhhcCCCc--hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh-ccChHHH
Q 007159          224 VNMSIAILPMSKEFNWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPFL  300 (615)
Q Consensus       224 ~~~~~~~~~i~~~~g~s~--~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~-~~~~~~l  300 (615)
                      .......+.+..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++.++..++..++. ..+++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA  106 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            333444555666666544  4479999999999999999999999999999999998877666655443321 1268889


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC--------C-CchHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------F-GWPSVFYSFGS  371 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~--------~-gw~~~f~~~~~  371 (615)
                      +++|++.|++.+...++..+++.+++++++|++++++...+..+|.++|+++++++.+.        + +|.+.+.+..+
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  186 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL  186 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998875        2 34444444433


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      ...++.+++....++.+............       .........++.+++++.++...+..++..........++|.|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (1146)
T PRK08633        187 AVAVLGLIFAYRLPKVPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYA  259 (1146)
T ss_pred             HHHHHHHHHHhcCcCCCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            33333333323233322221110000000       00000112456677888888877777777777777888999999


Q ss_pred             HHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHH
Q 007159          452 NQVLKFNLT-ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCM  529 (615)
Q Consensus       452 ~~~~g~s~~-~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~  529 (615)
                      .+.+|++.. ..+++++...++.+++.++.+++.||+++++.+..+.         ++.++.++.+......+ .++..+
T Consensus       260 ~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  330 (1146)
T PRK08633        260 KEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA---------LGLALSLFLLPTAPSLASVLVLFF  330 (1146)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH---------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999998 9999999999999999999999999998876543221         11111111111112223 333333


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHH
Q 007159          530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIG  600 (615)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~  600 (615)
                      +++.+......+.........+++.+|+++|+.+++..+|.++++.+++.+... .++...+++.+.+.++.
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            344333333334344455667789999999999999999998888887766542 34555566555544443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=1.9e-25  Score=248.91  Aligned_cols=281  Identities=17%  Similarity=0.221  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      +.+++.++...+........++.+.++|+++..+.|++.+.+.++++++.++.+++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44444666667777888889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhh-------------------------------------------------ccChHHHHHHHHHHHhhhcchhhHHHH
Q 007159          290 PVAA-------------------------------------------------RIGLPFLLIMRAFMGIGEGVAMPAMNN  320 (615)
Q Consensus       290 ~~~~-------------------------------------------------~~~~~~ll~~r~l~G~~~~~~~~~~~~  320 (615)
                      ++.+                                                 +..+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7763                                                 112556789999999999999999999


Q ss_pred             HhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC----------------------CchHHHHHHHHHHHHHHH
Q 007159          321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF----------------------GWPSVFYSFGSLGSIWFA  378 (615)
Q Consensus       321 ~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~----------------------gw~~~f~~~~~~~~~~~~  378 (615)
                      ++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      166678877777766665


Q ss_pred             HHHhhhcCCCCCCcccc--HHHHhhhhc-CCcc-c-----cccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          379 LWLKKAYSSPKEDPELR--AEEKRHILG-GSIS-K-----EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       379 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-~-----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +++...++.|++..+.+  ..+...... .... .     .......++.++++|.++...+..++.....+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544444332211110  000000000 0000 0     0011235677899999999999999999999999999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 007159          450 YYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSK  490 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i-~~~ig~~l~g~l~dr~g~~  490 (615)
                      |+++.+|+++.+++++..+..+ +.+++.+++|++.||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999887776 5688999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.3e-24  Score=208.36  Aligned_cols=373  Identities=13%  Similarity=0.181  Sum_probs=287.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      |..+..+.+..+.---..+..+|.++.+.+++|+|.+.+|++.++..+...+.+++..++..|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33334433433433455566788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-CchH
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPS  364 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-gw~~  364 (615)
                      .++-...   +.+.++..-.+.|.+.+......+.++-+.| +++-+..+|+|.....+|.++++.+...+.++. |||.
T Consensus        91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            9887655   3566888999999999999999999999999 578899999999999999999999999888877 7999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  444 (615)
                      ...+.+...++.+++++....+.........                  ..+-..++++|.-|.+.+.+.+....+|...
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~~~~~~~~------------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~  228 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQAASIATK------------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVI  228 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccc------------------cccccccccCchhHHHHHHHHhhHHHHHHHH
Confidence            9999998888888887765322110000000                  0112337889999999999999999999999


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       445 ~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      .|+|.++.| .|+|..++|.+.++..+..+...++.+.+.+|...++.....      ...+...+++-+.+.....++.
T Consensus       229 ~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~------~~~~~l~G~~G~~~~P~~~~~l  301 (395)
T COG2807         229 GWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL------ALLLMLVGLVGLLLAPGQLPIL  301 (395)
T ss_pred             HHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH------HHHHHHHHHHHHHHhhhhHHHH
Confidence            999999999 599999999999999999999999999999997776644321      1111111121122222233333


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhh-ccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHHHH
Q 007159          525 AVLCMACSQGSDAFSQSGLYSNHQ-DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~~l  602 (615)
                      .  .++++.+.++.++.....+.. ...++..+.-.|+.+.++++-..+||.+.|++.|. ++|...+....+..++..+
T Consensus       302 w--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         302 W--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             H--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            3  355555555555555544443 44568889999999999999999999999999997 6788887777766666555


Q ss_pred             HHHHHhc
Q 007159          603 VWNLFAT  609 (615)
Q Consensus       603 ~~~~~~~  609 (615)
                      .-+...|
T Consensus       380 ~Gl~a~r  386 (395)
T COG2807         380 FGLRAGR  386 (395)
T ss_pred             HHhhcch
Confidence            5444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.3e-26  Score=223.96  Aligned_cols=353  Identities=18%  Similarity=0.119  Sum_probs=270.9

Q ss_pred             HHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhh
Q 007159          231 LPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG  310 (615)
Q Consensus       231 ~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~  310 (615)
                      |.=..+++.+.+++|++++.+.+..++..++.|.+.||+|+|..+++|++++..+++++++..  +++++++.|.++|+|
T Consensus        95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvg  172 (464)
T KOG3764|consen   95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVG  172 (464)
T ss_pred             chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhh
Confidence            333455677889999999999999999999999999999999999999999999999999998  788999999999999


Q ss_pred             hcchhhHHHHHhhhccccc-chhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007159          311 EGVAMPAMNNMLSKWIPVS-ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK  389 (615)
Q Consensus       311 ~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  389 (615)
                      .+...+...++++|.+|++ ||++++|+...+.++|.++||++||.+++..|.+..|++++++.++-..+.+...++.+.
T Consensus       173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            9999999999999999865 579999999999999999999999999999999999999999988877776665544332


Q ss_pred             CCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007159          390 EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP  469 (615)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~  469 (615)
                      ++++..                 +..++.+++++|.++.........+.........++.+..+...-+..+.|+.+...
T Consensus       253 ~~~~~~-----------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~  315 (464)
T KOG3764|consen  253 DPDSTE-----------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPA  315 (464)
T ss_pred             Cccccc-----------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccc
Confidence            221111                 112677789999998888877777777777788899999988886666999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHH--H-HHHhhhhhhhhhhhhh
Q 007159          470 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLC--M-ACSQGSDAFSQSGLYS  545 (615)
Q Consensus       470 ~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~  545 (615)
                      .+...++..+.|.+.||++..+.+       ..+.+++..+++.......+.+. +++-.  . +.+........+....
T Consensus       316 ~~~y~ig~~lfg~la~k~~~~~wl-------~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~  388 (464)
T KOG3764|consen  316 SLSYAIGTNLFGKLADKYPHLRWL-------LSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGY  388 (464)
T ss_pred             ccchhccCchHHHHHHhcCchhHH-------HHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHH
Confidence            999999999999999999954322       22233333333222222222222 11111  1 1111112222222222


Q ss_pred             hhhccCc---chhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          546 NHQDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       546 ~~~~~~~---~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      +.+....   +..|.+.++......+|..+||.++|.+.+..|+.+.....++..++-.-+..+++.
T Consensus       389 lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  389 LVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             hcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222   367999999999999999999999999999999999988888887776655555443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=1.3e-23  Score=219.94  Aligned_cols=324  Identities=13%  Similarity=0.061  Sum_probs=226.4

Q ss_pred             hHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-----CCchH-HHHHHHHHHHHHHHHHhhhc-cC
Q 007159          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKPV-LGFGVIWWSVATVLTPVAAR-IG  296 (615)
Q Consensus       224 ~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-----Grk~~-l~~~~~l~~i~~~l~~~~~~-~~  296 (615)
                      ...++..|.+.+++|+|.+++|+...+ .+...+ .+++|+++||+     ||||. ++.+.++.++..++.++... .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456678899999999999999999755 555555 89999999998     88886 56677777777666666532 24


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC--------chHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG--------WPSVFYS  368 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g--------w~~~f~~  368 (615)
                      .+.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            55677777888898898999999999999999999999999999999999999999999988888        9999998


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhh---HHHHHHHHHHHHHHHHHHHH
Q 007159          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP---VWALIISHFCHNWGTFILLT  445 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~  445 (615)
                      .+++.++..++.+...+++.++++.. +++...           ....++.+++++.   ++.+.+..++.....+....
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASVP-KPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccc-hhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88776665544443333322211111 111000           0114566677665   66666666777777888889


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc-----
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPW-LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-----  519 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~-i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----  519 (615)
                      ++|.|+++ +|++..+.+.+....+ ++.+++.+++|++.||+++|+......  ....+   ............     
T Consensus       231 ~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~  304 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG--IVQAL---TNAGFVWLASNGHHDGI  304 (356)
T ss_pred             HHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHH---HHHHHHHHHhcCccccc
Confidence            99999988 8999999998887666 567899999999999999886533221  11111   111111111111     


Q ss_pred             --cchHHHHHHHHH-HhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 007159          520 --RTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGV  567 (615)
Q Consensus       520 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~  567 (615)
                        +..+....+.++ +.+.............+..|++++|+.+|+.+...+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              222333333333 333344444445556677888999999999887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.93  E-value=1e-23  Score=227.08  Aligned_cols=339  Identities=15%  Similarity=0.133  Sum_probs=229.7

Q ss_pred             hHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh----cCC-chHHHHHHHHHHHHHHHHHhhhccC----hHH
Q 007159          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTPVAARIG----LPF  299 (615)
Q Consensus       229 ~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr----~Gr-k~~l~~~~~l~~i~~~l~~~~~~~~----~~~  299 (615)
                      ..+.+.+++|+++.++|++.++..+..++..|+.|+++||    +|| |+.++.+.+..+++.+++.+.++.+    ...
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4555778899999999999999999999999999999998    677 4467778888888877776665321    345


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcc-cccchhhHHHHHHHHHHHHHHHHhhhHhhhh-------cCCCchHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILI-------QKFGWPSVFYSFGS  371 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~-------~~~gw~~~f~~~~~  371 (615)
                      +++.+++.+++.+...++..++..+.. +++||++..++...+..+|..+++.+.+.+.       +..+|++.+++.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~  181 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL  181 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence            677788889988888888888888887 4688999999988888888877766655544       24689999998888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      +.++..++.....++++++.+..++ +           +......++.++++|.++.+.+..++...+......+.+.|.
T Consensus       182 l~~~~~~~~~~~~~e~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (437)
T TIGR00792       182 IGVVSLIICFFGTKERYSEIPKNIE-K-----------KLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF  249 (437)
T ss_pred             HHHHHHHHHHcCCEecCCCCCcccc-c-----------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE
Confidence            8777666555444443321111000 0           000112456778899988888877777777666666666666


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC  531 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  531 (615)
                      +..++ +....+.+..+..++.+++.++.+++.||+++|+....+.       .+.............+.....+...+.
T Consensus       250 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (437)
T TIGR00792       250 TYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGI-------LLMVLGYLIFFFAGSNLPLILVLIILA  321 (437)
T ss_pred             eeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH-------HHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            65555 4566677777788899999999999999999886543221       111111111111111222222222222


Q ss_pred             Hhhhhhhhhhhhhhhhhcc-------CcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChh
Q 007159          532 SQGSDAFSQSGLYSNHQDI-------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD  587 (615)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~  587 (615)
                      +.+.............+..       +++.+|.+.|+.+.+..+|..+++.+.|++.+..||.
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            2322222222222222222       3567899999999999999999999999999876663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=2.2e-22  Score=218.25  Aligned_cols=401  Identities=15%  Similarity=0.143  Sum_probs=250.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhH-HHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAI-LPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWS  283 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~  283 (615)
                      ++.+..++...+...+..+.+...+ ..+.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            3444444444455555555555444 44577899999999999999998899999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhccccc--chhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g  361 (615)
                      ++.++++++.+. ...+++.|+++|+|.|...+...+++.|.+|++  +|+++++++..+.++|.++||.+++++.+++|
T Consensus        93 ~g~~~~~~~~~~-~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         93 IGYFMTGMSLLK-PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHhccc-hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999998887621 334557899999999999999999999999876  45778999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhcCCCCC--CccccHHHHhhh----------------hcCCccccc------------
Q 007159          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKE--DPELRAEEKRHI----------------LGGSISKEA------------  411 (615)
Q Consensus       362 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------~~~~~~~~~------------  411 (615)
                      ||+.|++.++...+..+.+....+..++.  +++..+.+....                .........            
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999986543332222222211111010  010000000000                000000000            


Q ss_pred             ---cccccHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHHHHHH
Q 007159          412 ---VSVIPWKLILSKAPVWALIIS--HFCHNWGTFILLTWMPTYYNQVLKFNLT----ESGLFCVLPWLTMAVFANMGGW  482 (615)
Q Consensus       412 ---~~~~~~~~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~p~~~~~~~g~s~~----~~g~~~~~~~i~~~ig~~l~g~  482 (615)
                         .......+..|+|.+....+.  ..+....+....+.++.|.++..+.+..    ..+.+..+..+..++..++.++
T Consensus       252 ~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~  331 (489)
T PRK10207        252 IFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAG  331 (489)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHH
Confidence               000000123444444333222  2333344444556778887753332110    1233444455666677888899


Q ss_pred             HHHHhhhcccc-----HHHHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc
Q 007159          483 IADTLVSKGLS-----ITAVRKIMQSIGFLGPAFFLTQLS----HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR  553 (615)
Q Consensus       483 l~dr~g~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (615)
                      +.||+++|+.-     .......+..++++..+.......    ..+.++.+...++.+.+.....++.........|++
T Consensus       332 l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~  411 (489)
T PRK10207        332 IYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH  411 (489)
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence            99999988631     111111222222221111111111    112334444555666666666666677777888999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhheec----------cCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          554 YAGVLLGLSNTAGVLAGVFGTAATGYILQ----------RGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       554 ~~g~~~gl~~~~~~lg~~igp~l~G~l~~----------~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .+|.++|+.++...+|+.+|..+.+....          ...+...|...++..+++.+++++.
T Consensus       412 ~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        412 LMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988876531          1135677777776666655555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=1.6e-22  Score=209.62  Aligned_cols=371  Identities=12%  Similarity=0.093  Sum_probs=254.8

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchh-hHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHH
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTT-VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF  299 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~-~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~  299 (615)
                      -.+...+.+.|.+.+++|++..+ .|.+.+++..+|++++++.|.++||+|.|+++.++.+.+++..+++++++  ++..
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~  117 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWH  117 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            56777888999999999999999 99999999999999999999999999999999999999999999999998  7889


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHH--HHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG--SLGSIWF  377 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~--~~~~~~~  377 (615)
                      +.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++++ ...+|||+-+.+.-  .....+.
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999 45689997654321  1111222


Q ss_pred             HHHHhhhcCCCCC-----Cc--c-ccHHH-Hhh-hhcC-Cccccc---------cccccHHHHhhhhhHHHHHHHHHHHH
Q 007159          378 ALWLKKAYSSPKE-----DP--E-LRAEE-KRH-ILGG-SISKEA---------VSVIPWKLILSKAPVWALIISHFCHN  437 (615)
Q Consensus       378 ~~~~~~~~~~~~~-----~~--~-~~~~~-~~~-~~~~-~~~~~~---------~~~~~~~~l~~~~~~~~~~l~~~~~~  437 (615)
                      +++.+..|.+++.     ++  + ....+ ... ..+. ...+..         .-...++...+++.+....+-..+..
T Consensus       196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            2222222222110     00  0 00000 000 0000 000000         01223455567788777777777778


Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhc
Q 007159          438 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS  517 (615)
Q Consensus       438 ~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  517 (615)
                      .+++.+.+|......+.-+-.....|.+-++..+.+.+..+..|++-.+..+.       ..+.+.+..++.+.+++.+.
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~  348 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS  348 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence            88888888888887765332223567777888888888899999885544222       12334444445555566666


Q ss_pred             cccchHHHHHHHHHHhhhhh-hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHh----hheecc----CChhH
Q 007159          518 HVRTPAMAVLCMACSQGSDA-FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT----GYILQR----GSWDD  588 (615)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~----G~l~~~----~g~~~  588 (615)
                      ..++.++..++.++...... ..+.....++.....+..|..+|+++++..+-..+-..+.    |.=.+.    .=|..
T Consensus       349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~  428 (511)
T TIGR00806       349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSV  428 (511)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhh
Confidence            77777776666555554444 4444445567777788889999998887766665555433    221111    12344


Q ss_pred             HHHHHHHHHHHHHH
Q 007159          589 VFKVAVVLYIIGTL  602 (615)
Q Consensus       589 ~f~~~~~~~l~~~l  602 (615)
                      -|.+.++++++..+
T Consensus       429 yf~~~~~i~~~~~~  442 (511)
T TIGR00806       429 YFLVLSIICFFGAG  442 (511)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=200.34  Aligned_cols=358  Identities=18%  Similarity=0.110  Sum_probs=221.9

Q ss_pred             HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhc
Q 007159          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG  312 (615)
Q Consensus       233 i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~  312 (615)
                      ..+..+.+..-.|++.+.|.+..++.++.+|.++||+|||++++++++..++..++.+.+.  ++..+++.|++.|+..+
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~kg  136 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFKG  136 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccC
Confidence            3344445667789999999999999999999999999999999999999999999999988  78667777999999988


Q ss_pred             chhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc---CCCch-HHH--HHHHHHHHH-HHHHHHhhhc
Q 007159          313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ---KFGWP-SVF--YSFGSLGSI-WFALWLKKAY  385 (615)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~---~~gw~-~~f--~~~~~~~~~-~~~~~~~~~~  385 (615)
                      -. ....++++|.+++|+|+++++.+....++|.++||.+||++.+   ..|-- ..+  ++..++... ...+.++..+
T Consensus       137 nl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  137 NL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             ch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            65 7888999999999999999999999999999999999999987   33311 111  111112221 1222222222


Q ss_pred             CCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007159          386 SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVW-------ALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (615)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s  458 (615)
                      ..+.++...+..+..+..+...+-...+...--..+++++..       .+.+..+.+...+..+..+.+.+..+.+|++
T Consensus       216 TL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~s  295 (451)
T KOG2615|consen  216 TLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYS  295 (451)
T ss_pred             cccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCC
Confidence            222221110000000000000000000000011123333221       2223333333334444444444445678999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhh
Q 007159          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF  538 (615)
Q Consensus       459 ~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  538 (615)
                      +.+.|.+++..++.+.+.........+|.+..   ..  ......+.++...+.+  ......+..+.....+-.+....
T Consensus       296 s~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~---~~--a~l~~~l~~~vP~~ll--ls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  296 SMQQGKVLSTTGLLMLVIQLALVPILPRYKGN---IK--AVLLFSLLLIVPAFLL--LSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             hhhheeeeehhhHHHHHHHHhccccccccccc---hh--hHHHHHHHHHHHHHHH--HhccccchhhhHHHHHHHHHHHH
Confidence            99999999888888888777666666665411   10  1122222233333333  33334444444444444444444


Q ss_pred             hhhhhhhhhh-ccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHH
Q 007159          539 SQSGLYSNHQ-DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIG  600 (615)
Q Consensus       539 ~~~~~~~~~~-~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~  600 (615)
                      ..+....... ..++++||++.|+....+.++-++||++.|.+..+ .+-+..+...+.+.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            4555555444 45569999999999999999999999999999876 34444544444444444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.91  E-value=7.5e-21  Score=200.16  Aligned_cols=370  Identities=13%  Similarity=0.156  Sum_probs=255.5

Q ss_pred             HHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcC-CchHHHHHHHHHHHHHHHHHhhh
Q 007159          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-GKPVLGFGVIWWSVATVLTPVAA  293 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~G-rk~~l~~~~~l~~i~~~l~~~~~  293 (615)
                      .+++.+.....+.|..+.+.++.|+|..|+|++.++..+..++.++++|.++||++ +|+++.+..++.++..++....+
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~   89 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444555566778889999999999999999999999999999999999999986 57777777777766666666655


Q ss_pred             ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhh-HhhhhcCCC---chHHHHHH
Q 007159          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV-SPILIQKFG---WPSVFYSF  369 (615)
Q Consensus       294 ~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l-~~~l~~~~g---w~~~f~~~  369 (615)
                        +++.+++..++..+......|...++..+...  +++...|-....+++|.+++... ++.+....+   ..+.+++.
T Consensus        90 --~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~  165 (400)
T PF03825_consen   90 --SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIA  165 (400)
T ss_pred             --cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence              67778888888888888888999999888874  55667788888888888887554 233333333   23455555


Q ss_pred             HHHHHHHHHHHHhhhcCCCC-CCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          370 GSLGSIWFALWLKKAYSSPK-EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      +++.++.....+.. ++.|. ++.+...++.             ...+...++|+|+++.+.+..++.........++.+
T Consensus       166 ~~~~~ll~~~~l~l-p~~~~~~~~~~~~~~~-------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~  231 (400)
T PF03825_consen  166 AILSLLLAGFALFL-PKTPPKRSAKESVKKL-------------LGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFS  231 (400)
T ss_pred             HHHHHHHHHHHHhC-CCCccccccCCCcccc-------------cchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444433333332 33221 1111110000             011234578999999988888888888999999999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH--VRTPAMAV  526 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~  526 (615)
                      .|+++.-|.+....+.++++..+..++.....+++.+|++.++.+.         ++.+..++=......  .+.+....
T Consensus       232 ~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~---------~a~~~~~vR~~l~a~~~~~~~~~~~  302 (400)
T PF03825_consen  232 IYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLL---------LALVAYAVRWLLYAYFSDPWPFIVA  302 (400)
T ss_pred             HHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH---------HHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            9999854478888898888999999999999999999999884332         333333332222222  22222222


Q ss_pred             HH----HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHH-HHHHHHHHHHHhhheeccCChh------HHHHHHHH
Q 007159          527 LC----MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTA-GVLAGVFGTAATGYILQRGSWD------DVFKVAVV  595 (615)
Q Consensus       527 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~-~~lg~~igp~l~G~l~~~~g~~------~~f~~~~~  595 (615)
                      ..    ...+..+............+..|++.++++.++++.. .++|..+|..++|+++|..|.+      ..+.+.++
T Consensus       303 ~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~  382 (400)
T PF03825_consen  303 LQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAV  382 (400)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence            22    2244455555555566667778889999999998876 5899999999999999987655      45556666


Q ss_pred             HHHHHHHHHHHHhcCC
Q 007159          596 LYIIGTLVWNLFATGE  611 (615)
Q Consensus       596 ~~l~~~l~~~~~~~~~  611 (615)
                      +.++..+++.++.|++
T Consensus       383 ~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  383 MALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhhccCC
Confidence            6666666655554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=6.1e-21  Score=205.91  Aligned_cols=354  Identities=14%  Similarity=0.152  Sum_probs=239.2

Q ss_pred             HHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccCh
Q 007159          218 LCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL  297 (615)
Q Consensus       218 ~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~  297 (615)
                      ..++.....+..++.+..++|-+ ....|+.+...++..+..++.|+++|.||||.+++.+.++..+|.++++-++  +.
T Consensus        55 ~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--~~  131 (599)
T PF06609_consen   55 AAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--NM  131 (599)
T ss_pred             HHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--cH
Confidence            33444444456678899999954 6788999999999999999999999999999999999999999999999998  77


Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHH
Q 007159          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWF  377 (615)
Q Consensus       298 ~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  377 (615)
                      ..++++..+.|+|.|... .....++|..|.|.|+...++......+...++|.++..+..+.+|||.|++.+++..+.+
T Consensus       132 ~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            889999999999977765 4556689999999998888777766666666788888777777899999999888766655


Q ss_pred             HHHHhhhcCCCCCC---ccccHHH-Hhh-h-------------------hcCCc-cc-----------------------
Q 007159          378 ALWLKKAYSSPKED---PELRAEE-KRH-I-------------------LGGSI-SK-----------------------  409 (615)
Q Consensus       378 ~~~~~~~~~~~~~~---~~~~~~~-~~~-~-------------------~~~~~-~~-----------------------  409 (615)
                      ++.++...+++.++   ++....+ .++ +                   +++.. .+                       
T Consensus       211 vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~w  290 (599)
T PF06609_consen  211 VLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVW  290 (599)
T ss_pred             HHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHh
Confidence            44433333222111   1111111 111 0                   01110 00                       


Q ss_pred             ----cccc-cccHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHH
Q 007159          410 ----EAVS-VIPWKLILSK-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFANMG  480 (615)
Q Consensus       410 ----~~~~-~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~---~~g~~~~~~~i~~~ig~~l~  480 (615)
                          .+++ ..|++ ++++ +.+...++..++....++....++|......++-++.   ..++.....+++..++.++.
T Consensus       291 E~~~~~~~Pl~P~~-Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~  369 (599)
T PF06609_consen  291 EWFGAPKDPLFPHR-LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL  369 (599)
T ss_pred             hhhccCCCCcCCHH-HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH
Confidence                0111 23333 5565 4566656677777777788888889988887776653   56777778888888999999


Q ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHH
Q 007159          481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL  559 (615)
Q Consensus       481 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  559 (615)
                      |.+..++++.|..+..      ...+....+..+.....++. ......++.+.+.+....+......-..+++..|++.
T Consensus       370 g~l~~~ir~~Kw~li~------~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~  443 (599)
T PF06609_consen  370 GLLFSKIRHIKWQLIF------GSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTAT  443 (599)
T ss_pred             HHHHHHccchhHHHHH------HHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHH
Confidence            9999888765533211      11111111122222222222 2223333334444444444444444456779999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhheec
Q 007159          560 GLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       560 gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                      |+..++..+|+.+|..+..-+..
T Consensus       444 gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  444 GLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999998877664

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=1.9e-20  Score=204.32  Aligned_cols=389  Identities=16%  Similarity=0.131  Sum_probs=234.4

Q ss_pred             HHHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHHHHHH
Q 007159          212 CFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      +++..++..+..+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            334444444454445555444 568899999999999888877767777899999999 599999999999999998888


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccc--hhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      +++.+ +.+.+++.++++|++.|...+...+++.+++|+++  +..++++++.+.++|.++||.+++++.+++|||+.|+
T Consensus       106 ~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        106 AWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence            87642 35567788999999999999999999999997543  4567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH---HhhhcCCCCCCc-c-ccHHHHhh--------------hhcCCcccc------------c--ccc
Q 007159          368 SFGSLGSIWFALW---LKKAYSSPKEDP-E-LRAEEKRH--------------ILGGSISKE------------A--VSV  414 (615)
Q Consensus       368 ~~~~~~~~~~~~~---~~~~~~~~~~~~-~-~~~~~~~~--------------~~~~~~~~~------------~--~~~  414 (615)
                      +.++..++..+.+   ....++..++.+ + .+......              .........            .  ...
T Consensus       185 i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (500)
T PRK09584        185 LSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA  264 (500)
T ss_pred             HHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            8765443332222   222222111110 0 00000000              000000000            0  000


Q ss_pred             ccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          415 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ--VLKFNL------TESGLFCVLPWLTMAVFANMGGWIADT  486 (615)
Q Consensus       415 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~--~~g~s~------~~~g~~~~~~~i~~~ig~~l~g~l~dr  486 (615)
                      ...+..- +++.+..++ .++....++......|.++..  ..+.+.      ...+++.++..+..++..++.+++-+|
T Consensus       265 ~~~~~~~-~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~  342 (500)
T PRK09584        265 FAMKGAA-RRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNK  342 (500)
T ss_pred             hhcCHHH-HHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            0000111 122222222 223334445555555555442  111211      125566667777777777777777777


Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHH
Q 007159          487 LVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH--------VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL  558 (615)
Q Consensus       487 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  558 (615)
                      .++|....   .+..+.+.+...++.......        .+.++.....++.+.+.....+.......+..|++.||++
T Consensus       343 l~~r~~~~---~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~  419 (500)
T PRK09584        343 MGDRLPMP---HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI  419 (500)
T ss_pred             hCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence            76553221   112222222222222211111        1233555566666667666677776777778889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhheec----------cCChhHHHHHHHHHHHHHHHHHHH
Q 007159          559 LGLSNTAGVLAGVFGTAATGYILQ----------RGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       559 ~gl~~~~~~lg~~igp~l~G~l~~----------~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      +|+......+|..++..+.+....          ..++...|...++++++..+++++
T Consensus       420 ~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        420 MGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            998887777777777666653221          124778888877776655544444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=5.6e-20  Score=193.72  Aligned_cols=365  Identities=15%  Similarity=0.132  Sum_probs=249.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhc-cChHHHHHHHHHHHhhhcchhhHHHHHh
Q 007159          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNML  322 (615)
Q Consensus       244 ~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~-~~~~~ll~~r~l~G~~~~~~~~~~~~~i  322 (615)
                      .+.+.+++.+|.++|++..|+++||+|||..+.+..++..++.++..++.. .++.+++++|++.|+..+.......-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            466788999999999999999999999999999999888888877665542 2578899999999999999999999999


Q ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHhhhHh-hhh-cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCC-----Ccccc
Q 007159          323 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP-ILI-QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELR  395 (615)
Q Consensus       323 ~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~-~l~-~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  395 (615)
                      .|..|.+-||..-.+...+..+|..+|..++. .+. +.-.|++.+....+.+++..+++.+. |+.|+-     +++.+
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~-PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFL-PESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHcCCHHH
Confidence            99999999999999999999999999966653 333 34569998887777666655554443 333321     11100


Q ss_pred             HHHHhhhh-cC---------------CccccccccccHHHHhhhhhHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHH
Q 007159          396 AEEKRHIL-GG---------------SISKEAVSVIPWKLILSKAPVWALII----SHFCH-NWGTFILLTWMPTYYNQV  454 (615)
Q Consensus       396 ~~~~~~~~-~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~l----~~~~~-~~~~~~~~~~~p~~~~~~  454 (615)
                      .++..+.. +.               .......+..+++++++++....-..    ..+.. ..+......|...++++ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-  299 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-  299 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence            00000000 00               00011123456778887765443322    22222 22334455555566665 


Q ss_pred             hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc-cch-HHHHHHH--H
Q 007159          455 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-RTP-AMAVLCM--A  530 (615)
Q Consensus       455 ~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~--~  530 (615)
                      .|++..++.+.....++...+..+++.++.||+|||++++.+....  .+..+.+.+........ ... +..+++.  .
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~--~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM--AVALLLMSIALFLSNSFGSWLSYLCIAAIFLF  377 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999998776554222  22222222222222211 111 1122222  2


Q ss_pred             HHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      ......+..+.......+.++++.|+.+.++......+..++-....-.+.+..|. ..|+...+.+++..+..+...++
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE  456 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE  456 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence            22333445566667778888999999999999999999999999999888888776 67777777777777666666555


Q ss_pred             Ccc
Q 007159          611 ERV  613 (615)
Q Consensus       611 ~k~  613 (615)
                      .|.
T Consensus       457 Tkg  459 (485)
T KOG0569|consen  457 TKG  459 (485)
T ss_pred             cCC
Confidence            553

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.90  E-value=6.6e-21  Score=196.98  Aligned_cols=381  Identities=13%  Similarity=0.076  Sum_probs=245.6

Q ss_pred             HHHHHHHhhhhhHHHHhHHHHHh-hcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH--HHHH-HH
Q 007159          213 FSAFLLCNMDRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW--SVAT-VL  288 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~-~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~--~i~~-~l  288 (615)
                      ...++..++......+..+...+ +.|+|.+++|.+.++..+..++.+|+.|.++||+|.||-++....+.  ..+. +.
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~   92 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI   92 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444556667777777655 58999999999999999999999999999999999766544333222  2222 22


Q ss_pred             HHhhh--ccCh-HHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          289 TPVAA--RIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       289 ~~~~~--~~~~-~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      ..+.+  +.|+ ...+++.+..|+......|...+++.++.  ++.+.-.|-....+++|.+++..++|.+.+ .+-...
T Consensus        93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~  169 (412)
T PF01306_consen   93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNII  169 (412)
T ss_dssp             HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHH
Confidence            12221  1133 22333334445556666677777777764  556777888999999999999999999987 456777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007159          366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT  445 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  445 (615)
                      ||+.....++..++.+..+++.+++.+..+...        .++++.+.+...+++|+|++|.+.+........+..+..
T Consensus       170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdq  241 (412)
T PF01306_consen  170 FWIASAAAIILLLLLLLLKPDVPPQAEVADALG--------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQ  241 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS--------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc--------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            887665555554444444433222211110000        001111123456788999999998887777777777777


Q ss_pred             HHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          446 WMPTYYNQVL---KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       446 ~~p~~~~~~~---g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      .+|.|+...+   +.+....|.+.++..+..++...+.+++.+|+|.|+.++         ++..++.+=.......+.+
T Consensus       242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll---------lag~i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL---------LAGVIMAIRIIGSGFATNP  312 (412)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHT--SH
T ss_pred             HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH---------HHHHHHHHHHHHHhhhcch
Confidence            7888887532   234466889999999999999999999999999996433         2223333333444445555


Q ss_pred             HHHHHHHHHHhhhhhhh-hhhhhhhhhccCcchhhHHHHHH-HHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHH
Q 007159          523 AMAVLCMACSQGSDAFS-QSGLYSNHQDIGPRYAGVLLGLS-NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG  600 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~gl~-~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~  600 (615)
                      +.+...-.+-+....+. ....-.+.+..+++..++...+. +...++|..+.+.++|.+.|+.|++.+|++++.+.++.
T Consensus       313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~  392 (412)
T PF01306_consen  313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPF  392 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHH
Confidence            55555444444444443 34444566677788888999885 67789999999999999999999999999999888877


Q ss_pred             HHHHHHHhcCCcc
Q 007159          601 TLVWNLFATGERV  613 (615)
Q Consensus       601 ~l~~~~~~~~~k~  613 (615)
                      .++..+..+++++
T Consensus       393 ~li~~f~l~~~~~  405 (412)
T PF01306_consen  393 TLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHS--SSS
T ss_pred             HHHheeeecCCCc
Confidence            7776665555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=4e-20  Score=202.99  Aligned_cols=383  Identities=16%  Similarity=0.108  Sum_probs=241.5

Q ss_pred             HHHHHHHhhh--hhHHHHhHHHHHhhc-----CCCc--hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          213 FSAFLLCNMD--RVNMSIAILPMSKEF-----NWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       213 ~~~~~~~~~~--~~~~~~~~~~i~~~~-----g~s~--~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      .+..+..+.+  ....++....+.+..     ..+.  .+.+++.+.+.++..++++++|+++|++|||+.++++.+++.
T Consensus        51 ~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~  130 (513)
T KOG0254|consen   51 ALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL  130 (513)
T ss_pred             HHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333444443  334445555555432     2222  345899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-CCc
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGW  362 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-~gw  362 (615)
                      ++.++++++.  ++++++++|++.|+|.|........+++|..|++.||...+..+....+|..++..++....+. .+|
T Consensus       131 iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~W  208 (513)
T KOG0254|consen  131 IGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGW  208 (513)
T ss_pred             HHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccH
Confidence            9999999999  8999999999999999999999999999999999999999999999999999995555444332 489


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc-ccHHHHh----hhhc--CCcc-cc--------------ccccccHHHH
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPE-LRAEEKR----HILG--GSIS-KE--------------AVSVIPWKLI  420 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~--~~~~-~~--------------~~~~~~~~~l  420 (615)
                      |..+.+..+.+++..+. +...++.|..--+ .+.++.+    ...+  .... .+              ......++++
T Consensus       209 r~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (513)
T KOG0254|consen  209 RIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL  287 (513)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence            98888777776666666 4444444322111 0111100    0000  0000 00              0000012222


Q ss_pred             hh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHH
Q 007159          421 LS----KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITA  496 (615)
Q Consensus       421 ~~----~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~  496 (615)
                      +.    ++.++.+.+..+....+......|.+.+++. .|.+... .....+.++...++..++.++.||+|||+.++.+
T Consensus       288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s  365 (513)
T KOG0254|consen  288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFG  365 (513)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Confidence            22    2233444444555555566667788888776 4666443 4444556666777777889999999999877765


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc-----ccchHHHH--HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 007159          497 VRKIMQSIGFLGPAFFLTQLSH-----VRTPAMAV--LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA  569 (615)
Q Consensus       497 ~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg  569 (615)
                      ..  ...++.++.+........     ....++.+  .++.......+..+.......+..|.+.|+.+.++......+.
T Consensus       366 ~~--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  366 AA--GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HH--HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            42  223333333322222111     11122222  2223333333344444445566677799999999999888887


Q ss_pred             HHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          570 GVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       570 ~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      ..+-....-.+.+..+....|...+.++.+..+
T Consensus       444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            777666665665554434455555555544444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.88  E-value=5.9e-19  Score=189.30  Aligned_cols=359  Identities=16%  Similarity=0.099  Sum_probs=260.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHH-HHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHH
Q 007159          243 TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM  321 (615)
Q Consensus       243 ~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~-~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~  321 (615)
                      ..++..++..+..++..|+.|.++|+-++||.++ +..++..++.+++.+.+..+++..+++-++.-++.+......+++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999988766554 444555556666666543356666666677777888888999999


Q ss_pred             hhhcccccch--------------------------hhHHHHHHHHHHHHHHHHhhhHhhhhcC--------CCchHHHH
Q 007159          322 LSKWIPVSER--------------------------SRSLAFVYSGMYLGSVTGLAVSPILIQK--------FGWPSVFY  367 (615)
Q Consensus       322 i~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~ig~~l~~~l~~~--------~gw~~~f~  367 (615)
                      +.++.+++++                          ++..+.-.+.+++|.++.-++.-.+...        .+.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          8888888888889888877765544321        23477888


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCC-CccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKE-DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTW  446 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~  446 (615)
                      +.++.-++..+.+++..++.+.. ..+..........       ..-...+|++.+.|.+..+++..+++.-+...+...
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-------~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~  303 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-------KRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF  303 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666666666655441 1111111100000       001124566778888999999999999999999999


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccHHHHHHHHHHHHHHHHHHHHH-----Hhccc
Q 007159          447 MPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLSITAVRKIMQSIGFLGPAFFLT-----QLSHV  519 (615)
Q Consensus       447 ~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~  519 (615)
                      ...|.++++|++..+...+..+..+.+++|.+++|++.||+|.|  +.+...+     ....++....++     .....
T Consensus       304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l-----~~~~~i~~~g~~G~~~~~~g~~  378 (477)
T PF11700_consen  304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL-----ILWIIIPLYGLFGFWPSFFGLK  378 (477)
T ss_pred             HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH-----HHHHHHHHHHHHHhhhcccCcc
Confidence            99999999999999999999999999999999999999999998  4433221     111111111111     11123


Q ss_pred             cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccC-ChhHHHHHHHHHHH
Q 007159          520 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYI  598 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~-g~~~~f~~~~~~~l  598 (615)
                      +...+.+..++.+.+.++.....-..+.+..|+++.+..+|++.+.......+||++.|.+.+.. +.+..+....++.+
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~  458 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL  458 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            33444555555555655666666666788889999999999999999999999999999999985 48899999999999


Q ss_pred             HHHHHHHHHhcCCcc
Q 007159          599 IGTLVWNLFATGERV  613 (615)
Q Consensus       599 ~~~l~~~~~~~~~k~  613 (615)
                      +++++...+..++.+
T Consensus       459 ~gl~ll~~v~~~~g~  473 (477)
T PF11700_consen  459 IGLILLFFVDVEKGR  473 (477)
T ss_pred             HHHHHHhhccchhhh
Confidence            998888776555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.88  E-value=6.7e-22  Score=187.14  Aligned_cols=389  Identities=14%  Similarity=0.131  Sum_probs=257.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIW  281 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l  281 (615)
                      .+|...++..++..|-+++..-..+.....+..+.+++.++..++.++|.+...+..+++|++.|| +|.|..-++-+++
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            345566666666666677776666666777888889999999999999999999999999999997 6877766666666


Q ss_pred             HHHHHHHHHh---hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc
Q 007159          282 WSVATVLTPV---AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (615)
Q Consensus       282 ~~i~~~l~~~---~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~  358 (615)
                      ..++.++++.   .+  .+|.+++.|++.|+|.-..-.+-+.++..|+..||.+.++|+......+|..+--.+.+++.+
T Consensus       120 v~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            6666665543   33  689999999999999888888999999999999999999999999999999887777777776


Q ss_pred             CCCc------hH---HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHH
Q 007159          359 KFGW------PS---VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWAL  429 (615)
Q Consensus       359 ~~gw------~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  429 (615)
                      ..+-      ..   ..+.++......-++.....--..+..++.-..+     ++...+++ +..+.+  --.|++|.+
T Consensus       198 ~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e-----~g~~Ge~p-kLtdv~--~f~ppfw~~  269 (459)
T KOG4686|consen  198 TMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLE-----EGFLGEEP-KLTDVN--TFYPPFWVL  269 (459)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh-----cCcccCCc-cccccc--ccCccHHHH
Confidence            4320      00   0111111111111111110000000000000000     00000000 000111  125789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 007159          430 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP  509 (615)
Q Consensus       430 ~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  509 (615)
                      .+..+++..+.+.+.+.-|.++++.+|+|+..++.+.+.......+.+++.|.++||.|++-..+..      .....+.
T Consensus       270 ~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~------a~~~tl~  343 (459)
T KOG4686|consen  270 VIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS------ACILTLL  343 (459)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH------HHHHHHH
Confidence            9999999999999999999999999999999999999988888999999999999999988432211      0111111


Q ss_pred             HHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC-hh-
Q 007159          510 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WD-  587 (615)
Q Consensus       510 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g-~~-  587 (615)
                      +-..+.+.. -+++..  ..+++..........+..+...+|.++.|++.|..+.+.++|-.+.|+++|.+.|.-| |. 
T Consensus       344 ~H~~l~Ft~-lsPy~~--m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  344 GHSGLFFTF-LSPYTS--MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             HhhhHHhhh-ccHHHH--HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            111111111 222222  2223333333333334445556677899999999999999999999999999999743 43 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhcC
Q 007159          588 --DVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       588 --~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                        ..|+..+.+.+....+.+.+.++
T Consensus       421 le~ffl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  421 LEAFFLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHhheecc
Confidence              34555566666665555555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=1.8e-19  Score=176.92  Aligned_cols=389  Identities=16%  Similarity=0.164  Sum_probs=239.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      .|..............+.....+...|......|.+..+..++......+..+++..+|.++|++|||+...+..+..++
T Consensus        76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v  155 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGV  155 (528)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHH
Confidence            35555554444444445555556667778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      ..++...++  ++..+.+.|.+.|+|.|. .|...++-.+..|..+|..-+-.. ..+.+|.++...+.-.+..++||||
T Consensus       156 ~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~  231 (528)
T KOG0253|consen  156 FGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY  231 (528)
T ss_pred             HHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            888888888  788899999999999999 888889999999988888766666 8889999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCc-cccHHH----Hhhh---------------------------hcCCcccc-c
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEE----KRHI---------------------------LGGSISKE-A  411 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~---------------------------~~~~~~~~-~  411 (615)
                      .....+....+.+. +++..++.++-.- +.++.+    .+++                           ..+.+.+. .
T Consensus       232 ~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k  310 (528)
T KOG0253|consen  232 LLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK  310 (528)
T ss_pred             HHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence            88776644433333 3333333332110 000000    0000                           00000000 0


Q ss_pred             cccccHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hC--CChhHHHHHHHHH
Q 007159          412 VSVIPWKLILSK---APVWALIISHFCHNWGTFILLTWMPTYYNQV-----------------LK--FNLTESGLFCVLP  469 (615)
Q Consensus       412 ~~~~~~~~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~-----------------~g--~s~~~~g~~~~~~  469 (615)
                      ........++..   +..+.++...|...+.+++........++..                 .+  .+...--.=..+.
T Consensus       311 e~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit  390 (528)
T KOG0253|consen  311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT  390 (528)
T ss_pred             ccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence            111122222221   1222333333433444444333333332221                 11  1111111122345


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 007159          470 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL-SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ  548 (615)
Q Consensus       470 ~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (615)
                      .+....|.++.+++.||+|||+.+.         +.++..+++++.+ .........+..+..-.+..+.+........+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMa---------l~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPE  461 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMA---------LSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPE  461 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHH---------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCc
Confidence            6777889999999999999996432         2222222222221 22222222222232233333333333333444


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          549 DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       549 ~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      ..|...|+++.|....+..+|+++.|.++ ...+ .+......+.+++++++.++..++.-
T Consensus       462 VyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  462 VYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             ccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeeee
Confidence            45568999999999999999999999998 4444 34444555566666666666555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.87  E-value=5.7e-19  Score=188.28  Aligned_cols=396  Identities=14%  Similarity=0.069  Sum_probs=252.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhh----hcCCchHHHHH-HH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGGKPVLGFG-VI  280 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D----r~Grk~~l~~~-~~  280 (615)
                      |+++.+++...-+ .+......+.++++.+++|.+....+++..+..+..++.+|+.|.++|    |+|||+.++++ .+
T Consensus         4 ~~li~~~~~~~Gi-q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLLRVASVAAGV-QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            4555544444333 455666677777788999999999999999999999999999999999    59999988774 66


Q ss_pred             HHHHHHHHHHhhhccC---------------hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccch--hhHHHHHHHHHH
Q 007159          281 WWSVATVLTPVAARIG---------------LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER--SRSLAFVYSGMY  343 (615)
Q Consensus       281 l~~i~~~l~~~~~~~~---------------~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~  343 (615)
                      ...++.++++++.+..               .+..+++-.+..++.....++..++++|..|+++|  +.++++.+....
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence            6666667776655210               02233333445567788888999999999998765  579999999999


Q ss_pred             HHHHHHhhhHhhh--hcCC-------------CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCcc
Q 007159          344 LGSVTGLAVSPIL--IQKF-------------GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSIS  408 (615)
Q Consensus       344 lG~~ig~~l~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (615)
                      +|.++|+.++++.  .+.+             +.++.|++.+++.++..++.....++.+...++...+++.+..+    
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~----  238 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPS----  238 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccccc----
Confidence            9999999999865  2211             56888988777777766666665555433211111000000000    


Q ss_pred             ccccccccHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChh------H----HHHHHHHHHHH
Q 007159          409 KEAVSVIPWKLILS-----KAPVWALIISHFCHNWGTFILLTWMPTYYN-QVLKFNLT------E----SGLFCVLPWLT  472 (615)
Q Consensus       409 ~~~~~~~~~~~l~~-----~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~-~~~g~s~~------~----~g~~~~~~~i~  472 (615)
                       +......++++++     .+.++.+++..++..++.+.+..|...|+. +.++-++.      +    ..+......+.
T Consensus       239 -~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~  317 (477)
T TIGR01301       239 -KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVV  317 (477)
T ss_pred             -ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence             0000012233322     357899999999999999999999988876 45553321      1    12333444555


Q ss_pred             HHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHHHHHhccc--------------c----chHHHHHHHHHHh
Q 007159          473 MAVFANMGGWIADTLVS-KGLSITAVRKIMQSIGFLGPAFFLTQLSHV--------------R----TPAMAVLCMACSQ  533 (615)
Q Consensus       473 ~~ig~~l~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~----~~~~~~~~~~~~~  533 (615)
                      ..+.+++..++.+|+|+ |+....+.  ++..+++....   +.....              +    ....++.+..++.
T Consensus       318 ~~i~s~~l~~l~~~~g~~k~~~~~s~--~~~~~~l~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi  392 (477)
T TIGR01301       318 LGITSIGMEKLCRGWGAGKRLWGIVN--IILAICLAATV---LVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI  392 (477)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHH---HHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH
Confidence            55677778888999985 43222111  11122221111   111100              0    0223333333444


Q ss_pred             hhhhhhhhhhhhhhhccCc--chhhHHHHHHHHHHHHHHHHHHHHhhheeccC--ChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          534 GSDAFSQSGLYSNHQDIGP--RYAGVLLGLSNTAGVLAGVFGTAATGYILQRG--SWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~--~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~--g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      ............+.+..++  +..|..+|+.|.+..+.+.+..+..|.+.+..  +...++.+.++.++++.++.++..+
T Consensus       393 ~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~  472 (477)
T TIGR01301       393 PLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP  472 (477)
T ss_pred             HHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence            4433433344445555553  56699999999999999999999999865543  4667888888888888877766655


Q ss_pred             CCc
Q 007159          610 GER  612 (615)
Q Consensus       610 ~~k  612 (615)
                      +.+
T Consensus       473 ~~~  475 (477)
T TIGR01301       473 RPR  475 (477)
T ss_pred             CCC
Confidence            543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=99.87  E-value=3.2e-19  Score=193.98  Aligned_cols=395  Identities=14%  Similarity=0.086  Sum_probs=259.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      .+||..+...+...... .....++.+.+.+.+++|++..+++++.++. ....+++++.|++.||+|+|+++.++.+++
T Consensus        24 ~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34566655555444433 3345567788899999999999999998874 445567888999999999999999999999


Q ss_pred             HHHHHHHHhhhc----cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHH-HhhhHhhhh
Q 007159          283 SVATVLTPVAAR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVT-GLAVSPILI  357 (615)
Q Consensus       283 ~i~~~l~~~~~~----~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~i-g~~l~~~l~  357 (615)
                      .++.++++++.+    .+++.+.+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988721    268889999999999999999999999999995 78999999999999999976 454445443


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCc---c--ccHHHHh--h-----------------------------
Q 007159          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP---E--LRAEEKR--H-----------------------------  401 (615)
Q Consensus       358 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~--~-----------------------------  401 (615)
                        .+|++.|++.+++.++..++++...++++....   +  .+++++.  .                             
T Consensus       181 --~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y  258 (591)
T PTZ00207        181 --DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF  258 (591)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence              468888888888877766666555444432110   0  0011110  0                             


Q ss_pred             ------------------------hh----------------c----C-C----c----------------------c-c
Q 007159          402 ------------------------IL----------------G----G-S----I----------------------S-K  409 (615)
Q Consensus       402 ------------------------~~----------------~----~-~----~----------------------~-~  409 (615)
                                              ..                +    . .    .                      + .
T Consensus       259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (591)
T PTZ00207        259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI  338 (591)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence                                    00                0    0 0    0                      0 0


Q ss_pred             cccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          410 EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE--SGLFCVLPWLTMAVFANMGGWIADTL  487 (615)
Q Consensus       410 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~--~g~~~~~~~i~~~ig~~l~g~l~dr~  487 (615)
                      .+.....+.+.+++..+|++++..+|.......+..-+....+..-|.+...  ...+.++.+++..+|++..|++....
T Consensus       339 ~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~  418 (591)
T PTZ00207        339 APQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS  418 (591)
T ss_pred             CCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH
Confidence            0000115566677888999999998887776666666666666632663322  23377899999999999999988444


Q ss_pred             hhcc----ccHHHHHHHHHHHHH-HHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHH
Q 007159          488 VSKG----LSITAVRKIMQSIGF-LGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS  562 (615)
Q Consensus       488 g~~~----~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~  562 (615)
                      .+|+    +.+.    +.+.+.. +..+.+++.+..+ ...+.+..++.+.+.+...........+.+. ++-|+-.-+.
T Consensus       419 ~~~~~~~r~prt----~~l~~~~~~~~~~lll~~~~p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~  492 (591)
T PTZ00207        419 QKRRAEDRVPIT----IALFIPSVCIITMLTLFLTLP-KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFC  492 (591)
T ss_pred             Hhhccccccchh----HHHHHHHHHHHHHHHHHHHCC-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHH
Confidence            3333    2221    2222222 2222222222222 1234444444444444333333333444455 7777777777


Q ss_pred             HHHHHHHHHHH-HHHhhheecc-------------CChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          563 NTAGVLAGVFG-TAATGYILQR-------------GSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       563 ~~~~~lg~~ig-p~l~G~l~~~-------------~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .+..-+|..+- -.+.|.++|+             .-++..|++++++++++.++..++.
T Consensus       493 ~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        493 FLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            77777776665 5677888864             1278899999999999888766543

>PRK09669 putative symporter YagG; Provisional

Probab=99.87  E-value=2.1e-19  Score=193.96  Aligned_cols=334  Identities=15%  Similarity=0.109  Sum_probs=212.1

Q ss_pred             hHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh----cCC-chHHHHHHHHHHHHHHHHHhhhccC----hHH
Q 007159          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTPVAARIG----LPF  299 (615)
Q Consensus       229 ~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr----~Gr-k~~l~~~~~l~~i~~~l~~~~~~~~----~~~  299 (615)
                      ..+.+.+.+|+++.++|.+.++..+..++..|+.|.++||    +|| |+.++.+.+..+++.++....+..+    +.+
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~  111 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY  111 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3455778899999999999999999999999999999999    777 4566677777777766555444211    345


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcc-cccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-------CCCchHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGS  371 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-------~~gw~~~f~~~~~  371 (615)
                      +++..++.+.+......+..++.+++. +++||.+..++...+..+|..+++.+...+..       ..+|+..+.+.++
T Consensus       112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i  191 (444)
T PRK09669        112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL  191 (444)
T ss_pred             HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            566666777777777788889999987 46889988888888888887777765443332       2468878877777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      +..+..++.+...+++.+++++.+               ......++.+++++.++.+++..++............+.|.
T Consensus       192 i~~v~~~~~~~~~~e~~~~~~~~~---------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~  256 (444)
T PRK09669        192 LGVVLFFCCFFMTKERYTPEVDNS---------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV  256 (444)
T ss_pred             HHHHHHHHHhCCeEEecCCCCcCC---------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence            766655544443333211111000               00112567788999988887776666555544444444444


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMA  530 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~  530 (615)
                      +...+ +....+.+.....+..+++.++.+++.||+++|+....+.      +........+.... .+..+ +.+..++
T Consensus       257 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~i  328 (444)
T PRK09669        257 NYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI------VAFVILSALIFFIP-PSNVWLIFALNIL  328 (444)
T ss_pred             eeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH------HHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence            43333 3334445555566777888889999999999886443221      11111111111222 23333 3333333


Q ss_pred             HHhhhhhhhhhhhhhhhhc-c-------CcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          531 CSQGSDAFSQSGLYSNHQD-I-------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~-~-------~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      .+.+..... +.......+ .       +.+..|...|..+.+..+|..+|+.+.|.+.+..||
T Consensus       329 ~g~~~~~~~-~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        329 FNFIQNLTT-PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHH-HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333333333 333333322 2       234567889999999999999999999999987766

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.85  E-value=1.3e-17  Score=178.57  Aligned_cols=390  Identities=13%  Similarity=0.131  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-CCchHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVAT  286 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-Grk~~l~~~~~l~~i~~  286 (615)
                      +..++...+...+..+.+...+|.+ .+++|++..+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            3444444444455555555566654 567899999999999999999999999999999999 99999999999999988


Q ss_pred             HHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhccccc--chhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchH
Q 007159          287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (615)
Q Consensus       287 ~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~  364 (615)
                      ++++.... +...+.+...+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+.+||++
T Consensus        91 lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~  169 (493)
T PRK15462         91 VVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM  169 (493)
T ss_pred             HHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence            76664331 1222444444556677777788889999999865  68889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCC----CCccccHHHHhh---------------hhcCCccccccc-------ccc--
Q 007159          365 VFYSFGSLGSIWFALWLKKAYSSPK----EDPELRAEEKRH---------------ILGGSISKEAVS-------VIP--  416 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~~~~-------~~~--  416 (615)
                      .|.+.++..++..+.++...+..++    +++..++++...               ............       ...  
T Consensus       170 ~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLG  249 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987655433333332221111100    011110000000               000000000000       000  


Q ss_pred             -----H-HHH--hhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          417 -----W-KLI--LSKAPVWAL---IISHFCHNWGTFILLTWMPTYYNQVL-----KFNLTESGLFCVLPWLTMAVFANMG  480 (615)
Q Consensus       417 -----~-~~l--~~~~~~~~~---~l~~~~~~~~~~~~~~~~p~~~~~~~-----g~s~~~~g~~~~~~~i~~~ig~~l~  480 (615)
                           . +..  -.+++++.+   ++...++...+....+-+..|..+..     |++ ...+++.++..+..++..++.
T Consensus       250 ~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~  328 (493)
T PRK15462        250 VLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFL  328 (493)
T ss_pred             HHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHH
Confidence                 0 000  001122222   22222233333333445555655532     222 224566677777777777777


Q ss_pred             HHHHHHhhh--cccc---HHHHHHHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCc
Q 007159          481 GWIADTLVS--KGLS---ITAVRKIMQSIGFLGPAFFLTQLSH---VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP  552 (615)
Q Consensus       481 g~l~dr~g~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (615)
                      +++-.|..+  |...   ..+.......++++.+.+.......   .+..+++...++...+.....+.......+..|+
T Consensus       329 a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~  408 (493)
T PRK15462        329 AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP  408 (493)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence            777666633  2221   1222222223333222221111111   2334455555566667767777777777777788


Q ss_pred             chhhHHHHHHHHHH-HHHHHHHHHHhhheecc------------CChhHHHHHHHHHHHHH
Q 007159          553 RYAGVLLGLSNTAG-VLAGVFGTAATGYILQR------------GSWDDVFKVAVVLYIIG  600 (615)
Q Consensus       553 ~~~g~~~gl~~~~~-~lg~~igp~l~G~l~~~------------~g~~~~f~~~~~~~l~~  600 (615)
                      +.+|..+|+..... .+|..++..+.+...+.            ..|...|...+...++.
T Consensus       409 ~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        409 GVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999986643 57777776666655311            13566777777655544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=1e-18  Score=192.66  Aligned_cols=332  Identities=15%  Similarity=0.122  Sum_probs=210.9

Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcc
Q 007159          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~  313 (615)
                      .+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++  +++.+++.|++.|++.+.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence            456677888899999999999999999999999999999999999999999999999999  899999999999999999


Q ss_pred             hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCC---
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE---  390 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---  390 (615)
                      .......++.|++++++|+.+..+ ......++.+++++++++..  +|||.+++..+..++.+++++ ..++.++-   
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~-l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWF-LPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH-ccCcChHHHHH
Confidence            999999999999999999999999 88888888889999988887  899999998888776665533 23232221   


Q ss_pred             Ccccc--HHHHhhhhc---CCcc----------------ccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          391 DPELR--AEEKRHILG---GSIS----------------KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       391 ~~~~~--~~~~~~~~~---~~~~----------------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +.+.+  .+..++..+   ....                ....+...+..+++.+.+....+...+..+.......-++ 
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~-  342 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS-  342 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh-
Confidence            00000  000000000   0000                0000112344555555433333333332222222222222 


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHH
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLC  528 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~  528 (615)
                      +....+|.+..   ....+.+.....+....+...|++|||......       ..+...++........... .+....
T Consensus       343 ~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (521)
T KOG0255|consen  343 LNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLS-------LFLAGIGLLLFGWLPDDLGGWLHWIL  412 (521)
T ss_pred             hhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHHHHHHHhhccchhHHHHHH
Confidence            22222443332   333344446666777778999999887433211       1111111111111111111 122222


Q ss_pred             HHHHhhhhh-hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          529 MACSQGSDA-FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       529 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                      ..++.+... ..........+.+|...|..+.+..+....+|.+++|.+.-....
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  413 PLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222222222 222333445556677999999999999999999999998765544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.85  E-value=2.7e-19  Score=193.56  Aligned_cols=381  Identities=10%  Similarity=-0.032  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHH-HhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcC-----CchHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMS-IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPVLGFGVIW  281 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~G-----rk~~l~~~~~l  281 (615)
                      .+.++...++..+.. .... ...+.+.+++|++..+++...++..++..+-.+ +|+++||++     ||+.++++.++
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            445555566777777 4444 445556678999999999999999999999666 999999997     77777777766


Q ss_pred             HH-HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHH---HHHHHHHHHHHHHHhhhHhhhh
Q 007159          282 WS-VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSL---AFVYSGMYLGSVTGLAVSPILI  357 (615)
Q Consensus       282 ~~-i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~lG~~ig~~l~~~l~  357 (615)
                      .. +.....+..++ ......+..++.+++.+...++..++..|..+ +++....   ++......+|.++|+.++|.+.
T Consensus       105 ~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       105 GSAILYGLLPGKVS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            63 43333333331 23344457889999999999999999999997 5444433   3333445589999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHH---hhhhcCCccccccccccHHHHhhhhhHHHHHHHHH
Q 007159          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK---RHILGGSISKEAVSVIPWKLILSKAPVWALIISHF  434 (615)
Q Consensus       358 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  434 (615)
                      +.++|+..|++.+++.++..+......++++...++..+++.   .....+............+..+++|.++...+..+
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif  262 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIF  262 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            999999999988877766644333332221000111000000   00000000000000113444567777777555555


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Q 007159          435 C-HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFL  513 (615)
Q Consensus       435 ~-~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l  513 (615)
                      + ..........++ .+..+.+|+++...|.+....+++.+++..+.+++.+|++.|+.+.         ++.+..++..
T Consensus       263 l~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~---------~~~~l~~~~~  332 (468)
T TIGR00788       263 LSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFG---------VTTLLYTLSS  332 (468)
T ss_pred             HHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH---------HHHHHHHHHH
Confidence            5 222111111110 1233458999999999999999999999999999988888774332         2222211111


Q ss_pred             HHh-----c------cccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          514 TQL-----S------HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       514 ~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                      ...     .      ......+.....+...+......+......+..+++..|+..++.+.+.++|..+++.++|++.+
T Consensus       333 ~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       333 LFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             hCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100     0      01111122222333333334444555556777888999999999999999999999999999999


Q ss_pred             cCC-----hhHHHHHHHHHHHHHHH
Q 007159          583 RGS-----WDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       583 ~~g-----~~~~f~~~~~~~l~~~l  602 (615)
                      ..|     ++..+.+..+..+..++
T Consensus       413 ~~g~~~~~~~~~~~~i~i~~~~~l~  437 (468)
T TIGR00788       413 TIGITCDNSNNLWLLILGHSLAPLL  437 (468)
T ss_pred             HcCCCcccccchHHHHHHHHHHHHH
Confidence            877     77776665555544443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.84  E-value=1.3e-18  Score=177.86  Aligned_cols=278  Identities=10%  Similarity=0.034  Sum_probs=193.9

Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC----------------
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK----------------  359 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~----------------  359 (615)
                      +++.+++.-++.|.|.+...+..+.++++..++|++++.+++.+...++|..+||++++.+...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            6788999999999999999999999999999999999999999999999999999999987732                


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHH
Q 007159          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG  439 (615)
Q Consensus       360 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  439 (615)
                      ..|++.|++.+.+..+..+++.+...++.+++ +.++...+         +.   ...+..+++|.++...+..+++...
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~-~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~~~f~yvg~  155 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEA-DVARVSSG---------DT---TQKTSAFQFTHLVLGALGIFVYVGA  155 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc-cccccccc---------cc---cchhhHHhhHHHHHHHHHHHHHHHH
Confidence            36899999777665555554443322111111 10000000         00   0122356778888888888887778


Q ss_pred             HHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhc
Q 007159          440 TFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS  517 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~--~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  517 (615)
                      ......|++.|+.+.  +|+++.+.+...+.+..+.++|+++.+++.||++.++.+....     .+..+.  ..+... 
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~-----~l~~~~--~~l~~~-  227 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA-----FLAVLL--SIGAAL-  227 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHH--HHHHHH-
Confidence            999999999999864  6999999999999999999999999999999999886433211     111111  111111 


Q ss_pred             cccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHH
Q 007159          518 HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY  597 (615)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~  597 (615)
                       .+.....+...+++.+.....+.......+.. +++.+++.++. ....+|+.++|++.|.+.|..|.+..|++..++.
T Consensus       228 -~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~-~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       228 -THGYVAMWFVLALGLFNSIMFPTIFSLALNAL-GRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence             12222233333444444444444443444443 44566777775 6778999999999999999989888877544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.5e-20  Score=190.31  Aligned_cols=395  Identities=15%  Similarity=0.168  Sum_probs=252.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhc-C-------CCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF-N-------WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPV  274 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-g-------~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~  274 (615)
                      +++.+.+.+.-.+++...++...++...+.+...+ |       +++...+.+..+..+|.+++|++.|++.||+|||++
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v  116 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV  116 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            45566777777788888888888888887765544 1       456677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHH
Q 007159          275 LGFGVIWWSVATVLTPVAARIG-----LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG  349 (615)
Q Consensus       275 l~~~~~l~~i~~~l~~~~~~~~-----~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig  349 (615)
                      +...++++.++++++++....+     ..++.+.|++.|+|.|.-+|...++.+|...++.||...+.+.+....|.+.|
T Consensus       117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG  196 (538)
T KOG0252|consen  117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG  196 (538)
T ss_pred             hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence            9999999999998777654221     36788999999999999999999999999999999999988888777777777


Q ss_pred             hhhHhhhhc----CC-----------CchHHHHHHHHHHHHHHHHHHhhhcCCCCCC----ccccH--HHHhhhhcC---
Q 007159          350 LAVSPILIQ----KF-----------GWPSVFYSFGSLGSIWFALWLKKAYSSPKED----PELRA--EEKRHILGG---  405 (615)
Q Consensus       350 ~~l~~~l~~----~~-----------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~---  405 (615)
                      .+++-.+..    .+           =||..|.+.++..++.+.. -...++.+.-+    ++.+.  ++.++....   
T Consensus       197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~  275 (538)
T KOG0252|consen  197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYTALVSKKLKQAAGDMKKVLSVDIE  275 (538)
T ss_pred             cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHHHHhhcCHhhhhhccccccccccc
Confidence            666554431    11           1887776544443333222 22222221111    00000  000000000   


Q ss_pred             -C-----ccccccc-cccHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------HHH
Q 007159          406 -S-----ISKEAVS-VIPWKLILSK---APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL--------FCV  467 (615)
Q Consensus       406 -~-----~~~~~~~-~~~~~~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~--------~~~  467 (615)
                       .     ..+.+.. ...+...+..   +.+...+...|+.-.+++....+....++. .|+.+...-.        ...
T Consensus       276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHH
Confidence             0     0000000 0112112211   344555666777777778777777777765 4655443322        111


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHHhhhhhhhhh-
Q 007159          468 LPWLT-MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT----PAMAVLCMACSQGSDAFSQS-  541 (615)
Q Consensus       468 ~~~i~-~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-  541 (615)
                      +...+ .+.|-.+..++.|++||+..         ...+++++.++.+.+..+..    ..-.+++..+..++..+.+. 
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~i---------q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~  425 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYI---------QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA  425 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHH---------HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc
Confidence            22222 22244455678999999943         33444444444333332222    11111222222222223222 


Q ss_pred             -hhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec-----cCChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          542 -GLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-----RGSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       542 -~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~-----~~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                       ......+..|.+.|++..|+....+-.|+++|....+++.+     ..+...++++.+++++++.+..+++.
T Consensus       426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence             22334555667999999999999999999999999999999     68999999999999999988877665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=176.63  Aligned_cols=397  Identities=16%  Similarity=0.147  Sum_probs=282.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHH
Q 007159          199 WEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG  278 (615)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~  278 (615)
                      .+..+|||.+++.+.+..+...+.+..+++........+| +...+-|...+|.+.+....+++-|+.||+|-|..++++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            3466789999888888888777777777777777777888 777788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc----ChH--HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhh
Q 007159          279 VIWWSVATVLTPVAARI----GLP--FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV  352 (615)
Q Consensus       279 ~~l~~i~~~l~~~~~~~----~~~--~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l  352 (615)
                      .++.+++..+-..+...    .++  +...+..+.+.+.-........+..-||+++||..+..+-..+..+|.++|.++
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            99999999876655422    233  667888888888888877777888999999999999999999999999999998


Q ss_pred             HhhhhcCC------CchH--HHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhh
Q 007159          353 SPILIQKF------GWPS--VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKA  424 (615)
Q Consensus       353 ~~~l~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  424 (615)
                      .+.+..+-      .|..  .|+..+++..+.+++..+..+++|+..+........         +..-....+..++++
T Consensus       196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n~  266 (480)
T KOG2563|consen  196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKNR  266 (480)
T ss_pred             cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcCc
Confidence            88887654      2433  344445555444444444444444433322222111         001223567788999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI  504 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~  504 (615)
                      .+..+.+.+......++...+.+-.-+.. -|.+...+|....+..+++++++.+.|.+.||.+..+....    .....
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~----v~~~~  341 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTL----VLYLF  341 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHH
Confidence            88888777666665566655555433333 46676788999999999999999999999999876653221    11111


Q ss_pred             HHHH-HHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          505 GFLG-PAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       505 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                      .+.. +.+...........++...+..++.+..+..+...-...+...|..-++..|+.++.+.+-+.+-..+.+...+.
T Consensus       342 ~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  342 ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence            1111 111112222234445556666667776666676666677778888888999999999999999999999999987


Q ss_pred             CC----hhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          584 GS----WDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       584 ~g----~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      .+    +...-+.+...++++.++..+++.+
T Consensus       422 ~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  422 LGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             cCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            66    6655566666666666665555443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.82  E-value=8.8e-18  Score=182.69  Aligned_cols=353  Identities=12%  Similarity=0.071  Sum_probs=218.6

Q ss_pred             HhhhhhHHHHhHH-HHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhh----hcCC-chHHHHHHHHHHHHHHHHHhh
Q 007159          219 CNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGG-KPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       219 ~~~~~~~~~~~~~-~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D----r~Gr-k~~l~~~~~l~~i~~~l~~~~  292 (615)
                      ..+....+..+++ .+.+.+|+++..+|.+..+.-+.-++..|+.|.++|    |+|| |+.++++.+..+++.+++...
T Consensus        18 ~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~   97 (473)
T PRK10429         18 KDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA   97 (473)
T ss_pred             HhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC
Confidence            3344444444444 456677999999999999999999999999999999    5698 667777888877776665443


Q ss_pred             hccC----hHHHHHHHHHHHhhhcchhhHHHHHhhhcc-cccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-------CC
Q 007159          293 ARIG----LPFLLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KF  360 (615)
Q Consensus       293 ~~~~----~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-------~~  360 (615)
                      +..+    +..+++..++.+++......+..++..++. +++||.+..++...+..+|..+++.+...+.+       ..
T Consensus        98 p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~  177 (473)
T PRK10429         98 HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGF  177 (473)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            3111    334556666778888888889999999988 58899999998777777776666555443322       12


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHH
Q 007159          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT  440 (615)
Q Consensus       361 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  440 (615)
                      +|+...++.+++..+..++.+...++.+.++....+++          ++......++.+++|+.++.+++..++.....
T Consensus       178 g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~  247 (473)
T PRK10429        178 GFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------SHLTLKDIVALIYKNDQLSCLLGMALAYNIAS  247 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc----------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            46666666666555544444443333221111000000          00001123455678888888888777777666


Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       441 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      .....+.+.|++...+ +....+.+.....++.+++.++.+++.||+|+|+....+.  .+..++.+.  .....+....
T Consensus       248 ~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~--~~~~~~~~~--~~~~~~~~~~  322 (473)
T PRK10429        248 NIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGAS--IFPVLSCGV--LLLMGLAAPH  322 (473)
T ss_pred             HHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH--HHHHHHHHH--HHHHhccCch
Confidence            6666666655554433 5566677777777888999999999999999987544221  111111111  1111111222


Q ss_pred             chHHHH-HHHHHHhhhhhhhhhhhhhhhhc-------cCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          521 TPAMAV-LCMACSQGSDAFSQSGLYSNHQD-------IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       521 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ..+..+ ..++.+.+.............+.       .+.+..|..+|....+..++..+++.+.|++.+..||
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            233322 22333333322222222222222       2245567799999999999999999999999886655

>PRK09848 glucuronide transporter; Provisional

Probab=99.82  E-value=1.2e-17  Score=180.67  Aligned_cols=344  Identities=13%  Similarity=0.066  Sum_probs=202.9

Q ss_pred             hhhhhHHHHh-HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc----CCchH-HHHHHHHHHHHHHHH-Hhh
Q 007159          220 NMDRVNMSIA-ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF----GGKPV-LGFGVIWWSVATVLT-PVA  292 (615)
Q Consensus       220 ~~~~~~~~~~-~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~----Grk~~-l~~~~~l~~i~~~l~-~~~  292 (615)
                      ........++ .+.+.+.+|++..++|++.++..+..++..+++|+++||.    |||+. +..+.+...+..++. ...
T Consensus        21 ~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~  100 (448)
T PRK09848         21 NFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc
Confidence            3333333333 3456677899999999999999999999999999999996    66664 455555444444332 221


Q ss_pred             hc----cChHHHHHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHH-----HHHHHHHhhhHhhhhcCC--
Q 007159          293 AR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGM-----YLGSVTGLAVSPILIQKF--  360 (615)
Q Consensus       293 ~~----~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----~lG~~ig~~l~~~l~~~~--  360 (615)
                      ..    .....+++..++.+++.+...++..++..+... +++|.+..++-..+.     .++.+++|.+++......  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~  180 (448)
T PRK09848        101 TDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVS  180 (448)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            11    112334455567788888888877777776654 467887766654432     345556666655432211  


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHH
Q 007159          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT  440 (615)
Q Consensus       361 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  440 (615)
                      +|.....+.+++..+..++.....+++.+++.+.                ......++.++++|.++...+..++...+.
T Consensus       181 ~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~  244 (448)
T PRK09848        181 VYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----------------PSLKISLQTLKRNRPLFMLCIGALCVLIST  244 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            1211112222222222222222222221111000                001124677889999998888888888777


Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       441 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      .......|.|+++.+|.+....++......++.+++.++.+++.||+++++.+..+.  .     +...+.....+....
T Consensus       245 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~--~-----~~~i~~~~~~~~~~~  317 (448)
T PRK09848        245 FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGA--L-----LGTCGYLLFFWVSVW  317 (448)
T ss_pred             HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--H-----HHHHHHHHHHHcCch
Confidence            777778888888888887766665555556677888999999999999886544322  1     111111111121112


Q ss_pred             chHHH-HHHHHHHhhhhhhhhhhhhhhhhccC-------cchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          521 TPAMA-VLCMACSQGSDAFSQSGLYSNHQDIG-------PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       521 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ..+.. +...+.+.+.............+..+       .+..|...|+.+....+|..+|+.+.|.+.+..||
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22222 22333333333333332222222222       23569999999999999999999999998876655

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=7e-18  Score=181.24  Aligned_cols=340  Identities=17%  Similarity=0.231  Sum_probs=239.5

Q ss_pred             HhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhh----hcCCch-HHHHHHHHHHHHHHHHHhh-h-cc----C
Q 007159          228 IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGGKP-VLGFGVIWWSVATVLTPVA-A-RI----G  296 (615)
Q Consensus       228 ~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D----r~Grk~-~l~~~~~l~~i~~~l~~~~-~-~~----~  296 (615)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||+ .++++.+..+++.+++... + ..    .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3455577888999999999999999999999999999999    799655 5667888888888777655 3 11    1


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-------CchHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-------GWPSVFYS  368 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-------gw~~~f~~  368 (615)
                      ..++++..++..++......+..++..|+.+ ++||.+..+.-..+..+|.++...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2345677777799999999999999999997 578999999988888888876666666655422       58888888


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      .+++.++..++.....++.+.+.++.++             +..-...++.+++||+++.+.+..++...+........+
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQEK-------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccccc-------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            8888777777766665551111111100             001122567788999999999888888888888888888


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC  528 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  528 (615)
                      .|.+..+|.+ ...+.+.....+..+++.++.+++.||+|+|+....+.  .+..++.    +.+......+.....+..
T Consensus       250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~i~~  322 (428)
T PF13347_consen  250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL--LLAALGF----LLLFFLGPGSPWLVLILF  322 (428)
T ss_pred             HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH--HHHHHHH----HHHHHHHhhhHHHHHHHH
Confidence            8888888877 56677777888999999999999999999998655332  1111111    111111112333344444


Q ss_pred             HHHHhhhhhhhhhhhhhhhhcc-------CcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChh
Q 007159          529 MACSQGSDAFSQSGLYSNHQDI-------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD  587 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~  587 (615)
                      .+.+.+.............+..       +++..|...|+.+.+..++..+++.+.|.+.+..||.
T Consensus       323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            4444444333333222233222       2356799999999999999999999999998765543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=1.2e-16  Score=161.79  Aligned_cols=349  Identities=17%  Similarity=0.073  Sum_probs=255.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCch-HHHHHHHHHHHHHHHHHhhhc-cChHHHHHHHHHHHhhhcchhhHHH
Q 007159          242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP-VLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMN  319 (615)
Q Consensus       242 ~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~-~l~~~~~l~~i~~~l~~~~~~-~~~~~ll~~r~l~G~~~~~~~~~~~  319 (615)
                      +..|...++..+..++..|+.|.++|+.|+|| .+....++..+..+++.+++. ..++..++..++..++........+
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45788889999999999999999999999655 555566666666777777775 3456667777888999999999999


Q ss_pred             HHhhhcccccchhhHHHHHHHHHHHHHHHHhhhH--hhh-h---------------cCCCchHHHHHHHHHHHHHHHHHH
Q 007159          320 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS--PIL-I---------------QKFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       320 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~--~~l-~---------------~~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      +++.+..++++.++..++-.....+|..+.-++.  ..+ .               +...-|.++.+.++..++..+..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            9999999988888887777777777766554442  111 1               223467778777777777777666


Q ss_pred             hhhcCCCCCC-ccccH--HHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007159          382 KKAYSSPKED-PELRA--EEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (615)
Q Consensus       382 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s  458 (615)
                      ...++.+... +..+.  ...++           -...++++.+++.+..+++..+++.-+..........|....+|++
T Consensus       218 ~~v~~~~~~~~~~~~~l~~g~k~-----------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls  286 (438)
T COG2270         218 LNVHDAEKISSPPPTALRNGFKE-----------LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLS  286 (438)
T ss_pred             hcccccccccccchHHHHHHHHH-----------HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCcc
Confidence            6666655322 11110  00010           0125677888888999999999999999999999999999889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhh
Q 007159          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF  538 (615)
Q Consensus       459 ~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  538 (615)
                      ..+..++.....+.+++|.++.|++.+|++.|+++..+.       .. ....++..........+.+..++++...++.
T Consensus       287 ~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l-------vi-~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         287 STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL-------VI-LSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH-------HH-HHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            999999999999999999999999999999997655332       11 1111112222223334444555556666666


Q ss_pred             hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       539 ~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      ...+-....+.+|+++.++.+|+++..+..+..+||.+.+.+.+. ++.+..+....++.+++.++.+..+.
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence            666666678889999999999999999999999999999999986 55777777777777777776655543

>PRK11462 putative transporter; Provisional

Probab=99.78  E-value=1.7e-15  Score=163.84  Aligned_cols=333  Identities=12%  Similarity=0.056  Sum_probs=207.8

Q ss_pred             HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh----cCCc-hHHHHHHHHHHHHHHHHHhhhccC----hHHH
Q 007159          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGK-PVLGFGVIWWSVATVLTPVAARIG----LPFL  300 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr----~Grk-~~l~~~~~l~~i~~~l~~~~~~~~----~~~l  300 (615)
                      ...+.+.+|+++..+|.+..+.-+.-++..|+.|.++||    +||| +.++++.+..+++.+++...+..+    +..+
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~  112 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA  112 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            444677889999999999999999999999999999996    6875 556667777777776665454222    3445


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-------CCchHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------FGWPSVFYSFGSL  372 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-------~gw~~~f~~~~~~  372 (615)
                      ++..++..++......+..++.++..+ ++||.+..++...+..+|..+++.+...+.+.       .+|+....+.+++
T Consensus       113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii  192 (460)
T PRK11462        113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV  192 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            666677788888888888899998886 78999999999999999888887776554433       2567766666666


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (615)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  452 (615)
                      .++...+.+...+++++++++..  .              ....++.+++|+.++.+....++..............|.+
T Consensus       193 ~~i~~~i~~~~~kE~~~~~~~~~--~--------------~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~  256 (460)
T PRK11462        193 AFMMLAFCFFTTKERVEAPPTTT--S--------------MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT  256 (460)
T ss_pred             HHHHHHHHHhcceeccCCCccCC--C--------------HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Confidence            55555444443333221111000  0              0113556778888777766655555554444444444444


Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 007159          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS  532 (615)
Q Consensus       453 ~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  532 (615)
                      ..+|. ....+.+.....++.+++.++++++.||+++|+......      .......+.+............+..++.+
T Consensus       257 y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  329 (460)
T PRK11462        257 WILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN------ALLAVISLAMFFVPMQASITMFVFIFVIG  329 (460)
T ss_pred             hhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH------HHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            44443 334456667777888889999999999999875432111      11111111111111111112222222222


Q ss_pred             hhhhhhhhhhhhhhhhcc--------CcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          533 QGSDAFSQSGLYSNHQDI--------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~--------~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      .+. ............+.        +.+..|...+....+..+|..+++.+.|.+.+..||
T Consensus       330 ~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        330 VLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            222 22222222222222        134456767888888999999999999998876555

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.77  E-value=1.1e-22  Score=220.00  Aligned_cols=391  Identities=16%  Similarity=0.168  Sum_probs=237.0

Q ss_pred             HHHHhhhhhHHHHhHHHHH--hhcCCC---------chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          216 FLLCNMDRVNMSIAILPMS--KEFNWN---------STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~--~~~g~s---------~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      .+..+++...++...+...  ..++.+         ..+.+++.+...++..+|.+++|.++||+|||+.++++.++..+
T Consensus         9 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i   88 (451)
T PF00083_consen    9 GFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMII   88 (451)
T ss_pred             HHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence            3555566655555444433  222222         23468999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcc-ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC---
Q 007159          285 ATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---  360 (615)
Q Consensus       285 ~~~l~~~~~~~-~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~---  360 (615)
                      +.++..+++.. +++.++++|++.|++.|...+....++.|..|+++|++..++.+....+|.+++..++..+....   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  168 (451)
T PF00083_consen   89 GSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNW  168 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999888733 57789999999999999999999999999999999999999999999999998888776554433   


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcCCCCCC---c---cccH-HHH-------hhhhcCCc---cccccccccHHHHhhh
Q 007159          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKED---P---ELRA-EEK-------RHILGGSI---SKEAVSVIPWKLILSK  423 (615)
Q Consensus       361 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~-~~~-------~~~~~~~~---~~~~~~~~~~~~l~~~  423 (615)
                      +||+.+++..+..++..+... ..++.|.--   .   +.++ .++       ++...+..   .+.......+++++++
T Consensus       169 ~Wr~~~~~~~~~~l~~~~~~~-~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  247 (451)
T PF00083_consen  169 GWRILLIFGAIPSLLVLLLRF-FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRN  247 (451)
T ss_pred             ccccccccccccccccccccc-ccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccc
Confidence            499998877766655444333 333332110   0   0000 000       00000000   0000001235555555


Q ss_pred             hh----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 007159          424 AP----VWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVR  498 (615)
Q Consensus       424 ~~----~~~~~l~~~~~-~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~  498 (615)
                      +.    +...+...++. ..+......+.|.++++ .+.+..  -.......+...++.++..++.||+|||+..+.+. 
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~-  323 (451)
T PF00083_consen  248 KKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL-  323 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccc-
Confidence            32    22222222222 22223344455555544 566665  12223344555566677779999999997665432 


Q ss_pred             HHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhhhh-hhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 007159          499 KIMQSIGFLGPAFFLTQLSHVR---TPAMAVLCMACSQGSD-AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGT  574 (615)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp  574 (615)
                       ....++.+..+.........+   .....+...+...... +..+.......+..|.+.|+++.|+...+..++..+++
T Consensus       324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~  402 (451)
T PF00083_consen  324 -LLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIP  402 (451)
T ss_pred             -ccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence             111111111110001111110   1111111111111222 22223333346667779999999999999999999999


Q ss_pred             HHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 007159          575 AATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGER  612 (615)
Q Consensus       575 ~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~~k  612 (615)
                      .+...+.+..+....+.+.++++++..++..++.++.|
T Consensus       403 ~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  403 FLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            99999988877556666666666666655555444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.75  E-value=5.8e-15  Score=150.22  Aligned_cols=361  Identities=14%  Similarity=0.119  Sum_probs=245.7

Q ss_pred             HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcC-----CchH-HHHHHHHHHHHHHHHHhhh----c-------c
Q 007159          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPV-LGFGVIWWSVATVLTPVAA----R-------I  295 (615)
Q Consensus       233 i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~G-----rk~~-l~~~~~l~~i~~~l~~~~~----~-------~  295 (615)
                      +..|++++...++.+.++..+... ..+.+|..+|+.+     ||.. +..|.++...+..+.+++.    .       .
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999998887765 5888999999988     6644 5556666666555544332    1       1


Q ss_pred             Ch---HHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH---HHHH
Q 007159          296 GL---PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV---FYSF  369 (615)
Q Consensus       296 ~~---~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~---f~~~  369 (615)
                      .+   ....+..++.|+|.+...++..+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.+.-.-.   +...
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            11   22344566779999999999999999999999999999999999999999999999998887663222   2222


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +++.++..++..+..+++..+.....+           +++......+++++.+|....++...++...+++.--..+-+
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~-----------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP  233 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAE-----------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCC-----------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence            333332222222222211111110000           011111235677888888888888888888888888888999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC  528 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  528 (615)
                      |--+++|++..+...+......+..+|..+.|++..| .++++...     +.+..+.......+..-...+...+....
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~-----~G~~~~~~~f~lii~a~~~~~~~~~~~~~  308 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAA-----LGCLLGALAFALIILAGPLGSPWLFRPGV  308 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH-----HHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            9999999999999999999999999999999988774 44433221     11112222221112222222333444455


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc----------CChhHHHHHHHHHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR----------GSWDDVFKVAVVLYI  598 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~----------~g~~~~f~~~~~~~l  598 (615)
                      ++++.+.+.+.........+...++..|..+|.....+.++..++..++|.+.|.          .+|..+|.+=+++.+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            5556565556666666677777789999999999999999999999999998873          257777777777777


Q ss_pred             HHHHHHHHHhcC
Q 007159          599 IGTLVWNLFATG  610 (615)
Q Consensus       599 ~~~l~~~~~~~~  610 (615)
                      ++.++..-+.++
T Consensus       389 ~a~~ll~~l~~~  400 (403)
T PF03209_consen  389 AALVLLGRLDRR  400 (403)
T ss_pred             HHHHHHHHhhhh
Confidence            776665544433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2e-15  Score=157.87  Aligned_cols=352  Identities=15%  Similarity=0.151  Sum_probs=245.3

Q ss_pred             HHHhhhhhHHHHhHH-HHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh----cCC-chHHHHHHHHHHHHHHHHH
Q 007159          217 LLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTP  290 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~-~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr----~Gr-k~~l~~~~~l~~i~~~l~~  290 (615)
                      +...........++. .+.+.+|+++..+|.++.+.-+.-++.-|+.|.++||    +|| |+.++.+.+-.++...++.
T Consensus        22 ~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F  101 (467)
T COG2211          22 FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF  101 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH
Confidence            333333333444444 4677889999999999999999999999999999997    675 5667778788888888777


Q ss_pred             hhhc----cChHHHHHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-------
Q 007159          291 VAAR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------  358 (615)
Q Consensus       291 ~~~~----~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-------  358 (615)
                      .+++    ..+...++..++.+++......+..++.+++.+ ++||.+..++-..+..+|.++...+.+.+..       
T Consensus       102 ~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~  181 (467)
T COG2211         102 ITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDK  181 (467)
T ss_pred             cCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7763    345667788889999999999999999998875 7899999999999888887766555554443       


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHH
Q 007159          359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (615)
Q Consensus       359 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  438 (615)
                      ..||+...++.+++..+..+++++..++...+....++..+.           +....+..+++|+++...++..++...
T Consensus       182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~-----------~~~~~~~~~~~Nrp~~~~l~~~l~~~~  250 (467)
T COG2211         182 ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL-----------KLKDSFLLIFKNRPLLLLLLMNLLLFI  250 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc-----------cHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            357888888888888777777777666554422211110000           001134467889999888888888777


Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007159          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH  518 (615)
Q Consensus       439 ~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  518 (615)
                      +.....+....|.+..+|.+.............+.+++.++..++.+|+|+|+....+.       .+.+.+.....+..
T Consensus       251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~-------~~~~i~~~~~~f~~  323 (467)
T COG2211         251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL-------LLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH-------HHHHHHHHHHHhhc
Confidence            77777888888888888888888888888888888888999999999999997655331       11111111222222


Q ss_pred             ccchHHHHHHHHHHhhhhhhhhhhhhhhhhc--------cCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          519 VRTPAMAVLCMACSQGSDAFSQSGLYSNHQD--------IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      .+...+.++..++.........+.......+        .+.+..|...|.+..+.-+|..++..+.|++.+..||
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344444444333333333333322222222        2346679999999999999999999999999876554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.72  E-value=6.1e-16  Score=162.00  Aligned_cols=391  Identities=17%  Similarity=0.200  Sum_probs=237.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhh--cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCC-chHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVI  280 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Gr-k~~l~~~~~  280 (615)
                      .+|+.+.++.+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++.+..|.+..|.+. |+.++++.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i  110 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL  110 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence            347788888888888877777776665566666  77888889999999999999999999999999886 888899999


Q ss_pred             HHHHHHHHH-Hhhh--ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhh
Q 007159          281 WWSVATVLT-PVAA--RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (615)
Q Consensus       281 l~~i~~~l~-~~~~--~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~  357 (615)
                      +..++.++. ++..  +..-++++++|++.|+|.+.. ...-+++++....++|.++++....+..+|.++||.+...+.
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            999999887 4332  224578999999999997765 677788888887899999999998888888888888776654


Q ss_pred             cC--CC-----------chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccc---cHHHHhhhhcCCccccccccccHHHHh
Q 007159          358 QK--FG-----------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL---RAEEKRHILGGSISKEAVSVIPWKLIL  421 (615)
Q Consensus       358 ~~--~g-----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~  421 (615)
                      ..  .|           +...-|+.+++.++.+++.....++...+..+.   ..++.+..    .++.....      +
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~  259 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD----IEKVKKPK------L  259 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc----hhhhccCC------h
Confidence            31  11           223334455554444444443333332222111   11010000    00000000      1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH----HHHHHHHHHHHHHHHHH-HHhhhccccHHH
Q 007159          422 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCV----LPWLTMAVFANMGGWIA-DTLVSKGLSITA  496 (615)
Q Consensus       422 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~----~~~i~~~ig~~l~g~l~-dr~g~~~~~~~~  496 (615)
                      .....+.+++..+...+......+..+.+....++++..++-...+    +.++..+...+...... .++.+|+.+..+
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g  339 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLG  339 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeh
Confidence            1122334444445555555555666677777777887766544433    33333332222222222 122223222211


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccc---------------------------hHHHHHHH--HHHhhhhhhhhhhhhhhh
Q 007159          497 VRKIMQSIGFLGPAFFLTQLSHVRT---------------------------PAMAVLCM--ACSQGSDAFSQSGLYSNH  547 (615)
Q Consensus       497 ~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~  547 (615)
                           ....+....+.+........                           .+..+...  .++...-...........
T Consensus       340 -----~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS  414 (488)
T KOG2325|consen  340 -----FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS  414 (488)
T ss_pred             -----HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence                 01111111111111111010                           01111111  111111112222344567


Q ss_pred             hccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          548 QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       548 ~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      +.++|+++++..|++.....++..++|.+...+....|++.++.+.+...++...++.+..++
T Consensus       415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r  477 (488)
T KOG2325|consen  415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKR  477 (488)
T ss_pred             HHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778999999999999999999999999999999999999999988888777777666655443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.69  E-value=2.9e-14  Score=147.80  Aligned_cols=399  Identities=17%  Similarity=0.172  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHHh-HHHHHhhcC----CCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIA-ILPMSKEFN----WNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWW  282 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g----~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~  282 (615)
                      +..++..-+.--+..+.+... ...+..+++    ++++++.-+.+.|..-.-+.++++|+++|| +|+|+.+++|.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            344444444444444444333 333444444    999999999999998889999999999999 59999999999999


Q ss_pred             HHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccc--hhhHHHHHHHHHHHHHHHHhhhHhhhhcCC
Q 007159          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKF  360 (615)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~  360 (615)
                      .++.++++.....+...+.++.++.++|.|.+-+....++++.+|+++  |-..++++..+.++|..++|++.+++.+++
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            999999887731245568888899999999999999999999998543  667788999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcC---CC--CCCccccHHHHhhhh--------cCC----cccccc-----------
Q 007159          361 GWPSVFYSFGSLGSIWFALWLKKAYS---SP--KEDPELRAEEKRHIL--------GGS----ISKEAV-----------  412 (615)
Q Consensus       361 gw~~~f~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~--------~~~----~~~~~~-----------  412 (615)
                      ||...|-+.++-..+.++..+..++.   .+  ++.............        ...    ...+..           
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~  262 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILI  262 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987666555444443332211   11  111111111100000        000    000000           


Q ss_pred             ccccHHHHh------h-hhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHH
Q 007159          413 SVIPWKLIL------S-KAPVWALI---ISHFCHNWGTFILLTWMPTYYNQVLKFN----LTESGLFCVLPWLTMAVFAN  478 (615)
Q Consensus       413 ~~~~~~~l~------~-~~~~~~~~---l~~~~~~~~~~~~~~~~p~~~~~~~g~s----~~~~g~~~~~~~i~~~ig~~  478 (615)
                      ...-+.+.+      . +++.+..+   +...++...+....+.+..|..+..+.+    ....++..++..+..++..+
T Consensus       263 ~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~p  342 (498)
T COG3104         263 AIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSP  342 (498)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHH
Confidence            000000000      1 11222222   2222222222222334444444332222    12345667777788888888


Q ss_pred             HHHHHHHHhhhcc--c---cHHHHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 007159          479 MGGWIADTLVSKG--L---SITAVRKIMQSIGFLGPAFFLTQLS----HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQD  549 (615)
Q Consensus       479 l~g~l~dr~g~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (615)
                      +..++..++++++  .   ...+....+...++++.........    ..+..+++...++...+.....+.......+.
T Consensus       343 I~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l  422 (498)
T COG3104         343 ILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKL  422 (498)
T ss_pred             HHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence            8888888855442  2   1222222333333333332211122    12344556666777777777777877778888


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHhhh------eeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          550 IGPRYAGVLLGLSNTAGVLAGVFGTAATGY------ILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       550 ~~~~~~g~~~gl~~~~~~lg~~igp~l~G~------l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .|+...+.+++........|..++..+.+.      ..+.......|..++...++..++.+..
T Consensus       423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         423 APPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            888888888888777777777777766663      2234566777887777776666555444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.64  E-value=1.5e-17  Score=180.95  Aligned_cols=375  Identities=14%  Similarity=0.180  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      ++++++.. +...+....+...+..+.+.|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-+|.++++++.+
T Consensus         5 l~~~~~~~-~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen    5 LVFLCLLG-LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            33343333 34456666667788899999999999999999999999999999999999998888889999999999988


Q ss_pred             HHHhhh------------------------------------------------ccChHHHHHHHHHHHhhhcchhhHHH
Q 007159          288 LTPVAA------------------------------------------------RIGLPFLLIMRAFMGIGEGVAMPAMN  319 (615)
Q Consensus       288 l~~~~~------------------------------------------------~~~~~~ll~~r~l~G~~~~~~~~~~~  319 (615)
                      ++++.+                                                ..-+.+++++.++.|+|.+..++...
T Consensus        84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            765421                                                00136778899999999999999999


Q ss_pred             HHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC---------------------C-chHHHHHHHHHHHHHH
Q 007159          320 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---------------------G-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       320 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~---------------------g-w~~~f~~~~~~~~~~~  377 (615)
                      +++-|..++++-+..+|+..+...+|.++|-++++.+...+                     | |-.-|++.+++.++..
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998765421                     1 4445566666666666


Q ss_pred             HHHHhhhcCCCCCCccc---cH---HHHhhhhcCCccc---------cccccccHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 007159          378 ALWLKKAYSSPKEDPEL---RA---EEKRHILGGSISK---------EAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (615)
Q Consensus       378 ~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~  442 (615)
                      +.++.++++.|...+..   +.   ++.+...+.....         ...-....+.+++||.+....+...+......+
T Consensus       244 ipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G  323 (539)
T PF03137_consen  244 IPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG  323 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            66665555544441100   00   0000000000000         011133567788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH-HHHHHHH-----
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG-PAFFLTQ-----  515 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i-~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~-----  515 (615)
                      +.+|+|.|++.+++.++..++++.....+ ++++|.+++|++.+|++.+..-..........+..+. ...+++.     
T Consensus       324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~  403 (539)
T PF03137_consen  324 FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPP  403 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCc
Confidence            99999999999999999999888766555 5678889999999998654211111111111111111 0000000     


Q ss_pred             -----hcc------------------------------------c-cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc
Q 007159          516 -----LSH------------------------------------V-RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR  553 (615)
Q Consensus       516 -----~~~------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (615)
                           ...                                    . ..+.+.+..++..........+......+.++++
T Consensus       404 ~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~  483 (539)
T PF03137_consen  404 IAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPE  483 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChh
Confidence                 000                                    0 0011111222222233333444555567778999


Q ss_pred             hhhHHHHHHHHHH-HHHHHHHHHHhhheecc
Q 007159          554 YAGVLLGLSNTAG-VLAGVFGTAATGYILQR  583 (615)
Q Consensus       554 ~~g~~~gl~~~~~-~lg~~igp~l~G~l~~~  583 (615)
                      +|+.+.|+..++. -+|.+-||++.|.++|.
T Consensus       484 ~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  484 QRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------
T ss_pred             hcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            9999999988776 45789999999999996

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=7.1e-14  Score=152.19  Aligned_cols=284  Identities=17%  Similarity=0.208  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~  286 (615)
                      ..++++.+..+...+....+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|.-|-+++-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34445555666666776777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-----------c-------c--------------------------------ChHHHHHHHHHHHhhhcchhh
Q 007159          287 VLTPVAA-----------R-------I--------------------------------GLPFLLIMRAFMGIGEGVAMP  316 (615)
Q Consensus       287 ~l~~~~~-----------~-------~--------------------------------~~~~ll~~r~l~G~~~~~~~~  316 (615)
                      +++++.+           .       .                                .+.+++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            9877542           0       0                                123677889999999999999


Q ss_pred             HHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC------------------C-chHHHHHHHHHHHHHH
Q 007159          317 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF------------------G-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       317 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~------------------g-w~~~f~~~~~~~~~~~  377 (615)
                      ...+++-|...+++-+..+|+......+|.++|-++++++...+                  | |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876421                  1 5555677777777777


Q ss_pred             HHHHhhhcCCCCCCccccHHHHhhhhcCC---ccccc--c----ccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          378 ALWLKKAYSSPKEDPELRAEEKRHILGGS---ISKEA--V----SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (615)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~----~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p  448 (615)
                      +.++.++++.|+..++...++.+....+.   .....  +    -....+.+++||.+....+...+....+.++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            77777776666544321111111111100   00000  0    123467788999999999999999999999999999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhc
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLT-MAVFANMGGWIADTLVSK  490 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~-~~ig~~l~g~l~dr~g~~  490 (615)
                      -|++..+|.++..+..+....++. ..+|.+++|++.+|+..+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999988655544 567888999999988654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.59  E-value=3.9e-13  Score=142.99  Aligned_cols=360  Identities=17%  Similarity=0.125  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCch-hhHHHHHHH----HHHHHHHHHhhHHhhhhcCCchHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNST-TVGLIQSSF----FWGYLLTQIVGGIWADKFGGKPVLGFGVI  280 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~-~~g~i~s~~----~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~  280 (615)
                      +.+....++-.+..++.........+.....++.... ..+......    .+..++..+..|.++||+|||..+....+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            4455555666666666665556666665555543222 233333333    67788899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccChHHHHHHHHHHHhh--hcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc
Q 007159          281 WWSVATVLTPVAARIGLPFLLIMRAFMGIG--EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (615)
Q Consensus       281 l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~  358 (615)
                      ...+..+...+..   +|.++    +.|+.  .+.......++++|....++|...+|+.......+..++|.+++.+..
T Consensus       101 ~~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  101 GTILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            8888887776664   43333    33332  244567788899999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCcc--ccccccccHHHHhhhhhHHHHHHHHHHH
Q 007159          359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSIS--KEAVSVIPWKLILSKAPVWALIISHFCH  436 (615)
Q Consensus       359 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~l~~~~~  436 (615)
                      ..|.-.+|++..+..++..+......+++..++++.. ........+...  .........+..-.+|..+.+++..+..
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH
Confidence            9999999998888777777666666665544333221 000000000000  0000000111112234444444444444


Q ss_pred             HHHHHHHHH-HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 007159          437 NWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG-WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT  514 (615)
Q Consensus       437 ~~~~~~~~~-~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~  514 (615)
                      ......-.. ..+.|+...++++..+.+.+.+...+...++.++.. .+...++.++.         +.+++..-.+...
T Consensus       253 ~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~---------i~lGl~~~~~~~~  323 (463)
T KOG2816|consen  253 SLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL---------ISLGLLSEFLQLL  323 (463)
T ss_pred             HHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---------hhHHHHHHHHHHH
Confidence            333332222 346777888999999999999998888888887766 77777887752         2233333333333


Q ss_pred             HhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          515 QLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                      ...+....+................+...........++++|+++++...+..+...++|.+.+.+..
T Consensus       324 ~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  324 LFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            33344444544444444444444444444455666788999999999999999999999999998864

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.56  E-value=1.8e-12  Score=130.21  Aligned_cols=250  Identities=14%  Similarity=0.138  Sum_probs=175.3

Q ss_pred             hhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHH
Q 007159          220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF  299 (615)
Q Consensus       220 ~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~  299 (615)
                      .......+|+.-.+.+++|++..+++.++...+...++..++.|.++||+|||+.-++..++++++.+..- .+  +++.
T Consensus        47 ~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~--~~~~  123 (354)
T PF05631_consen   47 MAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SS--NYPV  123 (354)
T ss_pred             HHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-cc--ccHH
Confidence            34555567777777789999999999999999999999999999999999999999999999988886543 34  7899


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcc-----cccchhhHHHHHH-HHHHHHHHHHhhhHhhhhcCCCc--hHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWI-----PVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGS  371 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l~~~~gw--~~~f~~~~~  371 (615)
                      +++.|++.|++.+..+.+-.+++..-.     |++..+..++... ...++-.+++.+++.++.+..+.  ..+|.....
T Consensus       124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~  203 (354)
T PF05631_consen  124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV  203 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence            999999999999999999988765433     2222333444333 33445556666677777766554  778876666


Q ss_pred             HHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (615)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~  451 (615)
                      +.++..++.....+++..+..+..+..+..            ...++.++++|+++.+.+...++-..++.+.....+.+
T Consensus       204 ~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~------------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL  271 (354)
T PF05631_consen  204 LLAVAAVLILKTWPENYGDTSSSSSLSGSF------------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPAL  271 (354)
T ss_pred             HHHHHHHHHHhcccccCCCcccccchHHHH------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeecee
Confidence            666555555444444332211111111000            11456678899999999999998888887766444433


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT  486 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr  486 (615)
                      +.  +-...-.|++++.+.+..++|+.+..++..+
T Consensus       272 ~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  272 DP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             cC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            31  1123447899999999999999888766554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.50  E-value=3.1e-12  Score=136.88  Aligned_cols=374  Identities=11%  Similarity=0.045  Sum_probs=221.0

Q ss_pred             HHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcC-----CchHHHHHHHHHHHHHHHHHhhhc--cChHH
Q 007159          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPVLGFGVIWWSVATVLTPVAAR--IGLPF  299 (615)
Q Consensus       227 ~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~G-----rk~~l~~~~~l~~i~~~l~~~~~~--~~~~~  299 (615)
                      ....+.+.+++|+++.++....++..+...+ -++.|.++|-+.     ||+-++++.++..++.+.++..+.  .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3456778899999999999998888888766 456699999863     556666677776555555554332  23555


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhccc--ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIP--VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWF  377 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  377 (615)
                      ..++.++..+|.+.....+.+++.|...  +++++...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            6677788899999999999999999874  34467778888888999999999999999999999999988877766665


Q ss_pred             HHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Q 007159          378 ALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLK  456 (615)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~p~~~~~~~g  456 (615)
                      +..+...++.+...........++................++.++.+.+|...+ ..++............-.+..+..+
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~  248 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG  248 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence            554444443111111000000000000000000111224455666676766555 2222211111100000001122345


Q ss_pred             ---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH--Hhc--------cccchH
Q 007159          457 ---FNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT--QLS--------HVRTPA  523 (615)
Q Consensus       457 ---~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~--------~~~~~~  523 (615)
                         +++...+.+..+..++.++|..+..+...+...|+++        ....++.....+.  .+.        .++...
T Consensus       249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~--------~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f  320 (433)
T PF03092_consen  249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIF--------VVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF  320 (433)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH--------HHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence               8888888887777777777776666555444444322        1111111111111  110        011111


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC--------hhHHHHHHHH
Q 007159          524 MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS--------WDDVFKVAVV  595 (615)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g--------~~~~f~~~~~  595 (615)
                      ...-..+.......-..+......+..|+..-|+.+++...+.++|..++..++..+.+..+        .....+++.+
T Consensus       321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~  400 (433)
T PF03092_consen  321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV  400 (433)
T ss_pred             EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            11122223333333344455556777788999999999999999999999999999887644        3444555555


Q ss_pred             HHHHHHHHHHHHhc
Q 007159          596 LYIIGTLVWNLFAT  609 (615)
Q Consensus       596 ~~l~~~l~~~~~~~  609 (615)
                      +.++.+.+..++.+
T Consensus       401 ~~ll~l~ll~lLp~  414 (433)
T PF03092_consen  401 IQLLPLPLLFLLPP  414 (433)
T ss_pred             HHHHHHHHHHHcCC
Confidence            55555544444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.47  E-value=9.6e-13  Score=140.78  Aligned_cols=162  Identities=17%  Similarity=0.239  Sum_probs=131.9

Q ss_pred             HHHhHHHHHhhcCCCc--------hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhc--c
Q 007159          226 MSIAILPMSKEFNWNS--------TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--I  295 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~--------~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~--~  295 (615)
                      .....+.+.++.|.++        ...+.+.++..++..++.++.|++.||+|+|+++.++.++.+++..+......  .
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            3345566666666543        66799999999999999999999999999999999999998888766665321  1


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHH-HHHHHHHHHHhhhHhhhhcC------CCchHHHHH
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQK------FGWPSVFYS  368 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l~~~------~gw~~~f~~  368 (615)
                      +++.+++.+++.|++.+...+....++.+++|+++|++++|+.+ ....+|.++||+++|++.++      +||+++|++
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence            23556778999999999988999999999999999999999997 67889999999999999887      469999998


Q ss_pred             HHHHHHHHHHHHHhhhcCC
Q 007159          369 FGSLGSIWFALWLKKAYSS  387 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~  387 (615)
                      .+++.++..+++++..+++
T Consensus       387 ~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHhCCc
Confidence            8877777666666555543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.46  E-value=5.1e-13  Score=118.94  Aligned_cols=134  Identities=26%  Similarity=0.476  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhccc
Q 007159          248 QSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP  327 (615)
Q Consensus       248 ~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~  327 (615)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.+  +.+.+++.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            4456778889999999999999999999999999888888877776  77888999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Q 007159          328 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       328 ~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      +++|++.+++......+|..++|.+.+.+.+..+|++.|++.+++.++..+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999998877766655555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.46  E-value=1.1e-12  Score=137.65  Aligned_cols=150  Identities=12%  Similarity=0.080  Sum_probs=127.8

Q ss_pred             HHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 007159          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (615)
Q Consensus       227 ~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l  306 (615)
                      ....+.+.++++.+..+.+++.+++.++..++.++.|++.||+|||+.+.++.++..++.++..+.+..+...+++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            34455567889999999999999999999999999999999999999999998888888877766653223334556778


Q ss_pred             HHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHH
Q 007159          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (615)
Q Consensus       307 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  376 (615)
                      .|++.+...+....++.|.+|+++|++++|+......+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888888888888899999999999999999999999999999999999999999999998877665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=6e-12  Score=133.91  Aligned_cols=159  Identities=19%  Similarity=0.202  Sum_probs=130.9

Q ss_pred             HHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      ....++.+.++.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.+  +.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence            33445555556665  3456777888899999999999999999999999998888888887777766  6667788899


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      +.|++.+...+.....+.+.+|+++|++++++++....+|..+++.+.|.+.+..||++.|++.+++.++..++.....+
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999888777766655555444


Q ss_pred             CCC
Q 007159          386 SSP  388 (615)
Q Consensus       386 ~~~  388 (615)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=2.9e-12  Score=137.32  Aligned_cols=151  Identities=11%  Similarity=0.079  Sum_probs=128.4

Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcc
Q 007159          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~  313 (615)
                      ..+.+.+..++|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.++++  +.+.+++.+++.|++.+.
T Consensus       254 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~  331 (420)
T PRK09528        254 FATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPF  331 (420)
T ss_pred             HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHH
Confidence            334466777899999999999999999999999999999999999999998888888777  677788889999999888


Q ss_pred             hhhHHHHHhhhcccccchhhHHHH-HHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYS  386 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  386 (615)
                      ..+....++.+.+|++.++...+. ++....+|.+++|.+.|++.+.+||+..|++.+++.++..++.+...++
T Consensus       332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888888999999998888877655 5677889999999999999999999999998888777666555554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.41  E-value=1.5e-11  Score=130.54  Aligned_cols=154  Identities=12%  Similarity=0.107  Sum_probs=122.8

Q ss_pred             HHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          226 MSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       226 ~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      +....|. +.+++|++..+.+++.+...++.+++.++.|+++||+|+|+.+..+.+...+......+.+  +.+.+++.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            3344555 4567899999999998888888888999999999999999988877666555544444444  566677788


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK  382 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  382 (615)
                      ++.+++.+...+....+..+.+| +++++++++++....+|..+||.++|.+.+.+||+..|++.+++.++..+..+.
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            88888888777777888889886 569999999999999999999999999999999999998777666655544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=5.9e-12  Score=134.25  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=129.1

Q ss_pred             HHHHhHHHHHhhcCCCch----hhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHH
Q 007159          225 NMSIAILPMSKEFNWNST----TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (615)
Q Consensus       225 ~~~~~~~~i~~~~g~s~~----~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~l  300 (615)
                      .+.+..+.+..+.+.+..    ..+++.++..++..++.++.|++.||+|||+.+..+.++..++.+...+.+  +.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHH
Confidence            344555555555433332    245666777888889999999999999999999999888877777666665  66778


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~  380 (615)
                      ++.+++.|++.+...+...+.+.+..+++++++.+++......+|..+||.++|.+.+..||++.|++.+++.++..++.
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999889999999999999999999999999999999999999999888777766655


Q ss_pred             Hhhhc
Q 007159          381 LKKAY  385 (615)
Q Consensus       381 ~~~~~  385 (615)
                      +...+
T Consensus       395 ~~~~~  399 (408)
T PRK09874        395 WNSLR  399 (408)
T ss_pred             HHHHH
Confidence            54433

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=1.8e-11  Score=129.87  Aligned_cols=153  Identities=20%  Similarity=0.235  Sum_probs=128.8

Q ss_pred             HHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      .....+.+.++.+.+.  .++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+  +.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHHHH
Confidence            3445556666666653  56677778888899999999999999999999999988888887777766  6677788889


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK  382 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  382 (615)
                      +.|++.+...+...+.+.+.+++++|++++|+++....+|..+||.+.+++.++.||++.|++.+++.++..++.+.
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999998888888899999999999999999999999999999999999999999999999888777666555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=1.4e-11  Score=131.35  Aligned_cols=155  Identities=14%  Similarity=0.029  Sum_probs=126.1

Q ss_pred             HHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          225 NMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       225 ~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      ......|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|+|+.+..+.+...++.++..+.+  +.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            344456778888999999999999999999999999999999999999998887777666666665555  566677777


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHHHHHH
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~  381 (615)
                      ++.|++.+...+...+++.+.+|+++|++.+|+.+....+|..+||.++|.+.++.+ |...+++...+.++..++.+
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            888988888888999999999999999999999999999999999999999988754 55555555444444333333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.39  E-value=2e-11  Score=129.09  Aligned_cols=156  Identities=11%  Similarity=0.012  Sum_probs=135.3

Q ss_pred             hhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHH
Q 007159          220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF  299 (615)
Q Consensus       220 ~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~  299 (615)
                      ......+....|.+.+++|.+..++|++.++..++.+++.++.+++.||+|.|+++.++.++..+..++.++++  +.+.
T Consensus       218 ~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~  295 (382)
T TIGR00902       218 QGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--AFPL  295 (382)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--hHHH
Confidence            34444455566777788999999999999999999999999999999999999999999999999999888887  7788


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHH-HHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  378 (615)
                      +++.+++.|+..+...+....++.+. |++++++..++++ ...++|.++|+.++|++.+++|+ ..|++.+++.++..+
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            88899999999999999999999998 8889999999986 46789999999999999999986 667777776665443


Q ss_pred             H
Q 007159          379 L  379 (615)
Q Consensus       379 ~  379 (615)
                      +
T Consensus       374 ~  374 (382)
T TIGR00902       374 L  374 (382)
T ss_pred             H
Confidence            3

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.9e-11  Score=126.83  Aligned_cols=163  Identities=23%  Similarity=0.387  Sum_probs=143.0

Q ss_pred             HHHhhhhhHHHHhHHHHHhhc-CCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCch-HHHHHHHHHHHHHHHHHhhhc
Q 007159          217 LLCNMDRVNMSIAILPMSKEF-NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP-VLGFGVIWWSVATVLTPVAAR  294 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~~i~~~~-g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~-~l~~~~~l~~i~~~l~~~~~~  294 (615)
                      +........+....|.+.++. |.+..+.+++.+...++..++.++.+++.||+|+|+ .+..+.++..++.++..+.+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  263 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-  263 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-
Confidence            333444455556667666554 899999999999999999999999999999999999 99999999999998888777 


Q ss_pred             cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHH
Q 007159          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (615)
Q Consensus       295 ~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~  374 (615)
                       +.+.+.+..++.|++.+...+...+++.+..|+++|++.+++......+|..+++.+.+.+.+..+|++.+++.+++.+
T Consensus       264 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         264 -SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             -cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence             6778889999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHH
Q 007159          375 IWFALWL  381 (615)
Q Consensus       375 ~~~~~~~  381 (615)
                      +..++..
T Consensus       343 i~~i~~~  349 (352)
T cd06174         343 LAALLLL  349 (352)
T ss_pred             HHHHHhe
Confidence            6665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03545 putative arabinose transporter; Provisional

Probab=99.38  E-value=3.2e-11  Score=127.95  Aligned_cols=152  Identities=14%  Similarity=0.079  Sum_probs=121.4

Q ss_pred             HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH-HHhhhccChHHHHHHHHHHH
Q 007159          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAARIGLPFLLIMRAFMG  308 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l-~~~~~~~~~~~ll~~r~l~G  308 (615)
                      .+.+.+++|.+..+.+++.++..++..++.++.|++.||+++|.++ .+..+..++..+ ....+  +.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN--SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence            3445566899999999999999999999999999999999988654 444444444333 33344  5667778888999


Q ss_pred             hhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 007159          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       309 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ++.+...+.....+.+..| ++|++++|++.....+|..+||+++|.+.+++|++..|++.+++.++..++.....+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9988777778888888875 688999999999999999999999999999999999999888777766665555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=2.6e-11  Score=131.81  Aligned_cols=169  Identities=12%  Similarity=0.039  Sum_probs=122.7

Q ss_pred             HHHHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          213 FSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      ++..++............|.+ .+++|++..+.++..+...++..++.+++|+++||+|+|+.+.....+..++..+..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~  343 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY  343 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH
Confidence            333344444444455566765 5679999999999999999999999999999999999998776655444433322222


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHH-HHHHHhhhHhhhhc------------
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQ------------  358 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~l~~~l~~------------  358 (615)
                      ....+.+.+.+.+++.|++.............|.+|+++++.+.|+.+....+ |.+++|.+.|++.+            
T Consensus       344 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~  423 (467)
T PRK09556        344 QHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYT  423 (467)
T ss_pred             HhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccc
Confidence            22225555667778888654444444446677999999999999999998886 77999999999999            


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHH
Q 007159          359 KFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       359 ~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      ..||+..|++.+++.++..+..+
T Consensus       424 ~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        424 LTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHH
Confidence            67899999887666665544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.36  E-value=1.2e-11  Score=132.49  Aligned_cols=158  Identities=14%  Similarity=0.031  Sum_probs=133.2

Q ss_pred             HHHhHHHHHhh-cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          226 MSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       226 ~~~~~~~i~~~-~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      +....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+  +++.++++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence            34456766666 899999999999999999999999999999998888888888888888877776666  666677888


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  384 (615)
                      ++.|++.+...+...+++.+..|++.|++++|++.....+|..+||.+.|++.+.+|++..+++.+++.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            88999988887888899999999999999999999999999999999999999999999888877776666555554443


Q ss_pred             c
Q 007159          385 Y  385 (615)
Q Consensus       385 ~  385 (615)
                      +
T Consensus       400 ~  400 (417)
T PRK10489        400 G  400 (417)
T ss_pred             c
Confidence            3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=3.7e-11  Score=135.17  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhh
Q 007159          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK  324 (615)
Q Consensus       245 g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~  324 (615)
                      .+...+..++.+++.++.|+++||+|||++++++.++.+++.+++++.+  +...+++.+++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667788999999999999999999999999999999998888877  56667888888899888889999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 007159          325 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK  382 (615)
Q Consensus       325 ~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  382 (615)
                      ++|.++|++++|+..+...+|.++||++++.+.+. +...+|++.+++.++.+++.++
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~  732 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK  732 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988764 4556676666665554444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.36  E-value=6e-11  Score=129.77  Aligned_cols=162  Identities=14%  Similarity=0.130  Sum_probs=117.8

Q ss_pred             hhhhHHHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH-HHhhhccChH
Q 007159          221 MDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAARIGLP  298 (615)
Q Consensus       221 ~~~~~~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l-~~~~~~~~~~  298 (615)
                      .....+...+|.+. +++|++..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. .......+..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            34444455667655 567998888888888889999999999999999999999988877654433322 2222222466


Q ss_pred             HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-CchHHHHHHHHHHHHHH
Q 007159          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWF  377 (615)
Q Consensus       299 ~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~~~~  377 (615)
                      .+++.+++.|++.+...+....++.+.+|++.|+.++++......+++.++|.+.+++.+.. +|+..+++..+..++.+
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            67788888888877777788888999999999999999855556667788999999888754 46766665555444444


Q ss_pred             HHHHh
Q 007159          378 ALWLK  382 (615)
Q Consensus       378 ~~~~~  382 (615)
                      +..++
T Consensus       424 ~~~~~  428 (490)
T PRK10642        424 ITGVT  428 (490)
T ss_pred             HHHHH
Confidence            43333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=8.6e-12  Score=131.73  Aligned_cols=158  Identities=12%  Similarity=0.177  Sum_probs=120.5

Q ss_pred             HHHHhhhhhHHHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHH--HHHHhh
Q 007159          216 FLLCNMDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT--VLTPVA  292 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~--~l~~~~  292 (615)
                      .+.............|.+. +++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..  ++..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444555666665 7789999999999999999999999999999999999998775554443332  222222


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHH-HHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFG  370 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~  370 (615)
                      ...+.+.+++..++.|++.+...+...+++.|.+|+++|++++++. ..+..+|..++|.++|++.++.| |++.++...
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            2225566677788889998889999999999999999999999984 55667899999999999999888 888777655


Q ss_pred             HHH
Q 007159          371 SLG  373 (615)
Q Consensus       371 ~~~  373 (615)
                      +..
T Consensus       388 ~~~  390 (394)
T TIGR00883       388 ALA  390 (394)
T ss_pred             HHH
Confidence            443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.36  E-value=4.7e-11  Score=125.66  Aligned_cols=150  Identities=12%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             hHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 007159          229 AILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFM  307 (615)
Q Consensus       229 ~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~  307 (615)
                      ..|. +.+++|.++.+.+++.+...+...++.++.|++.||+|+|+++.++.++..+..++..+.+  +.+.+++.+++.
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  298 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLLN  298 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3444 4577899999999998888888888899999999999999998888776666555555555  566677788899


Q ss_pred             HhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 007159          308 GIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       308 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      |++.+...+....++.+..| +++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..++..
T Consensus       299 g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99988888888889999886 46779999999999999999999999999999999999988777666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10054 putative transporter; Provisional

Probab=99.35  E-value=5.4e-11  Score=126.40  Aligned_cols=173  Identities=16%  Similarity=0.110  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~  503 (615)
                      +.++.+.+..++...+.+....++|.|+++.+|++..+.|+..+...++.+++.++.|+++||+++|+.+..+.      
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~------   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI------   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH------
Confidence            35677777888888888999999999999889999999999999999999999999999999999997544221      


Q ss_pred             HHHHHHHHHHHHhccccchHHHHHHH-HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          504 IGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       504 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                         +...+........+..+..+.+. +.+.......+.......+..++++|+++.|+.+...++|..++|++++++.+
T Consensus        81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         81 ---TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             ---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111111111223333333322 22222222222233334566678899999999999999999999999999876


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHH
Q 007159          583 RGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       583 ~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                       .+|+..|.+.+++++++.++..+
T Consensus       158 -~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        158 -QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             -hccCcHHHHHHHHHHHHHHHHHH
Confidence             68999999888887776554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.35  E-value=5e-11  Score=126.05  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=126.0

Q ss_pred             HHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 007159          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (615)
Q Consensus       227 ~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l  306 (615)
                      ...+|.+.++.|.+..++|++.+...++.++++++.|++.||+|+|+++..+..+..++.+...  .  . .......++
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~~l  294 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHHHH
Confidence            3456777778899999999999999999999999999999999999999888887777665432  2  1 223456677


Q ss_pred             HHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Q 007159          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       307 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      .|++.....|...+.+.+..|+++++...+......++|.++||.++|++.+++||++.|++.+.+.++..+..++.
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            78877778899999999999888888888888888999999999999999999999999998888777666555554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.34  E-value=1.7e-09  Score=111.77  Aligned_cols=336  Identities=11%  Similarity=0.088  Sum_probs=219.6

Q ss_pred             HHhHHHHHhh-cCCCchhhH-HHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          227 SIAILPMSKE-FNWNSTTVG-LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       227 ~~~~~~i~~~-~g~s~~~~g-~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      +...|.+.+. .|++..++. -+.-+..=.++...++...+.|..+.|++++++.+...+..+++.+.+  +...+-+..
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q  101 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQ  101 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHH
Confidence            3345555554 899888875 566667777888889999999999999999999999988888888887  888899999


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC--CCchHHHHHHHHHHHHHHHHHHh
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGSIWFALWLK  382 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~  382 (615)
                      ++.|++.+. ..+..+++-...|+++..++.+...++.-+|..++.++|-.++..  ..++...++......+.+++.++
T Consensus       102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999776 678888998889999999999999999999999999998887763  33444544433333333333333


Q ss_pred             hhcCCCCC--Cccc---------cHHHHhhhhcCC----cc---ccc-------cccccHHHHhhhhhHHHHHHHHHHHH
Q 007159          383 KAYSSPKE--DPEL---------RAEEKRHILGGS----IS---KEA-------VSVIPWKLILSKAPVWALIISHFCHN  437 (615)
Q Consensus       383 ~~~~~~~~--~~~~---------~~~~~~~~~~~~----~~---~~~-------~~~~~~~~l~~~~~~~~~~l~~~~~~  437 (615)
                      .+..++..  ++..         +.+...+..+..    ..   ...       .-.+.++...++|.++...+-..+..
T Consensus       181 LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at  260 (412)
T PF01770_consen  181 LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT  260 (412)
T ss_pred             cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            22211100  0000         000000000000    00   000       01234555667888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 007159          438 WGTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ  515 (615)
Q Consensus       438 ~~~~~~~~~~p~~~~~~--~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  515 (615)
                      .++..+.+|......+.  -+-.....|.+-+...+.+.++.+..|++..++.+..       ...+....++.+.+++.
T Consensus       261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~-------~l~l~~~S~l~a~~L~l  333 (412)
T PF01770_consen  261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG-------ELALGVFSLLQAGLLFL  333 (412)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH-------HHHHHHHHHHHHHHHHH
Confidence            88888888888887764  2334445688888888888889999998855544432       12333333344444555


Q ss_pred             hccccchHHHHHHHHHHh-hhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 007159          516 LSHVRTPAMAVLCMACSQ-GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVF  572 (615)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~i  572 (615)
                      +...+..+...+..++.. ............++.....+.-|.++|+++.+..+-..+
T Consensus       334 m~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti  391 (412)
T PF01770_consen  334 MSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI  391 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence            555666665555544444 444444445555777777888899999987766555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.33  E-value=3.1e-11  Score=132.27  Aligned_cols=150  Identities=12%  Similarity=0.148  Sum_probs=117.2

Q ss_pred             HHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          226 MSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       226 ~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      ....+|.+. +++|++..+++++.+...++.+++.++.|+++||+|+|+++.++.++..+..++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445677766 5899999999999999999999999999999999999999888877666655444333322333344445


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      ++.+.......+...+++.+.+|+++|++++++......+|..+||+++|.+.+.+||+..++..+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55444444445677788999999999999999999999999999999999999999999888665544333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=7.8e-11  Score=124.20  Aligned_cols=165  Identities=15%  Similarity=0.017  Sum_probs=115.8

Q ss_pred             HHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCch--HHHHHHHHHH----HHHH
Q 007159          215 AFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP--VLGFGVIWWS----VATV  287 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~--~l~~~~~l~~----i~~~  287 (615)
                      ..++.......+....|.+ .+++|.+..+.+++.+...++..++.++.|++.||+++|+  ..........    .+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence            3344444444555566665 4668999999999999999999999999999999999986  1111111111    1111


Q ss_pred             HHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHH
Q 007159          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVF  366 (615)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f  366 (615)
                      ........+.+..+...++.+.+.+ ..+...+++.+.+|+++|++++++.+....+|..++|.+.+.+.+..| |++.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~  381 (399)
T TIGR00893       303 MFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGAL  381 (399)
T ss_pred             HHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHH
Confidence            1111111123333333344444444 789999999999999999999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHHHHHHH
Q 007159          367 YSFGSLGSIWFALW  380 (615)
Q Consensus       367 ~~~~~~~~~~~~~~  380 (615)
                      ++.+++.++..+..
T Consensus       382 ~~~~~~~~~~~~~~  395 (399)
T TIGR00893       382 MVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766555443

>PRK03699 putative transporter; Provisional

Probab=99.31  E-value=9e-11  Score=124.70  Aligned_cols=157  Identities=13%  Similarity=0.167  Sum_probs=125.9

Q ss_pred             hhhhHHHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHH
Q 007159          221 MDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF  299 (615)
Q Consensus       221 ~~~~~~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~  299 (615)
                      .....+....|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+++.....+..+..++....+  +.+.
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~  296 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSH  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchH
Confidence            33344455677765 67899999999999999999999999999999999999998887777766666555555  4555


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL  379 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~  379 (615)
                      +.+..++.|++.+..++...++..+..+ +++++..+.......+|..++|.+.|++.+..||+..+++.+++..+..+.
T Consensus       297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        297 LLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            6667788898888888888888777764 556788888888899999999999999999999999998777766555443


Q ss_pred             H
Q 007159          380 W  380 (615)
Q Consensus       380 ~  380 (615)
                      +
T Consensus       376 ~  376 (394)
T PRK03699        376 C  376 (394)
T ss_pred             H
Confidence            3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.31  E-value=4.7e-11  Score=129.52  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~  286 (615)
                      ..+...++..+........+....|.+.+++|++..+.++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33444444444444444445566788888999999888999999999999999999999999999999998888877777


Q ss_pred             HHHHh---hhcc------ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhh
Q 007159          287 VLTPV---AARI------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (615)
Q Consensus       287 ~l~~~---~~~~------~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~  357 (615)
                      ++..+   ....      +...+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66552   1111      12222223333333223334666777899999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 007159          358 QKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       358 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ++.+|++.|++.+++.++..++.+...+
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecc
Confidence            9899999999888877766666554444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.30  E-value=7.6e-11  Score=127.66  Aligned_cols=163  Identities=13%  Similarity=0.050  Sum_probs=111.2

Q ss_pred             hhhHHHHhHHHHHh-hcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc--CCchHH-HHHHHHHHHHHHHHHhhhccCh
Q 007159          222 DRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVL-GFGVIWWSVATVLTPVAARIGL  297 (615)
Q Consensus       222 ~~~~~~~~~~~i~~-~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~--Grk~~l-~~~~~l~~i~~~l~~~~~~~~~  297 (615)
                      ........+|.+.+ ++|++..+.+++..++.++..++.++.|+++||+  +||+.. +....+..++.++..+....+.
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP  347 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence            33445556777655 4789999999999999999999999999999999  555432 2222333333333323222234


Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHH-HHhhhHhhhhcCCCchHHHHHHHHHHHHH
Q 007159          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSV-TGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (615)
Q Consensus       298 ~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  376 (615)
                      +..++..++.|.+..........+..+.+|+++|++++|+.+....+|.. +||.+.|.+.+++||+..|++.++++++.
T Consensus       348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~  427 (452)
T PRK11273        348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            33444455555543333334445677999999999999999988888765 47999999999999999998877766655


Q ss_pred             HHHHHhhh
Q 007159          377 FALWLKKA  384 (615)
Q Consensus       377 ~~~~~~~~  384 (615)
                      ++......
T Consensus       428 ~~~~~~~~  435 (452)
T PRK11273        428 VILLIVVM  435 (452)
T ss_pred             HHHHHHHh
Confidence            55444333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.30  E-value=2.9e-11  Score=130.89  Aligned_cols=156  Identities=15%  Similarity=0.159  Sum_probs=124.5

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc--CCchHHHH--HHHHHHHHHHHHHhhhccC
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVLGF--GVIWWSVATVLTPVAARIG  296 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~--Grk~~l~~--~~~l~~i~~~l~~~~~~~~  296 (615)
                      .........++.+.+++|++..+.+++.++..++.+++.++.|++.||.  ++|+...+  +.++.+++.+++.+.+  +
T Consensus       255 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~  332 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG--D  332 (455)
T ss_pred             HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--h
Confidence            3333444566777788999999999999999999999999999999984  33433333  3333344444555555  6


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC-CchHHHHHHHHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSI  375 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~~  375 (615)
                      ++.+++.+++.|++.+...+...+++.+.+|++++++.+++++....+|.++||.++|.+.+.. +|++.|++.+++.++
T Consensus       333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS  412 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence            7778889999999999999999999999999999999999999999999999999999999887 499999887776655


Q ss_pred             HHH
Q 007159          376 WFA  378 (615)
Q Consensus       376 ~~~  378 (615)
                      ..+
T Consensus       413 ~~~  415 (455)
T TIGR00892       413 AGL  415 (455)
T ss_pred             HHH
Confidence            444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=1.5e-10  Score=124.69  Aligned_cols=164  Identities=13%  Similarity=-0.000  Sum_probs=112.2

Q ss_pred             hhhhHHHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc--CCchHH-HHHHHHHHHHHHHHHhhhccC
Q 007159          221 MDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVL-GFGVIWWSVATVLTPVAARIG  296 (615)
Q Consensus       221 ~~~~~~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~--Grk~~l-~~~~~l~~i~~~l~~~~~~~~  296 (615)
                      .....+....|.+. +++|++..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+...+.......+
T Consensus       257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK11663        257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS  336 (434)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc
Confidence            33344445566655 67899999999999999999999999999999998  333322 222211121111111112113


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  376 (615)
                      ...+.+..+..|++...........+.+.+|+++|++++|+.+....+|.+++|.+.|++.+.+||+..|++.+++.++.
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            33333444444544332233344567888989999999999999999999999999999999999999999888887776


Q ss_pred             HHHHHhhh
Q 007159          377 FALWLKKA  384 (615)
Q Consensus       377 ~~~~~~~~  384 (615)
                      .+..+...
T Consensus       417 ~~~~~~~~  424 (434)
T PRK11663        417 ALLLLPFL  424 (434)
T ss_pred             HHHHHHHH
Confidence            66555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.28  E-value=3.2e-10  Score=120.39  Aligned_cols=163  Identities=13%  Similarity=0.008  Sum_probs=124.9

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHH
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~l  300 (615)
                      ..........|.+.+++|.+..+.|...+++.++.+++.++.|++.||+|+|+.+..+..+..++.++....+. +...+
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHHHH
Confidence            34444555667777778999999999999999999999999999999999999998888777777665543331 22222


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFA  378 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~  378 (615)
                        .-++.|++.+...+.......+..+ ++++++.+++.+....++..+||.+.|++.+..| |...|++.++..++..+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2345688888888887777777775 5788999999999999999999999999999876 77777776666665555


Q ss_pred             HHHhhhcC
Q 007159          379 LWLKKAYS  386 (615)
Q Consensus       379 ~~~~~~~~  386 (615)
                      ......++
T Consensus       376 ~~~~~~~~  383 (393)
T PRK09705        376 ITLRFAPA  383 (393)
T ss_pred             HHHHhccc
Confidence            54444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=8.3e-11  Score=119.58  Aligned_cols=178  Identities=15%  Similarity=0.094  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc--CCch-HHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKP-VLGFGVIWWS  283 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~--Grk~-~l~~~~~l~~  283 (615)
                      .+..++++.++.+..+..+.--.|. +.|..|+|...+++..++|-++.+.+.+++|+++||+  |||. +-++.+++..
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            4556666777777888887777666 5677899999999999999999999999999999995  5654 4445555566


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHH-HHHHHhhhHhhhhcCCCc
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~l~~~l~~~~gw  362 (615)
                      ++.+...++++.++++..++.++.|+..-...........|..|++-.|.+.|+.....++ |.+.+....+++.+.+||
T Consensus       333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW  412 (448)
T COG2271         333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGW  412 (448)
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence            6666666777656788889999999988888777888889999999999999999999998 999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhc
Q 007159          363 PSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       363 ~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ...|+++.+.+++..++++....
T Consensus       413 ~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         413 DGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHh
Confidence            99998877776666555554443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.26  E-value=2.9e-10  Score=122.28  Aligned_cols=178  Identities=15%  Similarity=0.188  Sum_probs=122.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccHHHHHHHH
Q 007159          423 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIM  501 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~-g~~~~~~~~~~~~~  501 (615)
                      .+.++.++...+...+.++++..++|.|+++.+|++..+++.+...+.....++.+++|+++||+ |+|+.+..+.  .+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~--il   85 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA--LL   85 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH--HH
Confidence            34566777777778888999999999999998999999999999999999999999999999999 9986544322  11


Q ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc--hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007159          502 QSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR--YAGVLLGLSNTAGVLAGVFGTAATGY  579 (615)
Q Consensus       502 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~gl~~~~~~lg~~igp~l~G~  579 (615)
                      ..++.     .++...........+.......+.+...+.......+..+++  +|+++.++.+...++|+.++|.+.|+
T Consensus        86 ~~lg~-----lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~  160 (493)
T PRK15462         86 MAIGH-----VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY  160 (493)
T ss_pred             HHHHH-----HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence            11111     111111111111222111222222222222223344455553  68999999999999999999999999


Q ss_pred             eeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          580 ILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       580 l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      +.+..||+..|.++++..+++.+.+...
T Consensus       161 L~~~~Gw~~~F~iaaigm~l~li~~~~~  188 (493)
T PRK15462        161 AQEEYSWAMGFGLAAVGMIAGLVIFLCG  188 (493)
T ss_pred             HHhhhChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999887776666665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=4.1e-10  Score=115.88  Aligned_cols=179  Identities=16%  Similarity=0.192  Sum_probs=143.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      |++.+........+........+++.-|.+.+..|++...++++.-+|.++..++..+.|++.|| +.|+.+.....+.+
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a  287 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA  287 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence            33444444444445555555666777888889999999999999999999999999999999999 99999998888888


Q ss_pred             HHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCch
Q 007159          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      +..+.+.+..+ +.+..++.-++.|++...........+++ ..++.+..+.+++....++|..+|..++|.+.+++|+.
T Consensus       288 ~~~l~l~~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~  365 (394)
T COG2814         288 LALLALTFTGA-SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA  365 (394)
T ss_pred             HHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            88777766653 35566667777888877777777777777 34789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc
Q 007159          364 SVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       364 ~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ...++.+++.++...+.+...+
T Consensus       366 ~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         366 ATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888887776666555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.25  E-value=4.2e-10  Score=119.78  Aligned_cols=171  Identities=18%  Similarity=0.252  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q 007159          427 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF  506 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~  506 (615)
                      +.+....++...+.+....++|.|+++.+|++..+.|+..+...+...+..++.|+++||+++|+.+..+.         
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~---------   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGM---------   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHH---------
Confidence            45556777778888888999999998889999999999999999999999999999999999986544322         


Q ss_pred             HHHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC
Q 007159          507 LGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS  585 (615)
Q Consensus       507 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g  585 (615)
                      +..+.........+.++ +.+..++.+.+.....+.......+..++++++++.|+.+....+|..+||.++|++. ..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            11111111111223333 3333333333332333333344556677899999999999999999999999999998 679


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 007159          586 WDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       586 ~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      |+..|++.++++++..++..+.
T Consensus       163 ~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        163 FRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998887777665544433

>TIGR00897 2A0118 polyol permease family

Probab=99.25  E-value=4.8e-10  Score=119.45  Aligned_cols=162  Identities=16%  Similarity=0.205  Sum_probs=122.2

Q ss_pred             HhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHH-HHHHHHHHHHHHHHhhh---c
Q 007159          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAA---R  294 (615)
Q Consensus       219 ~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~-~~~~l~~i~~~l~~~~~---~  294 (615)
                      .......+....|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.+.+   .
T Consensus       234 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~  313 (402)
T TIGR00897       234 NTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG  313 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3344444556678888889999999999999999999999999999999999888764 33333333333322211   1


Q ss_pred             cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHH
Q 007159          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (615)
Q Consensus       295 ~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~  374 (615)
                      .+.+.+++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.+++.+.+.+||...|++.+++.+
T Consensus       314 ~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~  391 (402)
T TIGR00897       314 HSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYV  391 (402)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            2455667778888988877644 455666765 56899999999999999999999999999999999999998887776


Q ss_pred             HHHHHHHh
Q 007159          375 IWFALWLK  382 (615)
Q Consensus       375 ~~~~~~~~  382 (615)
                      +..++..+
T Consensus       392 i~~~~~~~  399 (402)
T TIGR00897       392 VSAFLTAF  399 (402)
T ss_pred             HHHHHHHH
Confidence            65555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.24  E-value=2.3e-08  Score=105.43  Aligned_cols=363  Identities=10%  Similarity=0.006  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhc-CCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEF-NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      ..+....++...+.-++..+.+.+..+. .-+..-.+...-.-.+..+++.+..|.+.||..|.+++..+.++--++..+
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~   84 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA   84 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence            3445566667777777777777766665 334444555555666777888899999999999999887776554333322


Q ss_pred             HH------hhhcc-----Ch--HHHHHHHHHHHhhhcchhhHH-HHHhhhcc------cccchhhHHHHHHHHHHHHHHH
Q 007159          289 TP------VAARI-----GL--PFLLIMRAFMGIGEGVAMPAM-NNMLSKWI------PVSERSRSLAFVYSGMYLGSVT  348 (615)
Q Consensus       289 ~~------~~~~~-----~~--~~ll~~r~l~G~~~~~~~~~~-~~~i~~~~------~~~~r~~~~~~~~~~~~lG~~i  348 (615)
                      .+      +....     +.  ..+++.-.+.|........+. .++=-||.      +++.+.+.++...-.--+.-++
T Consensus        85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll  164 (432)
T PF06963_consen   85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL  164 (432)
T ss_pred             HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence            11      11110     11  112222222222222221111 11122332      3455677788888888899999


Q ss_pred             HhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh-------hcCCCCCCccccHHHHhhhh-cCCccc-----------
Q 007159          349 GLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK-------AYSSPKEDPELRAEEKRHIL-GGSISK-----------  409 (615)
Q Consensus       349 g~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------  409 (615)
                      +|++.|.+....+.....++.++..++...+=+..       .|.-..+++....+...... ......           
T Consensus       165 aPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (432)
T PF06963_consen  165 APLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNP  244 (432)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHH
Confidence            99999999998888877776666655544332111       11111110000000000000 000000           


Q ss_pred             cccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007159          410 EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS  489 (615)
Q Consensus       410 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~  489 (615)
                      -......|+..++++.+...+ ...+.++....+-..+..|+... |+++...|.+-+...+.++.+.++.+++.+|+|.
T Consensus       245 ~~~~~~~w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGl  322 (432)
T PF06963_consen  245 LRTIIRGWRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGL  322 (432)
T ss_pred             HHHHhccHHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            001123566666666544444 33344444555666778888885 9999999999999999999999999999999997


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhcccc--ch--HHHHHHHHHH-hhhhhhhhhhhhhhhhccCcchhhHHHHHHHH
Q 007159          490 KGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TP--AMAVLCMACS-QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNT  564 (615)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~  564 (615)
                      .|.-..+.  ... ..++..+...+.....+  ..  ..++....+. .+..++-........+.+++++||+..|+.+.
T Consensus       323 vr~G~~~l--~~q-~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~s  399 (432)
T PF06963_consen  323 VRAGLWSL--WWQ-WVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNS  399 (432)
T ss_pred             hhhHHHHH--HHH-HHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHH
Confidence            76544332  111 11222222222222211  11  1112222222 22333333444456667888999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 007159          565 AGVLAGVFGTAAT  577 (615)
Q Consensus       565 ~~~lg~~igp~l~  577 (615)
                      ..++...+.-.+.
T Consensus       400 l~~lf~ll~~~~~  412 (432)
T PF06963_consen  400 LQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888766554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.23  E-value=3.8e-10  Score=117.30  Aligned_cols=167  Identities=17%  Similarity=0.317  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 007159          430 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP  509 (615)
Q Consensus       430 ~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  509 (615)
                      ++..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.       .+...
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~-------~~~~~   74 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGL-------LLFAL   74 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH-------HHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehh-------hhhhh
Confidence            34455666666677777786777779999999999999999999999999999999999997443221       11111


Q ss_pred             HHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHH
Q 007159          510 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDV  589 (615)
Q Consensus       510 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~  589 (615)
                      ...+..+. .+.+.+.+..++.+.+.....+.......+..++++|+++.++.+....+|..++|.+++++.+..+|+..
T Consensus        75 ~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~  153 (352)
T PF07690_consen   75 GSLLLAFA-SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA  153 (352)
T ss_dssp             HHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred             HHHHhhhh-hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence            11111111 34443444444444444445555555566677778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007159          590 FKVAVVLYIIGTLVW  604 (615)
Q Consensus       590 f~~~~~~~l~~~l~~  604 (615)
                      |++.+++.++..++.
T Consensus       154 ~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  154 FLISAILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhH
Confidence            999999998887753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.23  E-value=1.7e-09  Score=118.14  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=117.6

Q ss_pred             HHHHHhhcCCCchhhHHHHH-HHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH---HhhhccChHHHHHHHH
Q 007159          230 ILPMSKEFNWNSTTVGLIQS-SFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMRA  305 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s-~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~---~~~~~~~~~~ll~~r~  305 (615)
                      .|.+.+++|++..+++++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..++.   +... .+.+.+.+..+
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~~  324 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            44456779999999999974 6668999999999999999999888777666555544322   2221 24444455566


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      +..++.+...+...++..+..+++.+++.+++.+....+|..+++.+.|++.+.+||+..|.+.+++.++..++....
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666677788888999888899999999999999999999999999999999999988777776665555444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.23  E-value=9.9e-11  Score=124.36  Aligned_cols=139  Identities=16%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             HhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH-HHhhhccChHHHHHHHH
Q 007159          228 IAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAARIGLPFLLIMRA  305 (615)
Q Consensus       228 ~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l-~~~~~~~~~~~ll~~r~  305 (615)
                      ...|. +.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.++..+..+. .....  +.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHHHH
Confidence            34444 45678999999999999999999999999999999999999988887765433332 22222  4555666667


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHH
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYS  368 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~  368 (615)
                      +.|++.+...+...+++.+.+|+++|++++|+.+....+|..+||+++|++.++.| |+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77777777778888999999999999999999999999999999999999999988 8776654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.23  E-value=4.3e-10  Score=120.74  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=107.9

Q ss_pred             HHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      +...+|.+.++.|.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++..+..++....+..+...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456777777899999999999999999999999999999999999999888877766655444333222222222222


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHH
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~  368 (615)
                      ..+++.....+....++.|.+|+++|++++|+......+|..+||.+.+++.+.+|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            222333333456667889999999999999999999999999999999999998887654433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.23  E-value=4e-10  Score=122.53  Aligned_cols=176  Identities=14%  Similarity=0.092  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKI  500 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~--~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~~~~  500 (615)
                      +.++.+.+..++..+++++...++|.|+++.  +|++..+++.+.+...++..++.+++|+++|| +|+|+.+..+.   
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~---   86 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG---   86 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH---
Confidence            3566777777887889999999999999887  89999999999999999999999999999999 79996544221   


Q ss_pred             HHHHHHHHHHHHHHHhccccch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcc---hhhHHHHHHHHHHHHHHHHHHHH
Q 007159          501 MQSIGFLGPAFFLTQLSHVRTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPR---YAGVLLGLSNTAGVLAGVFGTAA  576 (615)
Q Consensus       501 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~gl~~~~~~lg~~igp~l  576 (615)
                            ++.++....+...... .+.+...+.+.+.+...+.......+..+++   .|+++.++.+...++|..+||++
T Consensus        87 ------~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l  160 (475)
T TIGR00924        87 ------IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL  160 (475)
T ss_pred             ------HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence                  1111111111122222 2333333333333333333333344444443   48889999999999999999999


Q ss_pred             hhheeccCChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          577 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       577 ~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      +|++.+..||+..|.+.++.++++.+.+...+
T Consensus       161 ~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999988999999998877776665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.22  E-value=6.2e-10  Score=117.76  Aligned_cols=146  Identities=17%  Similarity=0.092  Sum_probs=122.3

Q ss_pred             HHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      +....|.+.++.|.+..++|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.++.+  +.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Confidence            34445666678999999999999999999999999999999999999999999999888887777776  7777888999


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHH-HHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +.|++.+...+....++.+. +++++++..++.. ....+|..+||.++|.+.+.+|+ ..|+..+++.++
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            99999999999999998887 5667788888876 55678889999999999999887 466666555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.21  E-value=8.6e-10  Score=120.65  Aligned_cols=178  Identities=14%  Similarity=0.170  Sum_probs=118.4

Q ss_pred             hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHHH
Q 007159          421 LSKA-PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVR  498 (615)
Q Consensus       421 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~~  498 (615)
                      +++| .++.+++..++..++++.+..++|.|+++.+|++..+.+..............+++|++.|| +|+|+.+..+. 
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~-   95 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA-   95 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-
Confidence            3455 58888888888889999999999999999999999998887777665655666789999999 59986544322 


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc--hhhHHHHHHHHHHHHHHHHHHHH
Q 007159          499 KIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR--YAGVLLGLSNTAGVLAGVFGTAA  576 (615)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~gl~~~~~~lg~~igp~l  576 (615)
                            .....+..+..+.......+.+...+.+.+.+...+.......+..+++  +++.+.++.+...++|..+||.+
T Consensus        96 ------~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         96 ------IVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             ------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence                  1111111111111111122222223333333333333333444444443  35567888899999999999999


Q ss_pred             hhheeccCChhHHHHHHHHHHHHHHHHHH
Q 007159          577 TGYILQRGSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       577 ~G~l~~~~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      .|++.+..||+..|.+.++..+++.+.+.
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876666554443

>PRK10504 putative transporter; Provisional

Probab=99.21  E-value=1.1e-09  Score=119.27  Aligned_cols=176  Identities=18%  Similarity=0.292  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~  503 (615)
                      +.+|.+.+..++.......+..++|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+....+.  ....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~   86 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI--VLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHHH
Confidence            356777777777777777888899999877 8999999999999999999999999999999999997544221  1111


Q ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          504 IGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       504 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                      ++     ...... ..+...+.+..++.+.+.....+.......+..++++++++.|+.+....+|..++|.++|.+.+.
T Consensus        87 ~~-----~~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504         87 LG-----SLFCAL-SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             HH-----HHHHHH-hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            11     111111 122223333334444444444444444455667788999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          584 GSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       584 ~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .||+..|.+...+.+++.++.....
T Consensus       161 ~gw~~~f~~~~~~~~l~~~~~~~~~  185 (471)
T PRK10504        161 ASWHWIFLINIPVGIIGAIATLMLM  185 (471)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998877776666555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.20  E-value=9.5e-10  Score=119.98  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=121.9

Q ss_pred             hhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccC--hHHH
Q 007159          223 RVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG--LPFL  300 (615)
Q Consensus       223 ~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~--~~~l  300 (615)
                      ........|.+.++.|.+....++......+..+++.++.|+++||+|||++++.+.++.+++.++++.....+  ....
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33444566888888999887778888888888999999999999999999999999999888877765432111  1123


Q ss_pred             HHHHHHHHhhhcc-hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhh------hcCCCchHHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGV-AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL------IQKFGWPSVFYSFGSLG  373 (615)
Q Consensus       301 l~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l------~~~~gw~~~f~~~~~~~  373 (615)
                      +.+.++.+++.+. ..+....+++|.+|+++|++++|+......+|.++++.+.+.+      .+.++|++.|++.+++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            3344444554443 3367789999999999999999999999999988886665544      45788999998888776


Q ss_pred             HHHHHHHHhhhcC
Q 007159          374 SIWFALWLKKAYS  386 (615)
Q Consensus       374 ~~~~~~~~~~~~~  386 (615)
                      ++..++.+...++
T Consensus       447 ~~~~~~~~~~~~e  459 (479)
T PRK10077        447 VLAALFMWKFVPE  459 (479)
T ss_pred             HHHHHHHHhcccc
Confidence            6666555544443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.19  E-value=9.5e-10  Score=119.74  Aligned_cols=178  Identities=13%  Similarity=0.181  Sum_probs=125.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHHH
Q 007159          423 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKIM  501 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~~~~~  501 (615)
                      .+.++.++...+...+++++...+++.|+++.+|++..+.+++...+.....+..+++|+++|| +|+|+.+..+.  .+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~--~~   90 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA--IV   90 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH--HH
Confidence            3457777778888889999999999999999999999999998888888888888899999999 99997655432  11


Q ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc--hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007159          502 QSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR--YAGVLLGLSNTAGVLAGVFGTAATGY  579 (615)
Q Consensus       502 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~gl~~~~~~lg~~igp~l~G~  579 (615)
                      ..++.+.     ..+.......+.+.....+.+.+...+.......+.++++  +|+.+.++.+...++|..+||.++|+
T Consensus        91 ~~~g~~~-----~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~  165 (489)
T PRK10207         91 LAIGYFM-----TGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV  165 (489)
T ss_pred             HHHHHHH-----HHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            1111111     1111111111222333333333334444444555666665  45788999999999999999999999


Q ss_pred             eeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          580 ILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       580 l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      +.+..||+..|++.++..+++.+.+...
T Consensus       166 l~~~~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        166 IADKFGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999998766555555444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.19  E-value=6.9e-10  Score=115.93  Aligned_cols=175  Identities=16%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Q 007159          428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~  507 (615)
                      .+....++...+.......+|.|..+ .+.+..+.+++.+...++..++.++.|++.||+|+|+.+....  ....++..
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~   79 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGAD--LIRAVLVA   79 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHH--HHHHHHHH
Confidence            34555666667777777888888877 6999999999999999999999999999999999997554321  11111111


Q ss_pred             HHHHHHHHhccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          508 GPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       508 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ...  ..........+.. +..++.+.+.....+.......+..++++|+++.|+.+....+|..++|.+++++.+..||
T Consensus        80 ~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  157 (365)
T TIGR00900        80 VLP--FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI  157 (365)
T ss_pred             HHH--HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            111  1111111133333 3333333333333333344455667779999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 007159          587 DDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      +..|++.++..+++.++....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       158 KWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999988887776665554443

>PRK09952 shikimate transporter; Provisional

Probab=99.19  E-value=1e-09  Score=118.21  Aligned_cols=156  Identities=16%  Similarity=0.060  Sum_probs=111.6

Q ss_pred             HHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh--hccChHHHHH
Q 007159          226 MSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPFLLI  302 (615)
Q Consensus       226 ~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~--~~~~~~~ll~  302 (615)
                      .....|. +.+++|.+......+..+..+...++.++.|+++||+|||+++..+.++..++.+.+...  .....+.+++
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3334444 456788888766666666677778889999999999999999888876665544333221  1112334445


Q ss_pred             HHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHH-HHHHHHHHHhhhHhhhhcCC--CchHHHHHHHHHHHHHHHH
Q 007159          303 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFAL  379 (615)
Q Consensus       303 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~~~~~~  379 (615)
                      ..++.|++.+...+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+++.+..  +|...+...+++.++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            56677888888888889999999999999888888554 44589999999999998744  4788777666665555444


Q ss_pred             HH
Q 007159          380 WL  381 (615)
Q Consensus       380 ~~  381 (615)
                      .+
T Consensus       429 ~~  430 (438)
T PRK09952        429 AL  430 (438)
T ss_pred             HH
Confidence            43

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.18  E-value=1.4e-09  Score=117.26  Aligned_cols=176  Identities=15%  Similarity=0.134  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHH-HHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCc--hHHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNM-SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK--PVLGFGVIWW  282 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk--~~l~~~~~l~  282 (615)
                      .+.+...++++++..-+...+ ......-.+++|++..+...+.-+..+..+++++++|++.||+|.|  ++++++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            344445555555444333333 3344445669999999999999999999999999999999999999  8888888777


Q ss_pred             HHHHHHHHh--------hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHh
Q 007159          283 SVATVLTPV--------AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (615)
Q Consensus       283 ~i~~~l~~~--------~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~  354 (615)
                      .+..+...+        ..  +.+.+.+..++.|+..|...+...++.+++.|+++.+..+|++....-....+||++.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            554443333        22  45678888899999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCC-chHHHHHHHHHHHHHHHHHHhh
Q 007159          355 ILIQKFG-WPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       355 ~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      .+.+..| -|+.++.+.++.++.++++...
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            9999877 7888887777766666655444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.17  E-value=1.4e-09  Score=114.77  Aligned_cols=169  Identities=15%  Similarity=0.036  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 007159          430 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP  509 (615)
Q Consensus       430 ~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  509 (615)
                      ....+............+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+++|+.+..+.         +..
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~---------~~~   80 (385)
T TIGR00710        11 GCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL---------FIF   80 (385)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH---------HHH
Confidence            333334444455555566766555 8999999999999999999999999999999999986544221         111


Q ss_pred             HHHHHHhccccchHHHH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhH
Q 007159          510 AFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDD  588 (615)
Q Consensus       510 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~  588 (615)
                      .+........+..+..+ ..++.+.+.....+.......+..++++|+++.|+.+....+|..++|.+++++.+..+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  160 (385)
T TIGR00710        81 ALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHA  160 (385)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            11111111223333333 33344434333444444445566777999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 007159          589 VFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       589 ~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .|++.+++.++..++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       161 IFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            99988887777666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=99.17  E-value=4.6e-10  Score=118.78  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=111.3

Q ss_pred             HHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhc
Q 007159          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR  294 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~  294 (615)
                      ..++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+....+......++..... 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  336 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF-  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh-
Confidence            3333334444455567788889999999999999999999999999999999999999554444333333333322233 


Q ss_pred             cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhh
Q 007159          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (615)
Q Consensus       295 ~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l  356 (615)
                       +.+.+++..++.|++.+...+...+++.+.+|+++|++++|+......+|..+||.++|++
T Consensus       337 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       337 -SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence             5666778888999999999999999999999999999999999999999999999999875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.17  E-value=2.5e-09  Score=117.18  Aligned_cols=173  Identities=15%  Similarity=0.120  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 007159          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~  505 (615)
                      +..+++..++...-...+.+.+|.+..+ +|.+..+.+++.+.+.++..++.++.|+++||+|+|+.+..+.  ....++
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~--~~~~~~   84 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG--TLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHH
Confidence            3445555566555566777788888766 8999999999999999999999999999999999997554322  111111


Q ss_pred             HHHHHHHHHHhccccchHHHHH-HHHHHhhhhhhhhhhhhhhhhcc-CcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          506 FLGPAFFLTQLSHVRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDI-GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       506 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                      .       ......++.+.+++ -.+.+.+.....+.......+.. ++++|+++.|+......+|..+||.++|++.+.
T Consensus        85 ~-------~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         85 S-------LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             H-------HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1       11112234443333 34444444444443334444554 568999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          584 GSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       584 ~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      .||++.|++...++++..++..+..
T Consensus       158 ~gwr~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        158 FYWGSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998877777665554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=7.4e-10  Score=120.61  Aligned_cols=154  Identities=14%  Similarity=0.168  Sum_probs=135.7

Q ss_pred             HHHhHHHHH-hhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          226 MSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       226 ~~~~~~~i~-~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      +...+|.+. +.+|.++..+|++.+.+.+|.+++.++.+++.+|+++++++..+.++++++.+..++.+  +.+..++..
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHHHHH
Confidence            334567664 57899999999999999999999999999999999999999999999999988888887  777888888


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      ++.|++.........+.+....|++.||+.++++......+..+|.++.|.+.+.+|.+.++.+.++..++..++..
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998877765555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.16  E-value=1.6e-09  Score=116.66  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=104.4

Q ss_pred             HhhhhhHHHHhHHHHHhh-cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH-HH-Hhhhcc
Q 007159          219 CNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV-LT-PVAARI  295 (615)
Q Consensus       219 ~~~~~~~~~~~~~~i~~~-~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~-l~-~~~~~~  295 (615)
                      ............|.+.++ +|++..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+ .. ......
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333444455567776554 799999999999999999999999999999999999988776554433221 11 111222


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHH-HHHHHHHHHhhhHhhhhcCCCch
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWP  363 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~ig~~l~~~l~~~~gw~  363 (615)
                      ++..+.+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+++.++.|+.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            333344445566777777777777889999999999999998654 44456778999999999988864

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.16  E-value=2e-09  Score=113.07  Aligned_cols=160  Identities=13%  Similarity=0.076  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      ...+...+|.+.++ +|++..+.|++.+.+.++..++.+..|++.||+|||+....       .+........ ......
T Consensus         7 ~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~-------~~~~~~~~~~-~~~~~~   77 (368)
T TIGR00903         7 WVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFG-------SLATFAAAAG-RLLDPF   77 (368)
T ss_pred             HHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH-------HHHHHHHHHH-HHHHhc
Confidence            34445566666655 89999999999999999999999999999999997753221       1111111111 111112


Q ss_pred             cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          520 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      +...+.+.-++.+.+. +...+......+..++++|+++.++.+....+|..+++++++++.+..||+..|.+.+++.++
T Consensus        78 ~~~~l~~~R~l~G~g~-~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~  156 (368)
T TIGR00903        78 NYEWLLACQLLAALGQ-PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA  156 (368)
T ss_pred             cHHHHHHHHHHHHhHh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            2233333333443333 334444444567788899999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHhc
Q 007159          600 GTLVWNLFAT  609 (615)
Q Consensus       600 ~~l~~~~~~~  609 (615)
                      ..+++.+..+
T Consensus       157 ~~~~~~~~lp  166 (368)
T TIGR00903       157 GIILVLAALP  166 (368)
T ss_pred             HHHHHHHHcC
Confidence            6665554433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.15  E-value=1.1e-09  Score=116.42  Aligned_cols=141  Identities=9%  Similarity=0.073  Sum_probs=117.3

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhH
Q 007159          238 NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPA  317 (615)
Q Consensus       238 g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~  317 (615)
                      +.+....|++.++..+...++.++.|++.||+|+|+.+.++.++.++..++...++  +.+.+++.+++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999998888877766666  6777788899999987776666


Q ss_pred             HHHHhhhcccccchhhHHHH-HHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHH
Q 007159          318 MNNMLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (615)
Q Consensus       318 ~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~  380 (615)
                      ...+..+..+++.++...+. .+....+|.++++.++|++.+.+||+..|++.+++.++..++.
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            66777777777777776665 5678899999999999999999999999998888776655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=3.3e-09  Score=113.37  Aligned_cols=158  Identities=13%  Similarity=0.039  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      ...+....| .+++.+|++..+.|++.+...++..++.++.|++.||+|+|+.+..+         +++..+........
T Consensus        24 ~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~---------~~~~~~~~~~~~~~   93 (412)
T TIGR02332        24 RINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI---------MVLWGIASTATMFA   93 (412)
T ss_pred             hhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH---------HHHHHHHHHHHHHh
Confidence            334444445 66777999999999999999999999999999999999999754322         11111111111122


Q ss_pred             cch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec------cCChhHHHHH
Q 007159          520 RTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ------RGSWDDVFKV  592 (615)
Q Consensus       520 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~------~~g~~~~f~~  592 (615)
                      ++. .+.+.-++.+.+.....+.......+..++++|+++.|+.+....+|..+++.+++++.+      ..||+.+|.+
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~  173 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLL  173 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHH
Confidence            333 333444444444444444444445666778899999999999999999999999998864      3699999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007159          593 AVVLYIIGTLVWNLF  607 (615)
Q Consensus       593 ~~~~~l~~~l~~~~~  607 (615)
                      .++..++..++..++
T Consensus       174 ~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       174 EGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            887776655544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.14  E-value=2.6e-09  Score=112.99  Aligned_cols=173  Identities=14%  Similarity=0.084  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~  503 (615)
                      +.++.+.+..++...........+|.+.++ +|++..+.++..+...++..++.++.|++.||+++|+.+..+.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~------   75 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLV------   75 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH------
Confidence            356667777777777777777888887655 8999999999999999999999999999999999986544221      


Q ss_pred             HHHHHHHHHHHHhccccchHHHH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          504 IGFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       504 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                         ...++........+.++.++ ..++.+.+.....+.......+..++++++++.++......++..++|++++++.+
T Consensus        76 ---~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         76 ---ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             ---HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence               11111111222233344333 33333433333333333334455667789999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHH
Q 007159          583 RGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       583 ~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      ..+|+.+|.+.+++.++..+....
T Consensus       153 ~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        153 EFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988877666554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=2.4e-09  Score=116.90  Aligned_cols=171  Identities=16%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Q 007159          428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~  507 (615)
                      .+++..++..+........+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.         +
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~---------~   75 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST---------F   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH---------H
Confidence            34445555555556666777877766 8999999999999999999999999999999999996544221         1


Q ss_pred             HHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          508 GPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       508 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      +..+........+... +.+..++.+.+.....+.......+..++++|+++.++......+|..++|.++|++.+..+|
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w  155 (485)
T TIGR00711        76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW  155 (485)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence            1111111122223333 333444444444444444455566677889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 007159          587 DDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      +..|++.+.+.++..++..+..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~  177 (485)
T TIGR00711       156 RWIFLINVPIGIIVVVVAFFIL  177 (485)
T ss_pred             eehhhhhhHHHHHHHHHHHHHc
Confidence            9999988877776665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11043 putative transporter; Provisional

Probab=99.13  E-value=4.6e-09  Score=111.80  Aligned_cols=163  Identities=12%  Similarity=0.051  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 007159          438 WGTFILLTWMPTY--YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ  515 (615)
Q Consensus       438 ~~~~~~~~~~p~~--~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  515 (615)
                      ........+.|.+  +.+.+|.+..+.++..++..++..++.++.|++.||+++|+.+..+.         ....+....
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~---------~~~~~~~~~   87 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL---------SLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH---------HHHHHHHHH
Confidence            3334444444544  44568999999999999999999999999999999999997544221         111111111


Q ss_pred             hccccchHH-HHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHH
Q 007159          516 LSHVRTPAM-AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV  594 (615)
Q Consensus       516 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~  594 (615)
                      ....+..+. .+..++.+.+.............+..++++++...+..+....++..++|.++|++.+..||+..|++.+
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043         88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             HHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            111223333 3333333333222232323334556777888889999988899999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhc
Q 007159          595 VLYIIGTLVWNLFAT  609 (615)
Q Consensus       595 ~~~l~~~l~~~~~~~  609 (615)
                      ++.++..++.....+
T Consensus       168 ~~~~~~~~~~~~~~~  182 (401)
T PRK11043        168 AITLLLILPTLRLKP  182 (401)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            877776665554433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.13  E-value=4.2e-09  Score=107.86  Aligned_cols=158  Identities=9%  Similarity=0.092  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHh---hcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSK---EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~  285 (615)
                      +.+..+..++.......+....+.+.+   .+|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++.++..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333445555544445555555566554   36999999999999999999999999999999999999988888877777


Q ss_pred             HHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      .++....+  +.. ....-++.|++.+..+|...+...+..++ +.+++.++. ....+|.+++|++.|.+.+..|.+..
T Consensus       222 ~~l~~~~~--~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       222 SIGAALTH--GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHHHHHcC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHH
Confidence            66555443  332 33455678999999999999999998854 456667775 56779999999999999999998888


Q ss_pred             HHHHHH
Q 007159          366 FYSFGS  371 (615)
Q Consensus       366 f~~~~~  371 (615)
                      |++..+
T Consensus       297 ~~v~~~  302 (310)
T TIGR01272       297 FALPVP  302 (310)
T ss_pred             HHHHHH
Confidence            874433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.12  E-value=1.7e-09  Score=112.62  Aligned_cols=181  Identities=12%  Similarity=0.078  Sum_probs=134.0

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 007159          419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVR  498 (615)
Q Consensus       419 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~  498 (615)
                      .++.++.+..+++..++..++...+++++--++++ ++-.+...|...+..-.+.++.-++.+++.+|+|..+++.    
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~----  440 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY----  440 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee----
Confidence            45566677777777777888888888888777777 5766777787777778888899999999999999887654    


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhh-hhhccCcchhhHHHHHHHHHH-HHHHHHHHHH
Q 007159          499 KIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAG-VLAGVFGTAA  576 (615)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~gl~~~~~-~lg~~igp~l  576 (615)
                           +++.+...-++..+...++|..+-.=++-+...+..+....+ +....||+.++++.|+..... .+|-.+|.++
T Consensus       441 -----lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI  515 (618)
T KOG3762|consen  441 -----LGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI  515 (618)
T ss_pred             -----ehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence                 233333333444444556666655555555554444444444 455578899999999987664 8899999999


Q ss_pred             hhheeccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          577 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       577 ~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      +|.+.+++|-+..|..+++.+++.++++..+.+
T Consensus       516 GG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  516 GGFVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999888877766544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=1.7e-09  Score=114.82  Aligned_cols=151  Identities=17%  Similarity=0.105  Sum_probs=114.1

Q ss_pred             HhHHHHHhhcCCCchhhHHHHHHHHH-HHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh-hh---ccChHHHHH
Q 007159          228 IAILPMSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV-AA---RIGLPFLLI  302 (615)
Q Consensus       228 ~~~~~i~~~~g~s~~~~g~i~s~~~l-~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~-~~---~~~~~~ll~  302 (615)
                      ...+.+.+|.|+++.++|++..+... ...++.++.|++.||+|+|+.+.++.++.++..+.... ..   ..+...+..
T Consensus       229 ~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       229 GLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            34566667789999999999888764 66677899999999999999988877665333322221 11   112333444


Q ss_pred             HHHHHHhhhcchhhHHHHHhhhcccc-cchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHH
Q 007159          303 MRAFMGIGEGVAMPAMNNMLSKWIPV-SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (615)
Q Consensus       303 ~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  378 (615)
                      ..++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|++.+++.++..+
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            55566677777778888887777766 78899999999999999999999999999999999999877766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.12  E-value=8.9e-10  Score=115.62  Aligned_cols=146  Identities=16%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             hhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCC-chHHH-HHH-HHHHHHHHHHHhhhccC
Q 007159          221 MDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLG-FGV-IWWSVATVLTPVAARIG  296 (615)
Q Consensus       221 ~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Gr-k~~l~-~~~-~l~~i~~~l~~~~~~~~  296 (615)
                      .....+....|.+ .+.+|.+..+.+++.+.+.++..++.++.|++.||+.+ |+... ... .+..++..........+
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (379)
T TIGR00881       230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAAN  309 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchh
Confidence            3334444455554 56789999999999999999999999999999998643 33222 211 11222222222211123


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f  366 (615)
                      ...+++..++.|+......+....++.+.+|+++|+++.|+.+....+|..++|.+.|.+.+.+||++.|
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            4455666677777666666677788999999999999999999999999999999999999999998764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.11  E-value=6.7e-09  Score=110.19  Aligned_cols=170  Identities=15%  Similarity=0.071  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Q 007159          428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~  507 (615)
                      ...+..+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|+|+.+..+.         +
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~---------~   76 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA---------A   76 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH---------H
Confidence            33344444455555566677877766 7999999999999999999999999999999999986544221         1


Q ss_pred             HHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          508 GPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       508 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ...+........+... +.+..++.+.+.............+..++++|+++.++.+....++..++|.+++.+.+..+|
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~  156 (392)
T PRK10473         77 LFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPW  156 (392)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence            1111111111222333 333333333333333334444556667789999999999999999999999999998888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 007159          587 DDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      +..|++.+++.++..++....
T Consensus       157 ~~~~~~~~~~~~i~~~~~~~~  177 (392)
T PRK10473        157 QSLFYTMAAMGILVLLLSLFI  177 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999888777666554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=6.6e-09  Score=110.38  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=115.1

Q ss_pred             HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHH-HHHHHHHHHhhhccChHHHHHHHHHHH
Q 007159          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW-WSVATVLTPVAARIGLPFLLIMRAFMG  308 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l-~~i~~~l~~~~~~~~~~~ll~~r~l~G  308 (615)
                      .|.+.+++|++..+.+++...+.++..++.++.+++.||.++ +.++.+.++ .....++....+  +.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence            466778899999999999999999999999999999999654 444444344 333334433444  4566777888999


Q ss_pred             hhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHH
Q 007159          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (615)
Q Consensus       309 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~  380 (615)
                      ++.+...+...+++.+..| +++++..++......+|..+|+.++|++.+..|++..++..+++..+..++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            9999999999989998885 5677888888888899999999999999999999988887766655544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.11  E-value=4.2e-09  Score=110.45  Aligned_cols=166  Identities=14%  Similarity=0.119  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 007159          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~  505 (615)
                      +|..++..++..........+.|.++++.+|++..+.+++.+...++..++.++.|++.||+|+|+.+..+.  ....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i~   80 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAIP   80 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHH
Confidence            455566666666677777888888788889999999999999999999999999999999999997544322  111111


Q ss_pred             HHHHHHHHHHhcccc-chHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec-
Q 007159          506 FLGPAFFLTQLSHVR-TPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-  582 (615)
Q Consensus       506 ~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~-  582 (615)
                      .       ......+ ..+.+ +..++.+.+ ............+..++++|+++.++......+|..+++.+.+.+.+ 
T Consensus        81 ~-------~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886        81 C-------LWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             H-------HHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            1       1111112 33333 333333333 33333444445666778999999999998888888888877776654 


Q ss_pred             ---------cCChhHHH-HHHHHHHHHHH
Q 007159          583 ---------RGSWDDVF-KVAVVLYIIGT  601 (615)
Q Consensus       583 ---------~~g~~~~f-~~~~~~~l~~~  601 (615)
                               ..+|+..| ...+++.++..
T Consensus       153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  181 (366)
T TIGR00886       153 LIFGAGLPAHLAWGWAFVIVPAGILLLPA  181 (366)
T ss_pred             HHhcccccccccccchhHHHHHHHHHHHH
Confidence                     24788888 43344443333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.10  E-value=1.9e-09  Score=116.23  Aligned_cols=161  Identities=14%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             HHHHhHHHHHh-hcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH---HHHHHHHhhhccChHHH
Q 007159          225 NMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS---VATVLTPVAARIGLPFL  300 (615)
Q Consensus       225 ~~~~~~~~i~~-~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~---i~~~l~~~~~~~~~~~l  300 (615)
                      ......|.+.+ ..|.++.+.++..+++.++..++.++.|++.||+++++....+..+..   ++.++....+..+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            34456666655 479999999999999999999999999999999965432222322221   12222222221133333


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHH-HHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLG-SVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL  379 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG-~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~  379 (615)
                      .+..++.|++.............+.+|+++|++++|+.+....+| .++||.+.|.+.++.||.+.|++..++.++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            344455555433332333456778999999999999998887776 5789999999999999999998877766666555


Q ss_pred             HHhhhc
Q 007159          380 WLKKAY  385 (615)
Q Consensus       380 ~~~~~~  385 (615)
                      .+...+
T Consensus       429 ~~~~~~  434 (438)
T TIGR00712       429 LIVVMI  434 (438)
T ss_pred             HHHHHh
Confidence            555444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=9.3e-09  Score=109.70  Aligned_cols=147  Identities=13%  Similarity=0.039  Sum_probs=115.0

Q ss_pred             hHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh---ccChHHHHHHH
Q 007159          229 AILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA---RIGLPFLLIMR  304 (615)
Q Consensus       229 ~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~---~~~~~~ll~~r  304 (615)
                      ..|.+ .+++|+++.+.++......++..++.++.|++.||+++|+.+.++.++..++.++..+..   ..+++++++..
T Consensus       237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK15402        237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL  316 (406)
T ss_pred             HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence            34554 567899999999988888889999999999999999999999998888877776665432   22455677788


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHH
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  376 (615)
                      ++.|++.+...+......... +++++++..+..+....+|..+|+.+++.+.+..++....+..++..++.
T Consensus       317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            889999888777766665444 45899999999999999999999999999988888766555444443333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.06  E-value=5.6e-06  Score=88.52  Aligned_cols=276  Identities=8%  Similarity=0.030  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCC-----CchhhHHHHHHHHHHHHHH-HHhhHHhhhhcCCchHHHHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNW-----NSTTVGLIQSSFFWGYLLT-QIVGGIWADKFGGKPVLGFGVI  280 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~-----s~~~~g~i~s~~~l~~~l~-~~~~G~l~Dr~Grk~~l~~~~~  280 (615)
                      +.++...+.+|+..+..+.    +-++.+.+.+     +...+.++.+...+...+. .++.+++++|++|++++.+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3445555555554444333    3345555544     3467889998888877776 8899999999999999887777


Q ss_pred             HHHHHHHHHHhhhc----c-------------------------ChHHHHHHHHHHHhhhcchhh-HHHHHhhhcccccc
Q 007159          281 WWSVATVLTPVAAR----I-------------------------GLPFLLIMRAFMGIGEGVAMP-AMNNMLSKWIPVSE  330 (615)
Q Consensus       281 l~~i~~~l~~~~~~----~-------------------------~~~~ll~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~  330 (615)
                      .+....+++++.-.    .                         +.|...+..+...+....... ....++.|.++.+|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            66666665554410    0                         112223334444555555555 78899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhHhhhhc-------CC-Cch----HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHH
Q 007159          331 RSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KF-GWP----SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE  398 (615)
Q Consensus       331 r~~~~~~~~~~~~lG~~ig~~l~~~l~~-------~~-gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (615)
                      -.+.+++...+.++|.++|+.+..++.+       .. .|.    +.+.+.+++..+...+.... .+....++.....+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWV-NRNVLTDPRSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCccccchh
Confidence            9999999999999999999999888763       11 232    12222222222222222222 22111111110001


Q ss_pred             HhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHH
Q 007159          399 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE----SGLFCVLPWLTMA  474 (615)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~----~g~~~~~~~i~~~  474 (615)
                      .+   +.+.++...-...++.++++|-++.+.+..++++.....+....-....+.+ -++.+    .|.+....++..+
T Consensus       242 ~~---~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl  317 (472)
T TIGR00769       242 LK---EKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSV  317 (472)
T ss_pred             hc---cccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            00   0000011111236677889998888888888877776666665555555544 23333    2334444455555


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 007159          475 VFANMGGWIADTLVSKG  491 (615)
Q Consensus       475 ig~~l~g~l~dr~g~~~  491 (615)
                      +..++.+++.+|+|-+.
T Consensus       318 ~~~l~~~~l~~~~Gw~~  334 (472)
T TIGR00769       318 TMMLLSGNVIRKYGWLT  334 (472)
T ss_pred             HHHHHHHHHHHHhhHHH
Confidence            56666789999988764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.06  E-value=1.3e-08  Score=110.93  Aligned_cols=158  Identities=15%  Similarity=0.059  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      .+....++|.+ .+.+|++..+.+++.+...++..++.++.|++.||+|+|+....+         .+..++........
T Consensus        52 ~~~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~---------~~~~~~~~~~~~~~  121 (476)
T PLN00028         52 TFAAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL---------LMLTAPAVFCMSLV  121 (476)
T ss_pred             HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH---------HHHHHHHHHHHHHh
Confidence            33444445555 455899999999998888899999999999999999998644321         11111111111122


Q ss_pred             cchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec---------cCChhHH
Q 007159          520 RTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ---------RGSWDDV  589 (615)
Q Consensus       520 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~---------~~g~~~~  589 (615)
                      .....+ +..++.+.+... ..+......+..++++||++.|+.+....+|..+++.+.+.+..         ..||+.+
T Consensus       122 ~s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~  200 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA  200 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence            233333 333333333322 22333345566778999999999988888888887766655432         2489999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 007159          590 FKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       590 f~~~~~~~l~~~l~~~~~~  608 (615)
                      |++.+++.++..++..++.
T Consensus       201 f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        201 FFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999888877666655543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=4.3e-09  Score=112.19  Aligned_cols=149  Identities=14%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             HHHHHhhcCCCchhhHHHHHHH-HHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH---HhhhccChHHHHHHH-
Q 007159          230 ILPMSKEFNWNSTTVGLIQSSF-FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMR-  304 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s~~-~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~---~~~~~~~~~~ll~~r-  304 (615)
                      .+.+.+++|+++.+++++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+..   ++.+ .+.+.+++.- 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            3456777999999999998665 45688999999999999999998877776665554332   2332 1444444444 


Q ss_pred             ---HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 007159          305 ---AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       305 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                         ++.|++.+...+..+.++.+.+|.++    .++.....++|.++++.++|.+.+.+||+..|.+.++++++..++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               34556666667777777777776444    45555666778877777899999999999999988877766655544


Q ss_pred             hh
Q 007159          382 KK  383 (615)
Q Consensus       382 ~~  383 (615)
                      +.
T Consensus       388 ~~  389 (402)
T PRK11902        388 LM  389 (402)
T ss_pred             HH
Confidence            33

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.05  E-value=1e-08  Score=108.39  Aligned_cols=166  Identities=17%  Similarity=0.257  Sum_probs=130.1

Q ss_pred             HHHhhhhhHHHHhHHHHHhhcC-CCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcc
Q 007159          217 LLCNMDRVNMSIAILPMSKEFN-WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~~i~~~~g-~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~  295 (615)
                      ++.......+..+.+.+.++.| .+....|.+.++..++-++.-...+++..|+|.|++++++.+.+++=..+++...+ 
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-  295 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            4444555556667777788888 77788898889989999999999999999999999999999999998888887732 


Q ss_pred             ChHHHHH----HHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHH-HHHHHHHHHhhhHhhhhcCCCchH------
Q 007159          296 GLPFLLI----MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPS------  364 (615)
Q Consensus       296 ~~~~ll~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~ig~~l~~~l~~~~gw~~------  364 (615)
                      +.+...+    ...+.|+..+..+.+...++.+..|++.|+++.+++.. ..++|.++|..++|++.+++|-+.      
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence            3333332    34569999999999999999999999999999999887 468999999999999999877554      


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 007159          365 VFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       365 ~f~~~~~~~~~~~~~~~~~  383 (615)
                      .+.+.+++.++..+++...
T Consensus       376 ~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3344444444444444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.05  E-value=6.8e-09  Score=110.26  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~  503 (615)
                      |.++.+++..++..++........+.+.. .++.+....+++.+.+.+...+..++.|++.||+++|+++..+..  ...
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~--~~~   79 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLK-ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG--IKL   79 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH--HHH
Confidence            35666777777777666555555665554 478899999999999999999999999999999999987664431  111


Q ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          504 IGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       504 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                      ++.+....     .  ..+  .+..++.+.+.....+.....+.+.+++++|+++.|+.+....++..+||.++|++.+.
T Consensus        80 ~~~~~~~~-----~--~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         80 LGCLLMLF-----G--IHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHH-----H--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111     1  111  22233444444445555555567778889999999999999999999999999999986


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHH
Q 007159          584 GSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       584 ~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      . +...+.+.+++.+++.+....+
T Consensus       151 ~-~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195        151 H-AEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhcC
Confidence            4 6666666655555444443333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=4.5e-09  Score=113.16  Aligned_cols=122  Identities=14%  Similarity=0.197  Sum_probs=103.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHH
Q 007159          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN  319 (615)
Q Consensus       240 s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~  319 (615)
                      +..+.+++.++..++.+++.++++++.||+|+|+++..+.++.+++.++..+.++ +.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-NLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888889999999999999999999999999999888888776665432 456667778888999999999999


Q ss_pred             HHhhhccc-------ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          320 NMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       320 ~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      ++++|..+       ++++|..+|+.+....+|..+|+.+.|.+.+..||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998865       45579999999999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.04  E-value=6.6e-09  Score=108.18  Aligned_cols=160  Identities=8%  Similarity=0.053  Sum_probs=132.5

Q ss_pred             HHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      +..+...+.++-+.+...+|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.+++++++  +.+.+.+.+.
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~kl  320 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Confidence            33334444444455667799999999999999999999999999999999999999999999999999  8889999999


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHH-HHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  384 (615)
                      +.|+-.+....+...++.+.+|++-.++...+. +.+.++|.++.+.++|.+.++.|.+.+|++++.+.++..++..+..
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            999999999999999999999888777777774 6788999999999999999999999999999888777666666555


Q ss_pred             cCC
Q 007159          385 YSS  387 (615)
Q Consensus       385 ~~~  387 (615)
                      +++
T Consensus       401 ~~~  403 (412)
T PF01306_consen  401 KKD  403 (412)
T ss_dssp             --S
T ss_pred             cCC
Confidence            443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.03  E-value=4e-09  Score=108.15  Aligned_cols=380  Identities=16%  Similarity=0.106  Sum_probs=204.5

Q ss_pred             HHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh----cCCchHH-HHHHHHHHHHHHHHHh
Q 007159          217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGKPVL-GFGVIWWSVATVLTPV  291 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr----~Grk~~l-~~~~~l~~i~~~l~~~  291 (615)
                      +..-+....-..+.+++.+++|++....+.+.-...+...+.+|+.|..+||    |||||.. ..+.++..++.++..+
T Consensus        42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~  121 (498)
T KOG0637|consen   42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY  121 (498)
T ss_pred             HHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence            3334555555667888999999999999999999999999999999999996    7877654 4556666677777766


Q ss_pred             hhccC---------------hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhh-HHHHHHHHHHHHHHHHhhhHhh
Q 007159          292 AARIG---------------LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSR-SLAFVYSGMYLGSVTGLAVSPI  355 (615)
Q Consensus       292 ~~~~~---------------~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~ig~~l~~~  355 (615)
                      +....               ...+++.--+.=++.-....++-+++.|...++++.+ +++++.....+|..+|..++++
T Consensus       122 aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  122 AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            65211               1223333344445666788899999999998777776 9999999999999999888874


Q ss_pred             hhcCCCchHH--HHHHHHHHHHHH---------HHHHhhhc----CCCCCCccccHHHHhhhhcCCccccccccccHHH-
Q 007159          356 LIQKFGWPSV--FYSFGSLGSIWF---------ALWLKKAY----SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKL-  419 (615)
Q Consensus       356 l~~~~gw~~~--f~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (615)
                      .    +|+-.  |.....+.+...         +.+....+    ..+++++...+....   +.+..+.+.....+.. 
T Consensus       202 ~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~---~~~~~~~~~~~e~fG~~  274 (498)
T KOG0637|consen  202 L----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTA---RSKSSKLPFLLEIFGAL  274 (498)
T ss_pred             c----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccc---cccccCcchHHHHhchH
Confidence            3    33221  111111100000         00000000    001110000000000   0000000000000001 


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChh----------------HHHHHHHHHHHHHHHHHHHHHH
Q 007159          420 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLT----------------ESGLFCVLPWLTMAVFANMGGW  482 (615)
Q Consensus       420 l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~-~~g~s~~----------------~~g~~~~~~~i~~~ig~~l~g~  482 (615)
                      ....++.+.+++...+...+.+.+..|...++-+ +++-++.                ...+-+.+..+...+.+....+
T Consensus       275 ~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~  354 (498)
T KOG0637|consen  275 KVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEK  354 (498)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence            1235678888888888888887777777666533 3333321                1233445667777788888999


Q ss_pred             HHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh------------ccccchHHHHHHHHHHhhhhhhhhhhhhhhhh-c
Q 007159          483 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL------------SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ-D  549 (615)
Q Consensus       483 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  549 (615)
                      +.+|+|.|+.+..+...+....++.++..-....            .....++.++........-..+.+...+.... .
T Consensus       355 l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~  434 (498)
T KOG0637|consen  355 LSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIE  434 (498)
T ss_pred             HHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccccccccccccccc
Confidence            9999997666554432222222222211100000            00000111111111111111111111111111 0


Q ss_pred             cC--cchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh--hHHHHHHHHHHHHHHHH
Q 007159          550 IG--PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW--DDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       550 ~~--~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~--~~~f~~~~~~~l~~~l~  603 (615)
                      ..  ...+|...|+.+....+.+++.....|.+.+..|-  ..++...++..+++.++
T Consensus       435 ~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~  492 (498)
T KOG0637|consen  435 IGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIV  492 (498)
T ss_pred             ccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHH
Confidence            11  13347888889999999999999988988887432  33333334434444333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.03  E-value=7.7e-08  Score=93.92  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      ||..+.......... ...+.++.+-|.+.+.+|+|.+|...+.+...+|..++ ++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~~-Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCS-GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhc-CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence            466655555555444 45666788899999999999999999999999998874 8889999999999999999999999


Q ss_pred             HHHHHHhhhc-----cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC
Q 007159          285 ATVLTPVAAR-----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (615)
Q Consensus       285 ~~~l~~~~~~-----~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~  359 (615)
                      +..+..++-+     .++|.+.+..++.|.+.+....+......+.|| ++||.+.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            9887665432     246777777778888877777787777788995 6899999999999999998877777666654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.03  E-value=1.5e-08  Score=109.04  Aligned_cols=156  Identities=11%  Similarity=0.040  Sum_probs=99.0

Q ss_pred             hhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHH--hhhccChHH
Q 007159          223 RVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP--VAARIGLPF  299 (615)
Q Consensus       223 ~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~--~~~~~~~~~  299 (615)
                      ...+...+|.+ .+++|.+..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+...  .....+...
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            33344556665 456899998999999988888899999999999999999988776654433332111  111112222


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHH-HHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~  377 (615)
                      .+..-++.+++.+...+....+++|++|++.|+.++|+.+....+ +....|.+.+.+ +..| |...++..++..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence            222222233333344456678889999999999999998876553 344577777755 4445 5555554444444443


Q ss_pred             HH
Q 007159          378 AL  379 (615)
Q Consensus       378 ~~  379 (615)
                      +.
T Consensus       418 ~~  419 (432)
T PRK10406        418 LV  419 (432)
T ss_pred             HH
Confidence            33

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.02  E-value=2.9e-09  Score=113.03  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHH
Q 007159          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (615)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i  284 (615)
                      |+...+.+.+.......+......+...+.++.|++..+.-++.....+...+..+++..+.||+|||++++.+..+..+
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV  347 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            34444444444445555556666777789999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhhc----c-Ch--HHHHHHHHHHHhhhcch-hhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhh
Q 007159          285 ATVLTPVAAR----I-GL--PFLLIMRAFMGIGEGVA-MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (615)
Q Consensus       285 ~~~l~~~~~~----~-~~--~~ll~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l  356 (615)
                      ..+++.....    . ++  +..+++.++..++.+.. -|...-+.+|++|++.|+.++++......++..+-......+
T Consensus       348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l  427 (485)
T KOG0569|consen  348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL  427 (485)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776554321    1 11  11234444444433332 478888999999999999999999999999998888888888


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 007159          357 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP  392 (615)
Q Consensus       357 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (615)
                      .+.+|- +.|+++.+.+++..+..++..|+.+.+..
T Consensus       428 ~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  428 QNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             HHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence            887776 77888888888888888877777655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.01  E-value=2.3e-08  Score=106.19  Aligned_cols=166  Identities=8%  Similarity=-0.019  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Q 007159          431 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA  510 (615)
Q Consensus       431 l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  510 (615)
                      ...++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|+|+.+..+.  .     .....
T Consensus        15 ~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~--~-----~~~~~   86 (394)
T PRK11652         15 LLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM--S-----IFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--H-----HHHHH
Confidence            33333334444444556766655 8999999999999999999999999999999999997544321  1     11111


Q ss_pred             HHHHHhccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHH
Q 007159          511 FFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDV  589 (615)
Q Consensus       511 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~  589 (615)
                      ....  ...+..+.+ +..++.+.+.....+.......+..++++++.+.++.+....++..++|.++|.+.+..||+.+
T Consensus        87 ~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~  164 (394)
T PRK11652         87 TLVA--LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC  164 (394)
T ss_pred             HHHH--HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence            1111  112233333 3333333332222222222333445668899999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007159          590 FKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       590 f~~~~~~~l~~~l~~~~  606 (615)
                      |++.+++.++..++..+
T Consensus       165 f~~~~~~~~~~~~~~~~  181 (394)
T PRK11652        165 YLFLLLLGAGVTFSMAR  181 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99887776655444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.01  E-value=1e-08  Score=108.14  Aligned_cols=158  Identities=14%  Similarity=0.080  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV  519 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  519 (615)
                      .......+|.+.++ +|++..+.+++.+...++..++.++.|++.||+++|+.+..+.         +..++........
T Consensus         7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~---------~~~~i~~~~~~~~   76 (377)
T PRK11102          7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGT---------LVFALAAVACALA   76 (377)
T ss_pred             HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHH---------HHHHHHHHHHHHH
Confidence            34455677888776 7999999999999999999999999999999999886543221         1111111111112


Q ss_pred             cchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHH
Q 007159          520 RTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI  598 (615)
Q Consensus       520 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l  598 (615)
                      +..+ +.+..++.+.+.....+.......+..++++|+++.++.+....+|..++|.+++.+.+..+|+..|++.+++.+
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  156 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAI  156 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            2333 333333334333333334444455566778999999999999999999999999999998999999998888777


Q ss_pred             HHHHHHHHH
Q 007159          599 IGTLVWNLF  607 (615)
Q Consensus       599 ~~~l~~~~~  607 (615)
                      +..++..+.
T Consensus       157 ~~~~~~~~~  165 (377)
T PRK11102        157 LAAALVFFF  165 (377)
T ss_pred             HHHHHHHHh
Confidence            766554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1e-08  Score=111.16  Aligned_cols=174  Identities=17%  Similarity=0.184  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcC--CchHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG--GKPVLGFGVIWWSVAT  286 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~G--rk~~l~~~~~l~~i~~  286 (615)
                      ++.+.+...+..++..+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.+++.
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            34444445555677777778899999999999999999999999999999999999999987  4556677777778888


Q ss_pred             HHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHH
Q 007159          287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSV  365 (615)
Q Consensus       287 ~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~  365 (615)
                      +.+++++  +++.++...++.|+..|........++.|+.+.++...+.|+.....+++.++||+++|++.+..| |...
T Consensus       380 ~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  380 LFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA  457 (509)
T ss_pred             HHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence            8888888  788899999999999999988888899999999999999999999999999999999999999887 9999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 007159          366 FYSFGSLGSIWFALWLKKA  384 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~  384 (615)
                      |+..++..++...+++...
T Consensus       458 f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  458 FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhhcChHHHHHHHHHHHhH
Confidence            9988888777665555444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.98  E-value=1.2e-08  Score=112.19  Aligned_cols=155  Identities=14%  Similarity=0.010  Sum_probs=103.4

Q ss_pred             HHHhHHHHHhhcCCCchhhHH------------HHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh
Q 007159          226 MSIAILPMSKEFNWNSTTVGL------------IQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (615)
Q Consensus       226 ~~~~~~~i~~~~g~s~~~~g~------------i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~  293 (615)
                      .....|.+.++.|.+....+.            ...+..++.+++.++.++++||+|||++++++.++.+++.++..+..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            334467777888876543221            23344456666888899999999999999888877777665555432


Q ss_pred             c--cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC----------CC
Q 007159          294 R--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK----------FG  361 (615)
Q Consensus       294 ~--~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~----------~g  361 (615)
                      .  .....+....++..++.....+....+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+.          .+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            1  01111221112222222233456677789999999999999999999999999999999988873          34


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 007159          362 WPSVFYSFGSLGSIWFALW  380 (615)
Q Consensus       362 w~~~f~~~~~~~~~~~~~~  380 (615)
                      +...|++.+++.++..+..
T Consensus       467 ~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             chHHHHHHHHHHHHHHHHh
Confidence            4567777776666554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.98  E-value=1.8e-07  Score=93.57  Aligned_cols=362  Identities=13%  Similarity=0.009  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhh-----hcCCchHHHH-HHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-----KFGGKPVLGF-GVI  280 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D-----r~Grk~~l~~-~~~  280 (615)
                      ..+.++...+.+.+.-..... .+|.+.+.-|.|.++.+....+ +.. ...-++|.++.|     |+||||..++ +..
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~a-y~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFA-YWP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhh-hhH-HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            344555566777777777777 8999999888888877654332 222 234578899999     9999876443 333


Q ss_pred             HHHHHHHHHHhhh---------ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhh
Q 007159          281 WWSVATVLTPVAA---------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (615)
Q Consensus       281 l~~i~~~l~~~~~---------~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~  351 (615)
                      +.+..+.+.+...         .++...+....++.-+..+.-..+...+.-.+..+++.|-+......+..+|.++|..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            3333333222211         1122223334466677778888888888888888899888888888888888887766


Q ss_pred             hHhhhhc-------CCCch---------HHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccc
Q 007159          352 VSPILIQ-------KFGWP---------SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVI  415 (615)
Q Consensus       352 l~~~l~~-------~~gw~---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (615)
                      +.-.+..       ..+|.         .-+++.+.+..+...+..+..++++.+..++......+           ..+
T Consensus       188 ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~-----------~yk  256 (510)
T KOG3574|consen  188 VFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHE-----------SYK  256 (510)
T ss_pred             eeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHH-----------HHH
Confidence            5433322       11222         11223344444443333333333322211000000000           011


Q ss_pred             cHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Q 007159          416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (615)
Q Consensus       416 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~  495 (615)
                      -++++++-|.+..+.......-.++.+-....+.-+.+ .|++.++.++......-..++.....|++....  ++ +..
T Consensus       257 ~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~--~p-l~~  332 (510)
T KOG3574|consen  257 LLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGP--RP-LNV  332 (510)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCC--Cc-chH
Confidence            34556666777777777777777777777777888877 699999988765444444444444444333211  11 111


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhcc-c----cc---hHHHHH-HHHHHhhhh-hhhhhhhhhhhhccCcchhhHHHHHHHH
Q 007159          496 AVRKIMQSIGFLGPAFFL-TQLSH-V----RT---PAMAVL-CMACSQGSD-AFSQSGLYSNHQDIGPRYAGVLLGLSNT  564 (615)
Q Consensus       496 ~~~~~~~~~~~~~~~~~l-~~~~~-~----~~---~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~gl~~~  564 (615)
                      -.+.+-.-++.......+ ..... .    ..   +..+.+ .-.+..++. ..+........+..+|...|+.+.+.|+
T Consensus       333 ~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNT  412 (510)
T KOG3574|consen  333 FLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNT  412 (510)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHH
Confidence            111111111111111111 11111 1    11   111111 122222222 2223333334556678999999999999


Q ss_pred             HHHHHHHHHHHHhhheeccCCh
Q 007159          565 AGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       565 ~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ..++|+---..+.+++.|...+
T Consensus       413 LsnLGg~wp~tv~l~l~D~ltv  434 (510)
T KOG3574|consen  413 LSNLGGNWPGTVALWLADGLTV  434 (510)
T ss_pred             HHHhcCCcHHHHHHHhcccCce
Confidence            9999999988999999886543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=3.6e-08  Score=105.06  Aligned_cols=181  Identities=12%  Similarity=0.044  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~  503 (615)
                      +.++...+..+..+...+.+....+.+-++.+|++..+.+++.++..++..+.++..|++.||+|.|+......  .+..
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~--ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST--AILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHH
Confidence            44555555544444444444444555555469999999999999999999999999999999999997544322  1111


Q ss_pred             HHHHHHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhee-
Q 007159          504 IGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL-  581 (615)
Q Consensus       504 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~-  581 (615)
                      +..+...+  ......+++. +.+..++.+.+ .....+....+....+++++|++.|+....+++|..+++++...+. 
T Consensus       112 i~~~~~~~--a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        112 IPCVWLGI--AVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHH--HHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            11111110  0000112333 33334444443 4445555555666788899999999997666666665554443322 


Q ss_pred             ----c-------------cCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          582 ----Q-------------RGSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       582 ----~-------------~~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                          +             ..+++.++++..++.+++.++.++..+
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                2             233677777777777666655555433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.97  E-value=1.5e-08  Score=103.49  Aligned_cols=150  Identities=22%  Similarity=0.224  Sum_probs=125.6

Q ss_pred             HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHh
Q 007159          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGI  309 (615)
Q Consensus       230 ~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~  309 (615)
                      ...-..++|++..++.++.....+..+++++++|+|.||+|.|+++.++++++.+..+...+..  .-..+.++.++.|+
T Consensus       276 ~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~  353 (438)
T COG2270         276 GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWILGLLVGT  353 (438)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHH
Confidence            3334559999999999999999999999999999999999999999999999888877655554  33456677789999


Q ss_pred             hhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHHHHHH
Q 007159          310 GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       310 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~  381 (615)
                      ..|......-++..+..|++|-++.+|+++...-.+..+||.+.+.+.+..| -|..+..+.++..+.++++.
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            9999999999999999999999999999999999999999999999988665 56666655555444444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.97  E-value=4.2e-08  Score=104.92  Aligned_cols=154  Identities=10%  Similarity=0.081  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 007159          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP  522 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  522 (615)
                      ....+|.. .+.+|.+....++..+++.++..++.++.|+++||+|||+.+..+.         ++..+........+..
T Consensus        35 ~~p~l~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~---------~~~~~~~~~~~~a~~~  104 (413)
T PRK15403         35 IQPGIINV-VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA---------LIFTLACAATLFTTSM  104 (413)
T ss_pred             hccCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH---------HHHHHHHHHHHHcCCH
Confidence            33344554 4458999999999999999999999999999999999997554321         1111111111122333


Q ss_pred             H-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHH
Q 007159          523 A-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       523 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~  601 (615)
                      . +.+.-++.+.+.............+..++++++++.++.+....++..+||.+++.+.+..||+..|++.+++.+++.
T Consensus       105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~  184 (413)
T PRK15403        105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3 333333333333222222222334455678899999999999999999999999999988999999999888877766


Q ss_pred             HHHHH
Q 007159          602 LVWNL  606 (615)
Q Consensus       602 l~~~~  606 (615)
                      +..++
T Consensus       185 ~~~~~  189 (413)
T PRK15403        185 VGLLL  189 (413)
T ss_pred             HHHHH
Confidence            55433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.96  E-value=3.9e-08  Score=93.59  Aligned_cols=359  Identities=13%  Similarity=0.104  Sum_probs=191.2

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHH
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~l  300 (615)
                      .+...-+|++..+.+.+|....++|.++-......+++..+.|-++|+.|||+.-+.-.+.+.++++ .-.++  .+-.+
T Consensus        51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSp--qYkVL  127 (454)
T KOG4332|consen   51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSP--QYKVL  127 (454)
T ss_pred             hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCC--ceEEE
Confidence            4445566777778889999999999998888888899999999999999999976554444444333 22333  56779


Q ss_pred             HHHHHHHHhhhcchhhHHHHHhhhcccccchhhH-------HHHHH-HHHHHHHHHHhhhHhhhhcCC--CchHHHHHHH
Q 007159          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS-------LAFVY-SGMYLGSVTGLAVSPILIQKF--GWPSVFYSFG  370 (615)
Q Consensus       301 l~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~-------~~~~~-~~~~lG~~ig~~l~~~l~~~~--gw~~~f~~~~  370 (615)
                      +++|++.|++.+..+.+..++...-- .++|+.-       ++-.. .+..+-.+++.+.+..+.+.+  |.-..|-..+
T Consensus       128 mVGR~LGGiaTsLLFSaFEsWliaEH-nekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa  206 (454)
T KOG4332|consen  128 MVGRVLGGIATSLLFSAFESWLIAEH-NEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA  206 (454)
T ss_pred             eehhhhhhHHHHHHHHHHHHHHHHHh-hhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence            99999999999999988888754332 1233321       11111 233444556666666666654  4455565544


Q ss_pred             HHHHHHHHHHHhhhcC---CCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-H
Q 007159          371 SLGSIWFALWLKKAYS---SPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT-W  446 (615)
Q Consensus       371 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~  446 (615)
                      .+..+...+.+....+   .|.+++.....-+               ...+-+..++++.++..+..++-..++.+.. |
T Consensus       207 cfLaigmAvil~~W~ENygdps~~kdlltqf~---------------gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLW  271 (454)
T KOG4332|consen  207 CFLAIGMAVILSSWSENYGDPSENKDLLTQFK---------------GAARAIASDEKIALLGAIQSLFEGSMYTFVFLW  271 (454)
T ss_pred             HHHHHHHHHHHhhhhhccCChhhhHHHHHHhh---------------HhHHHHhcchHHHHHHHHHHHHhhhhheeeeee
Confidence            4444433333332222   2222111111100               0223455667776666555555544444433 4


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HH
Q 007159          447 MPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MA  525 (615)
Q Consensus       447 ~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  525 (615)
                      .|..--+..+   .--|.+++-+.++.++|+-+..++..|-..+--...-+...+....+.+........+....+. .+
T Consensus       272 TPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~  348 (454)
T KOG4332|consen  272 TPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESL  348 (454)
T ss_pred             cccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHH
Confidence            4433211111   2247788888888888888777776664443221111111111111111111111111112222 23


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc--CChhHHHHHHHHHHHHHHHH
Q 007159          526 VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR--GSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~--~g~~~~f~~~~~~~l~~~l~  603 (615)
                      +.+..+-.+.+.+++.....-.+.+|.+.|++.+-++..--++-.-++-  .-.-.+.  .+-+.+|-++.+...++.+.
T Consensus       349 i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvL--ynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  349 IGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL--YNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh--eecccccCccccchhhhhhHHHHHHHHHH
Confidence            3333333444445555555566667778888766554433333222211  1111122  34457777777777666544

>TIGR00896 CynX cyanate transporter

Probab=98.95  E-value=2.9e-08  Score=103.86  Aligned_cols=135  Identities=13%  Similarity=0.068  Sum_probs=107.5

Q ss_pred             hHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-CCchHHHHHHHHHHHHHHHHHhhhccChHHHHH
Q 007159          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLI  302 (615)
Q Consensus       224 ~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~  302 (615)
                      .......|.+.++.|.+..+.+++.+++.++.+++.++.|++.||+ +||+.+.++.++.+++.+++.+...  .... .
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~  290 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM--HGLW-A  290 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh--hHHH-H
Confidence            3344567777778899999999999999999999999999999999 5666777777777777776666542  2222 2


Q ss_pred             HHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC
Q 007159          303 MRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (615)
Q Consensus       303 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g  361 (615)
                      ..++.|++.+...+...+.+.+..+ +++++...++.+....+|.++||.+.|++.++.|
T Consensus       291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567899999998888787766554 4667888999998889999999999999998765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00898 2A0119 cation transport protein

Probab=98.94  E-value=2.1e-08  Score=110.27  Aligned_cols=147  Identities=14%  Similarity=-0.022  Sum_probs=111.3

Q ss_pred             HHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhh
Q 007159          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE  311 (615)
Q Consensus       232 ~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~  311 (615)
                      .....++.+..   +...+..+..+.+.++.+++.||+|||+.+.++.++.+++.++..+.+....+..++..++.+++.
T Consensus       348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            33445555432   333445567778888999999999999999999998888888777766333344556666777777


Q ss_pred             cchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Q 007159          312 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       312 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      +..++....+..|.+|++.|+.++|+.+....+|.+++|.+.+ +. ..++...+++.+++.++..++.+..
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            8888899999999999999999999999999999999999988 43 3566677777776666655554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.93  E-value=9.1e-08  Score=102.10  Aligned_cols=171  Identities=10%  Similarity=0.023  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 007159          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~  505 (615)
                      ++.+++..++..+........+|.+ ++.+|.+..+.|++.+...++..+++++.|++.||+|+|+....+.       .
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~-------~   76 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL-------F   76 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH-------H
Confidence            4455555555555555555677766 5668999999999999999999999999999999999996544322       1


Q ss_pred             HHHHHHHHHH-hccccchHHH-HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 007159          506 FLGPAFFLTQ-LSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR  583 (615)
Q Consensus       506 ~~~~~~~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~  583 (615)
                      +...+..+.. ....+.++.+ +..++.+.+.............+..+++++++..++.+.+..+|..++|.+.+.+...
T Consensus        77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1111111111 1112233333 3334444444333333333344455678899999999999999999999999887532


Q ss_pred             --------------------------CChhHHHHHHHHHHHHHHHHH
Q 007159          584 --------------------------GSWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       584 --------------------------~g~~~~f~~~~~~~l~~~l~~  604 (615)
                                                .+|+.+|++.+++.++..+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      358899988887766655444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.93  E-value=2.3e-08  Score=121.14  Aligned_cols=144  Identities=15%  Similarity=0.218  Sum_probs=120.0

Q ss_pred             HhHHH-HHhhcCCCch-hhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 007159          228 IAILP-MSKEFNWNST-TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (615)
Q Consensus       228 ~~~~~-i~~~~g~s~~-~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~  305 (615)
                      ..+|. +.+.+|++.. +.|++.++..++.+++.+++|++.||+++++++.++.++.+++.++..+..  +.+.++++.+
T Consensus       253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  330 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVLFF  330 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence            34444 4667899998 999999999999999999999999999999999888888888887777766  6777888889


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCCchHHHHHHHHHH
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFGSLG  373 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~gw~~~f~~~~~~~  373 (615)
                      +.|++.++..+...+++.+..|+++|++++|+.+....+|.++++.+++.+.. .+++...|++.+.+.
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888888876654 234555665544443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.92  E-value=7.2e-07  Score=92.56  Aligned_cols=321  Identities=13%  Similarity=0.084  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhh
Q 007159          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS  323 (615)
Q Consensus       244 ~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~  323 (615)
                      .+.+.-+-.+..++..+.+.++.+|+..+.=+.+..++..++.++.++++  +.++-+++-++.+++.|........+..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            34566667778888888888889998876666677778888999888887  7777888888999999988888888754


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc--hHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccc----HH
Q 007159          324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR----AE  397 (615)
Q Consensus       324 ~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  397 (615)
                       .+++    ...+-+..+.+.++++|+..--.+.. .|+  |..+++...+.++..+.++...+.++.+.+..+    .+
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~  212 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDE  212 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCc
Confidence             5543    35778888888889988887766666 554  667776666655444444433332221111000    00


Q ss_pred             HHhhhhcCCcc---ccccccccHHH-HhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHhCCChhHHHHHHHHHHH
Q 007159          398 EKRHILGGSIS---KEAVSVIPWKL-ILSKAPVWALIISHFCHNWGTFILLT-WMPTYYN-QVLKFNLTESGLFCVLPWL  471 (615)
Q Consensus       398 ~~~~~~~~~~~---~~~~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~~~-~~~g~s~~~~g~~~~~~~i  471 (615)
                      ..++.......   .+......+++ +.+-++++..++-.++.++..+.++. ..|...- ....-......++...+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~  292 (402)
T PF02487_consen  213 AEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQL  292 (402)
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence            00000000000   00001111211 11222333333333444445544433 3333321 1112123344555556666


Q ss_pred             HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccC
Q 007159          472 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG  551 (615)
Q Consensus       472 ~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (615)
                      |..+++--..++    .-|++.+..   ++..+-++...+-......++.+.+++.++..|..++..+......+.++.+
T Consensus       293 GVFISRSS~~~~----rir~lwils---~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~  365 (402)
T PF02487_consen  293 GVFISRSSLPFF----RIRRLWILS---LLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVP  365 (402)
T ss_pred             HHhhhhcceeee----ehhhHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence            665555433221    223222211   1111111111111111112233333444555555555566666667788888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007159          552 PRYAGVLLGLSNTAGVLAGVFGTAATGY  579 (615)
Q Consensus       552 ~~~~g~~~gl~~~~~~lg~~igp~l~G~  579 (615)
                      +++|..++|.....-.+|..++..++=.
T Consensus       366 ~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  366 PEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999888888888776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=7.7e-07  Score=93.85  Aligned_cols=317  Identities=15%  Similarity=0.047  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhccc
Q 007159          248 QSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP  327 (615)
Q Consensus       248 ~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~  327 (615)
                      .++.+..+.++.++.+.+.|+.|.|+.+.++..++....+.+.+.   |-+.+++...+.|+|.+..+..-..++++..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            777888888999999999999999999999999999887776655   45568899999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCC--------Cc-hHH----------HHHHHHHHHHHHHHHHhhhcCCC
Q 007159          328 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--------GW-PSV----------FYSFGSLGSIWFALWLKKAYSSP  388 (615)
Q Consensus       328 ~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~--------gw-~~~----------f~~~~~~~~~~~~~~~~~~~~~~  388 (615)
                      ++.+.+..++..+....+.++|..+...+....        +- ++.          ..+.+++..+..+... .....|
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i-~~~~~p  211 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSII-NFDFLP  211 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhh-heeecC
Confidence            999999999999988888888876654443211        11 111          1111111111111011 011111


Q ss_pred             CCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCh-hHHHHH
Q 007159          389 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNL-TESGLF  465 (615)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~--~g~s~-~~~g~~  465 (615)
                      .++.....+..+       ..........-++++++++..+....+..++.........|..+.-.  .+.+. ...++.
T Consensus       212 ~~~~~~~~~~~~-------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~  284 (461)
T KOG3098|consen  212 SKDVVNCKSSSE-------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIY  284 (461)
T ss_pred             ccchhhhhhhcc-------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHH
Confidence            111100000000       00000001223355666766666655555444444444555544322  23332 234555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc----------------cchHHHHHHH
Q 007159          466 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV----------------RTPAMAVLCM  529 (615)
Q Consensus       466 ~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~  529 (615)
                      ....+++.+++....+.+.+|..+......    +.+...+......+.....+                +...+..++.
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~----~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPT----VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcc----hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            556667777777777777777654332111    11111111111111111111                1133455555


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 007159          530 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY  579 (615)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~  579 (615)
                      +..+..........+.+.....|+.+..+.++.-.-..++..++-.....
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            66666667777777777777778899998888888777777666555444

>PRK10133 L-fucose transporter; Provisional

Probab=98.89  E-value=6.7e-08  Score=104.07  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=111.4

Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcc
Q 007159          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~  313 (615)
                      .+.+|+++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.+  +. ..+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999888877777666655554  32 234566788999999


Q ss_pred             hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHH
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~  377 (615)
                      .+|...+...+..+ ++.+.+.++... ..+|..++|.+.|.+.+..| -+..|++..+..+...
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            99999999999885 456777777764 45788889999999999887 7888876555444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.89  E-value=3e-08  Score=120.00  Aligned_cols=150  Identities=13%  Similarity=0.075  Sum_probs=117.9

Q ss_pred             HHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh------------
Q 007159          226 MSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA------------  292 (615)
Q Consensus       226 ~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~------------  292 (615)
                      +....|.+ .+.+|.+..+.|++.+++.++.+++.++.|++.|+.++++.+..+.++.+++.+.+.+.            
T Consensus       244 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        244 VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            33445555 45689999999999999999999999999999998887776666666655555444332            


Q ss_pred             ------hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCCchHH
Q 007159          293 ------ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSV  365 (615)
Q Consensus       293 ------~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~gw~~~  365 (615)
                            ...+.+.+++..++.|++.+...+...+++.+..|++.+|+++|+.+....+|..+|+++++.+.. ..++...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                  002556677888899999999999999999999999999999999999999999999999998874 4566766


Q ss_pred             HHHHHHHHHH
Q 007159          366 FYSFGSLGSI  375 (615)
Q Consensus       366 f~~~~~~~~~  375 (615)
                      |++.+++.++
T Consensus       404 ~~~~~~~~~~  413 (1140)
T PRK06814        404 ILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHH
Confidence            6655544333

>PRK09848 glucuronide transporter; Provisional

Probab=98.89  E-value=2.3e-08  Score=108.23  Aligned_cols=137  Identities=16%  Similarity=0.145  Sum_probs=107.0

Q ss_pred             HHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHH
Q 007159          226 MSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (615)
Q Consensus       226 ~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r  304 (615)
                      .....|.+ .+.+|.+....++......++.+++.++++++.||+|+|+++.++.++.+++.++..+.+..+++.+++..
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            33344444 44567666555555555567788899999999999999999999999888887777665433566677778


Q ss_pred             HHHHhhhcchhhHHHHHhhhccccc-------chhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVS-------ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      ++.|+|.+...+...++.+|..|.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999988654       358889999999999999999999988765554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.89  E-value=1.9e-06  Score=96.18  Aligned_cols=154  Identities=21%  Similarity=0.265  Sum_probs=124.1

Q ss_pred             hHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHHHHHHHhhhcc------ChHHHH
Q 007159          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARI------GLPFLL  301 (615)
Q Consensus       229 ~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~~~l~~~~~~~------~~~~ll  301 (615)
                      .+..+.+.+|++......+...+....-+.++++|.++|+ +|+++.+.++.++..++.++.++....      .....+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            3444566789999999999999999899999999999997 699999999999999999887764311      123356


Q ss_pred             HHHHHHHhhhcchhhHHHHHhhhccccc---chhhHHHHHHHHHHHHHHHHhhhHhhhhcC-------CCchHHHHHHHH
Q 007159          302 IMRAFMGIGEGVAMPAMNNMLSKWIPVS---ERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------FGWPSVFYSFGS  371 (615)
Q Consensus       302 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-------~gw~~~f~~~~~  371 (615)
                      ++..+..+|.|..-+...+...|-++++   ++-..+.++..+.++|..+++.+.+++.+.       .+|...|.+.++
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            7778889999999999999999999754   356778888889999999999999988743       369999998887


Q ss_pred             HHHHHHHHHHh
Q 007159          372 LGSIWFALWLK  382 (615)
Q Consensus       372 ~~~~~~~~~~~  382 (615)
                      +.++.++++..
T Consensus       170 ~m~ia~lvf~~  180 (654)
T TIGR00926       170 LMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHH
Confidence            77766665544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.88  E-value=2.8e-08  Score=108.02  Aligned_cols=172  Identities=11%  Similarity=0.039  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHH--------HHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVL--------GFGVI  280 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l--------~~~~~  280 (615)
                      ...++..+........+...+|.+ .+.+|.+..+.|++.++..++..++.++.|+++||+++|+..        ..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            333444444445555555667765 566899999999999999999999999999999998654221        11111


Q ss_pred             HHHHHHHHHHhhh-ccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC
Q 007159          281 WWSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (615)
Q Consensus       281 l~~i~~~l~~~~~-~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~  359 (615)
                      +...+..+..... ..+....+++..+.+.+.+...+.......+..| +.+|.++++.+....+|..++|.+.+.+.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       344 GLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            1111111111111 1133334444455555555555555555567664 5899999999999999999999999988765


Q ss_pred             C---CchHHHHHHHHHHHHHHHHHHh
Q 007159          360 F---GWPSVFYSFGSLGSIWFALWLK  382 (615)
Q Consensus       360 ~---gw~~~f~~~~~~~~~~~~~~~~  382 (615)
                      .   +|...|++.+++.++..++...
T Consensus       423 ~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       423 DSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHeee
Confidence            3   3888888877776665555444

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.88  E-value=1.2e-07  Score=99.55  Aligned_cols=158  Identities=11%  Similarity=-0.003  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccc-c
Q 007159          443 LLTWMPTYYNQVLKFNLTE-SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-R  520 (615)
Q Consensus       443 ~~~~~p~~~~~~~g~s~~~-~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  520 (615)
                      ...+...++.+.+|++..+ .|.++..+..+-.+..+++|++.||+|.|+++..+.         +.-.+...+.... +
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~---------l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQA---------LSFVCVWLLLLLGTS  114 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            3445555777789999999 999999999999999999999999999996544221         1111111111122 2


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhH---HHHHHHHHH
Q 007159          521 TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDD---VFKVAVVLY  597 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~---~f~~~~~~~  597 (615)
                      ...+.+.-++.|.+.+... .....+...+|+++|+++.|+.+....+|.++++++++++ ...||+.   ..++..+..
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Confidence            3334444455555555555 6666678889999999999999999999999999999994 4456554   444555555


Q ss_pred             HHHHHHHHHHhcCC
Q 007159          598 IIGTLVWNLFATGE  611 (615)
Q Consensus       598 l~~~l~~~~~~~~~  611 (615)
                      .+++++.+++.+.+
T Consensus       193 ~~a~~~a~~LP~~~  206 (511)
T TIGR00806       193 TFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHHHHhCCCCc
Confidence            55566655554433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.86  E-value=7.7e-08  Score=98.33  Aligned_cols=169  Identities=16%  Similarity=0.158  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Q 007159          434 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFL  513 (615)
Q Consensus       434 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l  513 (615)
                      +...+....+..-+-+.+.+.+|+|+.+.+++.++..+.+.+.+++.|.+.||+|.|+.....      .+..++..+.+
T Consensus        23 f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s------~~l~~IP~~~~   96 (417)
T COG2223          23 FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS------MLLLLIPCLGL   96 (417)
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH------HHHHHHHHHHH
Confidence            333344444444444555577999999999999999999999999999999999999754322      12223333333


Q ss_pred             HHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC---hhHHH
Q 007159          514 TQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS---WDDVF  590 (615)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g---~~~~f  590 (615)
                      ......+..+.++.+.++.+..++............+||+++|.+.|++. .+++|..+...++..++...+   |+.+.
T Consensus        97 ~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~  175 (417)
T COG2223          97 AFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA  175 (417)
T ss_pred             HHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            32222232233444444444444455555666777889999999999988 999999999999998888888   89888


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 007159          591 KVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       591 ~~~~~~~l~~~l~~~~~~~  609 (615)
                      .+..+..++..+++++..+
T Consensus       176 ~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         176 GIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            8888888887776666543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.3e-07  Score=90.98  Aligned_cols=134  Identities=14%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             HHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH-HHHHHHHhhhccChHHHHHHHHHHHh
Q 007159          231 LPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS-VATVLTPVAARIGLPFLLIMRAFMGI  309 (615)
Q Consensus       231 ~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~-i~~~l~~~~~~~~~~~ll~~r~l~G~  309 (615)
                      ..+.+.+|+|+...+-+.+......++..++.|.++||+|++...+.+..+.. ++-.+..+..    +-=.+...+.|+
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----lsPy~~m~~lGL  364 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----LSPYTSMTFLGL  364 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----ccHHHHHHHHhh
Confidence            34689999999999999999999999999999999999999977766554443 3434444432    223445667888


Q ss_pred             hhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC---chHHHHH
Q 007159          310 GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG---WPSVFYS  368 (615)
Q Consensus       310 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g---w~~~f~~  368 (615)
                      ..+..-......++...|+++.|++.|..+...++|.++.|+++|++.+.-|   |--+|++
T Consensus       365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl  426 (459)
T KOG4686|consen  365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL  426 (459)
T ss_pred             hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence            8888777788889999999999999999999999999999999999998654   4444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.80  E-value=2.8e-08  Score=103.83  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=142.6

Q ss_pred             HHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccC
Q 007159          217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG  296 (615)
Q Consensus       217 ~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~  296 (615)
                      ++.+.....+..++-.-.++.+..+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+.+....  |
T Consensus       381 v~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n  458 (618)
T KOG3762|consen  381 VVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--N  458 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--C
Confidence            33344444455555566888988888889888888999999999999999999999999999999999888888888  8


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHH-HHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSG-MYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +|..+...+++|+..+..+.+..+++++..||+-+..+-++.... .++|-.+|.+++|.+.+++|-|..|.+.++.+++
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999988774 4789999999999999999999999998888777


Q ss_pred             HHHHHHhh
Q 007159          376 WFALWLKK  383 (615)
Q Consensus       376 ~~~~~~~~  383 (615)
                      .+++....
T Consensus       539 ~l~~~~~i  546 (618)
T KOG3762|consen  539 TLALFISI  546 (618)
T ss_pred             HHHHHHHh
Confidence            66655543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.78  E-value=1.9e-07  Score=101.70  Aligned_cols=142  Identities=11%  Similarity=-0.013  Sum_probs=106.0

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh---hhccCh
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---AARIGL  297 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~---~~~~~~  297 (615)
                      ..........+.+.+....+....+++.++..++.+++.++++++.||+|+|+.++++.++.+++.+...+   ....+.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            33344444444555544445666777878777889999999999999999999999888776666554432   122245


Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHhhhccc-------ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       298 ~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      +.+++..++.|++.+...+...++++|..+       .++.|..++......-+|..+|+.+.|++.+..|+
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            667777788899999999999999999965       23346688999999999999999999998775554

>PRK09669 putative symporter YagG; Provisional

Probab=98.76  E-value=1.8e-07  Score=101.05  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=94.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHH
Q 007159          241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN  320 (615)
Q Consensus       241 ~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~  320 (615)
                      ....+.+.....++.+++.++++++.||+|+|+.+.++.++.++..+...+.+..+.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566677788888999999999999999999888876665444333332225666777888999999999999999


Q ss_pred             Hhhhcccc-------cchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          321 MLSKWIPV-------SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       321 ~i~~~~~~-------~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      +++|..+.       +..|..++..+....+|..+|+.++|++.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998852       2236678888889999999999999998876665

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.76  E-value=6.5e-08  Score=85.66  Aligned_cols=133  Identities=14%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhh
Q 007159          467 VLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYS  545 (615)
Q Consensus       467 ~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  545 (615)
                      +...++..++.++.|++.||+++|+......       ....  ............+ ..+...+.+.+.....+.....
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   75 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGL-------FIFV--LSTAMFALSSNITVLIIARFLQGFGAAFALVAGAAL   75 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHH-------HHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3456777888999999999999986543221       1111  1111111122333 3333333333333333344444


Q ss_pred             hhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          546 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       546 ~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      ..+..++++++++.++.+....+|..++|.+.+.+.+..+|+..+.+.+++.+++.+......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcC
Confidence            566677799999999999999999999999999999999999999888887777766655543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.76  E-value=2.3e-07  Score=99.72  Aligned_cols=147  Identities=18%  Similarity=0.152  Sum_probs=118.1

Q ss_pred             HHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcc
Q 007159          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (615)
Q Consensus       216 ~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~  295 (615)
                      .++............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+..
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~  313 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG  313 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence            33344444444545555554432234678888889999999999999999999999999999999999999888777634


Q ss_pred             ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccc-------cchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV-------SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      +.+.+++..++.|++.+...+...++++|..+.       ++.|..+|+.....-+|..+++.+.+.+.+..|+
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            678899999999999999999999999999863       3358889999999999999999998888765443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.9e-08  Score=99.19  Aligned_cols=145  Identities=16%  Similarity=0.130  Sum_probs=111.7

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhh
Q 007159          455 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQG  534 (615)
Q Consensus       455 ~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  534 (615)
                      ++-+..++|++++...+..++.+++.|.+.||+|.+         +.+.+++..+.....++.+.+.+++.++.=.+-+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence            455667899999999999999999999999999999         44445555555555555566666655555444444


Q ss_pred             hhhhhhh-hhhhhhhccCc-chhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          535 SDAFSQS-GLYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       535 ~~~~~~~-~~~~~~~~~~~-~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      ..++... ....+++.++. ++|++++|+.-.+..+|..+||+++|.++|..|+...|+++++++++..++-++..
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            4444444 44445555665 45799999999999999999999999999999999999999999988877765543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.73  E-value=7.3e-08  Score=96.04  Aligned_cols=132  Identities=9%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccc
Q 007159          251 FFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE  330 (615)
Q Consensus       251 ~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~  330 (615)
                      ..+.-+-|.++.+.+.||+|||+.+....+++++..++...+...+.  ..+..+..-++.++.+.+.+.|..|.+|..-
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~--~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA--YTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            34556668889999999999999999999999999988777764343  3333333344455566778899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 007159          331 RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYS  386 (615)
Q Consensus       331 r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  386 (615)
                      |+...|......-+|+++.|+++ ...+ ..-..+..+.+.+.++..+...+++.+
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeeeec
Confidence            99999999999999999999998 3333 333334444555555555555554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.73  E-value=4e-07  Score=95.21  Aligned_cols=159  Identities=11%  Similarity=0.018  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhccccHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          442 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-----VSKGLSITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       442 ~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      .....+|.+.++ .|++..+.|++... .+...+ .++.|.+.||+     ||||..+..      .............+
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~------~~~~~~~~~~~l~~   76 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVL------TQVLLLSLLLILSF   76 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHH------HHHHHHHHHHHHHc
Confidence            344567788877 69999999998644 344344 88999999998     666543211      11111111111111


Q ss_pred             cc-ccchHHHHHHHHHHhhhhhhhhh-hhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC--------h
Q 007159          517 SH-VRTPAMAVLCMACSQGSDAFSQS-GLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS--------W  586 (615)
Q Consensus       517 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g--------~  586 (615)
                      .. ....+.+....++.........+ ......+..++++|+.+.|+......+|..+++.+++.+.+..+        |
T Consensus        77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w  156 (356)
T TIGR00901        77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW  156 (356)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            11 12222222222222222232223 33335566778999999999999999999999999999998877        9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc
Q 007159          587 DDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      +..|++.+++.+++.++.++..+
T Consensus       157 r~~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988877776655444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.71  E-value=5.7e-07  Score=96.62  Aligned_cols=177  Identities=13%  Similarity=0.096  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhccccHHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD----TLVSKGLSITAVRKI  500 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~d----r~g~~~~~~~~~~~~  500 (615)
                      ++..+....+...+++.....+++.|+++ +|.+....++++.+..+...+..++.|+++|    |+|||+..+...   
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g---   80 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG---   80 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH---
Confidence            34455555666677777778888888866 8999999999999999999999999999999    599997654321   


Q ss_pred             HHHHHHHHHHHHHHHhccccc--------------h---HHHHHHH-HHHhhhhhhhhhhhhhhhhccCcchh--hHHHH
Q 007159          501 MQSIGFLGPAFFLTQLSHVRT--------------P---AMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYA--GVLLG  560 (615)
Q Consensus       501 ~~~~~~~~~~~~l~~~~~~~~--------------~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g  560 (615)
                           .....+.+..+.....              .   +..+..+ +..........+......+..+++++  +.+.+
T Consensus        81 -----~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        81 -----AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             -----HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence                 1111111111111111              0   1112222 22222223333333345555665543  68999


Q ss_pred             HHHHHHHHHHHHHHHHhhhe--ecc-------------CChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          561 LSNTAGVLAGVFGTAATGYI--LQR-------------GSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       561 l~~~~~~lg~~igp~l~G~l--~~~-------------~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      +.+...++|..+|+.++|+.  .+.             .+++.+|++.+++++++.++..+..++
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            99999999999999999875  221             167888998888888877776665444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=9.9e-07  Score=88.50  Aligned_cols=160  Identities=13%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             hhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHHHHHHHhhhccChHH
Q 007159          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPF  299 (615)
Q Consensus       221 ~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~  299 (615)
                      +..+.....+|.+..|.|+|..+.|++.++..+..+...+....+.+| -++|+..+...+++.++.+.+.+.+...++.
T Consensus       222 ~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l  301 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL  301 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            444555667999999999999999999999999999999999999996 4678888888888888888888877433322


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHhhhccc-ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHH
Q 007159          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       300 ll~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~  377 (615)
                      .   .++.|+|.|..++.+..++.+-.+ +++.++-.++.+...++=..+||.+.|++.+..| |...++.+....++..
T Consensus       302 w---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         302 W---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             H---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            2   489999999999999999998775 4556677788888888888999999999998765 9988887777766666


Q ss_pred             HHHHhh
Q 007159          378 ALWLKK  383 (615)
Q Consensus       378 ~~~~~~  383 (615)
                      +.-+..
T Consensus       379 i~Gl~a  384 (395)
T COG2807         379 IFGLRA  384 (395)
T ss_pred             HHHhhc
Confidence            555543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.69  E-value=8e-07  Score=89.36  Aligned_cols=156  Identities=29%  Similarity=0.569  Sum_probs=124.8

Q ss_pred             hhhhhHHHHhHHHHHhhcCCCc--hhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccCh
Q 007159          220 NMDRVNMSIAILPMSKEFNWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL  297 (615)
Q Consensus       220 ~~~~~~~~~~~~~i~~~~g~s~--~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~  297 (615)
                      ..+........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+....+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          15 GLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence            3555666677888888887666  48899999999999999999999999999998888888765555566666552237


Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHhhhcccc-cchhhHHHHHHH-HHHHHHHHHhhhHhhhhcC--CCchHHHHHHHHHH
Q 007159          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV-SERSRSLAFVYS-GMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLG  373 (615)
Q Consensus       298 ~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~lG~~ig~~l~~~l~~~--~gw~~~f~~~~~~~  373 (615)
                      +.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..+++.+++.+...  .+|++.|++.....
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            7889999999999999999999999999976 678888888888 5788889998887776654  67998776655554


Q ss_pred             HH
Q 007159          374 SI  375 (615)
Q Consensus       374 ~~  375 (615)
                      ..
T Consensus       175 ~~  176 (338)
T COG0477         175 LL  176 (338)
T ss_pred             HH
Confidence            33

>PTZ00207 hypothetical protein; Provisional

Probab=98.68  E-value=1.7e-06  Score=95.03  Aligned_cols=163  Identities=10%  Similarity=0.057  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       441 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      +.+..+.| .+++.+|++..+.+.+..+.. ...+..++.|++.||+|+|+++..+.  .+..++.+..++..-.....+
T Consensus        44 y~fsv~s~-~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~--ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         44 YAFNLISG-AMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSM--TVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHH-HHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHHhcccccCc
Confidence            34444445 456669999999998877643 33456667899999999997655432  222222222222100000112


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHH
Q 007159          521 TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG  600 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~  600 (615)
                      .+.+.+..++.+.+.............+. .|++||++.|+......+|..+.+.+...+.. .++...|++.+++.++.
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~-Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSV-FPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            22333333344444333344444444544 46899999999999999999865444444433 45778888888777776


Q ss_pred             HHHHHHHhc
Q 007159          601 TLVWNLFAT  609 (615)
Q Consensus       601 ~l~~~~~~~  609 (615)
                      .+++..+.+
T Consensus       198 ~ll~~~~vr  206 (591)
T PTZ00207        198 GILAIVFMR  206 (591)
T ss_pred             HHHHHhhee
Confidence            666555433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.63  E-value=9.6e-08  Score=98.50  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=117.3

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHH
Q 007159          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMA  530 (615)
Q Consensus       452 ~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~  530 (615)
                      ++.+|.+....|++...+.+...+.+++.|++.||+.|++++..+...+.  ++.++.++       ...++ +++.-.+
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~--~Av~~~~f-------s~~Fwq~~l~R~~  130 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT--LAVFASGF-------SNHFWQVLLCRGF  130 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH--HHHHHHHH-------HHHHHHHHHHHHH
Confidence            45589999999999999999999999999999999999987765432221  11222211       23334 4444456


Q ss_pred             HHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCC-hhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          531 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g-~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      .+.+.....+.....+.+.++.++|++++++++.+..+|..+|-+.++.+.+..+ |++.|.+.+++.++..++.+++.+
T Consensus       131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            6666666666666667777788999999999999999999999999999998855 999999999999888888777766


Q ss_pred             CCc
Q 007159          610 GER  612 (615)
Q Consensus       610 ~~k  612 (615)
                      +++
T Consensus       211 eP~  213 (493)
T KOG1330|consen  211 EPE  213 (493)
T ss_pred             Ccc
Confidence            543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.62  E-value=4.2e-07  Score=97.56  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=117.6

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 007159          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS  532 (615)
Q Consensus       453 ~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  532 (615)
                      ..+.++..+-+++++....|.+++.+.+|++.||+|.|+++..+.      +......++.........+.++++-++.|
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~------~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISG------LISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHH------HHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            357899999999999999999999999999999999997654322      11111112222222223334455555666


Q ss_pred             hhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheecc-CChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          533 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      .+.+...+.......+..|+++|++..++......+|.+++-++.|++.+. .||+.+|++.+++.++..+++.++.+.
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            666666666666788889999999999999999999999999999999999 999999999999999998888777553

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.61  E-value=3.3e-07  Score=102.91  Aligned_cols=165  Identities=12%  Similarity=0.076  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhc----
Q 007159          442 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS----  517 (615)
Q Consensus       442 ~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----  517 (615)
                      ++....-.-+++.++++..+.|++.+.+.++.+++.++.+++.||.++++.+..+.  ++..++.++.++.-+...    
T Consensus        50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~--ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC--AIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH--HHHHHHHHHHhChHHhcCCccc
Confidence            33333333455669999999999999999999999999999999999998776543  333333333322111000    


Q ss_pred             --------------------c--------------------ccch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhh
Q 007159          518 --------------------H--------------------VRTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG  556 (615)
Q Consensus       518 --------------------~--------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  556 (615)
                                          .                    ...+ .+++.-++.+.+.....+.....+.+..++++++
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                0                    0012 2334445555555555555555566677889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeccC----------------------ChhHHHHHHHHHHHHHHHHHHHHh
Q 007159          557 VLLGLSNTAGVLAGVFGTAATGYILQRG----------------------SWDDVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       557 ~~~gl~~~~~~lg~~igp~l~G~l~~~~----------------------g~~~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      ...|+.+....+|..+|++++|++.+.+                      .|+..|++.+++.++..+.++++.
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999987542                      267778888877777665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.60  E-value=5.8e-07  Score=94.11  Aligned_cols=181  Identities=13%  Similarity=0.112  Sum_probs=130.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccHHHH
Q 007159          423 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK----FNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAV  497 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g----~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~-g~~~~~~~~~  497 (615)
                      .+.++.++..-+.--+++|++-..+..|+...++    ++..++.-++..+....-+..+++||++||+ |+|+...   
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~---   96 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV---   96 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH---
Confidence            4567888888899999999999999999988888    9999998888888888888899999999997 5554322   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCc--chhhHHHHHHHHHHHHHHHHHH
Q 007159          498 RKIMQSIGFLGPAFFLTQLSH-VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP--RYAGVLLGLSNTAGVLAGVFGT  574 (615)
Q Consensus       498 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~gl~~~~~~lg~~igp  574 (615)
                          +...+...+-..+.... .....+.+...++..+.+.+=+.......+..++  .+|-..++++.+..++|+.++|
T Consensus        97 ----lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          97 ----LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             ----HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence                22222222222222221 1233344444444444444433333344444443  2377788899999999999999


Q ss_pred             HHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          575 AATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       575 ~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      .+.+++.+.+||...|..+++-+.++++.+++.+|.
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence            999999999999999999999999999988877654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.59  E-value=2.6e-07  Score=92.78  Aligned_cols=116  Identities=16%  Similarity=0.064  Sum_probs=88.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 007159          458 NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDA  537 (615)
Q Consensus       458 s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  537 (615)
                      +....|++-+.+++...+.+.++|.++||+|||.+         +.++.+..++..+.+....+...++..=++++.+-+
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv---------ll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg  136 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV---------LLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG  136 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            44567888899999999999999999999999943         334444444555555555666444444556666655


Q ss_pred             hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          538 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                      ........+.+..++++|+.+++.+++..++|..+||.++|++.+
T Consensus       137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            555555556666778999999999999999999999999999988

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.59  E-value=3.2e-06  Score=83.85  Aligned_cols=361  Identities=12%  Similarity=0.089  Sum_probs=212.0

Q ss_pred             hhcCCCchhhH-HHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcc
Q 007159          235 KEFNWNSTTVG-LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       235 ~~~g~s~~~~g-~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~  313 (615)
                      .+.|++..++. -+.-+..-.+.+.-.+.=.+.|-.-.|++++.-.+...+..++..+.+  +.+.+=+.-++.|...+.
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tAa  111 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATAA  111 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHHH
Confidence            45566665543 222233334555556666788988889988877666666666666666  666677777888877543


Q ss_pred             hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHH--HHHHHHHHHHHHHHHhhhcCCCCCC
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF--YSFGSLGSIWFALWLKKAYSSPKED  391 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~  391 (615)
                       ..+..+++-...+++++.++.+...++.-.|...|..++-.++..-.+....  ++......+..++..+. |+.++..
T Consensus       112 -EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL-P~v~rSl  189 (433)
T KOG3810|consen  112 -EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL-PRVKRSL  189 (433)
T ss_pred             -HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC-CCCchhh
Confidence             4677788888889999999999999999999999988888877643333222  22111112222222222 2222110


Q ss_pred             ccccHHHHhh-----hhcCCccc-c------ccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 007159          392 PELRAEEKRH-----ILGGSISK-E------AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK-FN  458 (615)
Q Consensus       392 ~~~~~~~~~~-----~~~~~~~~-~------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g-~s  458 (615)
                      -..+.+++..     ..+..... +      ......++...++|.+....+-..+...+++....+......+.-. -.
T Consensus       190 ~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~  269 (433)
T KOG3810|consen  190 YFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPA  269 (433)
T ss_pred             hhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCch
Confidence            0000000000     00000000 0      0012244556677887777777777777888888887777766421 11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH-hhhhh
Q 007159          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS-QGSDA  537 (615)
Q Consensus       459 ~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~  537 (615)
                      ....|..-++..+.++++.+..|.+.-.+.+.+       ..++.++.+.-+.+++.+......++..+...+. .....
T Consensus       270 ~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g-------~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l  342 (433)
T KOG3810|consen  270 NVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG-------DLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQL  342 (433)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHheeeccchhh-------HHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhh
Confidence            222356666777778888888888765554442       2344444555555555666666666655554444 33334


Q ss_pred             hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccC-----------ChhHHHHHHHHHHHHHHHHHHH
Q 007159          538 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-----------SWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~-----------g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      ..+.+...++.....|.-|..+|+...+.-+-..+   +.-.+.|.-           =|..-|++.+++.+++..+...
T Consensus       343 ~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  343 TITIATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             hhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            44455556777788899999999987665554443   444455521           1445577778888887665444


Q ss_pred             Hhc
Q 007159          607 FAT  609 (615)
Q Consensus       607 ~~~  609 (615)
                      ..+
T Consensus       420 ~~~  422 (433)
T KOG3810|consen  420 MCR  422 (433)
T ss_pred             Hhh
Confidence            433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.53  E-value=6.7e-07  Score=97.07  Aligned_cols=128  Identities=14%  Similarity=0.144  Sum_probs=110.4

Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhh-hc-------cChHHHHHHHH
Q 007159          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA-AR-------IGLPFLLIMRA  305 (615)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~-~~-------~~~~~ll~~r~  305 (615)
                      .+.+|+++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+..... ..       .+.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            35789999999999999999999999999999999999999999999998877553211 00       12334566678


Q ss_pred             HHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC
Q 007159          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (615)
Q Consensus       306 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g  361 (615)
                      +.+++.+..+.+...++.+..|++.++..+++.....++|..+++.+++.+.++.|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.51  E-value=3.9e-06  Score=88.64  Aligned_cols=147  Identities=15%  Similarity=0.094  Sum_probs=115.9

Q ss_pred             HHHHHhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh
Q 007159          215 AFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~  293 (615)
                      ..++......+.......+ ...+|.+.....+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            3334444444444444443 344576777777888888888888899999999999999999999999999999988887


Q ss_pred             ccChHHHHHHHHHHHhhhcchhhHHHHHhhhccccc-------chhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC
Q 007159          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS-------ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (615)
Q Consensus       294 ~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g  361 (615)
                      ..+.+++++..++.+++.+...+...++++|..+-+       .-|...+......=+|.+++..+.|++.+..|
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            656788888899999999999999999999887532       23677888888888899999988888876555

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.48  E-value=0.00076  Score=72.72  Aligned_cols=279  Identities=10%  Similarity=0.046  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhc---CCCchhhHHHHHHHHH-HHHHHHHhhHHhhhhcCCchHHHHHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF---NWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVLGFGVIW  281 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---g~s~~~~g~i~s~~~l-~~~l~~~~~G~l~Dr~Grk~~l~~~~~l  281 (615)
                      ++.++.+.+.+|+..+..+..-.    +.+.+   ...++.+.++=....+ ..++...+..++++++++.+++-+....
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRD----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            44455555555555444443322    22222   1245556666554444 3445577789999999999987766655


Q ss_pred             HHHHHHHHHhhh-------ccC----------------------hHHHHHHHHHHHhhhcchhh-HHHHHhhhcccccch
Q 007159          282 WSVATVLTPVAA-------RIG----------------------LPFLLIMRAFMGIGEGVAMP-AMNNMLSKWIPVSER  331 (615)
Q Consensus       282 ~~i~~~l~~~~~-------~~~----------------------~~~ll~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r  331 (615)
                      +.....++++.-       +.+                      .|...+..++.-+-.+.... .-..+..+.++.+|.
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            555554444321       000                      11222222333333334333 468889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhHhhhhc---------CCCchHHHHHHH----HHHHHHHHHHHhhhcCCCCCCccccHHH
Q 007159          332 SRSLAFVYSGMYLGSVTGLAVSPILIQ---------KFGWPSVFYSFG----SLGSIWFALWLKKAYSSPKEDPELRAEE  398 (615)
Q Consensus       332 ~~~~~~~~~~~~lG~~ig~~l~~~l~~---------~~gw~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (615)
                      .+..+++..+.++|.++++.+..++.+         .-.|...+..+.    +.+.+...+ .....+...+++......
T Consensus       179 KRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~~~vl~~~~~~~~~  257 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL-YRYMNKNVLTDPRFYPSA  257 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccchhh
Confidence            999999999999999999998888777         123543332211    111111212 222221111111110000


Q ss_pred             HhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH---HHHHHHHHHHHHHH
Q 007159          399 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE---SGLFCVLPWLTMAV  475 (615)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~---~g~~~~~~~i~~~i  475 (615)
                      .+   +.+++++..-...++.++++|.+..+++...+++.....+...+-..+++.+--+.+.   .|-+....++..++
T Consensus       258 ~~---~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii  334 (491)
T PF03219_consen  258 KK---KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTII  334 (491)
T ss_pred             hc---ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHH
Confidence            00   0000011111235677888888888888888888887777776666666654322222   24444555666666


Q ss_pred             HHHHHHHHHHHhhhccc
Q 007159          476 FANMGGWIADTLVSKGL  492 (615)
Q Consensus       476 g~~l~g~l~dr~g~~~~  492 (615)
                      ..++++.+.+|+|.+..
T Consensus       335 ~~~l~~~iir~~GW~~~  351 (491)
T PF03219_consen  335 MMFLSSNIIRRFGWRTA  351 (491)
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            66788888888887643

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.47  E-value=8.3e-06  Score=88.45  Aligned_cols=123  Identities=12%  Similarity=0.060  Sum_probs=85.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHH
Q 007159          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN  319 (615)
Q Consensus       240 s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~  319 (615)
                      ++...+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+..+...+++.-++.|++.+...+...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677788888999999999999999999988775555444433333333322233344555667888777777777


Q ss_pred             HHhhhccc-------ccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCc
Q 007159          320 NMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (615)
Q Consensus       320 ~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw  362 (615)
                      ++++|..+       +++.|..++......-+|..+|+.++|++.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78888775       23335556777788889999999998887765454

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.45  E-value=7e-06  Score=83.73  Aligned_cols=160  Identities=14%  Similarity=0.207  Sum_probs=128.2

Q ss_pred             HHHHHHHhhhhhHHHHhHHHHHhh-cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          213 FSAFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~i~~~-~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      .++.|+...........++.+..+ .|.+..+.....+.+..+.++|.++..++..|+...|.+....++..+.++..++
T Consensus       242 vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         242 VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666667777777666 8889999999999999999999999999999999999998888777777777777


Q ss_pred             hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHH
Q 007159          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (615)
Q Consensus       292 ~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~  371 (615)
                      .+  +. +-+.+-++.|+..+..+|...+...+..+  +....-|..-....+|+++-|.+-|++.+..|-...+.+...
T Consensus       322 ~~--g~-v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pl  396 (422)
T COG0738         322 IG--GV-VALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPL  396 (422)
T ss_pred             hc--Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            76  43 35556678899999999999999999997  344445555566779999999999999999998888876666


Q ss_pred             HHHHHH
Q 007159          372 LGSIWF  377 (615)
Q Consensus       372 ~~~~~~  377 (615)
                      ++.+..
T Consensus       397 lc~lyV  402 (422)
T COG0738         397 LCYLYV  402 (422)
T ss_pred             HHHHHH
Confidence            665555

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.41  E-value=2.4e-05  Score=85.69  Aligned_cols=153  Identities=10%  Similarity=0.050  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA  525 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  525 (615)
                      .++... ..+|-+ ....++.+...++..+..++.|+++|.+|||...+.+         .++..+........++...+
T Consensus        66 ~l~~I~-~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g---------~~l~vvG~Iv~atA~~~~~~  134 (599)
T PF06609_consen   66 ILPYIN-ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIG---------SLLGVVGSIVCATAQNMNTF  134 (599)
T ss_pred             HHHHHH-HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH---------HHHHHhHHHHhhcCCcHHHH
Confidence            344434 446654 5566777888888999999999999999999654432         22222222222233444444


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHH
Q 007159          526 VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN  605 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~  605 (615)
                      ++...+.+...+..........+..+.+.|+...++.....-+...++|.++..+....+|++.|++..++..++++...
T Consensus       135 iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            44443333333443333444566677788988887776665556667888887777778999999999888777766555


Q ss_pred             HHhc
Q 007159          606 LFAT  609 (615)
Q Consensus       606 ~~~~  609 (615)
                      ++.+
T Consensus       215 ~fY~  218 (599)
T PF06609_consen  215 FFYF  218 (599)
T ss_pred             HHhC
Confidence            4433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.26  E-value=0.01  Score=62.59  Aligned_cols=285  Identities=9%  Similarity=0.006  Sum_probs=158.8

Q ss_pred             cccCchhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcC---CCchhhHHHHHHHHH-HHHHHHHhhHHhhhhcCCchH
Q 007159          199 WEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN---WNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPV  274 (615)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g---~s~~~~g~i~s~~~l-~~~l~~~~~G~l~Dr~Grk~~  274 (615)
                      |+..+..+..++.+.+.+++..+..+..    -.+.+.+.   ..+..+.++-+...+ +.++..++.+++.+++.+.++
T Consensus        19 wpi~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~v   94 (509)
T COG3202          19 WPIRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKV   94 (509)
T ss_pred             eeccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHH
Confidence            3333444555666666555555544433    33444443   346677888887777 667788899999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhc-------cC-----------------------hHHHHHHHHHHHhhhcchhh-HHHHHhh
Q 007159          275 LGFGVIWWSVATVLTPVAAR-------IG-----------------------LPFLLIMRAFMGIGEGVAMP-AMNNMLS  323 (615)
Q Consensus       275 l~~~~~l~~i~~~l~~~~~~-------~~-----------------------~~~ll~~r~l~G~~~~~~~~-~~~~~i~  323 (615)
                      +-+....+....+++++.-.       .+                       -|...+..++.-+-.+.... .-.....
T Consensus        95 F~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN  174 (509)
T COG3202          95 FYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777666666666554321       00                       12223333333333333333 5566778


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC----------chHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 007159          324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG----------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE  393 (615)
Q Consensus       324 ~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (615)
                      |..+.+|-.+.++++..+.+++..++..+..++..+..          .+..+.+.+..+.+...+..+..+...+.+..
T Consensus       175 eitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f  254 (509)
T COG3202         175 EITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF  254 (509)
T ss_pred             HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence            88888899999999999999999999888888776321          12223333333333333222222222221111


Q ss_pred             ccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH---HHHHHHHHH
Q 007159          394 LRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE---SGLFCVLPW  470 (615)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~---~g~~~~~~~  470 (615)
                      .....+++   .....+..-...++.+.+.|-++.+.+...+++.+...+....-.-.++.+--..+.   .|.+....+
T Consensus       255 ~~~~~~kk---~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg  331 (509)
T COG3202         255 YLRAKKKK---KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG  331 (509)
T ss_pred             hHHHhccc---ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence            10000000   000000111235677788888888888888887777766654444444333222222   233334444


Q ss_pred             HH-HHHHHHHHHHHHHHhhhc
Q 007159          471 LT-MAVFANMGGWIADTLVSK  490 (615)
Q Consensus       471 i~-~~ig~~l~g~l~dr~g~~  490 (615)
                      +. .++...+++.+.+|.|..
T Consensus       332 vv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         332 VVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHhhhHHHHHHhhHH
Confidence            44 344555677888887765

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.23  E-value=7.5e-06  Score=65.07  Aligned_cols=75  Identities=13%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             HhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh
Q 007159          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (615)
Q Consensus       219 ~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~  293 (615)
                      .+.++..+++.+|.+.++.++|..+.|++.+..++||.+|.+...++.++..+++.+..++++..+..+.+++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            357788899999999999999999999999999999999999999999998888999999999999999999887

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.23  E-value=6.1e-05  Score=68.05  Aligned_cols=109  Identities=11%  Similarity=0.136  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhc
Q 007159          246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW  325 (615)
Q Consensus       246 ~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~  325 (615)
                      .-.++.+....+..++.+.+.+++|.|+.++++.+++.+-.... +.+  +.+.++..-++.|++.+..+++...++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            44556666677778888889999999999999999988665544 333  577889999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhhhHhhhh
Q 007159          326 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (615)
Q Consensus       326 ~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~  357 (615)
                      .+++++++..+++......+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.20  E-value=1.9e-08  Score=108.79  Aligned_cols=162  Identities=13%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             hHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHH----hhhcc----
Q 007159          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP----VAARI----  295 (615)
Q Consensus       224 ~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~----~~~~~----  295 (615)
                      .......+.+.+..+.+..  -+......+...++.++...+.||+|||++++.+.++.+++.+..+    ...+.    
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344456677777777766  1222233344556666777999999999999999888887776654    11111    


Q ss_pred             ChHHHHHHHHHHHhhhc-chhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHH
Q 007159          296 GLPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (615)
Q Consensus       296 ~~~~ll~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~  374 (615)
                      ++. .++.-.+...+.+ ...+....+.+|.+|.+.|.++.++......++.++++.+...+.+..+-...+++.+++.+
T Consensus       348 ~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             ccc-cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            121 2222222222222 33456668889999999999999999999999999999988888877663445555566656


Q ss_pred             HHHHHHHhhhcCCC
Q 007159          375 IWFALWLKKAYSSP  388 (615)
Q Consensus       375 ~~~~~~~~~~~~~~  388 (615)
                      +..++.+...|+.+
T Consensus       427 i~~i~~~~~lpET~  440 (451)
T PF00083_consen  427 IAIIFVYFFLPETK  440 (451)
T ss_pred             HHHhheeEEEeeCC
Confidence            55555555555543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.19  E-value=7.9e-05  Score=76.81  Aligned_cols=154  Identities=14%  Similarity=0.114  Sum_probs=122.3

Q ss_pred             HhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhh-hcCCchHHHHHHHHHHHHHHHHHhhhc-cChHHHHHHH
Q 007159          228 IAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-KFGGKPVLGFGVIWWSVATVLTPVAAR-IGLPFLLIMR  304 (615)
Q Consensus       228 ~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D-r~Grk~~l~~~~~l~~i~~~l~~~~~~-~~~~~ll~~r  304 (615)
                      ..+.++ -+-||++..+..-+.+....+..++-...|++.. |.++++...+++.+..++..+..++.. .+.+.+...-
T Consensus       229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~  308 (403)
T PF03209_consen  229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV  308 (403)
T ss_pred             HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            344444 5678999999999999999999999999999887 677888888888888877766554431 2457788889


Q ss_pred             HHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC----------CCchHHHHHHHHHHH
Q 007159          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK----------FGWPSVFYSFGSLGS  374 (615)
Q Consensus       305 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~----------~gw~~~f~~~~~~~~  374 (615)
                      ++.|++.|.+.....+.+.+...+++.|..+|.+.....++..+|..++|.+.+.          .+|..+|.+-+++.+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887652          235556666555555


Q ss_pred             HHHHHHH
Q 007159          375 IWFALWL  381 (615)
Q Consensus       375 ~~~~~~~  381 (615)
                      +...+..
T Consensus       389 ~a~~ll~  395 (403)
T PF03209_consen  389 AALVLLG  395 (403)
T ss_pred             HHHHHHH
Confidence            4444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.12  E-value=3.2e-05  Score=83.45  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=108.8

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 007159          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS  532 (615)
Q Consensus       453 ~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  532 (615)
                      +..++...+.+...+++.++.+++.+.++.+.||+...+        .+...+++...+.++.....+.+.+++.-++.+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~--------~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llG  145 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK--------GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLG  145 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            446677788999999999999999999999999998432        222222222222222222334445555566666


Q ss_pred             hhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhee------ccCChhHHHHHHHHHHHHHHHHHHH
Q 007159          533 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL------QRGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~------~~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      .+.....+...........++++|..+|+.++...+|.++|++++..+.      ...||++.|++-+++.++..++.++
T Consensus       146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence            6666677777777888899999999999999999999999999998864      3479999999999888887766544


Q ss_pred             H
Q 007159          607 F  607 (615)
Q Consensus       607 ~  607 (615)
                      .
T Consensus       226 ~  226 (495)
T KOG2533|consen  226 F  226 (495)
T ss_pred             E
Confidence            4

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.08  E-value=2.5e-05  Score=61.55  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             HHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          214 SAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      ..+++.+.....+.|+++.+.++.|+++.++|++.++..+...++++++|.++||+++++.++....++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            344555566677888999999999999999999999999999999999999999999988877665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.08  E-value=3.5e-05  Score=85.07  Aligned_cols=142  Identities=17%  Similarity=0.123  Sum_probs=105.4

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHH
Q 007159          454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMACS  532 (615)
Q Consensus       454 ~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~  532 (615)
                      ..+.+.....+..+++.++..+|.++.|.++||+|||+++..+         +++..++-......++. .+.+.-++.+
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~---------~~~~~i~~~~~a~a~~~~~~~~~Rfl~G  182 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVS---------LLLFIIFGILTAFAPNYWMFLIFRFLSG  182 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHH---------HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3566777888888999999999999999999999999655432         22222222222233444 4445555556


Q ss_pred             hhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          533 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .+..+..........+..++++|+.+..+ ......++.+++++++++..  +|+..+++..+..++.++++++.
T Consensus       183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHcc
Confidence            66666666666677888999999999999 88889999999999999987  89999999888888777664443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.06  E-value=0.0011  Score=67.45  Aligned_cols=146  Identities=12%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh
Q 007159          454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ  533 (615)
Q Consensus       454 ~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  533 (615)
                      .+|++..+++.++........+...+.|.++||+|||+.-+         +-++......+...... ...+++.=++++
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl---------~~cily~~scl~k~~~~-~~~L~~GRvlgG  132 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACL---------LFCILYSLSCLTKHSSN-YPVLLLGRVLGG  132 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH---------HHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence            48999999999999999999999999999999999995321         11222222222233333 344443333333


Q ss_pred             hhhhhhhhhhhh------hhhccCcchhhHHHHHHH-HHHHHHHHHHHHHhhheeccC--ChhHHHHHHHHHHHHHHHHH
Q 007159          534 GSDAFSQSGLYS------NHQDIGPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQRG--SWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       534 ~~~~~~~~~~~~------~~~~~~~~~~g~~~gl~~-~~~~lg~~igp~l~G~l~~~~--g~~~~f~~~~~~~l~~~l~~  604 (615)
                      ..........-.      ..+..+++..+..++... ....+-.+++..++-++.+..  |...+|....++++++.++.
T Consensus       133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I  212 (354)
T PF05631_consen  133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI  212 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            333333332221      123345566677666655 334455566666666776654  44778888888888777765


Q ss_pred             HHHhc
Q 007159          605 NLFAT  609 (615)
Q Consensus       605 ~~~~~  609 (615)
                      ....+
T Consensus       213 ~~~W~  217 (354)
T PF05631_consen  213 LKTWP  217 (354)
T ss_pred             Hhccc
Confidence            54433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.03  E-value=6.7e-06  Score=84.88  Aligned_cols=179  Identities=9%  Similarity=-0.020  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHH----HHHHHH-----HHHHHHHHhhHHhhhhcCCchHHHH
Q 007159          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGL----IQSSFF-----WGYLLTQIVGGIWADKFGGKPVLGF  277 (615)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~----i~s~~~-----l~~~l~~~~~G~l~Dr~Grk~~l~~  277 (615)
                      +.++..+...|+.-...+........+.+..|+.+.....    -.+...     .+++.+-.+...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4555556666665555555556666788877776655443    111111     1122244455678999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc--ChHHHHHHHHHHH-hhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHh
Q 007159          278 GVIWWSVATVLTPVAARI--GLPFLLIMRAFMG-IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (615)
Q Consensus       278 ~~~l~~i~~~l~~~~~~~--~~~~ll~~r~l~G-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~  354 (615)
                      +.+++.+..+..+...+.  +-..++++..+.. ++.-........+-+|.+|.+-|+...|+..+.+-+|.++|.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999998887766531  1111222222222 2222333455567789999999999999999999999999999999


Q ss_pred             hhhc-----CCCchHHHHHHHHHHHHHHHHHHhhhc
Q 007159          355 ILIQ-----KFGWPSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       355 ~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ++.+     ..+.+++|++++++.++..++.+...+
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pE  499 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPE  499 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeec
Confidence            9988     788999999999888877776666553

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.02  E-value=0.00014  Score=80.12  Aligned_cols=180  Identities=16%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~  287 (615)
                      .++.+.+..+....+......+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.+
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            334444455555555556666778888888876543 4555556666777777779999999999999999999999988


Q ss_pred             HHHhhhcc-----------ChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhh
Q 007159          288 LTPVAARI-----------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (615)
Q Consensus       288 l~~~~~~~-----------~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l  356 (615)
                      +++.....           .+..+....+..........+....+.+|.+|.+-|+++.++......+...+-......+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76644211           1222222223333333334466667889999999999999988887766665544444445


Q ss_pred             hcCCCchHHHHHHHHHHHHHHH-HHHhhhcCCC
Q 007159          357 IQKFGWPSVFYSFGSLGSIWFA-LWLKKAYSSP  388 (615)
Q Consensus       357 ~~~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~  388 (615)
                      .+..++...|...+.+..+... ..+...++.+
T Consensus       455 ~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  455 TEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            4444445566666655555555 4444444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.01  E-value=0.0002  Score=70.16  Aligned_cols=159  Identities=9%  Similarity=0.049  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA  525 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  525 (615)
                      .+..-+++.+|++..+...+-....++..+| ++.|.+.|+++.+.....+.  ....++........-........+.+
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~--~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGA--VLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHhCccCccchHHH
Confidence            3444566779999999999988888888775 88899999999885443332  11122221111111111111222333


Q ss_pred             HHHHHHHhhhhhh-hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHH
Q 007159          526 VLCMACSQGSDAF-SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW  604 (615)
Q Consensus       526 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~  604 (615)
                      .....+++..... .........+.+ |++||++.|+.-....+++.+-..+...+.+...-...+.......+++++..
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~  178 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAM  178 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh
Confidence            3333333333222 233344445555 67899999999999999999888888777765322333333333333334343


Q ss_pred             HHHh
Q 007159          605 NLFA  608 (615)
Q Consensus       605 ~~~~  608 (615)
                      .+++
T Consensus       179 ~~vr  182 (250)
T PF06813_consen  179 FFVR  182 (250)
T ss_pred             hhee
Confidence            4433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.95  E-value=0.0058  Score=67.41  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=119.3

Q ss_pred             HHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-CCchHHHHHHHHHHHHHHHHHhhhcc----------
Q 007159          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARI----------  295 (615)
Q Consensus       227 ~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-Grk~~l~~~~~l~~i~~~l~~~~~~~----------  295 (615)
                      ...+..+..+++.+...+.-....+.-...+.++.++.++|-| ||-+++.++.++..++.++..+....          
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            4556677888888888888888888888999999999999975 88899999998888886554432210          


Q ss_pred             ----------C---hHHHHHHHHHHHhhhcchhhHHHHHhhhccc---ccc-h--hhHHHHHHHHHHHHHHHHhhhHhhh
Q 007159          296 ----------G---LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP---VSE-R--SRSLAFVYSGMYLGSVTGLAVSPIL  356 (615)
Q Consensus       296 ----------~---~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~-r--~~~~~~~~~~~~lG~~ig~~l~~~l  356 (615)
                                +   ...+....-+..+|.|..-+...++-+|-++   +++ +  ...+.++....++|..++..+..++
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi  217 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI  217 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence                      0   1245666677788999999999999999887   222 2  3667888889999999999888888


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHHH
Q 007159          357 IQKFGWPSVFYSFGSLGSIWFALWL  381 (615)
Q Consensus       357 ~~~~gw~~~f~~~~~~~~~~~~~~~  381 (615)
                      -++.+|.+.|.+..+..++..++++
T Consensus       218 q~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  218 QDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hhcccceeeccHHHHHHHHHHHHHH
Confidence            7889999999877766655555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.90  E-value=0.0028  Score=66.83  Aligned_cols=365  Identities=12%  Similarity=0.054  Sum_probs=176.7

Q ss_pred             HHHHHHHHHhhhhhHHHHhHHHHHhh--cCCCchhhHHHHHHHHHHHHHHHHhhHHhhh-----hcCCchHHHH-HHHHH
Q 007159          211 LCFSAFLLCNMDRVNMSIAILPMSKE--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-----KFGGKPVLGF-GVIWW  282 (615)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~D-----r~Grk~~l~~-~~~l~  282 (615)
                      ++.+.+++.+.-.......+|.+.++  .+.|.++.|... +....+- .-++|.++.|     |+||||..++ ...+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            44555667766655544578888887  677887776532 2222221 2344555555     7899886554 33333


Q ss_pred             HHHHHHHHhhh---------------c-------cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHH
Q 007159          283 SVATVLTPVAA---------------R-------IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS  340 (615)
Q Consensus       283 ~i~~~l~~~~~---------------~-------~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  340 (615)
                      ++..+..+...               +       .+...+....++.=+..+.-..+...+.-.+..+++++.+..-...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33333322211               0       0011122333333444455556667777777778888877777777


Q ss_pred             HHHHHHHHHhhhHhhhhc-----C--------CCc---hHHHHHHHHHHHHHHHHHHhhhcCCCCCCc--cccH----HH
Q 007159          341 GMYLGSVTGLAVSPILIQ-----K--------FGW---PSVFYSFGSLGSIWFALWLKKAYSSPKEDP--ELRA----EE  398 (615)
Q Consensus       341 ~~~lG~~ig~~l~~~l~~-----~--------~gw---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~  398 (615)
                      +.++|..++-.+.-.+-+     .        .|.   ..-..+.+.+.++..++..+..++.+..+.  +.+.    +.
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            777777776555433321     0        111   111123344444444444444444332111  0000    00


Q ss_pred             -Hhhh---hcCCc--cccc-----cccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Q 007159          399 -KRHI---LGGSI--SKEA-----VSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCV  467 (615)
Q Consensus       399 -~~~~---~~~~~--~~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~  467 (615)
                       .++.   .++..  ..+.     ..-..+..+++-|.+..+.+..+..-.++..-......-+.+ .|++.+..+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence             0000   00000  0000     001223345667777777777777777766666666666666 6999999887655


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc-c-------------------HHH----HHHHHHHH-HHHHHHHH--HHHhccc-
Q 007159          468 LPWLTMAVFANMGGWIADTLVSKGL-S-------------------ITA----VRKIMQSI-GFLGPAFF--LTQLSHV-  519 (615)
Q Consensus       468 ~~~i~~~ig~~l~g~l~dr~g~~~~-~-------------------~~~----~~~~~~~~-~~~~~~~~--l~~~~~~-  519 (615)
                      +..-.    .++.|+++.|+.+.+. +                   +.+    ++..+... +=+..++.  .....++ 
T Consensus       321 i~~P~----qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~  396 (544)
T PF13000_consen  321 IDFPF----QIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPS  396 (544)
T ss_pred             HhhhH----HHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCC
Confidence            44333    4444444444432211 0                   000    01111111 10111110  1111111 


Q ss_pred             --cch--H--HHHHHHHHHhhhhhhhhhhhhh-hhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec
Q 007159          520 --RTP--A--MAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ  582 (615)
Q Consensus       520 --~~~--~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~  582 (615)
                        ...  +  ++++.-++..+.......+..+ -.+..+|..-|+.+.+.|++.++|+---..+.=+++|
T Consensus       397 ~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  397 DGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence              111  1  1222222233333333333333 3445678999999999999999999877766656655

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.76  E-value=0.0037  Score=64.77  Aligned_cols=116  Identities=12%  Similarity=0.016  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHH----HHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWG----YLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~----~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      +.+.+++..+-....+..+..+.+.+.+.+-.... .-.....+.+.    ..+....-..+.-|.. .++.....+...
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~-~~~~~~l~~~~i   96 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLR-TRVGYLLSLIAI   96 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            33444444444456666666777777766643333 22233333333    3334444444444421 111111111111


Q ss_pred             HHHHHHHhhh-------ccChHHHHHHHHHHHhhhcchhhHHHHHhhhc
Q 007159          284 VATVLTPVAA-------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW  325 (615)
Q Consensus       284 i~~~l~~~~~-------~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~  325 (615)
                      +..+.+.++.       ...+...++.-++.+++.+..........++.
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~  145 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF  145 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC
Confidence            1111122221       12345566777788888888888888877765

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.75  E-value=0.00079  Score=75.52  Aligned_cols=163  Identities=13%  Similarity=0.060  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccHHHHHHHHHHHHHHHHHHHHHHhc-
Q 007159          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFLTQLS-  517 (615)
Q Consensus       440 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  517 (615)
                      ++++...+..|+.+.+|++...+..++..+....-+..+++|+++|++ |+++.+..+.  ++..++.     .++... 
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~--ii~~lG~-----~llai~a   75 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLS--IVYVVGH-----ALLSFGA   75 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHH-----HHHHhcc
Confidence            455667777888888999999988888888888888889999999986 4443322111  1111111     111111 


Q ss_pred             ccc------chHHHHHHHHHHhhhhhhhhhhhhhhhhccCc---chhhHHHHHHHHHHHHHHHHHHHHhhheecc-----
Q 007159          518 HVR------TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYILQR-----  583 (615)
Q Consensus       518 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~-----  583 (615)
                      .+.      ....++.+.++.++.+++-+.......+...+   +.+-..+.++....++|+.+++++.+++.+.     
T Consensus        76 ~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg  155 (654)
T TIGR00926        76 IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG  155 (654)
T ss_pred             CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            110      11122333333333333333333333333333   3477888899999999999999999998743     


Q ss_pred             --CChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          584 --GSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       584 --~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                        .+|..+|.+.+++++++++++...++
T Consensus       156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       156 CQDCYPLAFGVPAILMILALIVFMAGSK  183 (654)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence              26999999999999988887765543

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.69  E-value=0.00031  Score=55.32  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007159          429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~  493 (615)
                      +-...++...+...+..++|.|+++ .|+++.++|.+.++..+...++.+++|+++||.++++..
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            4455677777888899999999998 799999999999999999999999999999999998643

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.63  E-value=0.0093  Score=63.85  Aligned_cols=98  Identities=13%  Similarity=0.015  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH-Hhh----hc-cChHHHHHHHHHHHhhhcchhhHHHHHhh
Q 007159          250 SFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT-PVA----AR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLS  323 (615)
Q Consensus       250 ~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~-~~~----~~-~~~~~ll~~r~l~G~~~~~~~~~~~~~i~  323 (615)
                      ...+...+..+..-.+..|+..|.=+..++++..+..++. .+.    +. ..++..++.-++.|++.+.......++.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            3444444555555555566664333333433222222221 111    11 13556677778889999888888888877


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhhh
Q 007159          324 KWIPVSERSRSLAFVYSGMYLGSVTGLAV  352 (615)
Q Consensus       324 ~~~~~~~r~~~~~~~~~~~~lG~~ig~~l  352 (615)
                      . +|++    .+..+..+.+++++++.++
T Consensus       133 ~-fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       133 V-FPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             c-CCHH----HHHHHHhcchhHHHHHHHH
Confidence            4 4432    4455555555655555443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.43  E-value=0.001  Score=71.35  Aligned_cols=124  Identities=15%  Similarity=0.220  Sum_probs=106.9

Q ss_pred             HHHhhcCCCchhhHHHHHHHHHHHHHHHHhhH-HhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhh
Q 007159          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGG-IWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG  310 (615)
Q Consensus       232 ~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G-~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~  310 (615)
                      .+...++++..+.+...+.......+++++.. .+...+|-|+++..|++...+..+..+++.  +.|++....++.++.
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVALA  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHhh
Confidence            35667899999999999999999999888887 566778999999999999999999999998  566677777665555


Q ss_pred             hcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc
Q 007159          311 EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (615)
Q Consensus       311 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~  358 (615)
                       ....|...+.++.+.+++++|+++++......+..+++|.+-+.+..
T Consensus       345 -~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 -GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence             66779999999999999999999999999999999999999887654

>PRK03612 spermidine synthase; Provisional

Probab=97.43  E-value=0.0097  Score=65.23  Aligned_cols=168  Identities=13%  Similarity=0.050  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Q 007159          432 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF  511 (615)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  511 (615)
                      ..++..++...+...+.-.+...+|-+....+.+.+.+.++..+|+.+++++.++..++. ....  ..+..++.+...+
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e--~~i~l~~~~~~~l   98 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVE--LLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHH--HHHHHHHHHHHHH
Confidence            334444444455555555566667888888999999999999999988887764432221 1100  0010111111111


Q ss_pred             HHHHhccccch-HHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec-cCChhHH
Q 007159          512 FLTQLSHVRTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDV  589 (615)
Q Consensus       512 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~-~~g~~~~  589 (615)
                      ........... .......+......+...+....+......+..|...|-...+..+|+.+|+++.|++.- ..|....
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t  178 (521)
T PRK03612         99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRT  178 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHH
Confidence            11111111111 111111222223333333433333333333456778888999999999999999998765 5776655


Q ss_pred             HHHHHHHHHHHHH
Q 007159          590 FKVAVVLYIIGTL  602 (615)
Q Consensus       590 f~~~~~~~l~~~l  602 (615)
                      .++.+++.+++.+
T Consensus       179 ~~~~a~l~~~~a~  191 (521)
T PRK03612        179 AALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.42  E-value=0.001  Score=70.00  Aligned_cols=111  Identities=20%  Similarity=0.290  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcc-------ChHHHHHHHHHHHhhhcchhhHHHHHhhhccccc---chhhHHHHHHHHH
Q 007159          273 PVLGFGVIWWSVATVLTPVAARI-------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS---ERSRSLAFVYSGM  342 (615)
Q Consensus       273 ~~l~~~~~l~~i~~~l~~~~~~~-------~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  342 (615)
                      +.++++.+++.+|.+++.++...       +.+.++++.++.++|.|..-|...++.+|-++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888889988885544321       1256888899999999999999999999999765   4567788899999


Q ss_pred             HHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Q 007159          343 YLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (615)
Q Consensus       343 ~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  383 (615)
                      ++|..+++.+.+++.++.||.+.|.+.++..++..+.++..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999998887777666655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.26  E-value=0.0043  Score=60.08  Aligned_cols=239  Identities=15%  Similarity=0.099  Sum_probs=109.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhHhhhhc-------CCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhh
Q 007159          329 SERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH  401 (615)
Q Consensus       329 ~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (615)
                      ++|+....+...+..+|.++..+..  +..       .-.|++++.+.+++.++.+++....-.+-....+. +++++.+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF--~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~~   78 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPF--LISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKEN   78 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccccccc
Confidence            4555555555666777776654332  222       23599999888888777666665553332111111 0110000


Q ss_pred             hhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-------------hHHHHHHHH
Q 007159          402 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL-------------TESGLFCVL  468 (615)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~-------------~~~g~~~~~  468 (615)
                             ..........+++|++..|...+.+......  .++.+.+.+.......++             ........+
T Consensus        79 -------~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~--~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~  149 (267)
T PF07672_consen   79 -------STLSKKPSYKSILKEKETWKWILIYGIWLVV--VVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQIL  149 (267)
T ss_pred             -------ccccccchHHHHHccchHHHHHHHHHHHhee--EEEeccchhHhHhhhcCcccccccccccccchhhHHHHHH
Confidence                   0001113567788888888776654432211  111111222221111111             112233334


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH-Hhccccc--h-HHHHHHHHHHhhhhhhhhhhhh
Q 007159          469 PWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT-QLSHVRT--P-AMAVLCMACSQGSDAFSQSGLY  544 (615)
Q Consensus       469 ~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  544 (615)
                      +..+..+|.+..|.+.+..-+||..+...  +.+.+.+.+.+..+. .....+.  . .+.+..++.+.+..+......+
T Consensus       150 fv~g~~~G~~~ig~~nkt~~kRk~fi~~~--~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~  227 (267)
T PF07672_consen  150 FVAGYFLGPFTIGLWNKTNYKRKPFIHFI--ISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILN  227 (267)
T ss_pred             HHHHHhhhceeeccchhhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence            44445566566666665544444433221  111111111111111 1111121  1 2223333333344344433333


Q ss_pred             hhh--hccCcchhhHHHHHHHHHHHHHHHHHHHHhhhee
Q 007159          545 SNH--QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL  581 (615)
Q Consensus       545 ~~~--~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~  581 (615)
                      .-.  .+..|++.|...|+.-.++++.-.+.-.+...+.
T Consensus       228 lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~  266 (267)
T PF07672_consen  228 LPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVIA  266 (267)
T ss_pred             ChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            322  2356788888888887777777777666665544

>PRK03612 spermidine synthase; Provisional

Probab=97.22  E-value=0.017  Score=63.41  Aligned_cols=156  Identities=14%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             HhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH---HHHHHHHhhhc
Q 007159          219 CNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS---VATVLTPVAAR  294 (615)
Q Consensus       219 ~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~---i~~~l~~~~~~  294 (615)
                      .++....+-..... +..-+|.+....+.+.+++.++..+|..+++++.++.-++.. .+-+.+..   ++..+......
T Consensus        26 sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~  104 (521)
T PRK03612         26 CAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFA  104 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334433333 445678888999999999999999999998887643222221 11111111   11111111110


Q ss_pred             c--C-hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc-CCCchHHHHHHH
Q 007159          295 I--G-LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFG  370 (615)
Q Consensus       295 ~--~-~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~-~~gw~~~f~~~~  370 (615)
                      .  . ...++...++.++..|+..|....+..+.. .++-+...|.......+|.++|.++.+++.- .+|-....++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a  183 (521)
T PRK03612        105 FQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG  183 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            0  1 112334445667888888888777766543 2345677888888999999999999887654 677554544444


Q ss_pred             HHHHHH
Q 007159          371 SLGSIW  376 (615)
Q Consensus       371 ~~~~~~  376 (615)
                      .+.+++
T Consensus       184 ~l~~~~  189 (521)
T PRK03612        184 SLNLLA  189 (521)
T ss_pred             HHHHHH
Confidence            444333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.20  E-value=0.005  Score=65.66  Aligned_cols=181  Identities=15%  Similarity=0.052  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS-KGLSITAVRKIMQ  502 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~-~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~-~~~~~~~~~~~~~  502 (615)
                      .++...+..++...-...+.+-.-.|+++ ..+-+....|++.+...++.++.+++.|++..|.+. |+.++.+.  ++.
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~--ii~  112 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF--LIA  112 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH--HHH
Confidence            34555555555555555555545556655 246677778999999999999999999999999885 44443221  222


Q ss_pred             HHHHHHHHHHHHHhcccc-chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHh----
Q 007159          503 SIGFLGPAFFLTQLSHVR-TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT----  577 (615)
Q Consensus       503 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~----  577 (615)
                      .++-++   .+.+...++ ..++++.+-++.+.+.+.....-........+++|.++++..+....+|..+||.+.    
T Consensus       113 ~~g~ll---Y~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  113 IIGNLL---YLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHH---HHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            222222   211111222 333333333333333222222222233333456677777776666666666666553    


Q ss_pred             hheecc---------CChhHHHHHHHHHHHHHHHHHHHHhcC
Q 007159          578 GYILQR---------GSWDDVFKVAVVLYIIGTLVWNLFATG  610 (615)
Q Consensus       578 G~l~~~---------~g~~~~f~~~~~~~l~~~l~~~~~~~~  610 (615)
                      |...+.         .-|..+-++++++.++..++.....++
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            333221         236777888888888887776665443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.14  E-value=0.01  Score=63.71  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccHHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 007159          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV----SKGLSITAVRKIMQSIGFLGPAFFLTQLSH-VR  520 (615)
Q Consensus       446 ~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  520 (615)
                      -...|+++.+|+++.+...+..+..+-.. ..++.|.++|-+.    |||..+.    +...++. +....+..... ..
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~----i~~~~~~-~~~~~~~~~~~~~~   84 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMI----IGWLLGA-VSALVLALLPASES   84 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHH----HHHHHHH-HHHHHHHhcccccc
Confidence            34557788899999998887766655544 4567899999874    3332211    1111111 11111122221 12


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhh-hhh--ccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHH
Q 007159          521 TPAMAVLCMACSQGSDAFSQSGLYS-NHQ--DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY  597 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~  597 (615)
                      .......++++......+.-..... ..+  .-.|+.+|...+....+..+|..++..+.|.+.+..+++..|.+.+++.
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~  164 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP  164 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence            2222222322222222222222221 111  2234448999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHhc
Q 007159          598 IIGTLVWNLFAT  609 (615)
Q Consensus       598 l~~~l~~~~~~~  609 (615)
                      ++..+..+.+.+
T Consensus       165 ~l~~~~~~~~~~  176 (433)
T PF03092_consen  165 LLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHhhh
Confidence            777655554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.97  E-value=0.015  Score=60.82  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=75.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH--HHHHHH---HHhhhccChHHHHHHHHHHHhhhcchh
Q 007159          241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW--SVATVL---TPVAARIGLPFLLIMRAFMGIGEGVAM  315 (615)
Q Consensus       241 ~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~--~i~~~l---~~~~~~~~~~~ll~~r~l~G~~~~~~~  315 (615)
                      ..++-+...+|.+|.+++.--.. +. |+  |++.+.+.+-.  .+..++   .-+.+  +.|.+++..+..|+..|..+
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fip--si~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIP--SIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhhhHHH
Confidence            44566666777776666543321 11 23  44443333222  222222   22333  56778888999999999999


Q ss_pred             hHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhh
Q 007159          316 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (615)
Q Consensus       316 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l  356 (615)
                      ......+.+-.++++|..++|....+-++|..++.+++-.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.95  E-value=0.018  Score=60.14  Aligned_cols=130  Identities=12%  Similarity=0.038  Sum_probs=76.0

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 007159          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC  528 (615)
Q Consensus       449 ~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  528 (615)
                      -|.+..|| +...+-+...++.+..+...+.+-|+.||+|-|.....+.  ...+++..+=.+...-+ ..+..+.  ..
T Consensus        69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt--~ln~iGa~Ir~iss~p~-v~~~f~~--~l  142 (480)
T KOG2563|consen   69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT--VLNGIGAWIRLISSLPF-VPPLFRR--PL  142 (480)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH--HHHHHHHHHhhhccCcc-ccccchh--hh
Confidence            35566677 6677778888888999999999999999999884332211  11122211111111000 0122221  11


Q ss_pred             HHHHhhhhhhhhhh-----hhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccC
Q 007159          529 MACSQGSDAFSQSG-----LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG  584 (615)
Q Consensus       529 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~  584 (615)
                      ...+....+...+.     .-.....+++++|+++..+..+...+|.++|.++...+....
T Consensus       143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            11111111121111     122345688999999999998888999999988888887643

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.91  E-value=0.0059  Score=60.17  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhh
Q 007159          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS  323 (615)
Q Consensus       244 ~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~  323 (615)
                      .|.+.-.-.+...+..+.+..+.||+..-.=+.+..++.+.+.++.+++.  +.++-+++-.+..++.|.......++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            46666667778888888888889987544444455666777777788887  6777777777888887776665555544


Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC--CCchHHHHHHHHHHHHHHHHHHhhhcC
Q 007159          324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGSIWFALWLKKAYS  386 (615)
Q Consensus       324 ~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~  386 (615)
                      .+ ++    ...+-++.+.+.++++|..--..+.+.  +..|.+.++...+-++.....++..+.
T Consensus       142 ~Y-~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  142 RY-PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             cC-CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            33 22    245566677777777777666666663  446777776666655544444444433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.76  E-value=0.2  Score=53.28  Aligned_cols=177  Identities=12%  Similarity=0.154  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI  504 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~  504 (615)
                      ..+.+.+..++..++.-......|.++.+.+.-+..-.+.+-..-.+..++.+...|.+.||..|.+......  ...-+
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l--~~Qn~   80 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL--VVQNL   80 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH--HHHHH
Confidence            4567778888888998888899999999877666666666666666777777888899999998887655433  22222


Q ss_pred             HHHHHHHHHHH-hccccc----hHHHHHHHHH---Hhhhhhhhhhhhh-hhhh-------ccCcchhhHHHHHHHHHHHH
Q 007159          505 GFLGPAFFLTQ-LSHVRT----PAMAVLCMAC---SQGSDAFSQSGLY-SNHQ-------DIGPRYAGVLLGLSNTAGVL  568 (615)
Q Consensus       505 ~~~~~~~~l~~-~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~-~~~~-------~~~~~~~g~~~gl~~~~~~l  568 (615)
                      +.++....+.. +.....    .+....++..   .+...-....... .+-+       .-.++......+.+.-+-.+
T Consensus        81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            22222222221 111111    1112111111   1111111111111 1111       12345667777777777788


Q ss_pred             HHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHH
Q 007159          569 AGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       569 g~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~  603 (615)
                      .-.++|++.|.+.+..++.....+.++..+++..+
T Consensus       161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888887777765

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.64  E-value=0.091  Score=47.55  Aligned_cols=107  Identities=13%  Similarity=0.031  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhh
Q 007159          466 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS  545 (615)
Q Consensus       466 ~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (615)
                      .++......+..++.+.+.+++|.|.         .+.++.+...+.......+..+.++....+.+.+...++..-...
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~---------sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKW---------SMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence            44555556777788889999999883         333444444444444444445555555555555555554444444


Q ss_pred             hhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhee
Q 007159          546 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL  581 (615)
Q Consensus       546 ~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~  581 (615)
                      +.+...++.+++..|+...+...+..+|.++.-.+.
T Consensus       114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556788899999998888888888877655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.50  E-value=0.034  Score=59.56  Aligned_cols=109  Identities=13%  Similarity=0.031  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhcCCc-hHHHHHHHHHHHHHHHHHhhhc----------cChHHHHHHHHHHHhhhcc
Q 007159          245 GLIQSSFFWGYLLTQIVGGIWADKFGGK-PVLGFGVIWWSVATVLTPVAAR----------IGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       245 g~i~s~~~l~~~l~~~~~G~l~Dr~Grk-~~l~~~~~l~~i~~~l~~~~~~----------~~~~~ll~~r~l~G~~~~~  313 (615)
                      -+++.++.++-.+|..+..+.. .-++| +.+.+..++-.+..-++.++..          .+-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4566677777777776544321 11222 1333333333333322222210          1445677778999999999


Q ss_pred             hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHh
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~  354 (615)
                      .....+.+..+..+++||..+-.+...+..+|..+|..++-
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888888888888877644

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.29  E-value=0.37  Score=51.96  Aligned_cols=148  Identities=14%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccccHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKF-----NLTESGLFCVLPWLTMAVF-ANMGGWIADTLVSKGLSITAVR  498 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~-----s~~~~g~~~~~~~i~~~ig-~~l~g~l~dr~g~~~~~~~~~~  498 (615)
                      +++.+.+..|+..+.++..-     -++|.+..     +.+...++.+...+.+.+. .++.+++++|++++++......
T Consensus         8 k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            45555555555544443322     23455444     4466777776665655555 7788999999999976653322


Q ss_pred             HHHHHHHHHHHHHHHHHhccccc--------------------------hHHHHHHHHHHhhhhhhhhh-hhhh-hhhcc
Q 007159          499 KIMQSIGFLGPAFFLTQLSHVRT--------------------------PAMAVLCMACSQGSDAFSQS-GLYS-NHQDI  550 (615)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~  550 (615)
                      .......    .+.....+..+.                          .|......+..-..+....+ .... ..+..
T Consensus        83 ~F~~~f~----lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        83 PFLGFFA----LFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHH----HHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1111111    111111111111                          11111222222222222222 2223 44455


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhhee
Q 007159          551 GPRYAGVLLGLSNTAGVLAGVFGTAATGYIL  581 (615)
Q Consensus       551 ~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~  581 (615)
                      .+++..+..++.....++|..+++.+..++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6699999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.19  E-value=0.22  Score=52.29  Aligned_cols=160  Identities=9%  Similarity=-0.015  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHH-hCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007159          443 LLTWMPTYYNQV-LKFNLTESGLF-CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (615)
Q Consensus       443 ~~~~~p~~~~~~-~g~s~~~~g~~-~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (615)
                      ...++..|+.+. .|++..+..-- +-...-...+..+....+.|.++.|++++..      .++.++.  ..+ +.+..
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~------~~~~i~t--~~l-ll~~~   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQ------ALSYIIT--WLL-LLFGT   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHHHHH--HHH-HHHHC
Confidence            345778888876 89998887533 3233333444555677899999888543321      1221111  111 22223


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec--cCChhHHHHHHHHHHH
Q 007159          521 TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ--RGSWDDVFKVAVVLYI  598 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~--~~g~~~~f~~~~~~~l  598 (615)
                      ....+-+.-++.+...+.-......+-..+++++.-++.+....+..+|.+++..++-.+..  ..+|.....+..+...
T Consensus        93 sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~  172 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS  172 (412)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            33333333333333333333333334556678888888888888888888888887776665  3677777777777667


Q ss_pred             HHHHHHHHHhcCC
Q 007159          599 IGTLVWNLFATGE  611 (615)
Q Consensus       599 ~~~l~~~~~~~~~  611 (615)
                      +++++.+++.+.+
T Consensus       173 ~a~~~~~fLP~~~  185 (412)
T PF01770_consen  173 LALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHcCCCC
Confidence            7776666665544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.19  Score=53.61  Aligned_cols=105  Identities=16%  Similarity=0.230  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHhhHHhhh---hcCCchHHHHHHHHHHHHHHHHHhhhc----------------cChHHHHHHHHHHHhh
Q 007159          250 SFFWGYLLTQIVGGIWAD---KFGGKPVLGFGVIWWSVATVLTPVAAR----------------IGLPFLLIMRAFMGIG  310 (615)
Q Consensus       250 ~~~l~~~l~~~~~G~l~D---r~Grk~~l~~~~~l~~i~~~l~~~~~~----------------~~~~~ll~~r~l~G~~  310 (615)
                      ...++..++..+.+.+.+   ++|+++.+.++.++..++.++.-+...                .+....++..++.|++
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~  366 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG  366 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence            334444455555666665   478999999999888888776554321                1245778888999999


Q ss_pred             hcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhh
Q 007159          311 EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI  355 (615)
Q Consensus       311 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~  355 (615)
                      .+........++.+.. +++|.++.++...-..++..++-...+.
T Consensus       367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999 7889999998888777777765555443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.05  E-value=1.1  Score=45.05  Aligned_cols=72  Identities=10%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcc
Q 007159          252 FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI  326 (615)
Q Consensus       252 ~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~  326 (615)
                      .+.-+...++.+.+..++|-|+++.++...+......- +-+  .+..++-...+.|++.+..+..--+++++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence            34445556666688999999999988887776543321 112  4667888889999999998877777666554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.94  E-value=0.53  Score=46.52  Aligned_cols=152  Identities=18%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Q 007159          439 GTFILLTWMPTYYNQVLKFNL--TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL  516 (615)
Q Consensus       439 ~~~~~~~~~p~~~~~~~g~s~--~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  516 (615)
                      .........+.+..+ .+.+.  ...++......+...++.++.|++.||.|+|+....+.       ............
T Consensus        17 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-------~~~~~~~~~~~~   88 (338)
T COG0477          17 DLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGL-------LLFLLGTLLLAL   88 (338)
T ss_pred             hcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHH-------HHHHHHHHHHHh
Confidence            333444455666555 34444  46788888888888888899999999998774332211       101111111111


Q ss_pred             ccccchHHHHHHHH-HHhhhhhhhhhhhhhhhhccCc-chhhHHHHHHHH-HHHHHHHHHHHHhhheecc--CChhHHHH
Q 007159          517 SHVRTPAMAVLCMA-CSQGSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNT-AGVLAGVFGTAATGYILQR--GSWDDVFK  591 (615)
Q Consensus       517 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~gl~~~-~~~lg~~igp~l~G~l~~~--~g~~~~f~  591 (615)
                      .........+.... .+.+.....+.......+..++ +.++...+.... ...+|..++|.+.+.+...  .+|+..|.
T Consensus        89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T COG0477          89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL  168 (338)
T ss_pred             CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            11112233332222 2333332333333333444443 578888888888 5778888888777777654  56777555


Q ss_pred             HHHHHHH
Q 007159          592 VAVVLYI  598 (615)
Q Consensus       592 ~~~~~~l  598 (615)
                      .......
T Consensus       169 ~~~~~~~  175 (338)
T COG0477         169 LAALLGL  175 (338)
T ss_pred             HHHHHHH
Confidence            5554443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.01  E-value=0.47  Score=48.45  Aligned_cols=166  Identities=10%  Similarity=0.098  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhcCC-CchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH---
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNW-NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA---  285 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~-s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~---  285 (615)
                      +.+.+++++...+.-++...+..++.+++- |...+..-..+-.....+..++.|.+.|+..|+|++...+++-=++   
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v  109 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV  109 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence            344556666666666777777777777654 3334444444555566777888899999999999887766543322   


Q ss_pred             ---HHHHHhhhc----cChHHHHHHHHHHHhhhcchh--hHHHHH--hhhcc----cccchhhH---HHHHHHHHHHHHH
Q 007159          286 ---TVLTPVAAR----IGLPFLLIMRAFMGIGEGVAM--PAMNNM--LSKWI----PVSERSRS---LAFVYSGMYLGSV  347 (615)
Q Consensus       286 ---~~l~~~~~~----~~~~~ll~~r~l~G~~~~~~~--~~~~~~--i~~~~----~~~~r~~~---~~~~~~~~~lG~~  347 (615)
                         .++..+...    .+.+++..+.++.-...+...  ..+.++  --||.    ..+.+...   ++.....-..-..
T Consensus       110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~  189 (503)
T KOG2601|consen  110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL  189 (503)
T ss_pred             HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence               233333332    134445544444333222211  111111  12332    22333333   3555556666778


Q ss_pred             HHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          348 TGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       348 ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      +.|++.|.++...+-|..-..+++..++
T Consensus       190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  190 LAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhhcccceeechhhhhhhhHHHHHH
Confidence            8999999998887777654444444333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.52  E-value=0.35  Score=50.76  Aligned_cols=87  Identities=9%  Similarity=0.045  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhccCc---chhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          523 AMAVLCMACSQGSDAFSQSGLYSNHQDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      .+.+.+.++..+.++.=+.......+..++   +++.+.+.++....++|..+++.+.+++-+..||...|.+.++..++
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~  114 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL  114 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence            344445555555555555554445555444   46788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 007159          600 GTLVWNLFAT  609 (615)
Q Consensus       600 ~~l~~~~~~~  609 (615)
                      +.+.++.-++
T Consensus       115 ~~~~f~~~~~  124 (372)
T PF00854_consen  115 ALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHCCCC
T ss_pred             HHHHHHhCCc
Confidence            8887766543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.20  E-value=0.012  Score=64.90  Aligned_cols=170  Identities=11%  Similarity=0.088  Sum_probs=1.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhc
Q 007159          438 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS  517 (615)
Q Consensus       438 ~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  517 (615)
                      ....++....-.-++++++++..++|++.+..-++.++..++..++.+|..|.|.+-.+  .+++.++.++.++=-+...
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g--~~~~~~g~~l~~lPhf~~~   93 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIG--ALLMGLGSLLFALPHFLSG   93 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeec--HHHHHHHHHHHhccHhhcC
Confidence            33444444444456777999999999999999999999999999998886655543322  2333333333221111100


Q ss_pred             c---------------------------------------cc-----chHHHHHHHHHHhhhhhhhhhhhhhhhhccCcc
Q 007159          518 H---------------------------------------VR-----TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR  553 (615)
Q Consensus       518 ~---------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (615)
                      .                                       ..     ...+++.-++.+.+.....+.....+-+.++++
T Consensus        94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~  173 (539)
T PF03137_consen   94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK  173 (539)
T ss_dssp             ----------------------------------------------------------SSS-------------------
T ss_pred             CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence            0                                       00     011112223334444444444444455667788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhheecc----------------------CChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          554 YAGVLLGLSNTAGVLAGVFGTAATGYILQR----------------------GSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       554 ~~g~~~gl~~~~~~lg~~igp~l~G~l~~~----------------------~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      +.+...|+..++..+|-++|-.++|.+...                      +-|...|++.+++.++..+.++.+.|
T Consensus       174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk  251 (539)
T PF03137_consen  174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK  251 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            899999999999999999998888877742                      13677777778777777766665544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.89  E-value=0.02  Score=58.59  Aligned_cols=108  Identities=13%  Similarity=0.068  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHHH---HHHHhhhc--------cChHHHHHHHHHHHhhhcc
Q 007159          246 LIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVAT---VLTPVAAR--------IGLPFLLIMRAFMGIGEGV  313 (615)
Q Consensus       246 ~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~~---~l~~~~~~--------~~~~~ll~~r~l~G~~~~~  313 (615)
                      .++.+|.++-.+|..+.++..-+ ..+|+++ +..++-.+..   +++...+.        .+.++.++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            35667888888888776653211 1244443 3333333222   22211100        1335667778899999999


Q ss_pred             hhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHh
Q 007159          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (615)
Q Consensus       314 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~  354 (615)
                      .....+.+..+..++++|..+-.+......+|..+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888877777777777777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.61  E-value=0.22  Score=55.87  Aligned_cols=168  Identities=13%  Similarity=0.129  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH------
Q 007159          442 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ------  515 (615)
Q Consensus       442 ~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~------  515 (615)
                      +++...-.-+++.++++..+.|++...+-++..+...+..++..|..|.+.+-.+.  +.+.++.++.++--+.      
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~--~~m~lgsll~alPHf~~~~y~~  191 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGL--VLMGLGSLLFALPHFFSGPYEY  191 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeech--hHHHHHHHHHhChHHhcCcchh
Confidence            44444445567789999999999999999999988888899988887776654443  3333333332211000      


Q ss_pred             ---h-------c---------------------------cccc-hH--HHHHHHHHHhhhhhhhhhhhhhhhhccCcchh
Q 007159          516 ---L-------S---------------------------HVRT-PA--MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA  555 (615)
Q Consensus       516 ---~-------~---------------------------~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (615)
                         .       .                           ..+. ++  +++..++.|.+...+.+.....+-+.+.+++.
T Consensus       192 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~S  271 (735)
T KOG3626|consen  192 ELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNS  271 (735)
T ss_pred             hhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCC
Confidence               0       0                           0000 11  22222333334333333333334444566888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhheecc-------------------CChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007159          556 GVLLGLSNTAGVLAGVFGTAATGYILQR-------------------GSWDDVFKVAVVLYIIGTLVWNLFATGE  611 (615)
Q Consensus       556 g~~~gl~~~~~~lg~~igp~l~G~l~~~-------------------~g~~~~f~~~~~~~l~~~l~~~~~~~~~  611 (615)
                      ...+|+..++..+|-++|-++++++...                   +-|...|++++.+.++..+.++++.++.
T Consensus       272 plYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  272 PLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            9999999999999999888888887642                   1377888889988888888877775543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.07  E-value=1.2  Score=35.47  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007159          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (615)
Q Consensus       439 ~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~  491 (615)
                      +=+.+...+|...++ .+++..+.|++-+...++..+|.+...++.++...++
T Consensus         7 gRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~   58 (85)
T PF06779_consen    7 GRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR   58 (85)
T ss_pred             HHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            345556677777766 7999999999999999999999999998888755443

Note that many members are hypothetical proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.76  E-value=0.21  Score=52.52  Aligned_cols=154  Identities=11%  Similarity=0.010  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccHHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT----LVSKGLSITAVRKI  500 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr----~g~~~~~~~~~~~~  500 (615)
                      .+.......+...++...-..+.|+|+++ +|.+....+.++...-+.+.+.+++.|..+||    +||||..+..... 
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~-  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL-  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhH-
Confidence            44555555666677777778899999988 69999999998888888889999999999996    6888876643221 


Q ss_pred             HHHHHHHHHHHH----HHHhccccc--hHHHHHHHHHHhhhh-----hhhhhhhhhhhhccCcchhhH-HHHHHHHHHHH
Q 007159          501 MQSIGFLGPAFF----LTQLSHVRT--PAMAVLCMACSQGSD-----AFSQSGLYSNHQDIGPRYAGV-LLGLSNTAGVL  568 (615)
Q Consensus       501 ~~~~~~~~~~~~----l~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~-~~gl~~~~~~l  568 (615)
                      .+.+++......    ..+......  ....+...+++....     ...-+.-....+...++++.+ +.+.+..+..+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence            222222221111    111111111  112222222222211     112222222333344444555 89999999999


Q ss_pred             HHHHHHHHhhhe
Q 007159          569 AGVFGTAATGYI  580 (615)
Q Consensus       569 g~~igp~l~G~l  580 (615)
                      |+.+|..++++.
T Consensus       191 GnvLGY~~g~y~  202 (498)
T KOG0637|consen  191 GNVLGYALGSYL  202 (498)
T ss_pred             cceeeeeccccc
Confidence            999988887754

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.56  E-value=0.072  Score=51.33  Aligned_cols=65  Identities=8%  Similarity=0.190  Sum_probs=44.9

Q ss_pred             ccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Q 007159          415 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM  479 (615)
Q Consensus       415 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l  479 (615)
                      .+|...+++-.++.+.+.+.+.-.....-..|+|.|..+.++++....+++-.+..+.....+.+
T Consensus       192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v  256 (412)
T KOG4830|consen  192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV  256 (412)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence            35666677777777777777777777777788888887777777766666655555555444443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.03  E-value=0.05  Score=55.62  Aligned_cols=113  Identities=10%  Similarity=-0.005  Sum_probs=1.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hhccccHHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHHHHHHhhhhhhh
Q 007159          465 FCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFF----LTQLSHVRTPAMAVLCMACSQGSDAFS  539 (615)
Q Consensus       465 ~~~~~~i~~~ig~~l~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (615)
                      .+..++++-.+|+.+.++..-+. .+|.+......+++..-.++.+..-    .......+..+.++..++++..-+...
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            45678889999999887643221 2222222111111111111111000    000011122233333333333333333


Q ss_pred             hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 007159          540 QSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT  577 (615)
Q Consensus       540 ~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~  577 (615)
                      ........+.++++++..+-.+...+..+|..+|..+.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             HHHH----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566677777777777777777777776553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.78  E-value=6.6  Score=43.63  Aligned_cols=178  Identities=12%  Similarity=0.106  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 007159          429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG  508 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  508 (615)
                      ++....+...+++++..-+-.|+...++.+...+.-.............+++++++|.+-.|...+.. ...+..+++.+
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~-~s~i~~~G~~~  120 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINI-GSLISLLGLFG  120 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Confidence            33344455556666667777888888898887777777777777777778899999987554322211 11222222211


Q ss_pred             HHHHHHHh-ccc---------------cch---HHHHHHHHHHhhhhhhhhhhhhhhhhccC---c-c--hhhHHHHHHH
Q 007159          509 PAFFLTQL-SHV---------------RTP---AMAVLCMACSQGSDAFSQSGLYSNHQDIG---P-R--YAGVLLGLSN  563 (615)
Q Consensus       509 ~~~~l~~~-~~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~~g~~~gl~~  563 (615)
                      ........ ..+               ...   .+...+.....+.++.-+.....-.+.++   + +  .....+.+..
T Consensus       121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y  200 (571)
T KOG1237|consen  121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY  200 (571)
T ss_pred             HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence            11111111 000               000   11112222222333333332222333333   2 2  3347778888


Q ss_pred             HHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          564 TAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       564 ~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      ...++|..++-.+.-++-+..+|...|.+..++.+++.++++..
T Consensus       201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            88899999999999999888999999999999988888777654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.63  E-value=11  Score=39.68  Aligned_cols=178  Identities=12%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q 007159          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~  505 (615)
                      ++.+++..+-.......+.+..+.|.....+-+.  .-.+...+.+.+.+..++...+--+...|.....+.  .+....
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~--~l~~~~   95 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGY--LLSLIA   95 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3444444444445556666666655555433333  333333444444444444444444433332111111  111111


Q ss_pred             HHHHHHHHHHh---ccc--cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhhe
Q 007159          506 FLGPAFFLTQL---SHV--RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI  580 (615)
Q Consensus       506 ~~~~~~~l~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l  580 (615)
                      .+....+.+..   ...  .......+......+..+......+......|+++....++=.+.++.+....--..-...
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~  175 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAF  175 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhc
Confidence            11111111111   111  2223334445555666677777888888888998876555444444433333322222222


Q ss_pred             ecc-CChhHHHHHHHHHHHHHHHHHHHH
Q 007159          581 LQR-GSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       581 ~~~-~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      -|. .+-..-|.+..++.+++.+++..+
T Consensus       176 ~~~~~sA~~yF~~s~~~~llC~i~y~~l  203 (406)
T KOG1479|consen  176 SDSRTSALIYFITSTVILLLCFVLYLVL  203 (406)
T ss_pred             CCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence            222 344455666667777777776644

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.89  E-value=15  Score=37.55  Aligned_cols=144  Identities=14%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH-HHHHHHHH-HHHhccccchHHHHHHHHHH
Q 007159          455 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI-GFLGPAFF-LTQLSHVRTPAMAVLCMACS  532 (615)
Q Consensus       455 ~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~~~~  532 (615)
                      .|-+..+.+++.+.+...+.+|+.+.-++.|.--.-+....  -..+-.+ ++...+.. .+.......-+++.+.....
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~v--Elllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vI  115 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDV--ELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVI  115 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHH--HHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            56666677777777777777777666555544222211111  1111112 22222222 12222222333333333333


Q ss_pred             hhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheec-cCChhHHHHHHHHHHHHHH
Q 007159          533 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGT  601 (615)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~-~~g~~~~f~~~~~~~l~~~  601 (615)
                      +...+.-.+....+.+. ..+......+.....-++|...+.++..++.- ..|.-..-.+.+.+-+++.
T Consensus       116 G~LVG~EiPL~mrml~~-r~a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aA  184 (508)
T COG4262         116 GVLVGAEIPLLMRMLQR-RQAKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAA  184 (508)
T ss_pred             HHHHhcchHHHHHHHHH-HHHHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence            33334444444433333 11222223333344477787777777766543 3454444444454444444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.24  E-value=11  Score=37.07  Aligned_cols=133  Identities=15%  Similarity=0.086  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHhhhhcCCc--hHHHHHHHHHHHHHHHHHhh----hc-cChHHHHHHHHHHHhhhcchhh
Q 007159          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGK--PVLGFGVIWWSVATVLTPVA----AR-IGLPFLLIMRAFMGIGEGVAMP  316 (615)
Q Consensus       244 ~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk--~~l~~~~~l~~i~~~l~~~~----~~-~~~~~ll~~r~l~G~~~~~~~~  316 (615)
                      -|.+++.+.++.++|.-+..++..|-..|  ..+.+..++.+....+..+.    +. -+...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999998988875544  44555544444443332221    11 1122234555566778889999


Q ss_pred             HHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHH
Q 007159          317 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (615)
Q Consensus       317 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  376 (615)
                      ..+.+=+++.|+++|...+.++..-..+-..++-..--.-....+-|..|-+..+...+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a  423 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA  423 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence            999999999999999998888766444333322111000001134456666655554444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=84.60  E-value=16  Score=37.90  Aligned_cols=181  Identities=10%  Similarity=0.037  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhccccHHHHHH
Q 007159          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD-----TLVSKGLSITAVRK  499 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~d-----r~g~~~~~~~~~~~  499 (615)
                      .+..+.+.+.+.+..+.... .+|..++. .|.|.+..+.+...+.=-  ---+++..+.|     |+||||..+.-   
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp---  104 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVP---  104 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeee---
Confidence            45555556666555555444 88988885 578877766654433222  12346666777     99999864432   


Q ss_pred             HHHHHHHHHHHHHHHH---hc-cccchHHHHH--HHHHHhhhhhhhhhhhhh-hhhccCcchhhHHHHHHHHHHHHHHHH
Q 007159          500 IMQSIGFLGPAFFLTQ---LS-HVRTPAMAVL--CMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVF  572 (615)
Q Consensus       500 ~~~~~~~~~~~~~l~~---~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~gl~~~~~~lg~~i  572 (615)
                      ....++..+..+....   .. ....+...+.  .++...+..+..-.+... ......+++.|-+..........|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            1222332222222111   11 1111211111  111111211222222211 233456777766666655555666655


Q ss_pred             HHHHhhheec--------------c--CChhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 007159          573 GTAATGYILQ--------------R--GSWDDVFKVAVVLYIIGTLVWNLFATGER  612 (615)
Q Consensus       573 gp~l~G~l~~--------------~--~g~~~~f~~~~~~~l~~~l~~~~~~~~~k  612 (615)
                      +..+.=.+-.              .  .....-+++.+.+.+++..+..+.++++.
T Consensus       185 ~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~  240 (510)
T KOG3574|consen  185 GNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND  240 (510)
T ss_pred             hcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5544322222              0  11234455667777777666666665543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=83.90  E-value=22  Score=36.60  Aligned_cols=95  Identities=4%  Similarity=-0.100  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhcCCchHHH--HHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHh
Q 007159          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG--FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML  322 (615)
Q Consensus       245 g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~--~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i  322 (615)
                      |..-++..+..+++.+..|.+--++.|..-++  ++.+..+...++++...  +.|+..++.++.+.-.....+.+...+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--HIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--ceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            66677778888889999999987777664333  33333333334444444  788888888888888888888998899


Q ss_pred             hhcccccchhhHHHHHHHH
Q 007159          323 SKWIPVSERSRSLAFVYSG  341 (615)
Q Consensus       323 ~~~~~~~~r~~~~~~~~~~  341 (615)
                      +.....+.-|..+|+....
T Consensus       352 A~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHhhhhhhheeeeehHHHH
Confidence            9888888889888887763

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=82.66  E-value=47  Score=34.56  Aligned_cols=170  Identities=12%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q 007159          427 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF  506 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~  506 (615)
                      ..+...+++..++--........|+.+..|-+....+..-.+-+....+...+.|...|+..|.|+....+  .+.-++.
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqNlSv  107 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQNLSV  107 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhccHHH
Confidence            34445556666666555566666766655544444444434444444555566777788888887655332  2222333


Q ss_pred             HHHHHHH-HHhccc-----cchHHHHHHHHHHhhhhhhhhhhhhh----hh--------hccCcchhhHHHHHHHHHHHH
Q 007159          507 LGPAFFL-TQLSHV-----RTPAMAVLCMACSQGSDAFSQSGLYS----NH--------QDIGPRYAGVLLGLSNTAGVL  568 (615)
Q Consensus       507 ~~~~~~l-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~g~~~gl~~~~~~l  568 (615)
                      +..+..+ ..+...     ..++ +..+..+.............+    +.        +.-++.......+..-.+-..
T Consensus       108 ~vagglvi~~l~~~~~~~~t~pv-~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~  186 (503)
T KOG2601|consen  108 IVAGGLVITLLVHKDLKSATSPV-FTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQS  186 (503)
T ss_pred             HHHHHHHhhheeecchhcccccH-HHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhh
Confidence            2222222 222222     2333 222332222222222211111    11        111222333333555556667


Q ss_pred             HHHHHHHHhhheeccCChhHHHHHHHHHHHH
Q 007159          569 AGVFGTAATGYILQRGSWDDVFKVAVVLYII  599 (615)
Q Consensus       569 g~~igp~l~G~l~~~~g~~~~f~~~~~~~l~  599 (615)
                      ...+.|.+.|.+....+.+..-...++-.++
T Consensus       187 tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  187 TNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            7889999999999988777654444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	615
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-77
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-13
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	7e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  252 bits (645), Expect = 2e-77
 Identities = 78/441 (17%), Positives = 156/441 (35%), Gaps = 20/441 (4%)

Query: 182 PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS 241
           P +A LP  ++  T         RW + L  F  +    + R N ++A+ P   E  ++ 
Sbjct: 8   PHKARLPAAEIDPTYRRL-----RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSR 61

Query: 242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPF 299
             +G   S     Y  ++ + G  +D+   +  L  G+I  +   +       A   +  
Sbjct: 62  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121

Query: 300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQ 358
           + ++    G  +G+  P     +  W    ER   ++       +G  +  L     +  
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEA-----VS 413
              W +  Y       +           +P+       EE ++      +++A       
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 241

Query: 414 VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 473
            I  + +L    +W + I++       + +L W PTY  +V  F L +S     L     
Sbjct: 242 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301

Query: 474 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
                + GW++D +       T V      +  +  A  +  ++    P + ++CM    
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIG 357

Query: 534 GSDAFSQSGLYSNHQDIGPRYA-GVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFK 591
                    +  +  ++ P+ A G   G +   G L G V  +A  GY +    WD  F 
Sbjct: 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417

Query: 592 VAVVLYIIGTLVWNLFATGER 612
           V +   I+  ++  +   GE+
Sbjct: 418 VMIGGSILAVILLIVVMIGEK 438

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 61/401 (15%), Positives = 134/401 (33%), Gaps = 61/401 (15%)

Query: 226 MSIAI-LP----MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVI 280
           M+  I +P    M+++ N     V  +  ++   Y ++Q+  G  +D+ G +PV+  G+ 
Sbjct: 14  MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73

Query: 281 WWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP--VSERSRSLAFV 338
            + +AT++    + + +  L+   A  G+G GV       ++++ +P  + ER++ L   
Sbjct: 74  IFMLATLVAVTTSSLTV--LIAASAMQGMGTGVGG-----VMARTLPRDLYERTQ-LRHA 125

Query: 339 YSGMYLGSVTGLA--VSPI----LIQKFGWPSVFYS---FGSLGSIWFALWLKKAYSSPK 389
            S   L     ++  ++P+    L   + W + +       +  +   A W+        
Sbjct: 126 NS--LLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM-------- 175

Query: 390 EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 449
             PE R  +               +  +K +   +     ++       G          
Sbjct: 176 --PETRPVDAPR---------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224

Query: 450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP 509
               VL  +     +  +LP          G W A     +  ++     I   +   G 
Sbjct: 225 LMGAVLGLSSMTVSILFILPIPAAFF----GAWFAGRPNKRFSTLMWQSVICCLLA--GL 278

Query: 510 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA 569
             ++     V      ++  A              S   +  P  AG       TAG L 
Sbjct: 279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAG-------TAGALV 331

Query: 570 GVF---GTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 607
           G     G+     +           + +++ ++G L+   +
Sbjct: 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCW 372

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 48/305 (15%), Positives = 97/305 (31%), Gaps = 38/305 (12%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIW 265
            +   L  S F L  +      I +    + F   +   GLIQS+F++GY +  I  GI 
Sbjct: 25  IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAM--PAMNNMLS 323
             K   K  +  G+  +++   L   AA I   + L +     I  G+     A N  ++
Sbjct: 85  MKKLSYKAGIITGLFLYALGAALFWPAAEIMN-YTLFLVGLFIIAAGLGCLETAANPFVT 143

Query: 324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-----------------------F 360
              P S     L    +    G++  +     LI                          
Sbjct: 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHS 203

Query: 361 GWPSVFYSFGSLGSIWFALWLKKAYSS-PKEDPELRAEEKRHILGGSISKEAVSVIPWKL 419
              SV   +  + +I   + L    +  P    +  ++ K+     S+S+          
Sbjct: 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSR---------- 253

Query: 420 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL-KFNLTESGLFCVLPWLTMAVFAN 478
           +         +++ FC+        +++  Y  + +       +  +     +   +   
Sbjct: 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313

Query: 479 MGGWI 483
            G W+
Sbjct: 314 TGTWL 318

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 47/392 (11%), Positives = 106/392 (27%), Gaps = 51/392 (13%)

Query: 233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIW-WSVATVLTP 290
           +    + + +  G+I ++     LL Q + G+ +DK G  K +L          A     
Sbjct: 34  LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93

Query: 291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMY--LGSVT 348
           +   +    +L+     GI  G    A    +  +I    R  +  F  + M+  +G   
Sbjct: 94  IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153

Query: 349 GLAVSPILIQKFGWPSVFYSFG-SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSI 407
           G ++  I+         +   G +L       + K    S                    
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA 213

Query: 408 SKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN--------- 458
            +          +  +  +W L +     +    +       ++                
Sbjct: 214 LE----------LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263

Query: 459 ------LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF 512
                 L  + +    P +       +        +    +I +VR I  S         
Sbjct: 264 VTTMGELLNASIMFFAPLI-------INRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316

Query: 513 LTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGV-LAGV 571
           + +  H       V                          R++  +  +       LA +
Sbjct: 317 ILKTLH----MFEV---------PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363

Query: 572 FGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 603
           F +   G + +   +   + V  ++ +  TL+
Sbjct: 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 20/187 (10%), Positives = 57/187 (30%), Gaps = 8/187 (4%)

Query: 421 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 480
           L     W   +  F + +       + P + + +   + +++G+      L   +F  + 
Sbjct: 4   LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63

Query: 481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV---LCMACSQGSDA 537
           G ++D L  +   +  +  ++          F   L +       V       C      
Sbjct: 64  GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123

Query: 538 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 597
             ++ +    +     +     G +   G +    G +  G +    +    +  +    
Sbjct: 124 AVEAFIEKVSRRSNFEF-----GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178

Query: 598 IIGTLVW 604
           I+  L++
Sbjct: 179 ILAVLLF 185

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 10/181 (5%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTP 290
             + + +    T   I + +     L+  +GG  AD+  G +P + +G +   +  ++  
Sbjct: 44  ISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV-- 101

Query: 291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV--YSGMYLGSVT 348
           +A   G   L      + IG G   P ++ ++       +R R   F     G+ LG+  
Sbjct: 102 LALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161

Query: 349 GLAVSPILIQKFGWPSVFYSFG---SLGSIWFALWLKK--AYSSPKEDPELRAEEKRHIL 403
              +     +  G+   F        +G + +    KK       +    L  EE + +L
Sbjct: 162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221

Query: 404 G 404
            
Sbjct: 222 V 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 54/443 (12%), Positives = 107/443 (24%), Gaps = 155/443 (34%)

Query: 148 QSLDVK--EDRICAFYKSDEYD-ITEAKVDSLQSTEI-------PSEAV--LPDGDLQET 195
            + D K  +D   +    +E D I  +K     +  +         E V    +  L+  
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 196 SPW-WEQFPKRWVVVLLCFSAFLLC--NMDRVNMSIAILPMSKEFNWNSTTVGL--IQSS 250
             +             +    ++     +   N   A   +S+   +      L  ++ +
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 251 FFWGYLLTQIVGGIWADKFGGKPVL--------------GFGVIWWSVATVLTPVAARIG 296
                +L   V G       GK  +               F + W ++    +P      
Sbjct: 151 ---KNVLIDGVLGS------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 297 LPFLL--IMRAFMGIGEGVAMPAMN------------------NML-------SKW---- 325
           L  LL  I   +    +  +   +                   N L       +      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 326 ------IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 379
                 I ++ R + +           ++    + I +                      
Sbjct: 262 FNLSCKILLTTRFKQVTDF--------LSAATTTHISLDHHSMT--LTPDEVKS--LLLK 309

Query: 380 WLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG 439
           +L      P++ P                 E ++  P    LS       II+    +  
Sbjct: 310 YLD---CRPQDLPR----------------EVLTTNP--RRLS-------IIAESIRDG- 340

Query: 440 TFILLTWMPTYYNQVLKFNLT---ESGL--------------FCVLP---WLTMAVFANM 479
              L TW    +  V    LT   ES L                V P    +   + + +
Sbjct: 341 ---LATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 480 GGW----------IADTLVSKGL 492
             W          + + L    L
Sbjct: 396 --WFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	615
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.98
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.52
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.32
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.27
2xut_A	524	Proton/peptide symporter family protein; transport	99.24
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.14
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3e-36  Score=323.52  Aligned_cols=396  Identities=16%  Similarity=0.206  Sum_probs=306.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      +.+|+.+..+++..+...++...+.+.+|.+.+++ .+..++|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            34567777888888888888899999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh----hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc
Q 007159          283 SVATVLTPV----AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (615)
Q Consensus       283 ~i~~~l~~~----~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~  358 (615)
                      +++.+++++    ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++||.+++++.+
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998    77  778899999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCC-chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhh----hhc-CCccccccccccHHHHhhhhhHHHHHHH
Q 007159          359 KFG-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH----ILG-GSISKEAVSVIPWKLILSKAPVWALIIS  432 (615)
Q Consensus       359 ~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~l~  432 (615)
                      .+| ||+.|++.+++.++..++.+...++.+++....+.++.+.    ... ....+...+...++.+++++.++.+.+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  260 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence            888 9999999888877666655554444433211110000000    000 0000111111124667888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccccHHHHHHHHHHHHHHH-H
Q 007159          433 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL--VSKGLSITAVRKIMQSIGFLG-P  509 (615)
Q Consensus       433 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~--g~~~~~~~~~~~~~~~~~~~~-~  509 (615)
                      .++.......+..++|.|+++.+|++..+.+++.++..++.+++.++.|++.||+  ++|+....       ...+.. .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-------~~~~~~~~  333 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV-------FFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-------HHHHHHHH
Confidence            9998888999999999999998899999999999999999999999999999999  77743221       111111 1


Q ss_pred             HHHHHHhccccchH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHhhheeccCChh
Q 007159          510 AFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWD  587 (615)
Q Consensus       510 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~l-g~~igp~l~G~l~~~~g~~  587 (615)
                      .+.++........+ ..+..++.+.+.............+..+++.+|++.|+.+.+..+ |..++|.+.|++.+..||.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  413 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  413 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            22222222212333 333333344433333333344556667788999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 007159          588 DVFKVAVVLYIIGTLVWNLFA  608 (615)
Q Consensus       588 ~~f~~~~~~~l~~~l~~~~~~  608 (615)
                      ..|++.+++.+++.++.++..
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          414 GGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888877766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.2e-35  Score=315.66  Aligned_cols=375  Identities=13%  Similarity=0.148  Sum_probs=290.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHH
Q 007159          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (615)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~  283 (615)
                      +++..+..+++.++..+++.....+..|.+.+++|++..++|++.+++.+++.++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34556666677777788888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhh-cC
Q 007159          284 VATVLT---PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QK  359 (615)
Q Consensus       284 i~~~l~---~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~-~~  359 (615)
                      ++.+++   .+++  +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|.++||.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999988   6667  88999999999999999999999999999999999999999999999999999999999998 65


Q ss_pred             CC-------------------------chHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCcccccccc
Q 007159          360 FG-------------------------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV  414 (615)
Q Consensus       360 ~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (615)
                      .+                         ||+.|++.+++.++..++++....++.+++++.++            ++....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~~~~  248 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------KQGSFS  248 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------STTSHH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------cccchh
Confidence            55                         99999887777666555544432211111110000            011112


Q ss_pred             ccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007159          415 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY-YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (615)
Q Consensus       415 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~-~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~  493 (615)
                      .+++.++++|.++...+..++..........++|.| +++.+|++..+.+.+.++..++.++++++.|++.||+++|+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  328 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            356778899999999998888888888899999999 8888899999999999999999999999999999999988643


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHH
Q 007159          494 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFG  573 (615)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~ig  573 (615)
                      ...         .++..+.+......+.....+...+.+.+.....+.......+..+++ ++.+.++.. ...+|..++
T Consensus       329 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~  397 (438)
T 3o7q_A          329 AAY---------ALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIV  397 (438)
T ss_dssp             HHH---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHH
T ss_pred             HHH---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHH
Confidence            321         111111112222223333344444444444444443333345555544 888888877 678999999


Q ss_pred             HHHhhheeccCC-hhHHHHHHHHHHHHHHHH
Q 007159          574 TAATGYILQRGS-WDDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       574 p~l~G~l~~~~g-~~~~f~~~~~~~l~~~l~  603 (615)
                      |.+.|++.|..| ++..|.+.+++.++..++
T Consensus       398 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          398 TPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            999999999977 999988776665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.98  E-value=1.7e-32  Score=287.33  Aligned_cols=358  Identities=14%  Similarity=0.136  Sum_probs=278.5

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 007159          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~  289 (615)
                      +++++..++..++...+.+.+|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            34555667777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHH
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~  369 (615)
                      ++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++++.+..|||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9888  78889999999999999999999999999999999999999999999999999999999999988999999988


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (615)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~  449 (615)
                      +++.++..++.....+++++++++.                .....++++++++|.++...+..++.......+..++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777665553433333332221110                001124566788899999988888888888899999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH-HHHHHH--HHHhccccchHHH-
Q 007159          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF-LGPAFF--LTQLSHVRTPAMA-  525 (615)
Q Consensus       450 ~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~--l~~~~~~~~~~~~-  525 (615)
                      |+++.+|+++.+.+.+.....++.+++.++.+++.||++++  ..       ..... ...+..  ..........+.. 
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MW-------QSVICCLLAGLLMWIPDWFGVMNVWTLL  295 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HH-------HHHHHHHHTSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHhhhccccHHHHH
Confidence            99998899999999999999999999999999999998762  11       11111 111111  0111001122322 


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHH
Q 007159          526 VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV  595 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~  595 (615)
                      +...+.+.+.....+.......+.. |+++|++.|+.+....+|..++|.+.|.+.+..++...+.+.+.
T Consensus       296 ~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          296 VPAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHHHTSSTTHHHHHTHH-HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3333333333333333333344444 48999999999999999999999999999888888777766443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=4.8e-30  Score=278.79  Aligned_cols=388  Identities=13%  Similarity=0.101  Sum_probs=263.1

Q ss_pred             HHHHHhhhhhHHHHhHHH-HHhh-----cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhh-cCCchHHHHHHHHHHHHHH
Q 007159          215 AFLLCNMDRVNMSIAILP-MSKE-----FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATV  287 (615)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-i~~~-----~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr-~Grk~~l~~~~~l~~i~~~  287 (615)
                      ..+...+....+...++. +.++     +|++..++|++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            333333444444344444 4444     99999999999999999999999999999999 8999999999999999999


Q ss_pred             HHHhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccc--hhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHH
Q 007159          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (615)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~  365 (615)
                      ++++++  +++.+++.|++.|++.+...+...+++.|++|+++  |+.++++++.+..+|.++||.+++++.+..|||+.
T Consensus       101 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A          101 VLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999887  78889999999999999999999999999999988  77888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCC-----CCccccHHHHhhhhc-------------------CCcc-cc----------
Q 007159          366 FYSFGSLGSIWFALWLKKAYSSPK-----EDPELRAEEKRHILG-------------------GSIS-KE----------  410 (615)
Q Consensus       366 f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------------~~~~-~~----------  410 (615)
                      |++.++..++..++.+...++..+     ++.+...++.++..+                   +... ..          
T Consensus       179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (491)
T 4aps_A          179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAI  258 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHH
Confidence            998876665555444433222111     111111111111000                   0000 00          


Q ss_pred             -----------ccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Q 007159          411 -----------AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM  479 (615)
Q Consensus       411 -----------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l  479 (615)
                                 ...........+....+.+.+..++..........++|.|.++..+.+....+.+.....++..++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (491)
T 4aps_A          259 AIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPF  338 (491)
T ss_dssp             HHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHH
Confidence                       000000001111122344444555555556666778899999888888777788888888999999999


Q ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhcc----------ccchHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 007159          480 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH----------VRTPAMAVLCMACSQGSDAFSQSGLYSNHQD  549 (615)
Q Consensus       480 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (615)
                      .+++.||+++|+.....    .+..+.+..++.+.....          .+..+..+..++.+.+.....+.......+.
T Consensus       339 ~~~l~~r~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          339 FAWLWTAWKKNQPSSPT----KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             HHHHHHHTTTC---CHH----HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCchH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999988653311    111222222222211111          1233333344444444444445555556667


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHHhc
Q 007159          550 IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT  609 (615)
Q Consensus       550 ~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~~~  609 (615)
                      .|++.||++.|+.+....+|..++|.+.|++.+. ++...|.+.+++++++.++.++..+
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999988764 6777888887777777666555433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.6e-27  Score=258.71  Aligned_cols=399  Identities=15%  Similarity=0.169  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCC--------CchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHH
Q 007159          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNW--------NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (615)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~--------s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~  277 (615)
                      |.+.+...++.++.+++...++.++|.+.++++.        +..+.|++.+++.+|.+++++++|+++||+|||+++++
T Consensus        11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~   90 (491)
T 4gc0_A           11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4444455566778888888888889988877742        34567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh------------------hhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHH
Q 007159          278 GVIWWSVATVLTPV------------------AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY  339 (615)
Q Consensus       278 ~~~l~~i~~~l~~~------------------~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  339 (615)
                      +.+++.++.+++++                  ++  +++.++++|+++|++.|...+....+++|+.|+++|++..++..
T Consensus        91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~  168 (491)
T 4gc0_A           91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence            99999999999884                  44  78999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHhhhhcC--------CCchHHHHHHHHHHHHHHHHHHhhhcCCCCC-----CccccHHHHhhhhcC-
Q 007159          340 SGMYLGSVTGLAVSPILIQK--------FGWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHILGG-  405 (615)
Q Consensus       340 ~~~~lG~~ig~~l~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-  405 (615)
                      .+..+|.++++.++..+...        .+||+.+.+..+..++..+ .....++.|..     +.+...+..++..+. 
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            99999999999888776543        2355555544444333333 33333433211     000000000000000 


Q ss_pred             ----------CccccccccccHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q 007159          406 ----------SISKEAVSVIPWKLILSKAPVWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA  474 (615)
Q Consensus       406 ----------~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~  474 (615)
                                ....+..+........+.+.........++. ..+...+..+.|.+.+. .+.+.........+.++...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  326 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINL  326 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHH
Confidence                      0000000011112222233333333333333 33344455555555544 68888888777788888899


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhh-hhhhhhhhhhhhhhccCcc
Q 007159          475 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQG-SDAFSQSGLYSNHQDIGPR  553 (615)
Q Consensus       475 ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  553 (615)
                      ++.++.+++.||+|||+....+.  ....++++..+.  ............+...+...+ ..+..+.......+..|.+
T Consensus       327 ~~~~~~~~l~dr~Grr~~~~~~~--~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~  402 (491)
T 4gc0_A          327 TFTVLAIMTVDKFGRKPLQIIGA--LGMAIGMFSLGT--AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  402 (491)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHH--HHHHHHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHHHhhcCcchhccch--HHHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence            99999999999999997554332  111111111111  111122222222222222222 2222233333445567779


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhheecc------CChhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 007159          554 YAGVLLGLSNTAGVLAGVFGTAATGYILQR------GSWDDVFKVAVVLYIIGTLVWNLFATGER  612 (615)
Q Consensus       554 ~~g~~~gl~~~~~~lg~~igp~l~G~l~~~------~g~~~~f~~~~~~~l~~~l~~~~~~~~~k  612 (615)
                      .|+++.|+.+.+..+++.+++.+.+.+.+.      .++...|++.+++++++.++.+++.++.|
T Consensus       403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999999999999888777643      35566788888888888777666554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=1.2e-27  Score=254.51  Aligned_cols=373  Identities=12%  Similarity=0.029  Sum_probs=235.9

Q ss_pred             HhhhhhHHHHhHHHH-HhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHH---HHHhhhc
Q 007159          219 CNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV---LTPVAAR  294 (615)
Q Consensus       219 ~~~~~~~~~~~~~~i-~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~---l~~~~~~  294 (615)
                      .........+.+|.+ .+++|++..++|++.+++.+++.++++++|+++||+|||++++++.++.+++..   ...+...
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~   98 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL   98 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445666664 556899999999999999999999999999999999999999988877654321   1122210


Q ss_pred             cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccc--cchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHH
Q 007159          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (615)
Q Consensus       295 ~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~  372 (615)
                      . ...++..+++.|++.+...+.....+.++.++  ++++..++.......+|..++|.+++++.+ .+|++.|++.++.
T Consensus        99 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~  176 (417)
T 2cfq_A           99 L-QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC  176 (417)
T ss_dssp             H-HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence            0 00123345555555554444444444444432  456777888888889999999999999887 5899999876665


Q ss_pred             HHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007159          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (615)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  452 (615)
                      .++..+..+...+++++..++.   +..     ..+++.....+++.+++++.++.+.+..++....+..+..++|.|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (417)
T 2cfq_A          177 ALILAVLLFFAKTDAPSSATVA---NAV-----GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT  248 (417)
T ss_dssp             TTTHHHHSCSSCCCCSCSSCSS---SSS-----SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccccc---ccc-----ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433333332222221111000   000     00011111234566788888887776655555555666677899987


Q ss_pred             HHhCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH-
Q 007159          453 QVLKF---NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-  528 (615)
Q Consensus       453 ~~~g~---s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  528 (615)
                      +.++.   +....++..++..++.+++.++.+++.||+++|+.+..         +.++.++.+.........+..+.. 
T Consensus       249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T 2cfq_A          249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL---------AGTIMSVRIIGSSFATSALEVVILK  319 (417)
T ss_dssp             HTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH---------HHHHHHHHHHHHTTCCSHHHHHHHT
T ss_pred             HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH---------HHHHHHHHHHHHHHhccHHHHHHHH
Confidence            75542   23455777778888888999999999999998864321         111222222222222233322222 


Q ss_pred             HHHHhhhhhhhhhhhhhhhhccCcchhhHHHHH-HHHHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          529 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL-SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl-~~~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .+.+.+.............+..|++.||++.++ ++....+|+.++|.+.|++.+..|+...|.+.+++++++.++.+..
T Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            222222222222333345556677999999999 4888899999999999999998899999999998888887765554


Q ss_pred             hcC
Q 007159          608 ATG  610 (615)
Q Consensus       608 ~~~  610 (615)
                      .++
T Consensus       400 ~~~  402 (417)
T 2cfq_A          400 LSG  402 (417)
T ss_dssp             SCC
T ss_pred             hcC
Confidence            443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=7.7e-25  Score=239.79  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=138.4

Q ss_pred             hhhhHHHHhHHH-HHhhcC------CCchhhHHHHHHHHHHHHHHHHhhHHhhhhc-CCchHHHHHHHHHHHHHHHHHhh
Q 007159          221 MDRVNMSIAILP-MSKEFN------WNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVA  292 (615)
Q Consensus       221 ~~~~~~~~~~~~-i~~~~g------~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~-Grk~~l~~~~~l~~i~~~l~~~~  292 (615)
                      +....+.+.++. +.+++|      ++..++|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.++++++
T Consensus        26 ~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~  105 (524)
T 2xut_A           26 FSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF  105 (524)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence            333334444444 567889      9999999999999999999999999999999 99999999999999999888877


Q ss_pred             hccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHH---HHHHHHHHHHHHhhhHhhhhcCCCchHHHHHH
Q 007159          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF---VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (615)
Q Consensus       293 ~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~  369 (615)
                      + .+++.+++.|++.|++.+...+...+++.+++|+++|+++.+.   ...+..+|.++||.+++++.+..||++.|++.
T Consensus       106 ~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          106 E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            5 2577899999999999999999999999999999999876665   88999999999999999999989999999988


Q ss_pred             HHHHHHHHHHHHh
Q 007159          370 GSLGSIWFALWLK  382 (615)
Q Consensus       370 ~~~~~~~~~~~~~  382 (615)
                      +++.++..++++.
T Consensus       185 ~~~~~~~~~~~~~  197 (524)
T 2xut_A          185 GVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH
Confidence            8776665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.52  E-value=1.5e-13  Score=146.59  Aligned_cols=170  Identities=15%  Similarity=0.089  Sum_probs=141.6

Q ss_pred             HHHHHHhhhhhHHHHhHHHHHhh-cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhc--CCchHHHHHHHHHH-HHHHHH
Q 007159          214 SAFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVLGFGVIWWS-VATVLT  289 (615)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~i~~~-~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~--Grk~~l~~~~~l~~-i~~~l~  289 (615)
                      +..++.......+....|.+.++ +|++..+.+++.++..++.+++.++.|++.||+  |+|+.+.++.++.. ++.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            33344445555566677777666 899999999999999999999999999999999  99999888877766 666666


Q ss_pred             HhhhccChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHH-HHHHHhhhHhhhhcCCCchHHHHH
Q 007159          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYS  368 (615)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~l~~~l~~~~gw~~~f~~  368 (615)
                      .+.+..+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+++.+..||++.|++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            6654336777788888999999999999999999999999999999999999999 999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhh
Q 007159          369 FGSLGSIWFALWLKK  383 (615)
Q Consensus       369 ~~~~~~~~~~~~~~~  383 (615)
                      .+++.++..++.+..
T Consensus       419 ~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          419 MIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887776665555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=7.9e-11  Score=127.10  Aligned_cols=175  Identities=10%  Similarity=0.047  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccHHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQV-----LKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAV  497 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr-~g~~~~~~~~~  497 (615)
                      +.++.+.+..++..+.++....+++.|+++.     +|++..+.+++.+...++..++.++.|+++|| +|+|+.+..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~-   91 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG-   91 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH-
Confidence            3567777777888888889999999999998     99999999999999999999999999999999 8999654322 


Q ss_pred             HHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHhhhhhhhhhhhhhhhhccCcch--hhHHHHHHHHHHHHHHHHHH
Q 007159          498 RKIMQSIGFLGPAFFLTQLSHV-RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY--AGVLLGLSNTAGVLAGVFGT  574 (615)
Q Consensus       498 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~gl~~~~~~lg~~igp  574 (615)
                              .++..+........ +...+.+..++.+.+.....+.......+..++++  |+.+.++.+....+|..++|
T Consensus        92 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  163 (491)
T 4aps_A           92 --------GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP  163 (491)
T ss_dssp             --------HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence                    11222222222223 33344444444455544455555555666677777  78889989999999999999


Q ss_pred             HHhhheeccCChhHHHHHHHHHHHHHHHHHHHH
Q 007159          575 AATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF  607 (615)
Q Consensus       575 ~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~~  607 (615)
                      .++|++.+..||+..|++.+++.+++.+++.+.
T Consensus       164 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888877777666544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.32  E-value=1.9e-11  Score=129.67  Aligned_cols=152  Identities=11%  Similarity=0.057  Sum_probs=123.5

Q ss_pred             hhhhHHHHhHHHH-Hhh-cCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChH
Q 007159          221 MDRVNMSIAILPM-SKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (615)
Q Consensus       221 ~~~~~~~~~~~~i-~~~-~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~  298 (615)
                      .....+....|.+ .++ +|.+..+.+++.+++.++..++.++.|++.||+|||+++.++.++.+++.++..+.+  +.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  349 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV  349 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcH
Confidence            3334444555655 555 599999999999999999999999999999999999999999999988888877766  333


Q ss_pred             HHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCC-chHHHHHHHHHHHHHH
Q 007159          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWF  377 (615)
Q Consensus       299 ~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~  377 (615)
                      . ++..++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..
T Consensus       350 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          350 G-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             H-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3 44458889999999999999999999755 888888877 567999999999999999988 9999887655544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.27  E-value=2.2e-11  Score=128.92  Aligned_cols=143  Identities=9%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhcchhhHHHH
Q 007159          241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN  320 (615)
Q Consensus       241 ~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~~~~~~~~~  320 (615)
                      ...++++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.+  +.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45668888888889999999999999999999999988888888777766665  6666777777888887777777889


Q ss_pred             HhhhcccccchhhHHHH-HHHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 007159          321 MLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (615)
Q Consensus       321 ~i~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  385 (615)
                      ++.|.+|++.|+.+.++ ++....+|.+++|.++|++.+..|+...|++.+++.++..++.+...+
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999998 478888999999999999998888888888877777666655444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.24  E-value=1.6e-10  Score=125.79  Aligned_cols=174  Identities=13%  Similarity=0.072  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccHHH
Q 007159          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLK------FNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITA  496 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~g------~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~-g~~~~~~~~  496 (615)
                      +.++.+.+..++..++.+....++|.|+++.+|      ++..+.+++.+...++..++.++.|+++||+ |+|+.+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~   91 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL   91 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            456677777888888888899999999998899      9999999999999999999999999999999 998644322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-chH-HHHHHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHH---HHHHHHHHHH
Q 007159          497 VRKIMQSIGFLGPAFFLTQLSHVR-TPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL---SNTAGVLAGV  571 (615)
Q Consensus       497 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl---~~~~~~lg~~  571 (615)
                               .++..+......... ..+ +.+..++.+.+.....+.......+..++++|+++.+.   .+....+|..
T Consensus        92 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~  162 (524)
T 2xut_A           92 ---------SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF  162 (524)
T ss_dssp             ---------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence                     111111111111222 333 33444444444444445555556667788888766655   8899999999


Q ss_pred             HHHHHhhheeccCChhHHHHHHHHHHHHHHHHHHH
Q 007159          572 FGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL  606 (615)
Q Consensus       572 igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l~~~~  606 (615)
                      ++|.++|++.+..||+..|++.+++.+++.+++.+
T Consensus       163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999899999999988887776665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.14  E-value=2.4e-10  Score=118.73  Aligned_cols=166  Identities=11%  Similarity=0.023  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Q 007159          428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~  507 (615)
                      .+.+..++...........+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.  ....++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~   80 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM--SIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH--HHHHHHHH
Confidence            34455566666666677777876554 8999999999999999999999999999999999998876443  11122221


Q ss_pred             HHHHHHHHhccccchHHHH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHhhheeccCCh
Q 007159          508 GPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW  586 (615)
Q Consensus       508 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~lg~~igp~l~G~l~~~~g~  586 (615)
                      ...       ..+..+.++ ..++.+.+.....+.......+..++++|+++.++.+....+|..++|.+++++.+..+|
T Consensus        81 ~~~-------~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  153 (375)
T 2gfp_A           81 VAV-------TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW  153 (375)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHH-------HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence            111       112333333 333334443334444444455666779999999999999999999999999999998899


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 007159          587 DDVFKVAVVLYIIGTLV  603 (615)
Q Consensus       587 ~~~f~~~~~~~l~~~l~  603 (615)
                      +..|++.+++.++..++
T Consensus       154 ~~~~~~~~~~~~~~~~~  170 (375)
T 2gfp_A          154 RACYLFLLVLCAGVTFS  170 (375)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999888877766653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=5.1e-09  Score=112.77  Aligned_cols=181  Identities=15%  Similarity=0.075  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHH
Q 007159          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (615)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l  288 (615)
                      ........+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+..+..++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            33334444444455555666777888888888888888888888899999999999999999999999998888877766


Q ss_pred             HHhhh--ccChHHHHHHHHHHHhh-hcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhc------C
Q 007159          289 TPVAA--RIGLPFLLIMRAFMGIG-EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ------K  359 (615)
Q Consensus       289 ~~~~~--~~~~~~ll~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~------~  359 (615)
                      .+...  ....+..++..++...+ .....+....+.+|.+|.+.|++++|+......+|.++++.+.+.+.+      .
T Consensus       359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~  438 (491)
T 4gc0_A          359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH  438 (491)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            54332  11222222222222222 223346778899999999999999999999999999999888776543      3


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007159          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPK  389 (615)
Q Consensus       360 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  389 (615)
                      .++.+.|++.++++++..++.++..|+.+.
T Consensus       439 ~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          439 FHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            456778888888888777777666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	615
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-38
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-16

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (362), Expect = 6e-38
 Identities = 77/441 (17%), Positives = 156/441 (35%), Gaps = 20/441 (4%)

Query: 182 PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS 241
           P +A LP  ++  T         RW + L  F  +    + R N ++A +P   E  ++ 
Sbjct: 5   PHKARLPAAEIDPTYRRL-----RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSR 58

Query: 242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV--AARIGLPF 299
             +G   S     Y  ++ + G  +D+   +  L  G+I  +   +       A   +  
Sbjct: 59  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 118

Query: 300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQ 358
           + ++    G  +G+  P     +  W    ER   ++       +G  +  L     +  
Sbjct: 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV---- 414
              W +  Y       +           +P+       EE ++      +++A       
Sbjct: 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 238

Query: 415 -IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 473
            I  + +L    +W + I++       + +L W PTY  +V  F L +S     L     
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298

Query: 474 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
                + GW++D +       T     +  +  +  A  +  ++    P + ++CM    
Sbjct: 299 IPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354

Query: 534 GSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFK 591
                    +  +  ++ P + AG   G +   G L G V  +A  GY +    WD  F 
Sbjct: 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 414

Query: 592 VAVVLYIIGTLVWNLFATGER 612
           V +   I+  ++  +   GE+
Sbjct: 415 VMIGGSILAVILLIVVMIGEK 435

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 26/245 (10%), Positives = 71/245 (28%), Gaps = 4/245 (1%)

Query: 157 ICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAF 216
             A  +          ++  ++          + +L     + +      ++  +  +  
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG 276
            +  +    +  +   + +  ++           + +  +   ++ G  +DK        
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 277 FGVIWWS---VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSR 333
            GV + +   +AT++  +         +I    +G      +  +     +  P      
Sbjct: 320 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 379

Query: 334 SLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP 392
           +  F     YL GSV   A+    +  FGW   F        +   L +       +   
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439

Query: 393 ELRAE 397
           +L  E
Sbjct: 440 QLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 77.9 bits (190), Expect = 6e-16
 Identities = 46/407 (11%), Positives = 108/407 (26%), Gaps = 13/407 (3%)

Query: 210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF 269
           +     F    +         + +    + + +  G+I ++     LL Q + G+ +DK 
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 270 GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS 329
           G +  L + +    V      +     L    I+   +  G  +         +    + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 330 ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK 389
           + SR   F +    +    G A+   ++      +  + F         L +   ++   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 390 EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 449
                           + S +    +  +  L    ++ + +   C             T
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV--SCTYDVFDQQFANFFT 248

Query: 450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP 509
            +    +      G    +  L  A        I               K    +     
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI---------INRIGGKNALLLAGTIM 299

Query: 510 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP--RYAGVLLGLSNTAGV 567
           +  +   S   +    V+          F   G +            A + L        
Sbjct: 300 SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359

Query: 568 LAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 614
           LA +F +   G + +   +   + V  ++ +  TL+     +G   L
Sbjct: 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	615
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-35  Score=312.94  Aligned_cols=400  Identities=16%  Similarity=0.211  Sum_probs=301.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHhHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHH
Q 007159          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (615)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~  282 (615)
                      +.+|.+++.++++++..+++...++...|.+. |+|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   99 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            34688888888888888888888888888765 68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc--cChHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHhhhHhhhhcC-
Q 007159          283 SVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-  359 (615)
Q Consensus       283 ~i~~~l~~~~~~--~~~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~-  359 (615)
                      +++.++++++..  .+++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|.+++|.+++.+... 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            999988876541  25778999999999999999999999999999999999999999999999999999998877664 


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHh-----hhhcCCccccccccccHHHHhhhhhHHHHHHHHH
Q 007159          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----HILGGSISKEAVSVIPWKLILSKAPVWALIISHF  434 (615)
Q Consensus       360 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  434 (615)
                      .+|++.|++.+++.++..++.+...++.+++......++.+     ...+....+...+....+..++++.++.+....+
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence            47999999888887777766666655544332211111100     0000011111122334566778889999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 007159          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT  514 (615)
Q Consensus       435 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~  514 (615)
                      +.....+....+.|.|+.+.++++..+.+....+..++.+++.++.|++.||+++++....    ...............
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  335 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVY  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH----HHHHHHHHHHHHHHT
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc----cchhHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999999999999999988754321    111122222222222


Q ss_pred             HhccccchHHHHHHH-HHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHHHHHHH-HHHHHHHHhhheeccCChhHHHHH
Q 007159          515 QLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWDDVFKV  592 (615)
Q Consensus       515 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~~~~~l-g~~igp~l~G~l~~~~g~~~~f~~  592 (615)
                      ........+..+.+. +.+.+.............+..+++.+|++.|+.+.+.++ |..++|.+.|++.|..|+...|.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~  415 (447)
T d1pw4a_         336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  415 (447)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            233333444433333 333333333333344455667789999999999998887 456789999999999999999988


Q ss_pred             HHHHHHHHHHHHHHH
Q 007159          593 AVVLYIIGTLVWNLF  607 (615)
Q Consensus       593 ~~~~~l~~~l~~~~~  607 (615)
                      .+++++++.++...+
T Consensus       416 ~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         416 MIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777766655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.4e-25  Score=229.61  Aligned_cols=383  Identities=13%  Similarity=0.018  Sum_probs=244.7

Q ss_pred             HHHHHHHhhhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 007159          213 FSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (615)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~  291 (615)
                      .+.+++..+....+.+.+|. +.+++|+|..++|++.+++.++..++++++|+++||+|||++++++.++..++.++..+
T Consensus        13 ~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33444455555666777776 56779999999999999999999999999999999999999999999888888877766


Q ss_pred             hhccC--hHHHHHHHHHHHhhhcchhhHHHHHhhhcccc--cchhhHHHHHHHHHHHHHHHHhhhHhhhhcCCCchHHHH
Q 007159          292 AARIG--LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (615)
Q Consensus       292 ~~~~~--~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~ig~~l~~~l~~~~gw~~~f~  367 (615)
                      .....  ....++.+++.+.+.+...........+..++  +++....+........+..+++.+++.+.+. +|++.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  171 (417)
T d1pv7a_          93 FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFW  171 (417)
T ss_dssp             HTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-ccccccc
Confidence            55211  12234455555555555555554444444332  3445667778888889999999999988764 5566666


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhhhhcCCccccccccccHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007159          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM  447 (615)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  447 (615)
                      .......+..++.....++.+.+.++.++++...        ............+++..+......+.............
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T d1pv7a_         172 LGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF  243 (417)
T ss_dssp             HHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------CCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------ccccccccccccccccccchhhhhHHHHHHHHhhhccc
Confidence            5555555555555554444443333222221110        11111122333444444444444333333333333333


Q ss_pred             HHHHHH---HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 007159          448 PTYYNQ---VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (615)
Q Consensus       448 p~~~~~---~~g~s~~~~g~~~~~~~i~~~ig~~l~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (615)
                      +.+...   ..+.+....+.......++..++..+.+++.||.++++...         ++.++.++........+..+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  314 (417)
T d1pv7a_         244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL---------LAGTIMSVRIIGSSFATSALE  314 (417)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHH---------HHHHHHHHHHHHHHTCCCHHH
T ss_pred             cccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchh---------hhHHHHHHhhhccccccccch
Confidence            333322   22344556677777888888899999999999999885332         222222222333333344444


Q ss_pred             HH-HHHHHHhhhhhhhhhhhhhhhhccCcchhhHHHHHHH-HHHHHHHHHHHHHhhheeccCChhHHHHHHHHHHHHHHH
Q 007159          525 AV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL  602 (615)
Q Consensus       525 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gl~~-~~~~lg~~igp~l~G~l~~~~g~~~~f~~~~~~~l~~~l  602 (615)
                      .+ ..++.+.+.....+.......+..+++.||++.|+.. ....+|..++|.+.|++.|..|++.+|++.++++++..+
T Consensus       315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~  394 (417)
T d1pv7a_         315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL  394 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            43 3344444444444455555666788899999999864 556799999999999999999999999999988888887


Q ss_pred             HHHHHhcCCcc
Q 007159          603 VWNLFATGERV  613 (615)
Q Consensus       603 ~~~~~~~~~k~  613 (615)
                      +..+..++++.
T Consensus       395 ~~~~~l~~~~~  405 (417)
T d1pv7a_         395 ISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHSCCSSC
T ss_pred             HHHHhhcCCCc
Confidence            77666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.1e-13  Score=141.68  Aligned_cols=154  Identities=8%  Similarity=0.015  Sum_probs=133.7

Q ss_pred             HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhc
Q 007159          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG  312 (615)
Q Consensus       233 i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~~~l~~~~~~~~~~~ll~~r~l~G~~~~  312 (615)
                      ..++.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.+  +.+.+++..++.|++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVP  327 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHHHHH
Confidence            3444455667788888999999999999999999999999999999999999999888887  78888999999999999


Q ss_pred             chhhHHHHHhhhcccccchhhHHHHH-HHHHHHHHHHHhhhHhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007159          313 VAMPAMNNMLSKWIPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP  388 (615)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  388 (615)
                      ...+...+++.+.+|+++|+++.++. +....+|.+++|.++|++.+.+||++.|++.+++.++..++..+..++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999985 45677999999999999999999999999988887777666665555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.8e-12  Score=134.97  Aligned_cols=163  Identities=13%  Similarity=0.067  Sum_probs=123.3

Q ss_pred             hhhhHHHHhHHH-HHhhcCCCchhhHHHHHHHHHHHHHHHHhhHHhhhhcCCchHHHHHHHHHHHH---HHHHHhhhccC
Q 007159          221 MDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA---TVLTPVAARIG  296 (615)
Q Consensus       221 ~~~~~~~~~~~~-i~~~~g~s~~~~g~i~s~~~l~~~l~~~~~G~l~Dr~Grk~~l~~~~~l~~i~---~~l~~~~~~~~  296 (615)
                      ..........+. +.+.++.+..+.++..++..++..++.++.|++.||+++++......++..+.   .++.......+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (447)
T d1pw4a_         263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN  342 (447)
T ss_dssp             HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             hhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccccc
Confidence            333334444444 56678999999999999999999999999999999999876544443333322   22222223335


Q ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHhhhcccccchhhHHHHHHHHHHH-HHHHHhhhHhhhhcCCCchHHHHHHHHHHHH
Q 007159          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (615)
Q Consensus       297 ~~~ll~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  375 (615)
                      .+..+++.++.|++.+...+....+..+.+|++.|++++|+.+....+ |.+++|.+.|++.+.+||+..|++.+++.++
T Consensus       343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  422 (447)
T d1pw4a_         343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  422 (447)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            667777888889998888899999999999999999999999887776 5677899999999999999999887766665


Q ss_pred             HHHHHHhh
Q 007159          376 WFALWLKK  383 (615)
Q Consensus       376 ~~~~~~~~  383 (615)
                      ..++....
T Consensus       423 ~~~~~~~~  430 (447)
T d1pw4a_         423 AVILLIVV  430 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443