Citrus Sinensis ID: 007182

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----

MYEAILVEQPNDAVCGNIKKKKAEEDNNTNNTKGHTVTDLKPAVPSLPVGGRSRSQSATRRVTPTTIATPTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSDGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGSNGKEQNLVVTSRKRSSVDGARASLNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK

cHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccEEEEEEcccccccEEEEEcccccEEEEEEccccccEEEEEEEccccEEEEEEccccccEEEEEEEccccEEEEEEEcccccccEEEEEccccEEEEEEEccEEEEEEEEEEccccEEEEEEEccccccEEEEEcccccEEEEEEEccccccEEEccccEEEEcccccccccEEEEEEEccccccccccccccEEEccEEEEcccccccccccccccccccccEEccccEEEcccccccccccccccccccccccEEEEccccHHHHHHccccEEEEEcccccccccccccccccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHcccccccHHHHccccccccccccccccEEEEEEEcccEEEEEEcccHHHHHHHHHcHHHHHHHHHcccccccccEEEEEEEEcccEEEEEEEEccccccccccEEcccccccccccccccccccccccccEEccccccEEcccHHHHHHHHc

ccEEEEEEcccccEEcccEEcccccccccccccccEEEEcccccccccccccccccccEEEcEEcccccccccEEccccccEcccccccccccccEEEEcccccEEEEEEccccccccEEEEEccccEEEcEEccccccccEEEEcccccEEEEEEccccccccEEEEcccccEEEEEEEcccccccEEEEEcccccEccEEccccccccEEEEEccccEEEEEEcccEEcccEEEEEccccccccccccccccccEEEEEccccEEEEEEccccccccEEEccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHEEcEEEEccccccccHHccHHcccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHcccccccEEEEEEccccEEHHHHcHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEcccccccEEEEEEEEcccccccccccccHHHccccccccccccccEEcccHHHHHHHHc

MYEAIlveqpndavcgnikkkkaeednntnntkghtvtdlkpavpslpvggrsrsqsatrrvtpttiatptleisgratsstngtgtvgtgtgavtekalpngdlyigsfvgnaphgsgkylwtdgcmyegewrrgkasgkgkfswpsgatyegefksgrmegfgtftgsdgdtyrgawssdrkhgygekryangdvyegcwkknlqdgqgryvwkngneyvgewkngvisgrgtliwangnkyegqwengtpkgsgvftwpdgscyigtwnisskdVKLQQlngtyyhgsngkeqnLVVTSRKrssvdgaraslnekniifpriciwesdgeagditcDIIDNVEASMiyegfgfdidrdgirqfrrspccfngevkkpgqtiskghKNYELMLNLQLGIRYSVGKHASilrdlkpsdfdpkekywtrfapegskitpphqsvefrwkdycPMVFRHLRELFQVDPANYMLAICGDdalrelsspgksgsffyvtqddrfMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYgvhcvkpiggqktRFIVMGNlfcsdyrihrrfdlkgsshgrttdkpveeidetttlkdldlnFVFRLQRNWYQELMK

myeailveqpndavcgnikkkkaeednntnntkghtvtdlkpavpslpvggrsrsqsatrrvtpttiatptleisgratsstngtgtvgTGTGAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGkasgkgkfswpsgatyegefksgrmEGFGTftgsdgdtyrgawssdrkhgygekryangdvyEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTyyhgsngkeqnlvVTSRKRSSVdgaraslnekniifpRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCcfngevkkpgqtiskghkNYELMLNLQLGIRYSVGKHASilrdlkpsdfdpKEKYWTrfapegskitpphqsvefRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRfdlkgsshgrttdkpveeidetttlkdldlnfvFRLQRNWYQELMK

MYEAILVEQPNDAVCGNIKKKKAEEDNNTNNTKGHTVTDLKPAVPSLPVGGRSRSQSATRRVTPTTIATPTLEISGRatsstngtgtvgtgtgavtEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEgfgtftgsdgdtYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGSNGKEQNLVVTSRKRSSVDGARASLNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK

********************************************************************************************GAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYE*********GFGTFTGSDGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHG************************LNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPE***ITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELS***KSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDL*****************ETTTLKDLDLNFVFRLQRNWYQ****

*********************************************************************PTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSDGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGSNGKEQNLVVTSRKRSSVDGARASLNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGS**TPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSH***************TLKDLDLNFVFRLQRNWYQELMK

MYEAILVEQPNDAVCGNIKKKKAEEDNNTNNTKGHTVTDLKPAVPS*****************PTTIATPTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWR**********SWPSGATYEGEFKSGRMEGFGTFTGSDGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGSNGKEQN************GARASLNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK

MYEAILVEQPNDAVCGNIKKKK************HTVTDLKPAVPSLPVGGRSRSQSATRRVTPTTIATPTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSDGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHG****************************************************************************************KPGQTISKGHKNYELMLNLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSH*R***KPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		614	2.2.26 [Sep-21-2011]
Q56YP2		752	Phosphatidylinositol 4-ph	yes	no	0.855	0.698	0.75	0.0
Q8L796		754	Phosphatidylinositol 4-ph	no	no	0.916	0.746	0.692	0.0
O48709		705	Phosphatidylinositol 4-ph	no	no	0.833	0.726	0.594	0.0
Q9M1K2		779	Phosphatidylinositol 4-ph	no	no	0.824	0.649	0.555	1e-174
Q9SFB8		715	Phosphatidylinositol 4-ph	no	no	0.846	0.727	0.565	1e-172
Q9SLG9		772	Phosphatidylinositol 4-ph	no	no	0.817	0.650	0.539	1e-170
Q8L850		815	Phosphatidylinositol 4-ph	no	no	0.842	0.634	0.454	1e-139
Q6EX42		801	Phosphatidylinositol 4-ph	no	no	0.827	0.634	0.437	1e-134
Q9SUI2		754	Phosphatidylinositol 4-ph	no	no	0.825	0.672	0.451	1e-129
Q8RY89		769	Phosphatidylinositol 4-ph	no	no	0.804	0.642	0.431	1e-125

>sp\|Q56YP2\|PI5K1_ARATH Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1	Back alignment and function desciption

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/564 (75%), Positives = 473/564 (83%), Gaps = 39/564 (6%)

Query: 52  RSRSQSATRRVTPTTIATPTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSFV 111
           RSRSQ  TRRVTPT    P +++                      EK LPNGDLYIGSF 
Sbjct: 53  RSRSQGTTRRVTPT----PLVDV----------------------EKPLPNGDLYIGSFS 86

Query: 112 GNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSD 171
           G  PHGSGKYLW DGCMYEG+W+RGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTG+D
Sbjct: 87  GGFPHGSGKYLWKDGCMYEGDWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGAD 146

Query: 172 GDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVIS 231
           GDTYRG W +DRKHG+G+KRYANGD YEG W++NLQDG+GRYVW+NGN+Y GEW++GVIS
Sbjct: 147 GDTYRGTWVADRKHGHGQKRYANGDFYEGTWRRNLQDGRGRYVWRNGNQYTGEWRSGVIS 206

Query: 232 GRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGS 291
           G+G L+W NGN+YEG WENG PKG+GVFTW DGS  +G WN S+       +  +++   
Sbjct: 207 GKGLLVWPNGNRYEGLWENGIPKGNGVFTWSDGSSCVGAWNESN-------IMRSFF--- 256

Query: 292 NGKEQN-LVVTSRKRSSVDGARASLNEKNIIFPRICIWESDGEAGDITCDIIDNVEASMI 350
           NG E+N L+V +RKRSSVD    SL  + + FPRICIWESDGEAGDITCDIIDNVEASMI
Sbjct: 257 NGVEKNDLIVGNRKRSSVDSGAGSLGGEKV-FPRICIWESDGEAGDITCDIIDNVEASMI 315

Query: 351 YEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHAS 410
           Y      +DRDG RQF+++PC FNGE KKPGQTISKGHK Y+LMLNLQLGIRYSVGKHAS
Sbjct: 316 YRD-RISVDRDGFRQFKKNPCWFNGEAKKPGQTISKGHKKYDLMLNLQLGIRYSVGKHAS 374

Query: 411 ILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANY 470
           I+RDLK +DFDPKEK+WTRF PEG+K TPPHQSV+FRWKDYCP+VFR LRELFQVDPA Y
Sbjct: 375 IVRDLKQTDFDPKEKFWTRFPPEGTKTTPPHQSVDFRWKDYCPLVFRRLRELFQVDPAKY 434

Query: 471 MLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCRYEN 530
           MLAICG+DALRELSSPGKSGSFFY+TQDDRFMIKTVKKSEVKVLLRMLPSYY+HVC+YEN
Sbjct: 435 MLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLLRMLPSYYKHVCQYEN 494

Query: 531 SLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDET 590
           SLVT+FYGVHCVKP+GGQKTRFIVMGNLFCS+YRI RRFDLKGSSHGR+T KP  EIDET
Sbjct: 495 SLVTRFYGVHCVKPVGGQKTRFIVMGNLFCSEYRIQRRFDLKGSSHGRSTAKPEGEIDET 554

Query: 591 TTLKDLDLNFVFRLQRNWYQELMK 614
           TTLKDLDLNF FRLQRNWYQELMK
Sbjct: 555 TTLKDLDLNFSFRLQRNWYQELMK 578

Catalyzes the synthesis of phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4-bisphosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6EC: 8

>sp\|Q8L796\|PI5K2_ARATH Phosphatidylinositol 4-phosphate 5-kinase 2 OS=Arabidopsis thaliana GN=PIP5K2 PE=1 SV=2	Back alignment and function description

>sp\|O48709\|PI5K3_ARATH Phosphatidylinositol 4-phosphate 5-kinase 3 OS=Arabidopsis thaliana GN=PIP5K3 PE=4 SV=1	Back alignment and function description

>sp\|Q9M1K2\|PI5K4_ARATH Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1	Back alignment and function description

>sp\|Q9SFB8\|PI5K6_ARATH Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1	Back alignment and function description

>sp\|Q9SLG9\|PI5K5_ARATH Phosphatidylinositol 4-phosphate 5-kinase 5 OS=Arabidopsis thaliana GN=PIP5K5 PE=2 SV=1	Back alignment and function description

>sp\|Q8L850\|PI5K9_ARATH Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana GN=PIP5K9 PE=1 SV=2	Back alignment and function description

>sp\|Q6EX42\|PI5K1_ORYSJ Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Oryza sativa subsp. japonica GN=PIPK1 PE=2 SV=2	Back alignment and function description

>sp\|Q9SUI2\|PI5K7_ARATH Phosphatidylinositol 4-phosphate 5-kinase 7 OS=Arabidopsis thaliana GN=PIP5K7 PE=1 SV=1	Back alignment and function description

>sp\|Q8RY89\|PI5K8_ARATH Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		614
224084834		789	predicted protein [Populus trichocarpa]	0.962	0.749	0.751	0.0
225459461		770	PREDICTED: phosphatidylinositol-4-phosph	0.835	0.666	0.830	0.0
302141871		813	unnamed protein product [Vitis vinifera]	0.814	0.615	0.823	0.0
255545524		774	phosphatidylinositol-4-phosphate 5-kinas	0.951	0.754	0.741	0.0
224063146		733	predicted protein [Populus trichocarpa]	0.885	0.742	0.785	0.0
449466398		791	PREDICTED: phosphatidylinositol 4-phosph	0.980	0.761	0.720	0.0
449445134		786	PREDICTED: phosphatidylinositol 4-phosph	0.907	0.708	0.743	0.0
449521355		786	PREDICTED: phosphatidylinositol 4-phosph	0.907	0.708	0.742	0.0
15219152		752	phosphatidylinositol-4-phosphate 5-kinas	0.855	0.698	0.75	0.0
297845202		753	ATPIP5K1 [Arabidopsis lyrata subsp. lyra	0.855	0.697	0.75	0.0

>gi\|224084834\|ref\|XP_002307416.1\| predicted protein [Populus trichocarpa] gi\|222856865\|gb\|EEE94412.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/635 (75%), Positives = 519/635 (81%), Gaps = 44/635 (6%)

Query: 1   MYEAILVEQPNDAVCGNIKKKKAEEDNNTNNTKGHTVTDL---------KPAVPSLP-VG 50
           M E ++V++    V    KKK  E DN T N K      L         + A+P LP V 
Sbjct: 1   MREGLIVDEVTGVVSTTKKKKSGELDNTTTNNKQLDKVILLVADQDITKQAAIPPLPIVV 60

Query: 51  GRSRSQSATRRVTPTTIATPTLEISGRATSSTNGTGTVGTGTGAVTEKALPNGDLYIGSF 110
            R+RSQSATRRVTP T                    T  + +G   EK LPNGDLYIGSF
Sbjct: 61  SRARSQSATRRVTPATTVV-----------------TASSSSGTTVEKHLPNGDLYIGSF 103

Query: 111 VGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGS 170
            G+APHGSGKY+WTDGCMYEGEWRRGKASGKGKFSWPSGAT+EG FKSGRMEG GTF GS
Sbjct: 104 SGHAPHGSGKYIWTDGCMYEGEWRRGKASGKGKFSWPSGATFEGGFKSGRMEGPGTFIGS 163

Query: 171 DGDTYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVI 230
           +GDTYRG+WSSDRKHG+G+KRYANGD YEG WKKN QDGQGRYVWKNGNEYVGEWKNGVI
Sbjct: 164 EGDTYRGSWSSDRKHGHGQKRYANGDFYEGTWKKNFQDGQGRYVWKNGNEYVGEWKNGVI 223

Query: 231 SGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHG 290
           SGRG LIWANGN+Y+GQWENG PKG+GVFTWPDGSCYIG  N + KD+K QQLNGT+Y G
Sbjct: 224 SGRGVLIWANGNRYDGQWENGVPKGNGVFTWPDGSCYIGNLNNNIKDIKGQQLNGTFYPG 283

Query: 291 SNGKE-------QNLVVTS---RKRSSVDGARASLNEKNIIFPRICIWESDGEAGDITCD 340
            NGKE        +LV+T+   RKRSSVDG R S     + FPRICIWESDGEAGDITCD
Sbjct: 284 -NGKECCLKGNKSDLVLTATTTRKRSSVDGGRGS----GMNFPRICIWESDGEAGDITCD 338

Query: 341 IIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNG-EVKKPGQTISKGHKNYELMLNLQL 399
           I+DNVEA MIY   G  +DRDGIRQFRR+PCCF+G EVKKPG  ISKGHKNY+LMLNLQL
Sbjct: 339 IVDNVEAEMIYRD-GLGLDRDGIRQFRRAPCCFSGGEVKKPGLPISKGHKNYDLMLNLQL 397

Query: 400 GIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHL 459
           GIRYSVGKHA ILRDLKPSDFDPKEK+WTRF PEGSKITPPHQS +FRWKDYCP+VFR L
Sbjct: 398 GIRYSVGKHAQILRDLKPSDFDPKEKFWTRFPPEGSKITPPHQSSDFRWKDYCPVVFRRL 457

Query: 460 RELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLP 519
           RELFQVDPA+YMLAICG+DALRELSSPGKSGSFFY+TQDDRFMIKTVKKSEVKVL+RMLP
Sbjct: 458 RELFQVDPADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRMLP 517

Query: 520 SYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRT 579
           SYYQHVCRYENSLVTKF+GVHCVKPIGG KTRFIVMGNLFCS+YRIHRRFDLKGSSHGRT
Sbjct: 518 SYYQHVCRYENSLVTKFFGVHCVKPIGGPKTRFIVMGNLFCSEYRIHRRFDLKGSSHGRT 577

Query: 580 TDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK 614
            DKP  EIDETTTLKDLDLNFVFRLQRNW+QEL+K
Sbjct: 578 ADKPEGEIDETTTLKDLDLNFVFRLQRNWFQELIK 612

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225459461\|ref\|XP_002284379.1\| PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302141871\|emb\|CBI19074.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255545524\|ref\|XP_002513822.1\| phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis] gi\|223546908\|gb\|EEF48405.1\| phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224063146\|ref\|XP_002301013.1\| predicted protein [Populus trichocarpa] gi\|222842739\|gb\|EEE80286.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449466398\|ref\|XP_004150913.1\| PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1-like [Cucumis sativus] gi\|449522139\|ref\|XP_004168085.1\| PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449445134\|ref\|XP_004140328.1\| PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449521355\|ref\|XP_004167695.1\| PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|15219152|ref|NP_173617.1| phosphatidylinositol-4-phosphate 5-kinase 1 [Arabidopsis thaliana] gi|75218151|sp|Q56YP2.1|PI5K1_ARATH RecName: Full=Phosphatidylinositol 4-phosphate 5-kinase 1; Short=AtPIP5K1; AltName: Full=1-phosphatidylinositol 4-phosphate kinase 1; AltName: Full=Diphosphoinositide kinase 1; AltName: Full=PtdIns(4)P-5-kinase 1 gi|62319907|dbj|BAD93975.1| phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] gi|332192060|gb|AEE30181.1| phosphatidylinositol-4-phosphate 5-kinase 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297845202\|ref\|XP_002890482.1\| ATPIP5K1 [Arabidopsis lyrata subsp. lyrata] gi\|297336324\|gb\|EFH66741.1\| ATPIP5K1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		614
TAIR\|locus:2201108		752	PIP5K1 "phosphatidylinositol-4	0.824	0.672	0.768	2.1e-228
TAIR\|locus:2203211		754	PIP5K2 "phosphatidylinositol-4	0.825	0.672	0.758	4e-225
TAIR\|locus:2066246		705	PIP5K3 "1-phosphatidylinositol	0.791	0.689	0.617	4.6e-176
TAIR\|locus:2077397		715	PIP5K6 "phosphatidylinositol-4	0.441	0.379	0.655	1.5e-164
TAIR\|locus:2085074		815	PIP5K9 "phosphatidyl inositol	0.385	0.290	0.625	3.1e-138
TAIR\|locus:2080585		779	PIP5K4 "phosphatidyl inositol	0.820	0.646	0.483	1.5e-124
TAIR\|locus:2040327		772	PIP5K5 "phosphatidylinositol-	0.812	0.646	0.473	5.7e-123
TAIR\|locus:2197454		754	AT1G10900 [Arabidopsis thalian	0.828	0.675	0.389	1.5e-90
CGD\|CAL0002340		721	MSS4 [Candida albicans (taxid:	0.359	0.306	0.459	2.4e-49
UNIPROTKB\|Q59L34		721	MSS4 "Putative uncharacterized	0.359	0.306	0.459	2.4e-49

TAIR\|locus:2201108 PIP5K1 "phosphatidylinositol-4-phosphate 5-kinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2204 (780.9 bits), Expect = 2.1e-228, P = 2.1e-228
 Identities = 399/519 (76%), Positives = 445/519 (85%)

Query:    97 EKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEF 156
             EK LPNGDLYIGSF G  PHGSGKYLW DGCMYEG+W+RGKASGKGKFSWPSGATYEGEF
Sbjct:    72 EKPLPNGDLYIGSFSGGFPHGSGKYLWKDGCMYEGDWKRGKASGKGKFSWPSGATYEGEF 131

Query:   157 KSGRMEXXXXXXXXXXXXYRGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWK 216
             KSGRME            YRG W +DRKHG+G+KRYANGD YEG W++NLQDG+GRYVW+
Sbjct:   132 KSGRMEGFGTFTGADGDTYRGTWVADRKHGHGQKRYANGDFYEGTWRRNLQDGRGRYVWR 191

Query:   217 NGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKGSGVFTWPDGSCYIGTWNISSK 276
             NGN+Y GEW++GVISG+G L+W NGN+YEG WENG PKG+GVFTW DGS  +G WN S+ 
Sbjct:   192 NGNQYTGEWRSGVISGKGLLVWPNGNRYEGLWENGIPKGNGVFTWSDGSSCVGAWNESN- 250

Query:   277 DVKLQQLNGTYYHGSNGKEQN-LVVTSRKRSSVDGARASLNEKNIIFPRICIWESDGEAG 335
                   +  +++   NG E+N L+V +RKRSSVD    SL  + + FPRICIWESDGEAG
Sbjct:   251 ------IMRSFF---NGVEKNDLIVGNRKRSSVDSGAGSLGGEKV-FPRICIWESDGEAG 300

Query:   336 DITCDIIDNVEASMIYEGFGFDIDRDGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELML 395
             DITCDIIDNVEASMIY      +DRDG RQF+++PC FNGE KKPGQTISKGHK Y+LML
Sbjct:   301 DITCDIIDNVEASMIYRD-RISVDRDGFRQFKKNPCWFNGEAKKPGQTISKGHKKYDLML 359

Query:   396 NLQLGIRYSVGKHASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMV 455
             NLQLGIRYSVGKHASI+RDLK +DFDPKEK+WTRF PEG+K TPPHQSV+FRWKDYCP+V
Sbjct:   360 NLQLGIRYSVGKHASIVRDLKQTDFDPKEKFWTRFPPEGTKTTPPHQSVDFRWKDYCPLV 419

Query:   456 FRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLL 515
             FR LRELFQVDPA YMLAICG+DALRELSSPGKSGSFFY+TQDDRFMIKTVKKSEVKVLL
Sbjct:   420 FRRLRELFQVDPAKYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLL 479

Query:   516 RMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSS 575
             RMLPSYY+HVC+YENSLVT+FYGVHCVKP+GGQKTRFIVMGNLFCS+YRI RRFDLKGSS
Sbjct:   480 RMLPSYYKHVCQYENSLVTRFYGVHCVKPVGGQKTRFIVMGNLFCSEYRIQRRFDLKGSS 539

Query:   576 HGRTTDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK 614
             HGR+T KP  EIDETTTLKDLDLNF FRLQRNWYQELMK
Sbjct:   540 HGRSTAKPEGEIDETTTLKDLDLNFSFRLQRNWYQELMK 578

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016307 "phosphatidylinositol phosphate kinase activity" evidence=IEA;IDA

GO:0016308 "1-phosphatidylinositol-4-phosphate 5-kinase activity" evidence=IEA;ISS;IDA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA

GO:0003785 "actin monomer binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2203211 PIP5K2 "phosphatidylinositol-4-phosphate 5-kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066246 PIP5K3 "1-phosphatidylinositol-4-phosphate 5-kinase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077397 PIP5K6 "phosphatidylinositol-4-phosphate 5-kinase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2085074 PIP5K9 "phosphatidyl inositol monophosphate 5 kinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080585 PIP5K4 "phosphatidyl inositol monophosphate 5 kinase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040327 PIP5K5 "phosphatidylinositol- 4-phosphate 5-kinase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2197454 AT1G10900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0002340 MSS4 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59L34 MSS4 "Putative uncharacterized protein MSS4" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56YP2	PI5K1_ARATH	2, ., 7, ., 1, ., 6, 8	0.75	0.8550	0.6981	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.68	0.946
3rd Layer	2.7.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		614
PLN03185		765	PLN03185, PLN03185, phosphatidylinositol phosphate	1e-174
cd00139		313	cd00139, PIPKc, Phosphatidylinositol phosphate kin	1e-102
smart00330		342	smart00330, PIPKc, Phosphatidylinositol phosphate	7e-95
pfam01504		255	pfam01504, PIP5K, Phosphatidylinositol-4-phosphate	6e-67
COG5253		612	COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-	6e-32
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	6e-21
PLN03185		765	PLN03185, PLN03185, phosphatidylinositol phosphate	2e-18
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	8e-18
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	1e-14
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	9e-11
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	6e-10
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	6e-07
COG4642		139	COG4642, COG4642, Uncharacterized protein conserve	2e-06
pfam02493		23	pfam02493, MORN, MORN repeat	3e-04
pfam02493		23	pfam02493, MORN, MORN repeat	4e-04
pfam02493		23	pfam02493, MORN, MORN repeat	8e-04
pfam02493		23	pfam02493, MORN, MORN repeat	0.001
smart00698		22	smart00698, MORN, Possible plasma membrane-binding	0.001
smart00698		22	smart00698, MORN, Possible plasma membrane-binding	0.002
smart00698		22	smart00698, MORN, Possible plasma membrane-binding	0.002
pfam02493		23	pfam02493, MORN, MORN repeat	0.003
smart00698		22	smart00698, MORN, Possible plasma membrane-binding	0.004

>gnl\|CDD\|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

 Score =  514 bits (1325), Expect = e-174
 Identities = 241/575 (41%), Positives = 324/575 (56%), Gaps = 63/575 (10%)

Query: 97  EKALPNGDLYIGSFVGNAPHGSGKYLWTD-----------------------GCMYEGEW 133
           E  L NGD Y GS +GN P G GKYLW+D                       G  YEGE+
Sbjct: 2   ELVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEF 61

Query: 134 RRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSDGDTYRGAWSSDRKHGYGEKRYA 193
             G   G G ++   G TY+G ++     G G     +GD + G+W    + G G+  +A
Sbjct: 62  SGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWA 121

Query: 194 NGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTP 253
           NG+VY G  K     G+G   W +G+ Y G+W +G++ G G   W++G  Y G W  G  
Sbjct: 122 NGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWSDGGCYVGTWTRGLK 181

Query: 254 KGSGVFTWPDGSCYIGT-----WNISSKDVKLQQLNGTYYHGSNGKEQNLV-VTSRKRSS 307
            G GVF +P GS            +  + V            S+  EQ    V+S K S 
Sbjct: 182 DGKGVF-YPAGSRVPAVQEFYLNALRKRGVLPDLRRQNQVLSSHNSEQLSRGVSSDKLSK 240

Query: 308 VD--GARASLNEKNIIFPRICIWESDGEAGD-ITCDIIDNVEASM-IYEGFGFDIDR--- 360
                   S N    +  R   W  +      I  D   +  A +       +  +R   
Sbjct: 241 GSLLPLEQSRNRNVSLERR---WSLEVSIEKVIGHDYSGSSSAVLDEGSEVEYKANRPIL 297

Query: 361 --------------------DGIRQFRRSPCCFNGEVKKPGQTISKGHKNYELMLNLQLG 400
                                  R+ +R       E+K+PG+TI KGH++Y+LML+LQLG
Sbjct: 298 EREYMQGVLISELVLNNSFSSTSRRAKRRQKKLVKEIKRPGETIIKGHRSYDLMLSLQLG 357

Query: 401 IRYSVGKHASILR-DLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHL 459
           IRY+VGK   I R +++PSDF P+  +W  F   GS++TP HQS +F+WKDYCPMVFR+L
Sbjct: 358 IRYTVGKITPIQRREVRPSDFGPRASFWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNL 417

Query: 460 RELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLP 519
           RE+F++D A+YM++ICG+DALRELSSPGKSGS F+++QDDRFMIKT++KSEVKVLLRMLP
Sbjct: 418 REMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLP 477

Query: 520 SYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRT 579
            Y+ HV  YEN+L+TKF+G+H +KP  GQK RF+VMGN+FC++ RIHRRFDLKGSS GR+
Sbjct: 478 DYHHHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRS 537

Query: 580 TDKPVEEIDETTTLKDLDLNFVFRLQRNWYQELMK 614
            DK   EIDE TTLKDLDLN+ F L+ +W   L++
Sbjct: 538 ADKV--EIDENTTLKDLDLNYSFYLEPSWRDALLR 570

Length = 765

>gnl\|CDD\|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate	Back alignment and domain information

>gnl\|CDD\|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases	Back alignment and domain information

>gnl\|CDD\|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase	Back alignment and domain information

>gnl\|CDD\|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>gnl\|CDD\|202256 pfam02493, MORN, MORN repeat	Back alignment and domain information

>gnl\|CDD\|202256 pfam02493, MORN, MORN repeat	Back alignment and domain information

>gnl\|CDD\|202256 pfam02493, MORN, MORN repeat	Back alignment and domain information

>gnl\|CDD\|202256 pfam02493, MORN, MORN repeat	Back alignment and domain information

>gnl\|CDD\|197832 smart00698, MORN, Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

>gnl\|CDD\|197832 smart00698, MORN, Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

>gnl\|CDD\|197832 smart00698, MORN, Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

>gnl\|CDD\|202256 pfam02493, MORN, MORN repeat	Back alignment and domain information

>gnl\|CDD\|197832 smart00698, MORN, Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		614
PLN03185		765	phosphatidylinositol phosphate kinase; Provisional	100.0
KOG0229		420	consensus Phosphatidylinositol-4-phosphate 5-kinas	100.0
cd00139		313	PIPKc Phosphatidylinositol phosphate kinases (PIPK	100.0
smart00330		342	PIPKc Phosphatidylinositol phosphate kinases.	100.0
PLN03185		765	phosphatidylinositol phosphate kinase; Provisional	100.0
COG5253		612	MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Si	100.0
PF01504		252	PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase;	100.0
KOG0230		1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	99.93
COG4642		139	Uncharacterized protein conserved in bacteria [Fun	99.75
COG4642		139	Uncharacterized protein conserved in bacteria [Fun	99.73
KOG0231		455	consensus Junctional membrane complex protein Junc	99.73
KOG0231		455	consensus Junctional membrane complex protein Junc	99.72
COG2849		230	Uncharacterized protein conserved in bacteria [Fun	98.63
COG2849		230	Uncharacterized protein conserved in bacteria [Fun	98.52
smart00698		26	MORN Possible plasma membrane-binding motif in jun	97.19
PF02493		23	MORN: MORN repeat; InterPro: IPR003409 The MORN (M	97.13
smart00698		26	MORN Possible plasma membrane-binding motif in jun	97.1
PF02493		23	MORN: MORN repeat; InterPro: IPR003409 The MORN (M	97.06

>PLN03185 phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1e-115  Score=990.19  Aligned_cols=509  Identities=54%  Similarity=1.023  Sum_probs=436.7

Q ss_pred             EEEEcCCCCEEEEEEECCEEeeeEEEEEcCCcEEEEEEECCEEeeeEEEEecCCCeEEEEEeCCeEeeEEEEEecCCCEE
Q 007182           96 TEKALPNGDLYIGSFVGNAPHGSGKYLWTDGCMYEGEWRRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSDGDTY  175 (614)
Q Consensus        96 ~~~~~~nG~~Y~G~~~~g~~hG~G~~~~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~fknG~~~G~G~~~~~nG~~Y  175 (614)
                      +++.++||++|+|+|.+++|||.|+++|+||++|+|+|++|++||.|++.|++|.+|+|+|.+|++||.|++++++|.+|
T Consensus         1 Ge~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~Y   80 (765)
T PLN03185          1 GELVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTY   80 (765)
T ss_pred             CeEEecCCCEEEEEEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEE
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCcccccceeEEecCceeeeeeccceeeecEEEEEcCCCEEEEEEECCeEeeeeEEEecCCCEEEEEEeCCeeee
Q 007182          176 RGAWSSDRKHGYGEKRYANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNKYEGQWENGTPKG  255 (614)
Q Consensus       176 ~G~w~~g~~~G~G~~~y~nG~~YeG~~~~G~~~G~G~~~~~nG~~Y~G~fknGk~~G~G~~~~~nG~~yeG~w~nG~~~G  255 (614)
                      +|+|++|++||.|++.|+||++|+|+|++|+++|.|+|.|+||++|+|+|++|++||.|+++|+||++|+|+|+||++||
T Consensus        81 eG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG  160 (765)
T PLN03185         81 KGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHG  160 (765)
T ss_pred             EEEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCEEEEEEeCCCCCcccccccEEEEeCCCCceeee-eee---------cC--cc--------c-----cccc
Q 007182          256 SGVFTWPDGSCYIGTWNISSKDVKLQQLNGTYYHGSNGKEQNL-VVT---------SR--KR--------S-----SVDG  310 (614)
Q Consensus       256 ~G~~~~~dG~~y~G~w~~g~~~~~~~~G~G~~y~~~g~~~~~~-~~~---------~~--~~--------~-----~~~~  310 (614)
                      .|+++|+||.+|+|.|.+|+++     |.|+||+.+....... .+.         ..  ++        +     .++.
T Consensus       161 ~G~y~~~DG~~Y~G~W~~G~~~-----G~G~~y~~G~~~p~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (765)
T PLN03185        161 FGVYTWSDGGCYVGTWTRGLKD-----GKGVFYPAGSRVPAVQEFYLNALRKRGVLPDLRRQNQVLSSHNSEQLSRGVSS  235 (765)
T ss_pred             eEEEEECCCCEEEEEeeCCceE-----eEEEEEECCCcccccchhhhhcccccccccchhhccccccccccccccccccc
Confidence            9999999999999999999999     9999998543211111 010         00  00        0     0000


Q ss_pred             cccccccc----------ccccCceeeecCCCCCCCccchhch----hhccccc----cc--Cccceeccccccc-----
Q 007182          311 ARASLNEK----------NIIFPRICIWESDGEAGDITCDIID----NVEASMI----YE--GFGFDIDRDGIRQ-----  365 (614)
Q Consensus       311 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~--~~~~~~~~~~~~~-----  365 (614)
                      ...+ +.+          .+.+  -+.|.++....+..+....    ..+..++    ..  .+.+||+++||+.     
T Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (765)
T PLN03185        236 DKLS-KGSLLPLEQSRNRNVSL--ERRWSLEVSIEKVIGHDYSGSSSAVLDEGSEVEYKANRPILEREYMQGVLISELVL  312 (765)
T ss_pred             cccc-ccccccccccccccccc--cccccccCcccceecccccccccccccchhhccccccccccchhhhcceeeeeeec
Confidence            0000 000          1111  1345544333332211100    0000000    01  1345788888831     


Q ss_pred             ------cccCCcc----cCCcccCCCceecCCcccHHHHHHHHhchhccccccccc-ccCCCCCCCCCcceeEeecCCCC
Q 007182          366 ------FRRSPCC----FNGEVKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASI-LRDLKPSDFDPKEKYWTRFAPEG  434 (614)
Q Consensus       366 ------~~~~~~~----~~~~~~~~g~~i~~gh~~~~L~~~~~~Gir~sv~~~~~~-~~~l~~~df~~~~k~~~~f~~~g  434 (614)
                            ..++++.    ..++++++|++||+||+||+||+|||||||+||++++++ .++|+++||++++++++.||++|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~gh~~~~l~~~~~~GIr~sv~~~~~~~~~~l~~~DF~~~~~~~~~fp~~g  392 (765)
T PLN03185        313 NNSFSSTSRRAKRRQKKLVKEIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRPSDFGPRASFWMNFPKAG  392 (765)
T ss_pred             ccccchhccccccccccchhhhcCCCcEEecCcCcHHHHHHHHHhHHHHhccccccCCccCChhhCcceEEEEEEcCccc
Confidence                  1122222    225779999999999999999999999999999999987 67999999999999999999999


Q ss_pred             CCCCCCccccceEEEEeCHHHHHHHHHHcCCChhhhHHhhcCCcccccccCCCCccceeEEeeCCeEEEEecCHHHHHHH
Q 007182          435 SKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVL  514 (614)
Q Consensus       435 s~~t~~~~~~~f~~k~Y~P~~F~~LR~~~gi~~~~y~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKti~k~E~~~l  514 (614)
                      +..||+|+..+|+||+|||.||++||++|+|+++||+.|||++.+|+|++|+|||||+||+|+|+|||||||+++|+++|
T Consensus       393 s~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l  472 (765)
T PLN03185        393 SQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVL  472 (765)
T ss_pred             CccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCceeeeeEeEEEEEeeCCeEEEEEEEeeeccCCCceeeeEEeeccccCCCCCCCcccccCCccee
Q 007182          515 LRMLPSYYQHVCRYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLK  594 (614)
Q Consensus       515 ~~~lp~Y~~h~~~~~~tLL~k~~Gl~~i~~~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lK  594 (614)
                      ++|||+||+||..||+|||+||||||+|++.+++++|||||+|||+++..||++||||||+++|++++.  +.++.+|||
T Consensus       473 ~~iLp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g~k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~--~~~~~~tlK  550 (765)
T PLN03185        473 LRMLPDYHHHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKV--EIDENTTLK  550 (765)
T ss_pred             HHHHHHHHHHHhhCCCcchhhheEEEEEEeCCCcEEEEEEEecCCCCCCccceEEECCCCCCCCCCccc--cccCCCeee
Confidence            999999999999999999999999999998889999999999999999999999999999999999763  457889999


Q ss_pred             ecCcCceeccCHHHHHHhhC
Q 007182          595 DLDLNFVFRLQRNWYQELMK  614 (614)
Q Consensus       595 DlD~~~~~~~~~~~~~~~~~  614 (614)
                      ||||++.++|++.|+++|++
T Consensus       551 DlD~~~~~~l~~~~k~~l~~  570 (765)
T PLN03185        551 DLDLNYSFYLEPSWRDALLR  570 (765)
T ss_pred             ecCcCceEeeCHHHHHHHHH
Confidence            99999999999999999873

>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate	Back alignment and domain information

>smart00330 PIPKc Phosphatidylinositol phosphate kinases	Back alignment and domain information

>PLN03185 phosphatidylinositol phosphate kinase; Provisional	Back alignment and domain information

>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []	Back alignment and domain information

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]	Back alignment and domain information

>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins ()	Back alignment and domain information

>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases	Back alignment and domain information

>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins ()	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		614
1bo1_A		416	Phosphatidylinositol Phosphate Kinase Type Ii Beta		2e-19
2ybx_A		394	Crystal Structure Of Human Phosphatidylinositol-5-P		4e-19
2gk9_A		392	Human Phosphatidylinositol-4-Phosphate 5-Kinase, Ty		7e-17

>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta Length = 416

Back alignment and structure

Iteration: 1

Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 10/186 (5%) Query: 415 LKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAI 474 L P DF K +++ + + F++K+YCPMVFR+LRE F +D +Y ++ Sbjct: 66 LMPDDF----KAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSV 121 Query: 475 CGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCR-YENSLV 533 + S G+ G+ F T D RF+IKTV +V + +L Y+Q + + N+L+ Sbjct: 122 TRSAPINS-DSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLL 180 Query: 534 TKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGR-TTDKPVEEIDETTT 592 +F G++ + + G +T +V N+F +HR++DLKGS+ R +DK E+ + T Sbjct: 181 PQFLGMYRLT-VDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDK--EKAKDLPT 237 Query: 593 LKDLDL 598 KD D Sbjct: 238 FKDNDF 243

PyMOL of 1bo1

>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha Length = 394

Back alignment and structure

>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii, Gamma Length = 392

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		614
2ybx_A		394	Phosphatidylinositol-5-phosphate 4-kinase type-2;	2e-72
2gk9_A		392	Phosphatidylinositol-4-phosphate 5-kinase, type II	4e-67
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	6e-46
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	7e-44
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	1e-31
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	3e-23
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	7e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11

>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A Length = 394	Back alignment and structure

 Score =  237 bits (605), Expect = 2e-72
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 377 VKKPGQTISKGHKNYELMLNLQLGIRYSVGK--HASILRDLKPSDFDPKEKYWTRFAPEG 434
           V    + +        L+  L  G+ +S+ +  H  I   L P DF    K       + 
Sbjct: 11  VDLGTENLYFQS-MDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKV----DN 65

Query: 435 SKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFY 494
                 +    F++K+YCPMVFR+LRE F +D  ++  ++          S  +SG+ F+
Sbjct: 66  HLFNKENMPSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSA-PLPNDSQARSGARFH 124

Query: 495 VTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCR-YENSLVTKFYGVHCVKPIGGQKTRFI 553
            + D R++IKT+   +V  +  +L  Y+Q++   +  +L+ +F G++ +  + G +   I
Sbjct: 125 TSYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLN-VDGVEIYVI 183

Query: 554 VMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLD---LNFVFRLQRNWYQ 610
           V  N+F     ++R++DLKGS+  R      E+  E  TLKD D         +  N  +
Sbjct: 184 VTRNVFSHRLSVYRKYDLKGSTVAREA-SDKEKAKELPTLKDNDFINEGQKIYIDDNNKK 242

Query: 611 ELMK 614
             ++
Sbjct: 243 VFLE 246

PyMOL of 2ybx

>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens} Length = 392	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Length = 293	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Length = 293	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Length = 293	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Length = 293	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Length = 293	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		614
2ybx_A		394	Phosphatidylinositol-5-phosphate 4-kinase type-2;	100.0
2gk9_A		392	Phosphatidylinositol-4-phosphate 5-kinase, type II	100.0
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	99.93
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	99.93
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.81
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.8
2aqx_A		289	Predicted: inositol 1,4,5-trisphosphate 3-kinase;	83.27

>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A	Back alignment and structure

Probab=100.00  E-value=9.6e-54  Score=458.61  Aligned_cols=227  Identities=28%  Similarity=0.436  Sum_probs=193.8

Q ss_pred             ccCCCceecCCcccHHHHHHHHhchhccccccccc--ccCCCCCCCCCcceeEee---cCCCCCCCCCCccccceEEEEe
Q 007182          377 VKKPGQTISKGHKNYELMLNLQLGIRYSVGKHASI--LRDLKPSDFDPKEKYWTR---FAPEGSKITPPHQSVEFRWKDY  451 (614)
Q Consensus       377 ~~~~g~~i~~gh~~~~L~~~~~~Gir~sv~~~~~~--~~~l~~~df~~~~k~~~~---f~~~gs~~t~~~~~~~f~~k~Y  451 (614)
                      .--.|++.+..+.++.||.+||||||++|++++++  +..|+++||++.+|+++.   |+++   .+|.    +|+|++|
T Consensus        10 ~~~~~~~~~~~r~~~~l~~~~~~Gi~~~v~~~~~~~~~~~L~~~df~~~~k~~~~~~~f~~~---~~p~----~f~~k~Y   82 (394)
T 2ybx_A           10 GVDLGTENLYFQSMDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKE---NMPS----HFKFKEY   82 (394)
T ss_dssp             -------CCCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGGCEEEEEEEEESSSTT---TSCS----EEEEEEE
T ss_pred             ccCCCCcccccccchHHHHHHHHhHHHHHhhccCCCCccccChhHhhhheEEecccccCCcc---cCCC----CeEEEEE
Confidence            34478899999999999999999999999998876  556899999999999873   4544   3443    7999999


Q ss_pred             CHHHHHHHHHHcCCChhhhHHhhcCCcccccccCCCCccceeEEeeCCeEEEEecCHHHHHHHHHHHHHHHHHhh-cCCC
Q 007182          452 CPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVC-RYEN  530 (614)
Q Consensus       452 ~P~~F~~LR~~~gi~~~~y~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKti~k~E~~~l~~~lp~Y~~h~~-~~~~  530 (614)
                      ||.+|++||++|||++++|+.|||++..+. +.|+|||||+||+|.|+|||||||+++|+++|+++||+||+||. .||+
T Consensus        83 ~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~~~~~~~~  161 (394)
T 2ybx_A           83 CPMVFRNLRERFGIDDQDFQNSLTRSAPLP-NDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGI  161 (394)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHHHSSCCEE-CC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHhcCCCccc-cCCCCCccCEEEEeCCCcEEEEeeCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999877654 78999999999999999999999999999999999999999995 5999


Q ss_pred             ceeeeeEeEEEEEeeCCeEEEEEEEeeeccCCCceeeeEEeeccccCCCCCCCcccccCCcceeecCc---CceeccCHH
Q 007182          531 SLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLDL---NFVFRLQRN  607 (614)
Q Consensus       531 tLL~k~~Gl~~i~~~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~---~~~~~~~~~  607 (614)
                      |||+||||||+|+ ..++++|||||+|||++...||++||||||+++|.+.+++ ..+..+||||+||   +..+++.+.
T Consensus       162 TLL~k~~Gly~v~-~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~-~~~~~~~LkD~df~~~~~~i~l~~~  239 (394)
T 2ybx_A          162 TLLPQFLGMYRLN-VDGVEIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKE-KAKELPTLKDNDFINEGQKIYIDDN  239 (394)
T ss_dssp             CSSCCEEEEEEEE-ETTEEEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHH-HTSSSCEECHHHHHHTTCCCCCCHH
T ss_pred             cChhhhcEEEEEE-ECCeEEEEEEEecCCCCCcceeeeeeecccccCCccCccc-cccCcceecccchHhcCCeEEECHH
Confidence            9999999999999 5788999999999999988999999999999999998643 3356789999998   567899999


Q ss_pred             HHHHhh
Q 007182          608 WYQELM  613 (614)
Q Consensus       608 ~~~~~~  613 (614)
                      |++.|+
T Consensus       240 ~k~~l~  245 (394)
T 2ybx_A          240 NKKVFL  245 (394)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988876

PyMOL of 2ybx

>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		614
d1bo1a_		383	d.143.1.2 (A:) Phosphatidylinositol phosphate kina	3e-75

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} Length = 383	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  243 bits (621), Expect = 3e-75
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 13/231 (5%)

Query: 390 NYELMLNLQLGIRYSVGK--HASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFR 447
           +  ++  L  G+ +++ +  +  +   L P DF    K +++   +       +    F+
Sbjct: 6   SEPILSVLMWGVNHTINELSNVPVPVMLMPDDF----KAYSKIKVDNHLFNKENLPSRFK 61

Query: 448 WKDYCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVK 507
           +K+YCPMVFR+LRE F +D  +Y  ++          S G+ G+ F  T D RF+IKTV 
Sbjct: 62  FKEYCPMVFRNLRERFGIDDQDYQNSVTRSA-PINSDSQGRCGTRFLTTYDRRFVIKTVS 120

Query: 508 KSEVKVLLRMLPSYYQHVCR-YENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIH 566
             +V  +  +L  Y+Q +   + N+L+ +F G++ +  + G +T  +V  N+F     +H
Sbjct: 121 SEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT-VDGVETYMVVTRNVFSHRLTVH 179

Query: 567 RRFDLKGSSHGRTTDKPVEEIDETTTLKDLDL---NFVFRLQRNWYQELMK 614
           R++DLKGS+  R      E+  +  T KD D         +     +  ++
Sbjct: 180 RKYDLKGSTVAREASDK-EKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLE 229

PyMOL of d1bo1a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		614
d1bo1a_		383	Phosphatidylinositol phosphate kinase IIbeta, PIPK	100.0
d2f69a1		78	Histone H3 K4-specific methyltransferase SET7/9 N-	81.69

>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-55  Score=465.07  Aligned_cols=218  Identities=27%  Similarity=0.497  Sum_probs=192.3

Q ss_pred             ccHHHHHHHHhchhccccccccc--ccCCCCCCCCCcceeEeecCCCCCCCCCCccccceEEEEeCHHHHHHHHHHcCCC
Q 007182          389 KNYELMLNLQLGIRYSVGKHASI--LRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVD  466 (614)
Q Consensus       389 ~~~~L~~~~~~Gir~sv~~~~~~--~~~l~~~df~~~~k~~~~f~~~gs~~t~~~~~~~f~~k~Y~P~~F~~LR~~~gi~  466 (614)
                      .+..||.+||||||+||++++++  ++.|+|+||.+..++.    .+++..+|+|...+|+||+|||.||++||++|||+
T Consensus         5 ~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~----~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~   80 (383)
T d1bo1a_           5 ASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIK----VDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID   80 (383)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEE----EECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred             cchHHHHHHHHhHHHHHHhhcCCCcchhcCcccceeeEEEe----cCCCCCCcCCCCCCeEEEEeCHHHHHHHHHHcCCC
Confidence            35689999999999999998876  5568999999877654    46788889998899999999999999999999999


Q ss_pred             hhhhHHhhcCCcccccccCCCCccceeEEeeCCeEEEEecCHHHHHHHHHHHHHHHHHhh-cCCCceeeeeEeEEEEEee
Q 007182          467 PANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVC-RYENSLVTKFYGVHCVKPI  545 (614)
Q Consensus       467 ~~~y~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKti~k~E~~~l~~~lp~Y~~h~~-~~~~tLL~k~~Gl~~i~~~  545 (614)
                      ++||+.|||++..+ +..|+|||||+||+|+|+|||||||+++|+++|+++||.||+||. .||+|||+||||||+|+ .
T Consensus        81 ~~dy~~Sl~~~~~~-~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~-~  158 (383)
T d1bo1a_          81 DQDYQNSVTRSAPI-NSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT-V  158 (383)
T ss_dssp             HHHHHHHHHSSCCE-ECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEE-E
T ss_pred             HHHHHHHhCCCccc-cccccCCcCCeEEEecCCcEEEEEeCHHHHHHHHHHHHHHHHHHHhcCCCcCHHhhheeeEEE-e
Confidence            99999999987655 457899999999999999999999999999999999999999996 59999999999999999 6


Q ss_pred             CCeEEEEEEEeeeccCCCceeeeEEeeccccCCCCCCCcccccCCcceeecCc---CceeccCHHHHHHhh
Q 007182          546 GGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGRTTDKPVEEIDETTTLKDLDL---NFVFRLQRNWYQELM  613 (614)
Q Consensus       546 ~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~~lKDlD~---~~~~~~~~~~~~~~~  613 (614)
                      ++.++|||||+|||++...||++||||||+++|.+++.+ ..++.+||||+||   +..+++.+.+++.|+
T Consensus       159 ~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~-~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~  228 (383)
T d1bo1a_         159 DGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKE-KAKDLPTFKDNDFLNEGQKLHVGEESKKNFL  228 (383)
T ss_dssp             TTEEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGG-GSSSCCEECHHHHHHTTCCCCCCSSHHHHHH
T ss_pred             CCceEEEEEEeccccCCcccceeEeccCcccccCcCccc-ccccchhhhhHHHHhccCCeeeCHHHHHHHH
Confidence            889999999999999999999999999999999998754 4467899999998   556788888777765

PyMOL of d1bo1a_

>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure