Citrus Sinensis ID: 007176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPKLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKKSQKTSNGY
cccccEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccccEEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHccccccHHHHHHHHHHHcccEEcccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccccc
cccccEEEEEcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEEEEEccccccccccccccccccccHcccccccccccccccHHHccccccccccEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccEEEEEEEEccccccEEEEEEEccHHHHccHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEcccccEEEEEEEcHHHHHHHHHHHcccccHHHHHHHEEEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHccHHHHccHHHcHHHHHHHHHHccccEccccccccccHcHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEcccccccHccccccccccccHHHcccccccEEEcccccccccccccccccccc
MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNivmasnsqkgssklgphllgdppkidialsemdvqgeenspenlpaikiydddvtMRFLVCGvpctldtsllgpleDGLNALLNIEIRgsklhnrtsapppplqagafsrgVVTMrcdlstcssAHISLLVSgsaqtcfnDQLLENHIKneliensqlvhalpnsgdnrlppseprksasiacGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQglsvasfeKDDAERLLFFCTrqgkadhtensvltrppswltspapsrkrsepcreskgvesenvcnvrpklnsaamrpiphtrhykmlpfsgfseierydgdqvkanlpvaplkhssagptpvthrkslsssyqaqqiislnplplkkhgcgrapiqvcseEEFLRDVMQFLILRghtrlvpqgglaefpDAILNAKRLDLFNLYREVVsrggfhvgnginwKGQVFSKMrnhtltnrmtgvgnTLKRHYETYLLEYELahddvdgeccllchssaagdwvncgicgewahfgcdrrqglgafkdyaktdgleyvcpqcsvtnfkkksqktsngy
MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTrqgkadhtensvltrppswltspapsrkrsepcreskgvesenvcnvrpklnsaamrpiphtrhYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRggfhvgnginwKGQVFSKMRNhtltnrmtgvgntLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLeyvcpqcsvtnfkkksqktsngy
MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPKLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKKSQKTSNGY
***VPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVM*****************************************PAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRG****************GAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLV*********************IACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQ***********************************************************TRHYKMLPFSGFSEIERY*************************************QIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN************
*QGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNI***********KLGPHLLGDPPKI********************AIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSA*PPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQ***********************IACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKAD***********************************************************************************************************************************VCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS***************
MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNS***************IACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKADHTENSVLTRPPS*************************VCNVRPKLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKH*******************AQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF***********
*QGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMAS*****SSKLGPHLLGDPPKIDIALSEMD******SPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPN*********EPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKADHTENSVLTRPPSWLT***************************************************F*******************************************QIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF***********
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MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMASNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVPCTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACGASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTRQGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPKLNSAAMRPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKKSQKTSNGY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query614 2.2.26 [Sep-21-2011]
Q6NQ79747 AT-rich interactive domai yes no 0.991 0.815 0.753 0.0
>sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana GN=ARID4 PE=2 SV=1 Back     alignment and function desciption
 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/613 (75%), Positives = 527/613 (85%), Gaps = 4/613 (0%)

Query: 2   QGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMAS 61
           +GV YVIYWK+ FS YAACHF  +L SV+QSSCS TWD F +A ASFRLYC  +N V+ S
Sbjct: 133 KGVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHVAEASFRLYCTSDNAVLPS 192

Query: 62  NS-QKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVP 120
           NS +K + ++GP LLG+PPKID+   E D   EENS E+LP+IKIYD+DVT+RFL+CG P
Sbjct: 193 NSNRKMNYEMGPCLLGEPPKIDVVSPEADELEEENSLESLPSIKIYDEDVTVRFLLCGPP 252

Query: 121 CTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSS 180
           CT+DT LLG L DGLNALL IE+RGSKLHNR+SAP PPLQAG F+RGVVTMRCD+STCSS
Sbjct: 253 CTVDTFLLGSLMDGLNALLRIEMRGSKLHNRSSAPAPPLQAGTFTRGVVTMRCDVSTCSS 312

Query: 181 AHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACG 240
           AHIS+LVSG+AQTCF+DQLLENHIK+E++E  QLVH++ NS + +   SEPR+SASIACG
Sbjct: 313 AHISMLVSGNAQTCFSDQLLENHIKHEVVEKIQLVHSVVNSEETKRGFSEPRRSASIACG 372

Query: 241 ASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTR 300
           ASV EVSM+V TWA QVLRQLAPDVSYRSLV+LG+ASIQGLSVASFEKDDAERLLFFC +
Sbjct: 373 ASVCEVSMQVPTWALQVLRQLAPDVSYRSLVVLGVASIQGLSVASFEKDDAERLLFFCGQ 432

Query: 301 QGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPKLNSAAMRPIPH 360
           Q       +++L++ P+WLT P P+RKRSEPCRESK  E EN      K+N AA+RPIPH
Sbjct: 433 QINDTSNHDALLSKIPNWLTPPLPTRKRSEPCRESK--EIENGGPTSRKINVAALRPIPH 490

Query: 361 TRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISL 420
           TR +KM+PFSG+SEI R+DGD  K +LP+ P KH ++G TPVTHRK+ S SYQ +QIISL
Sbjct: 491 TRRHKMIPFSGYSEIGRFDGDHTKGSLPMPP-KHGASGGTPVTHRKAFSGSYQRKQIISL 549

Query: 421 NPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDL 480
           NPLPLKKH CGRA IQVCSEEEFLRDVMQFL++RGHTRLVP GGLAEFPDA+LN+KRLDL
Sbjct: 550 NPLPLKKHDCGRAHIQVCSEEEFLRDVMQFLLIRGHTRLVPPGGLAEFPDAVLNSKRLDL 609

Query: 481 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAH 540
           FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE AH
Sbjct: 610 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYEYAH 669

Query: 541 DDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600
           DDVDGECCL+C SS AGDWVNCG CGEWAHFGCDRR GLGAFKDYAKTDGLEYVCP CSV
Sbjct: 670 DDVDGECCLICRSSTAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGLEYVCPNCSV 729

Query: 601 TNFKKKSQKTSNG 613
           +N++KKSQKTSNG
Sbjct: 730 SNYRKKSQKTSNG 742

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query614
255550299 749 DNA binding protein, putative [Ricinus c 1.0 0.819 0.849 0.0
224141545 745 predicted protein [Populus trichocarpa] 0.996 0.821 0.841 0.0
225444591 739 PREDICTED: AT-rich interactive domain-co 0.986 0.820 0.809 0.0
297742936 746 unnamed protein product [Vitis vinifera] 0.998 0.821 0.785 0.0
356530473 752 PREDICTED: uncharacterized protein LOC10 0.996 0.813 0.756 0.0
356556430 750 PREDICTED: uncharacterized protein LOC10 0.996 0.816 0.750 0.0
42565391 747 ARID/BRIGHT DNA-binding domain-containin 0.991 0.815 0.753 0.0
297818776 748 ARID/BRIGHT DNA-binding domain-containin 0.991 0.814 0.752 0.0
7649364 717 putative protein [Arabidopsis thaliana] 0.946 0.810 0.712 0.0
357514291 769 Fiber protein Fb21 [Medicago truncatula] 0.993 0.793 0.674 0.0
>gi|255550299|ref|XP_002516200.1| DNA binding protein, putative [Ricinus communis] gi|223544686|gb|EEF46202.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1092 bits (2823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/619 (84%), Positives = 556/619 (89%), Gaps = 5/619 (0%)

Query: 1   MQGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMA 60
            +GVPYVIYWK +FSCYAA HF QALLSVVQSSCSHT DAFQLAHASF LYCVRNN  ++
Sbjct: 131 FKGVPYVIYWKSTFSCYAAAHFRQALLSVVQSSCSHTCDAFQLAHASFSLYCVRNNTGLS 190

Query: 61  SNSQKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVP 120
           SN+QK   K GP LLG+PPKIDI L E DVQ EE+S   LPAIKIYDDDVTMRFLVC +P
Sbjct: 191 SNNQKVGGKPGPRLLGEPPKIDITLPEADVQDEESSSGTLPAIKIYDDDVTMRFLVCELP 250

Query: 121 CTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSS 180
            TLD  LLG LEDGLNALLNIEIRGSKLHNRTSAPPPPLQAG FSRGVVTMRCDLSTCSS
Sbjct: 251 STLDACLLGSLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGTFSRGVVTMRCDLSTCSS 310

Query: 181 AHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACG 240
           AHISLLVSGSAQ CFNDQLLENHIKNELIENSQLVHALP+S +++L  SEPRKSASI CG
Sbjct: 311 AHISLLVSGSAQACFNDQLLENHIKNELIENSQLVHALPSSEESKLLTSEPRKSASIGCG 370

Query: 241 ASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTR 300
           ASVFEV +KV +WASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEK+D ERLLFFCTR
Sbjct: 371 ASVFEVCLKVPSWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKEDTERLLFFCTR 430

Query: 301 QGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRE-----SKGVESENVCNVRPKLNSAAM 355
           QGK  +  NS++ +PP WL  PAPSRKRSEPCRE     SKG+E EN  +V+ KLN AAM
Sbjct: 431 QGKELYPNNSIIIKPPCWLIPPAPSRKRSEPCRETKLFTSKGLERENGGSVKQKLNVAAM 490

Query: 356 RPIPHTRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQ 415
           RPIPHTRH+KMLPFSGF+E ERYDGDQ K +LPVAP KH   GP PV+HRKSLSSSYQAQ
Sbjct: 491 RPIPHTRHHKMLPFSGFAEGERYDGDQGKPSLPVAPAKHGVVGPAPVSHRKSLSSSYQAQ 550

Query: 416 QIISLNPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNA 475
           QIISLNPLPLKKHGCGRAPIQ CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNA
Sbjct: 551 QIISLNPLPLKKHGCGRAPIQACSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNA 610

Query: 476 KRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535
           KRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE
Sbjct: 611 KRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 670

Query: 536 YELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVC 595
           YELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEY+C
Sbjct: 671 YELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYIC 730

Query: 596 PQCSVTNFKKKSQKTSNGY 614
           P CS+ NF+KKSQKT+NGY
Sbjct: 731 PHCSIANFRKKSQKTANGY 749

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141545|ref|XP_002324130.1| predicted protein [Populus trichocarpa] gi|222865564|gb|EEF02695.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444591|ref|XP_002277324.1| PREDICTED: AT-rich interactive domain-containing protein 4 [Vitis vinifera] gi|297738501|emb|CBI27746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742936|emb|CBI35803.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530473|ref|XP_003533805.1| PREDICTED: uncharacterized protein LOC100808357 [Glycine max] Back     alignment and taxonomy information
>gi|356556430|ref|XP_003546529.1| PREDICTED: uncharacterized protein LOC100775894 [Glycine max] Back     alignment and taxonomy information
>gi|42565391|ref|NP_189910.2| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] gi|75223288|sp|Q6NQ79.1|ARID4_ARATH RecName: Full=AT-rich interactive domain-containing protein 4; Short=ARID domain-containing protein 4 gi|34849889|gb|AAQ82841.1| At3g43240 [Arabidopsis thaliana] gi|332644257|gb|AEE77778.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297818776|ref|XP_002877271.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323109|gb|EFH53530.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7649364|emb|CAB89045.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357514291|ref|XP_003627434.1| Fiber protein Fb21 [Medicago truncatula] gi|355521456|gb|AET01910.1| Fiber protein Fb21 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query614
TAIR|locus:2084731747 AT3G43240 [Arabidopsis thalian 0.991 0.815 0.753 9.4e-256
TAIR|locus:2084731 AT3G43240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2462 (871.7 bits), Expect = 9.4e-256, P = 9.4e-256
 Identities = 462/613 (75%), Positives = 527/613 (85%)

Query:     2 QGVPYVIYWKHSFSCYAACHFLQALLSVVQSSCSHTWDAFQLAHASFRLYCVRNNIVMAS 61
             +GV YVIYWK+ FS YAACHF  +L SV+QSSCS TWD F +A ASFRLYC  +N V+ S
Sbjct:   133 KGVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHVAEASFRLYCTSDNAVLPS 192

Query:    62 NS-QKGSSKLGPHLLGDPPKIDIALSEMDVQGEENSPENLPAIKIYDDDVTMRFLVCGVP 120
             NS +K + ++GP LLG+PPKID+   E D   EENS E+LP+IKIYD+DVT+RFL+CG P
Sbjct:   193 NSNRKMNYEMGPCLLGEPPKIDVVSPEADELEEENSLESLPSIKIYDEDVTVRFLLCGPP 252

Query:   121 CTLDTSLLGPLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDLSTCSS 180
             CT+DT LLG L DGLNALL IE+RGSKLHNR+SAP PPLQAG F+RGVVTMRCD+STCSS
Sbjct:   253 CTVDTFLLGSLMDGLNALLRIEMRGSKLHNRSSAPAPPLQAGTFTRGVVTMRCDVSTCSS 312

Query:   181 AHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALPNSGDNRLPPSEPRKSASIACG 240
             AHIS+LVSG+AQTCF+DQLLENHIK+E++E  QLVH++ NS + +   SEPR+SASIACG
Sbjct:   313 AHISMLVSGNAQTCFSDQLLENHIKHEVVEKIQLVHSVVNSEETKRGFSEPRRSASIACG 372

Query:   241 ASVFEVSMKVSTWASQVLRQLAPDVSYRSLVMLGIASIQGLSVASFEKDDAERLLFFCTR 300
             ASV EVSM+V TWA QVLRQLAPDVSYRSLV+LG+ASIQGLSVASFEKDDAERLLFFC +
Sbjct:   373 ASVCEVSMQVPTWALQVLRQLAPDVSYRSLVVLGVASIQGLSVASFEKDDAERLLFFCGQ 432

Query:   301 QGKADHTENSVLTRPPSWLTSPAPSRKRSEPCRESKGVESENVCNVRPKLNSAAMRPIPH 360
             Q       +++L++ P+WLT P P+RKRSEPCRESK  E EN      K+N AA+RPIPH
Sbjct:   433 QINDTSNHDALLSKIPNWLTPPLPTRKRSEPCRESK--EIENGGPTSRKINVAALRPIPH 490

Query:   361 TRHYKMLPFSGFSEIERYDGDQVKANLPVAPLKHSSAGPTPVTHRKSLSSSYQAQQIISL 420
             TR +KM+PFSG+SEI R+DGD  K +LP+ P KH ++G TPVTHRK+ S SYQ +QIISL
Sbjct:   491 TRRHKMIPFSGYSEIGRFDGDHTKGSLPMPP-KHGASGGTPVTHRKAFSGSYQRKQIISL 549

Query:   421 NPLPLKKHGCGRAPIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDL 480
             NPLPLKKH CGRA IQVCSEEEFLRDVMQFL++RGHTRLVP GGLAEFPDA+LN+KRLDL
Sbjct:   550 NPLPLKKHDCGRAHIQVCSEEEFLRDVMQFLLIRGHTRLVPPGGLAEFPDAVLNSKRLDL 609

Query:   481 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAH 540
             FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE AH
Sbjct:   610 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYEYAH 669

Query:   541 DDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600
             DDVDGECCL+C SS AGDWVNCG CGEWAHFGCDRR GLGAFKDYAKTDGLEYVCP CSV
Sbjct:   670 DDVDGECCLICRSSTAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGLEYVCPNCSV 729

Query:   601 TNFKKKSQKTSNG 613
             +N++KKSQKTSNG
Sbjct:   730 SNYRKKSQKTSNG 742


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      614       614   0.00088  120 3  11 22  0.39    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  365 KB (2181 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  53.52u 0.78s 54.30t   Elapsed:  00:00:03
  Total cpu time:  53.52u 0.78s 54.30t   Elapsed:  00:00:03
  Start:  Tue May 21 07:12:53 2013   End:  Tue May 21 07:12:56 2013
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NQ79ARID4_ARATHNo assigned EC number0.75360.99180.8152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query614
smart0101488 smart01014, ARID, ARID/BRIGHT DNA binding domain 2e-17
pfam0138890 pfam01388, ARID, ARID/BRIGHT DNA binding domain 2e-10
smart0050193 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interac 1e-05
>gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information 
 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 440 EEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFH-VGNG 498
            E FL  + +F+  RG                ++  K LDL+ LYR V  RGGF  V   
Sbjct: 3   RELFLDRLRKFMEKRGTPLDKIP---------VIGGKPLDLYRLYRAVQKRGGFDKVTKK 53

Query: 499 INWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYE 537
             WK QV  ++    +    T  G +L++HYE YLL YE
Sbjct: 54  KKWK-QVARELG---IPPSATSAGTSLRKHYEKYLLPYE 88

Members of the recently discovered ARID (AT-rich interaction domain) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. Length = 88
>gnl|CDD|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information
>gnl|CDD|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 614
smart0050193 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) 99.86
PF0138892 ARID: ARID/BRIGHT DNA binding domain; InterPro: IP 99.82
KOG2744 512 consensus DNA-binding proteins Bright/BRCAA1/RBP1 99.66
KOG2510532 consensus SWI-SNF chromatin-remodeling complex pro 98.84
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.4
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.26
KOG1973274 consensus Chromatin remodeling protein, contains P 97.95
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.52
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 97.06
KOG1244336 consensus Predicted transcription factor Requiem/N 96.93
KOG4299 613 consensus PHD Zn-finger protein [General function 96.61
KOG1512381 consensus PHD Zn-finger protein [General function 96.1
KOG0957707 consensus PHD finger protein [General function pre 95.63
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 95.62
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 95.34
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 95.18
KOG0383 696 consensus Predicted helicase [General function pre 94.99
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 93.46
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 92.59
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 92.52
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 90.45
COG5141 669 PHD zinc finger-containing protein [General functi 89.55
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 83.52
KOG1844 508 consensus PHD Zn-finger proteins [General function 82.87
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information 
Probab=99.86  E-value=5.2e-22  Score=170.30  Aligned_cols=90  Identities=30%  Similarity=0.553  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCC
Q 007176          438 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN  516 (614)
Q Consensus       438 ~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~  516 (614)
                      ++.++|+++|++||+.+|+++..         .|+|+|++||||+||++|+++|||++|+. ++|. +|+++|+   ++.
T Consensus         1 ~~~~~F~~~L~~F~~~~g~~~~~---------~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~-~Va~~lg---~~~   67 (93)
T smart00501        1 RERVLFLDRLYKFMEERGSPLKK---------IPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWK-EIARELG---IPD   67 (93)
T ss_pred             CcHHHHHHHHHHHHHHcCCcCCc---------CCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHH-HHHHHhC---CCc
Confidence            35789999999999999998533         47999999999999999999999999965 5799 9999998   566


Q ss_pred             ccccHHHHHHHHHHHhhhhhhccc
Q 007176          517 RMTGVGNTLKRHYETYLLEYELAH  540 (614)
Q Consensus       517 t~Tsag~~LK~hYERyLleYE~ah  540 (614)
                      +++++++.||++|+|||++||..+
T Consensus        68 ~~~~~~~~lk~~Y~k~L~~yE~~~   91 (93)
T smart00501       68 TSTSAASSLRKHYERYLLPFERFL   91 (93)
T ss_pred             ccchHHHHHHHHHHHHhHHHHHHh
Confidence            689999999999999999999864

DNA-binding domain containing a helix-turn-helix structure
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans Back     alignment and domain information
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription] Back     alignment and domain information
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query614
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 1e-17
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 8e-17
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 4e-16
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 9e-16
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 1e-15
2lm1_A107 Lysine-specific demethylase LID; structural genomi 4e-15
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 9e-15
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 5e-13
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 8e-13
2kk0_A145 AT-rich interactive domain-containing protein 3A; 3e-12
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2k16_A75 Transcription initiation factor TFIID subunit 3; p 8e-05
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 4e-04
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 7e-04
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 7e-04
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Length = 96 Back     alignment and structure
 Score = 77.6 bits (191), Expect = 1e-17
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 433 APIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGG 492
            P+      +FL  + +F  L+G T  +P           +  K LDL+ L + V S+GG
Sbjct: 1   GPLGSRVRLDFLDQLAKFWELQGSTLKIPV----------VERKILDLYALSKIVASKGG 50

Query: 493 FHVGNGIN-WKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYEL 538
           F +      W  +V S++          G G+ LK HYE  L  YEL
Sbjct: 51  FEMVTKEKKWS-KVGSRLG----YLPGKGTGSLLKSHYERILYPYEL 92
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Length = 121 Back     alignment and structure
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Length = 107 Back     alignment and structure
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 122 Back     alignment and structure
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Length = 117 Back     alignment and structure
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Length = 107 Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Length = 125 Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Length = 128 Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Length = 123 Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 145 Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query614
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 99.87
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 99.86
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 99.86
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 99.85
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 99.85
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 99.85
2kk0_A145 AT-rich interactive domain-containing protein 3A; 99.84
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 99.84
2lm1_A107 Lysine-specific demethylase LID; structural genomi 99.83
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 99.82
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 99.8
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.05
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.83
1we9_A64 PHD finger family protein; structural genomics, PH 98.82
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 98.82
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.81
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.77
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.76
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.71
1weu_A91 Inhibitor of growth family, member 4; structural g 98.71
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.67
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.67
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.65
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.64
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.63
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.63
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.62
2yt5_A66 Metal-response element-binding transcription facto 98.6
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.59
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.57
1wem_A76 Death associated transcription factor 1; structura 98.56
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 98.56
3o70_A68 PHD finger protein 13; PHF13, structural genomics 98.56
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.55
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 98.54
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.54
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.53
1wee_A72 PHD finger family protein; structural genomics, PH 98.5
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 98.49
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 98.49
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.46
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.46
1wew_A78 DNA-binding family protein; structural genomics, P 98.45
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 98.45
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.45
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.44
3o36_A 184 Transcription intermediary factor 1-alpha; TRIM24, 98.44
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.39
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.34
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.32
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 98.32
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 98.31
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.29
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.29
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.26
2ro1_A 189 Transcription intermediary factor 1-beta; KAP, TIF 98.2
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.14
3kv5_D 488 JMJC domain-containing histone demethylation prote 98.11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.08
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.06
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 97.79
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 97.79
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.39
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 97.17
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 96.63
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 96.53
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 96.5
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 96.03
1wil_A89 KIAA1045 protein; ring finger domain, structural g 95.91
3rsn_A 177 SET1/ASH2 histone methyltransferase complex subun; 91.55
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Back     alignment and structure
Probab=99.87  E-value=5.7e-23  Score=185.53  Aligned_cols=91  Identities=20%  Similarity=0.311  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCc
Q 007176          439 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR  517 (614)
Q Consensus       439 ~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t  517 (614)
                      ..++||++|.+||++||+|+.         +.|+|+|++||||+||+.|+++|||++|++ ++|+ +|+..|+   ++.+
T Consensus        12 ~~~~Fl~~L~~F~~~rGtpl~---------~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~-~Va~~lg---~p~~   78 (121)
T 2rq5_A           12 PNVQRLACIKKHLRSQGITMD---------ELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWN-KLADMLR---IPKT   78 (121)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCS---------SCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHH-HHHHHTC---CCTT
T ss_pred             CcHHHHHHHHHHHHHcCCCCC---------CCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHH-HHHHHhC---CCCC
Confidence            478999999999999999964         257999999999999999999999999955 5899 9999998   6778


Q ss_pred             cccHHHHHHHHHHHhhhhhhccccc
Q 007176          518 MTGVGNTLKRHYETYLLEYELAHDD  542 (614)
Q Consensus       518 ~Tsag~~LK~hYERyLleYE~ahdD  542 (614)
                      +|++++.||+||+|||++||...++
T Consensus        79 ~~sa~~~Lr~~Y~k~L~~YE~~~~~  103 (121)
T 2rq5_A           79 AQDRLAKLQEAYCQYLLSYDSLSPE  103 (121)
T ss_dssp             CSSHHHHHHHHHHTTHHHHHHCCHH
T ss_pred             cCcHHHHHHHHHHHHhHHHHCcCHH
Confidence            8999999999999999999997654
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Back     alignment and structure
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Back     alignment and structure
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Back     alignment and structure
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 614
d1ryua_120 a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 2e-16
d1ig6a_107 a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo 1e-15
d1kkxa_102 a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) { 2e-15
d1c20a_128 a.4.3.1 (A:) DNA-binding domain from the dead ring 1e-14
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 0.003
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: SWI-SNF complex protein p270, SMARCF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 440 EEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGF-HVGNG 498
            + ++   + F   +          +   P   +  K LDL+ LY  V   GG   V   
Sbjct: 21  RKMWVDRYLAFTEEKAMG-------MTNLP--AVGRKPLDLYRLYVSVKEIGGLTQVNKN 71

Query: 499 INWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHD 541
             W+ ++ + +   T ++      ++LK+ Y   L  +E   +
Sbjct: 72  KKWR-ELATNLNVGTSSS----AASSLKKQYIQCLYAFECKIE 109
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 102 Back     information, alignment and structure
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query614
d1ig6a_107 MRF-2 DNA-binding domain {Human (Homo sapiens) [Ta 99.86
d1ryua_120 SWI-SNF complex protein p270, SMARCF1 {Human (Homo 99.84
d1c20a_128 DNA-binding domain from the dead ringer protein {F 99.83
d1kkxa_102 Transcription regulator Adr6 (Swi1) {Baker's yeast 99.8
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.79
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.68
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.65
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.61
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.56
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.54
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.29
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.29
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.22
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.13
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.12
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 89.64
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 88.41
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: MRF-2 DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-23  Score=179.81  Aligned_cols=89  Identities=21%  Similarity=0.424  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCc
Q 007176          439 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR  517 (614)
Q Consensus       439 ~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t  517 (614)
                      +++.||++|++||++||+++..         .|+|+||+||||+||.+|+++|||++|++ ++|. +|+++|+   ++..
T Consensus         3 e~~~Fl~~L~~F~~~rg~~~~~---------~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~-~ia~~lg---~~~~   69 (107)
T d1ig6a_           3 DEQAFLVALYKYMKERKTPIER---------IPYLGFKQINLWTMFQAAQKLGGYETITARRQWK-HIYDELG---GNPG   69 (107)
T ss_dssp             HHHHHHHHHHHHHHTTTCCGGG---------CCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHH-HHHHHHT---CCTT
T ss_pred             cHHHHHHHHHHHHHHcCCCCCc---------CCeECCccccHHHHHHHHHHhCChhhccccccHH-HHHHHhC---CCCC
Confidence            5799999999999999999532         57999999999999999999999999966 4699 9999998   5677


Q ss_pred             cccHHHHHHHHHHHhhhhhhccc
Q 007176          518 MTGVGNTLKRHYETYLLEYELAH  540 (614)
Q Consensus       518 ~Tsag~~LK~hYERyLleYE~ah  540 (614)
                      +|++++.||++|++||++||..+
T Consensus        70 ~~~~~~~Lk~~Y~~~L~~yE~~~   92 (107)
T d1ig6a_          70 STSAATCTRRHYERLILPYERFI   92 (107)
T ss_dssp             CTTTTTTHHHHHHHHTTTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999976
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure