Citrus Sinensis ID: 007191

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
Protein Sequence
MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRYHGGRGGRGPYRGGRSRGSYHGRGYGYAPRGRGYGYGMSRTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccccccEcEEEEEEEcccEEEEEEEEEEcccccEEEHHcEcccccccccccccccccccEEEEEEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccHHHHccHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccEccccccccccccHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maaaateaprssssgsadsYIGSLISltskseiryeGVLFNinteessiglrndrleqkgeekigpqvppsdkiyEYILFRGSDIKHCLLTItgdaisgprlsqtrdWTLRSVIRKDiqdlqvkssppvqtttsihndpaiiqSHYSQAAiasttlpsgtgslpdptsqtsqlglsrppfqgnpplyqpggslgawgsspmpttngaglampmywqgfygspnglqgqqqpllqpppglsmlpsmqqsmqypamnpslptgvsnlpasqlaehrpplmppistgtlnllspmlpaqssamisdsstnlipdkastqtlptaapstslplvpplnsgidktavapvsepksvpgpimpfqstvsesvstvgmsssilndgimpslvtpgqllqpglpavsssqssqaaqKDVEVVqlsssesaaapppasdvqepilplpstterkpygaptstqygyrggrgrgrgrgnelsrsatrftedfdfiamnekfnkdevwghlgksnkalddgdnyedeedvgsskhenkpvyvkddffdslscdalnrgshngrprfseqvrrdtetfgdfpryhggrggrgpyrggrsrgsyhgrgygyaprgrgygygmsrts
Flexible Loop (DISEMBL)
maaaateaprssssgsadsyIGSLISLTSKSEIRYEGVLfninteessiGLRNdrleqkgeekigpqvppsdKIYEYILFRGSDIKHCLLTItgdaisgprlsqtrdWTLRSVIRkdiqdlqvkssppvqtttsiHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSesaaapppasdvqepilplpstterkpygaptstqygyrggrgrgrgrgnelsrsatrftedfdFIAMNEKFNKDEVWGHLGKsnkalddgdnYEDEEdvgsskhenkpvYVKDDFFDSLSCDALnrgshngrprfseqvrrdtetfgdfpryhggrggrgpyrggrsrgsyhgrgygyaprgrgygygmsrts
Low Complexity Region (SEG)
MAAAATEAPRssssgsadsyigsLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGlqgqqqpllqpppglsmlpsmqQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQstvsesvstvgmsssILNDGIMPSLVTPGQLLQPGLPavsssqssqaaqKDVEVVQLsssesaaapppasDVQEPILPLPSTTERKPYGAPTSTQygyrggrgrgrgrgNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFpryhggrggrgpyrggrsrgsyhgrgygyaprgrgygygMSRTS
Disordered region (IsUnstruct)
*******************YIGSLISLTSKSEIRYEGVLFNINT****************************KIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQ***************************************************************************************AGLAMPMYWQGFYG******************************************************************************************************************************************************************************************************************************************************************TEDFDFIAMNEKFNKDEVWGHL*****************************YVKDDFFDSLSC******************************************************YGY***************
Disordered Region (DISOPRED)
**********************SLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQ*********VPPSDKIYEYILFRGSDIKHCL********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FDFIAMNEKFN************************************VYVKDDFFDS**********************RDTETFGDF********************************************
Disordered Region (DISEMBL)
******************SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQ*********TTSIHNDPAIIQSHYSQAAIASTTLPSG**************GLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQP*************************************VQEPILPLPSTTERKPYGAPTSTQYGYRGG************RSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG*************HENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRYHGGRGGRGPYRGGRSRGSYHGRGYGYAPRGRGYGYGMSRTS
Disordered Region (DISPRO)
*****************DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG****************************************IHNDPAI****************************************GNPPLYQPGG***AWGSSP***TNGAGLAMPMYWQGFY***************************************************************************************************************************************************************************************************************************************************************ATRFTEDFDFIAMNEKFNKDEVWGHLGK***************************YVKDDFFDSLSCD******************RDTETFGDFPRYHGGRGGRGPYRGGRSRGSYHGRGYGYAPRGRGYGY*MS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRYHGGRGGRGPYRGGRSRGSYHGRGYGYAPRGRGYGYGMSRTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	613	2.2.26 [Sep-21-2011]
Q9C658	611	Protein decapping 5 OS=Ar	yes	no	0.835	0.837	0.467	1e-107
Q9FH77	571	Decapping 5-like protein	no	no	0.257	0.276	0.333	7e-20
Q9HGL3	426	Protein sum2 OS=Schizosac	yes	no	0.443	0.638	0.286	4e-14
Q5R4R4	463	Protein LSM14 homolog A O	yes	no	0.078	0.103	0.486	1e-12
Q8ND56	463	Protein LSM14 homolog A O	yes	no	0.078	0.103	0.486	1e-12
Q8K2F8	462	Protein LSM14 homolog A O	yes	no	0.078	0.103	0.486	1e-12
A0A8M2	471	Protein LSM14 homolog A-A	N/A	no	0.081	0.106	0.5	1e-12
Q3MHF8	463	Protein LSM14 homolog A O	yes	no	0.078	0.103	0.486	1e-12
Q8AVJ2	471	Protein LSM14 homolog A-B	N/A	no	0.117	0.152	0.5	1e-12
Q6NVR8	469	Protein LSM14 homolog A O	yes	no	0.117	0.153	0.5	2e-12

>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 280/599 (46%), Positives = 333/599 (55%), Gaps = 87/599 (14%)

Query: 11  SSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVP 69
           S SS +ADSY+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R    +G +K GPQVP
Sbjct: 8   SKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVP 67

Query: 70  PSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPV 129
           PSDK+YEYILFRG+DIK                                 DLQVK+SPPV
Sbjct: 68  PSDKVYEYILFRGTDIK---------------------------------DLQVKASPPV 94

Query: 130 Q-TTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSRPPFQGNPPLY 187
           Q   ++I+NDPAIIQSHY      S +LPS  +GSLPD +S   Q G     FQ   PLY
Sbjct: 95  QPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQPGQHGMGFQNAMPLY 154

Query: 188 QPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG-SPNGL-QGQQQPLLQPPPGLSMLPSM 245
           QPGG+LG+WG+SP P         PMYWQGFY   PNGL Q  QQ L++PP GL M  S+
Sbjct: 155 QPGGNLGSWGASPQP---------PMYWQGFYTPPPNGLPQLHQQSLIRPPHGLPMPNSL 205

Query: 246 QQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP----------- 294
           QQ +QYP  N   P   S+          P  + P ST +  L    LP           
Sbjct: 206 QQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPFPGLPPVTLSS 265

Query: 295 --------AQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVS 346
                   A S ++ S+ +  L+ +KA     PT    T+L     L+  +  T     S
Sbjct: 266 SLQSTLQSAPSPSLASEMAPPLLSNKAPITAPPTLPQDTNL-----LSFSLSTTRATEAS 320

Query: 347 -------EPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVS 399
                  +P  V GPI P Q+T   S    G+SSSI  D   P LVTPGQLLQ G  AVS
Sbjct: 321 TGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVS 380

Query: 400 SSQSSQAAQKDVEVVQLSSSES-AAAPPPASDVQEPILPLPSTTE--RKPYGAPTSTQYG 456
            S  S  A KDVEVVQ+SSS     + P  S+ Q PILPLPS+    +KP G       G
Sbjct: 381 LSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKPNGHSFPNHNG 440

Query: 457 YRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDE 516
           YRG            S    +FTEDFDF AMNEKFNKDEVWGHLGKS     DGD  +D 
Sbjct: 441 YRGRGRGRGRGAGR-SHQVMKFTEDFDFTAMNEKFNKDEVWGHLGKSTTL--DGDEDDDS 497

Query: 517 EDVGSS---KHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRY 572
             V  +   K E KPVY KDDFFDSLS + ++R S N RPRFSEQ + DTETFG+F R+
Sbjct: 498 PTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGEFSRF 556

As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1

 Score = 99.4 bits (246), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 67/225 (29%)

Query: 18  DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYE 76
           D++IGS ISL SK EIRYEG+L+++N ++S++GL+N R    +G +K GPQ+PP DK+Y+
Sbjct: 31  DTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYD 90

Query: 77  YILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIH 136
           YILFRGSDIK                                 DLQV  SP  Q+   I 
Sbjct: 91  YILFRGSDIK---------------------------------DLQVNPSPSAQSRQEIQ 117

Query: 137 NDPAIIQSHYSQAAIASTTLPSG------------------TGSLPDPTSQTSQLGLSRP 178
           ++  + QS +S+ A+  ++  SG                    S P P +Q S + LS  
Sbjct: 118 SEQDVNQSPHSRPAMTMSSPISGYDSGYGLGRGSQWINTPALSSKPVPVTQHSSVPLSFQ 177

Query: 179 PFQGNPPLYQPGGSLGAWGSSPM----PTTNGAGLAMPM--YWQG 217
           P         P  + G+   SP+     T + AG +MP+  + QG
Sbjct: 178 P---------PSANAGSLTESPVSLIDSTQSNAGSSMPIPSFVQG 213

As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor (By similarity).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sum2 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 154/360 (42%), Gaps = 88/360 (24%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGP--QVPPSDKIYEY 77
           +IGS ISL SKS+IRY G+L +IN+++S++ L++ R       K  P  ++PPSD +++Y
Sbjct: 4   FIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDY 63

Query: 78  ILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHN 137
           I+FRGSD+K   +                            +     S+PPVQ      N
Sbjct: 64  IVFRGSDVKDLRIE---------------------------EPATTPSAPPVQPP----N 92

Query: 138 DPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 192
           DPAII     Q +++QA  A    P        P  Q    G     +   P  + P G 
Sbjct: 93  DPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGG 152

Query: 193 LGAWGSSPMPT-TNGAGLAMPMYWQGFYGSPNGLQGQQQPLL----------QPP----P 237
           L      P+ T  + +  A+P     +YG+P+  Q  Q+P            Q P    P
Sbjct: 153 L------PLGTPLDASTPAVP-----YYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRP 201

Query: 238 GLSMLPSMQQSMQY-PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPA- 295
           G  M PS Q+   + P M    PT VS  P+ Q        MPP + G +    P + A 
Sbjct: 202 GYGM-PSNQKPPNFAPGMPAPGPTAVSASPSLQ-------SMPP-TNGVIPGAQPSIEAS 252

Query: 296 --------QSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSE 347
                   ++S + +D   N   D + +QT+ T+ PS  +P   P     D +A  P +E
Sbjct: 253 IEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQP-----DASAAKPRTE 307

Required for G2/M phase checkpoint control.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLT 91
          FRGSDIK   + 
Sbjct: 67 FRGSDIKDLTVC 78

Essential for formation of P-bodies, cytoplasmic structures that provide storage sites for non-translating mRNAs.

Pongo abelii (taxid: 9601)

>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLT 91
          FRGSDIK   + 
Sbjct: 67 FRGSDIKDLTVC 78

Essential for formation of P-bodies, cytoplasmic structures that provide storage sites for non-translating mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLT 91
          FRGSDIK   + 
Sbjct: 67 FRGSDIKDLTVC 78

Essential for formation of P-bodies, cytoplasmic structures that provide storage sites for non-translating mRNAs.

Mus musculus (taxid: 10090)

>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 48/72 (66%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+I+EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYII 66

Query: 80 FRGSDIKHCLLT 91
          FRGSDIK   + 
Sbjct: 67 FRGSDIKDLTVC 78

RNA-binding component of messenger ribonucleoprotein complexes (mRNPs), storage particles that mask maternal mRNAs from the translational apparatus during oocyte maturation. Acts as a repressor of mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLT 91
          FRGSDIK   + 
Sbjct: 67 FRGSDIKDLTVC 78

Essential for formation of P-bodies, cytoplasmic structures that provide storage sites for non-translating mRNAs.

Bos taurus (taxid: 9913)

>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLTIT 93
          FRGSDIK   LT+ 
Sbjct: 67 FRGSDIKD--LTVC 78

RNA-binding component of messenger ribonucleoprotein complexes (mRNPs), storage particles that mask maternal mRNAs from the translational apparatus during oocyte maturation. Acts as a repressor of mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+
Sbjct: 7  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66

Query: 80 FRGSDIKHCLLTIT 93
          FRGSDIK   LT+ 
Sbjct: 67 FRGSDIKD--LTVC 78

RNA-binding component of messenger ribonucleoprotein complexes (mRNPs), storage particles that mask maternal mRNAs from the translational apparatus during oocyte maturation. Acts as a repressor of mRNA translation.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
224079874	579	predicted protein [Populus trichocarpa]	0.820	0.868	0.616	1e-159
224127400	564	predicted protein [Populus trichocarpa]	0.814	0.884	0.597	1e-147
255570007	576	conserved hypothetical protein [Ricinus	0.843	0.897	0.556	1e-145
225423849	616	PREDICTED: uncharacterized protein LOC10	0.823	0.819	0.518	1e-126
147860146	665	hypothetical protein VITISV_020005 [Viti	0.858	0.790	0.5	1e-124
224099297	631	predicted protein [Populus trichocarpa]	0.856	0.832	0.498	1e-124
356499741	616	PREDICTED: uncharacterized protein LOC10	0.833	0.829	0.499	1e-123
224111756	632	predicted protein [Populus trichocarpa]	0.838	0.813	0.502	1e-121
297737880	564	unnamed protein product [Vitis vinifera]	0.789	0.858	0.521	1e-120
255566811	665	protein binding protein, putative [Ricin	0.903	0.833	0.489	1e-117

>gi|224079874|ref|XP_002305956.1| predicted protein [Populus trichocarpa] gi|222848920|gb|EEE86467.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/561 (61%), Positives = 397/561 (70%), Gaps = 58/561 (10%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           Y+GSLISLTSKSEIRYEGVLFNINT+ES+IGLRN R    +G +K G QVPPSDKIYE+I
Sbjct: 31  YVGSLISLTSKSEIRYEGVLFNINTQESTIGLRNVRSFGTEGRKKDGLQVPPSDKIYEFI 90

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRG+DIK                                 DLQVKSSPPVQT T +HND
Sbjct: 91  LFRGTDIK---------------------------------DLQVKSSPPVQTATPVHND 117

Query: 139 PAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQS Y QAA AS  LPS G GSL DP+S  S  GL RP FQG+ P YQP  SL +WG
Sbjct: 118 PAIIQSQYPQAATASMNLPSSGNGSLTDPSSHASSNGLPRPTFQGSLPQYQPDASLESWG 177

Query: 198 -SSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNP 256
            S  +PTTNG+GLAMPMYWQG+YG  NG+Q  QQ LL+PPPGLSM PSM QS+QYPAMN 
Sbjct: 178 PSHLLPTTNGSGLAMPMYWQGYYGPSNGVQAPQQALLRPPPGLSMPPSMMQSVQYPAMN- 236

Query: 257 SLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPA-QSSAMISDSSTNLIPDKAST 315
                 SN  AS L+E  PPL+PP ST TLNL +  +P+ +SSAM+SDS TNL PD+ ST
Sbjct: 237 -----ASNTSASPLSE-SPPLLPPFSTSTLNLQTSTIPSSRSSAMVSDS-TNLTPDRVST 289

Query: 316 QTLPTAAPSTSLPLVPPLNSGIDKTAVA-PVSE-PKSVPGPIMPFQSTVSESVSTVGMSS 373
           QTLP+     +LPL  PL + +DK A+A P S  PK+VP PIMPF+       S +  SS
Sbjct: 290 QTLPS-----NLPLASPLTTAVDKIAIASPGSYLPKTVPDPIMPFKRMSEPPSSIMRTSS 344

Query: 374 SILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPP--PASDV 431
           S+L +G  P LVTPGQL QPG P V S QSSQ AQKDVEVVQ+SS E +A PP   A++V
Sbjct: 345 SVLKEGKTP-LVTPGQLSQPGPPIVPSLQSSQIAQKDVEVVQVSSPELSALPPTTAAAEV 403

Query: 432 QEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKF 491
           Q+PILPLPS  E K YGAP  T +      GRGRGR NE+SRSATRF EDFDF AMNEKF
Sbjct: 404 QKPILPLPSQPEHKIYGAPMYTYH--TSRGGRGRGRENEISRSATRFEEDFDFTAMNEKF 461

Query: 492 NKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNG 551
           NKDEVWGHLGKS+KA  D D+  DE+DVGSSK E KPVYVKDDFFDS+SCDAL+ GS NG
Sbjct: 462 NKDEVWGHLGKSHKA-QDRDDLLDEDDVGSSKLETKPVYVKDDFFDSISCDALDGGSRNG 520

Query: 552 RPRFSEQVRRDTETFGDFPRY 572
           R RFS+Q RRDT+TF +F  +
Sbjct: 521 RARFSQQSRRDTDTFVNFSHH 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127400|ref|XP_002329268.1| predicted protein [Populus trichocarpa] gi|222870722|gb|EEF07853.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 335/561 (59%), Positives = 387/561 (68%), Gaps = 62/561 (11%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           Y+GSLISLTSKSEIRYEGVLFNI+T+ES+IGLRN R    +G +K G QVPPSDK+YE+I
Sbjct: 24  YVGSLISLTSKSEIRYEGVLFNIDTQESTIGLRNVRSFGTEGRKKDGLQVPPSDKVYEFI 83

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRG+DIK                                 DLQVKS PPVQT T +HND
Sbjct: 84  LFRGTDIK---------------------------------DLQVKSYPPVQTATPVHND 110

Query: 139 PAIIQSHYSQAAIASTTLP-SGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQS Y QA  AS  LP S  G L DP+S  S  GL R  FQG+ P YQPG SL  WG
Sbjct: 111 PAIIQSQYPQATTASMNLPSSANGPLTDPSSHASSNGLPRATFQGSLPQYQPGASLEPWG 170

Query: 198 SSPM-PTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNP 256
            S + PTTN +GLAMPMYWQG+YG  NG+Q  QQ LL+PPP LSM PSM Q +QYPAMN 
Sbjct: 171 LSHLPPTTNTSGLAMPMYWQGYYGPSNGVQAPQQALLRPPPNLSMPPSMLQYVQYPAMN- 229

Query: 257 SLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQ 316
                 SN  AS L E+ PPL+PP++  T       LP++SSAM+SD STNLIPD+ STQ
Sbjct: 230 -----ASNTSASALLENPPPLLPPLNLQTST-----LPSRSSAMVSD-STNLIPDRVSTQ 278

Query: 317 TLPTAAPSTSLPLVPPLNSGIDKTAVAP-VSE-PKSVPGPIMPFQSTVSESVSTVGMSSS 374
           TLP     + LPL  PL + +DK AVAP VS+ PK+VP PIMPF+S      S +  SSS
Sbjct: 279 TLP-----SKLPLASPLTTAVDKIAVAPSVSDIPKTVPDPIMPFKSISEPPTSIMRASSS 333

Query: 375 ILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPA--SDVQ 432
           + N+G  PSLVTPGQLLQPG P + S QSS  AQKDVEVVQ+SS E +A PP    ++VQ
Sbjct: 334 VTNEGKTPSLVTPGQLLQPGPPIMPSLQSSHIAQKDVEVVQVSSPELSAPPPTTALTEVQ 393

Query: 433 EPILPLPSTTERKPYGAPTSTQYGYRGG-RGRGRGRGNELSRSATRFTEDFDFIAMNEKF 491
           E ILPLPS  E K YGAP    Y Y+    GRGRGRGNE++RSATRF EDFDF AMNEKF
Sbjct: 394 ESILPLPSQPEHKVYGAP---MYTYQSSRGGRGRGRGNEIARSATRFEEDFDFTAMNEKF 450

Query: 492 NKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNG 551
           NK+EVWGHLGKS+KA  D D+  DE+DVGSSKHE KPVYVKDDFFDS+SC AL+ GS NG
Sbjct: 451 NKEEVWGHLGKSHKA-QDRDDLLDEDDVGSSKHEAKPVYVKDDFFDSISCGALDGGSRNG 509

Query: 552 RPRFSEQVRRDTETFGDFPRY 572
           R RFS+Q  RDT  FG+F  +
Sbjct: 510 RARFSQQSIRDTNAFGNFSHH 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570007|ref|XP_002525966.1| conserved hypothetical protein [Ricinus communis] gi|223534698|gb|EEF36390.1| conserved hypothetical protein [Ricinus communis]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 322/579 (55%), Positives = 381/579 (65%), Gaps = 62/579 (10%)

Query: 2   AAAATEAPRSSSSGSADSYIGS--LISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQ 58
           A A  EAP+SSS G          LISLTSKSEIRYEGVL+NINT+ES+IGLRN R    
Sbjct: 4   ATATAEAPKSSSGGGGSGDSYIGSLISLTSKSEIRYEGVLYNINTQESTIGLRNVRSFGT 63

Query: 59  KGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDI 118
           +G ++ GPQVPPSDKIYE+ILFRGSDIK                                
Sbjct: 64  EGRKRDGPQVPPSDKIYEFILFRGSDIK-------------------------------- 91

Query: 119 QDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLP-SGTGSLPDPTSQTSQLGLSR 177
            DLQVKSSPPVQTT  IH DPAIIQSHY Q A AS T+P S TGSL D +S  S   LS 
Sbjct: 92  -DLQVKSSPPVQTTKPIHTDPAIIQSHYPQTATASMTMPSSSTGSLKDSSSHASPHELSM 150

Query: 178 PPFQGNPPLYQPGGSLGAWGS-SPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPP 236
           P FQGN PLYQPGG LG+ GS S  PTT+G GLAMPMYWQG+Y   NGLQ  QQ LL PP
Sbjct: 151 PTFQGNLPLYQPGGKLGSQGSLSNPPTTSGTGLAMPMYWQGYYDPSNGLQPHQQTLLHPP 210

Query: 237 PGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQ 296
           PGLS+ PS+QQ +Q+PA      T  S L ASQ++E+ P   P  STGT N+ S +LP Q
Sbjct: 211 PGLSIPPSIQQYVQHPA------TDASKLSASQMSENPPLSFPSFSTGTQNMQSSILPVQ 264

Query: 297 SSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAP--VSEPKSVPGP 354
           SS  + DS+ NLI +KAS Q LP A+ + +LP+  PL S +DK+ +A   + E ++V  P
Sbjct: 265 SSPTVPDSA-NLISNKASVQALPAASVNINLPMASPLTSALDKSFIASPVIIESRTVDDP 323

Query: 355 IMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVV 414
           ++P +S      S      S+ N+G +PSLVTPG  LQPG   V S QSSQAAQKDVE V
Sbjct: 324 LVPSKSMSESLSSNTRALVSVSNEGAIPSLVTPGHFLQPG--TVPSLQSSQAAQKDVEAV 381

Query: 415 QLSSSESAAAPPPAS----DVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNE 470
           Q  SSES   PPP++    ++QEPILPLP   +R+ YGAP  T   Y G RG  RGRGN 
Sbjct: 382 Q--SSES---PPPSTVAVMEMQEPILPLPCPPDRRVYGAPMHT---YHGSRGHERGRGNR 433

Query: 471 LSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVY 530
           +  +ATRF EDFDF AMNEKFNKDEVWGHLGKSNKA  + +   ++ED   SK+E KPVY
Sbjct: 434 VWDAATRFEEDFDFTAMNEKFNKDEVWGHLGKSNKA-QEDEEESEDEDNELSKYEKKPVY 492

Query: 531 VKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
           VKDDFFDSLSC +L  GS NG   FS Q+R++TETFG+F
Sbjct: 493 VKDDFFDSLSCGSLGGGSRNGSTGFSGQIRKNTETFGNF 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423849|ref|XP_002281060.1| PREDICTED: uncharacterized protein LOC100242198 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 313/604 (51%), Positives = 371/604 (61%), Gaps = 99/604 (16%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           YIGSLISLTSKSEIRYEGVL+NINTEESSIGLRN R    +G +K GPQVPPSDK+YEYI
Sbjct: 15  YIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVYEYI 74

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRGSDIK                                 DLQVKSSPPVQ T  I+ND
Sbjct: 75  LFRGSDIK---------------------------------DLQVKSSPPVQATPPINND 101

Query: 139 PAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQSHY + A  S +LPS  +G LPD +S  +QLGL    FQG  PLYQPGG+LG+WG
Sbjct: 102 PAIIQSHYPRPATTSASLPSTVSGPLPDLSSHNAQLGLPGSTFQGGLPLYQPGGNLGSWG 161

Query: 198 -SSPMPTTNGAGLAMPMYWQGFYGSPNGL-QGQQQPLLQPPPGLSMLPSMQQSMQYPAMN 255
            + P PT NG+GL MPMYWQG+YG PNGL    QQ LL+PPP LSM P     MQYP  N
Sbjct: 162 PAPPPPTANGSGLTMPMYWQGYYGPPNGLPHLHQQSLLRPPPVLSMPP-----MQYPGFN 216

Query: 256 PSLPTGVSNLPASQLAEHRPPLMPPISTGTLNL----LSP-------------------- 291
            SL  G  NLP S L E+  PL+ P S+G+LNL    LSP                    
Sbjct: 217 ASLQPGAPNLPGSNLPEYSSPLL-PTSSGSLNLTSTSLSPSTLPSNLPSSMPSILPSSMP 275

Query: 292 ----------MLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLN-SGIDKT 340
                     + P  S+A+ S++ ++L+P+K    TLP+     SLPLV PLN S  +  
Sbjct: 276 SILPSTLPSALPPVPSAALASETLSSLMPNKVPNPTLPSVTLGISLPLVTPLNTSSSEIN 335

Query: 341 AVAP--VSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAV 398
           A+AP   ++P +V GP +P+Q T+S+S+ +VG SS    +   PSLVTPGQLLQ G   +
Sbjct: 336 AIAPPISNKPNAVSGPTLPYQ-TISQSIPSVGTSSPNHPEIAAPSLVTPGQLLQSGPTTI 394

Query: 399 SSSQSSQAAQKDVEVVQLSSSESAAAPPPAS-DVQEPILPL--PSTTERKPYGAPTSTQY 455
           SSS SSQ A KDVEVVQ+SSS S  +  P S + Q PILPL  PS T +K  GAP   + 
Sbjct: 395 SSSPSSQTAHKDVEVVQVSSSASQESSVPVSAEAQPPILPLPVPSRTVQKLNGAPFQGR- 453

Query: 456 GYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYED 515
                  RGRGRG   SR  T+FTEDFDF+AMNEKF KDEVWGHLGK NK+       + 
Sbjct: 454 ----HGYRGRGRGTGGSRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKGNKSQSRDKEVDG 509

Query: 516 EEDVGSS----------KHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTET 565
           +                K E KP+Y KDDFFDSLSC+AL+  SHNGR RFSEQ++ DTET
Sbjct: 510 KVSDEDDYEDEDDAELPKFEVKPIYNKDDFFDSLSCNALDHDSHNGRTRFSEQMKIDTET 569

Query: 566 FGDF 569
           FGDF
Sbjct: 570 FGDF 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860146|emb|CAN78722.1| hypothetical protein VITISV_020005 [Vitis vinifera]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 316/632 (50%), Positives = 376/632 (59%), Gaps = 106/632 (16%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           YIGSLISLTSKSEIRYEGVL+NINTEESSIGLRN R    +G +K GPQVPPSDK+YEYI
Sbjct: 15  YIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVYEYI 74

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRGSDIK     +             R W    +    + DLQVKSSPPVQ T  I+ND
Sbjct: 75  LFRGSDIKIFSFIV-------------RGW----LALDSLPDLQVKSSPPVQATPPINND 117

Query: 139 PAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQSHY + A  S +LPS  +G LPD +S  +QLGL    FQG  PLYQPGG+LG+WG
Sbjct: 118 PAIIQSHYPRPATTSASLPSTVSGPLPDLSSHNAQLGLPGSTFQGGLPLYQPGGNLGSWG 177

Query: 198 SSPMP-TTNGAGLAMPMYWQGFYGSPNGL-QGQQQPLLQPPPGLSMLPSMQQSMQYPAMN 255
            +P P T NG+GL MPMYWQG+YG PNGL    QQ LL+PPP LSM P     MQYP  N
Sbjct: 178 PAPPPPTANGSGLTMPMYWQGYYGPPNGLPHLHQQSLLRPPPVLSMPP-----MQYPGFN 232

Query: 256 PSLPTGVSNLPASQLAEHRPPLMPPISTGTLNL----LSP-------------------- 291
            SL  G  NLP S L E+  PL+P  S+G+LNL    LSP                    
Sbjct: 233 ASLQPGAPNLPGSNLPEYSSPLLP-TSSGSLNLTSTSLSPSTLPSNLPSSMPSILPSSMP 291

Query: 292 ------------------MLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPL 333
                             + P  S+A+ S++ ++L+P+K    TLP+     SLPLV PL
Sbjct: 292 SILPSSMPSILPSTLPSALPPVPSAALASETLSSLMPNKVPNPTLPSVTLGISLPLVTPL 351

Query: 334 N-SGIDKTAVAP--VSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQL 390
           N S  +  A+AP   ++P +V GP +P+Q T+S+S+ +VG SS    +   PSLVTPGQL
Sbjct: 352 NTSSSEINAIAPPISNKPNAVSGPTLPYQ-TISQSIPSVGTSSPNHPEIAAPSLVTPGQL 410

Query: 391 LQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPAS-DVQEPILPLP--STTERKPY 447
           LQ G   +SSS SSQ A KDVEVVQ+SSS S  +  P S + Q PILPLP  S T +K Y
Sbjct: 411 LQSGPTTISSSPSSQTAHKDVEVVQVSSSASQESSVPVSAEAQPPILPLPVPSRTVQKLY 470

Query: 448 -----------GAPTSTQYGYRGGRG---------RGRGRGNELSRSATRFTEDFDFIAM 487
                        P  T        G         RGRGRG   SR  T+FTEDFDF+AM
Sbjct: 471 IGILKLDDPQNPTPRRTPKAMALLNGAPFQGRHGYRGRGRGTGGSRPVTKFTEDFDFMAM 530

Query: 488 NEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSS----------KHENKPVYVKDDFFD 537
           NEKF KDEVWGHLGK NK+       + +                K E KP+Y KDDFFD
Sbjct: 531 NEKFKKDEVWGHLGKGNKSQSRDKEVDGKVSDEDDYEDEDDAELPKFEVKPIYNKDDFFD 590

Query: 538 SLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
           SLSC+AL+  SHNGR RFSEQ++ DTETFGDF
Sbjct: 591 SLSCNALDHDSHNGRTRFSEQMKIDTETFGDF 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099297|ref|XP_002311428.1| predicted protein [Populus trichocarpa] gi|222851248|gb|EEE88795.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 312/626 (49%), Positives = 375/626 (59%), Gaps = 101/626 (16%)

Query: 8   APRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP 66
           A  S S+ +ADSYIGSLISLTSKSEIRYEG+L+NINTEESSIGL+N R    +G +K GP
Sbjct: 4   ASTSRSNSTADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLKNVRSFGTEGRKKDGP 63

Query: 67  QVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSS 126
           Q+ PSDK+YEYILFRGSDIK                                 DLQVKSS
Sbjct: 64  QILPSDKVYEYILFRGSDIK---------------------------------DLQVKSS 90

Query: 127 PPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPPFQGNPP 185
           PPVQ+   I+NDPAIIQSHY +    ST+LPS  +GSL D  S     GL    FQG  P
Sbjct: 91  PPVQSFPPINNDPAIIQSHYPRPVATSTSLPSAVSGSLTDLGSNNGPGGLPGSNFQGGLP 150

Query: 186 LYQPGGSLGAWGSS-PMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPS 244
           LYQPGGSLGAWG S P P  NG GLAMPMYWQ +YG PNG+    Q LL+PPPGL+M PS
Sbjct: 151 LYQPGGSLGAWGVSPPPPNANGNGLAMPMYWQSYYGPPNGIPHLHQSLLRPPPGLAMPPS 210

Query: 245 MQQSMQYPAMNPSLPTGV----------SNLPASQL------AEHRPPLMPPIST----- 283
           MQQ MQYP  N SLPTG            NLPAS L      A + PP   P+ST     
Sbjct: 211 MQQPMQYPNFNTSLPTGALNLASSTLPPLNLPASTLPPFNLPASNLPPSNLPVSTLPASL 270

Query: 284 --------------GTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPL 329
                          TL    P++PA S  + S++  +LIP+K     LPT     + P+
Sbjct: 271 PDVPLPLLPGITMPSTLPSTVPLIPAAS--LPSETLPSLIPNKVPISALPTTNLGVTFPV 328

Query: 330 VPPLNSGID--KTAVAPVS-EPKSVPGPIMPFQSTVSESVSTVGMSSSILND--GIMPSL 384
           + P+++      T V P+S +P S+ GP MP+QS    + S V  S+S+  +     PSL
Sbjct: 329 LSPVSTSSSDLNTIVPPISNKPSSISGPTMPYQSVTQSASSAVLASNSLRTETPTPTPSL 388

Query: 385 VTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPP-------ASDVQEPILP 437
           VTP QLLQ G   V S Q  Q A KDVEVV+ +++ +AAA P        A+  Q PILP
Sbjct: 389 VTPDQLLQSGPTIVPSPQPVQTAHKDVEVVKAAAAAAAAAAPSPEPSVPVATQAQPPILP 448

Query: 438 L--PSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDE 495
           L  PS    KP GA   T +   G RGR RGRG+  SR  T+FTEDFDFIAMNEKF KDE
Sbjct: 449 LPVPSRASHKPNGA---TFHARHGYRGRERGRGSGSSRPVTKFTEDFDFIAMNEKFKKDE 505

Query: 496 VWGHLGKSNKA----LDDG-----DNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNR 546
           VWGHLGK+NK+     +DG     D+ +DE++   +K E  PVY KDDFFD++SC+AL  
Sbjct: 506 VWGHLGKNNKSHSKDREDGNASGEDDSQDEDENELAKIE--PVYNKDDFFDTISCNALGN 563

Query: 547 GSHNGRPRFSEQVRRDTETFGDFPRY 572
            S NGR RFSEQ++ DTETFGDF RY
Sbjct: 564 DSQNGRTRFSEQMKLDTETFGDFTRY 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499741|ref|XP_003518695.1| PREDICTED: uncharacterized protein LOC100808030 [Glycine max]

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 297/595 (49%), Positives = 358/595 (60%), Gaps = 84/595 (14%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           YIGSLISLTSKSEIRYEG+L+NINTEESSIGLRN R    +G +K GPQ+PPSDK+YEYI
Sbjct: 16  YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPSDKVYEYI 75

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRG+DIK                                 DLQVKSSPPVQ T  ++ND
Sbjct: 76  LFRGTDIK---------------------------------DLQVKSSPPVQPTPQVNND 102

Query: 139 PAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQSHY      ST+LPS  +GSL DP+S T+QLGL    FQG  PLYQPGG++G+WG
Sbjct: 103 PAIIQSHYPFPVTTSTSLPSAVSGSLTDPSSHTTQLGLPGSNFQGPLPLYQPGGNIGSWG 162

Query: 198 SS-PMPTTNGAGLAM-PMYWQGFYGSPNGL-QGQQQPLLQPPPGLSMLPSMQQSMQYPAM 254
           +S P P  NG  LAM PMYWQG+YG+PNGL Q  QQ LLQPPPGLSM  SMQQ MQYP  
Sbjct: 163 ASPPAPNANGGRLAMPPMYWQGYYGAPNGLPQLHQQSLLQPPPGLSMPSSMQQPMQYPNF 222

Query: 255 NPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQ------------------ 296
            P LPT  SNLP        P  + P+S  T ++ S  LP                    
Sbjct: 223 TPPLPTVSSNLP------ELPSSLLPVSASTPSVTSASLPPNLPPAPSALPPAPSALPPA 276

Query: 297 --------SSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPL-NSGIDKTAVAP--V 345
                   S+ + S+     + +KA   +   A  +++LP +  L N   D  A+ P   
Sbjct: 277 PSALSPVPSATLASEIFPVSVANKAPNVSTSAAMLASNLPSLALLTNPARDINAIVPPIS 336

Query: 346 SEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQ 405
           S+  ++ G  +P+QS    S + V  S+SI  +   PSLVTPGQLL+PG   VSS+Q SQ
Sbjct: 337 SKSNAISGSSLPYQSVSQLSPAVVESSTSIHTETSAPSLVTPGQLLKPGPIIVSSAQPSQ 396

Query: 406 AAQKDVEVVQLSSSESAAAPPPAS-DVQEPILPLPSTT--ERKPYGAPTSTQYGYRGGRG 462
           A  KDVEVVQ+SS+ S     P S + Q PILPLP T+    +P GAPT T +     RG
Sbjct: 397 APHKDVEVVQVSSTSSPEPSVPVSVETQPPILPLPVTSRPNHRPGGAPTQTHHHGYSYRG 456

Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG--------DNYE 514
           RGRGRG    RS T+FTEDFDF AMNEKF KDEVWGHLGKS     D         ++Y+
Sbjct: 457 RGRGRGTGGFRSVTKFTEDFDFTAMNEKFKKDEVWGHLGKSKSHSKDNNGEENAFDEDYQ 516

Query: 515 DEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
           DE++   S  E KPVY KDDFFDSLS +     S NGR R+SEQ++ DTETFGD+
Sbjct: 517 DEDNDDVSNIEVKPVYNKDDFFDSLSSNMHGNASQNGRTRYSEQIKIDTETFGDY 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111756|ref|XP_002315966.1| predicted protein [Populus trichocarpa] gi|222865006|gb|EEF02137.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 303/603 (50%), Positives = 366/603 (60%), Gaps = 89/603 (14%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           Y+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R    +G +K GPQ+ PSDK+YEYI
Sbjct: 23  YVGSLISLTSKSEIRYEGILYNINTDESSIGLKNVRSFGTEGRKKDGPQILPSDKVYEYI 82

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRGSDIK                                 DLQVKSSPPVQ+   I+ND
Sbjct: 83  LFRGSDIK---------------------------------DLQVKSSPPVQSAPHINND 109

Query: 139 PAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQSHY +    ST  PS  +GSL D  S     G     FQG  PLYQPGGSLG WG
Sbjct: 110 PAIIQSHYPRPFATSTGFPSAVSGSLTDLGSHNGPGGQPAMNFQGGMPLYQPGGSLGTWG 169

Query: 198 SS-PMPTTNGAGLAMPMYWQGFYGSPNGL-QGQQQPLLQPPPGLSMLPSMQQSMQYPAMN 255
           +S P P  NG+GLAMPMYWQGFY  PNGL    QQ LL+PPPGL+M  SMQQ MQYP  N
Sbjct: 170 ASPPPPNANGSGLAMPMYWQGFYAPPNGLPHLHQQSLLRPPPGLAMPSSMQQPMQYPNFN 229

Query: 256 PSLPTGVSNLPASQL-AEHRPPLMPPIST-----------------GTLNLLS------- 290
            SL TG+SNLP   L     P    PIST                  +LN  S       
Sbjct: 230 TSLLTGISNLPGPNLPVSTLPSSNLPISTLQASLPDVLPPLLPGIASSLNFTSHSAVPST 289

Query: 291 -----PMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPL-NSGIDKTAVAP 344
                P++P  S+++ S++  +L+PDK  +  LPT     SLP++ PL  S  D   +AP
Sbjct: 290 LPSTVPLMP--SASLPSETLPSLMPDKIPSSALPTTNLGASLPVLSPLTTSSPDLNTIAP 347

Query: 345 VSEPK--SVPGPIMPFQSTVSESVSTVGMSSSILND--GIMPSLVTPGQLLQPGLPAVSS 400
               K  S+PGP MP+QST   + S V  S+S+  +    +PSLVTPGQLLQ G P V S
Sbjct: 348 PISNKLSSIPGPTMPYQSTAQSAPSGVLASNSLRTEIPTPIPSLVTPGQLLQSGSPIVPS 407

Query: 401 SQSSQAAQKDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTE--RKPYGAPTSTQYGYR 458
           +Q  Q A KDVEVV++S +   +  P  ++ Q PILPLP  T    KP GA   T     
Sbjct: 408 TQPVQTAHKDVEVVKVSPAPEPSV-PATTEAQPPILPLPFPTRASHKPNGA---TFNARH 463

Query: 459 GGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKA----LDDGD--- 511
           G  GRGRGRG   SR  T+FTEDFDF+AMNEKF KDEVWGHLGK+NK+     +DGD   
Sbjct: 464 GYHGRGRGRGYGSSRPLTKFTEDFDFMAMNEKFKKDEVWGHLGKNNKSHSKDREDGDVSG 523

Query: 512 --NYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
             +++DE++   +K E KPVY KDDFFD++SC+A +  S NGR RFSEQ++ DTETFGDF
Sbjct: 524 EDDFQDEDEDELAKVEAKPVYNKDDFFDTISCNARDLESQNGRTRFSEQMKLDTETFGDF 583

Query: 570 PRY 572
            RY
Sbjct: 584 SRY 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737880|emb|CBI27081.3| unnamed protein product [Vitis vinifera]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 299/573 (52%), Positives = 352/573 (61%), Gaps = 89/573 (15%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           YIGSLISLTSKSEIRYEGVL+NINTEESSIGLRN R    +G +K GPQVPPSDK+YEYI
Sbjct: 15  YIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVYEYI 74

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRGSDIK                                 DLQVKSSPPVQ T  I+ND
Sbjct: 75  LFRGSDIK---------------------------------DLQVKSSPPVQATPPINND 101

Query: 139 PAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGS 198
           PAIIQSHY + A  S +LPS    LP                     LYQPGG+LG+WG 
Sbjct: 102 PAIIQSHYPRPATTSASLPSTVSGLP---------------------LYQPGGNLGSWGP 140

Query: 199 SPMP-TTNGAGLAMPMYWQGFYGSPNGL-QGQQQPLLQPPPGLSMLPSMQQSMQYPAMNP 256
           +P P T NG+GL MPMYWQG+YG PNGL    QQ LL+PPP LSM P     MQYP  N 
Sbjct: 141 APPPPTANGSGLTMPMYWQGYYGPPNGLPHLHQQSLLRPPPVLSMPP-----MQYPGFNA 195

Query: 257 SLPTGVSNLPASQLAEHRPPLMPPISTGTLNL----LSPMLPAQSSAMISDSSTNLIPDK 312
           SL  G  NLP S L E+  PL+P  S+G+LNL    LSP     +    S++ ++L+P+K
Sbjct: 196 SLQPGAPNLPGSNLPEYSSPLLP-TSSGSLNLTSTSLSPSTLPSNLPSTSETLSSLMPNK 254

Query: 313 ASTQTLPTAAPSTSLPLVPPLN-SGIDKTAVAP--VSEPKSVPGPIMPFQSTVSESVSTV 369
               TLP+     SLPLV PLN S  +  A+AP   ++P +V GP +P+Q T+S+S+ +V
Sbjct: 255 VPNPTLPSVTLGISLPLVTPLNTSSSEINAIAPPISNKPNAVSGPTLPYQ-TISQSIPSV 313

Query: 370 GMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPAS 429
           G SS    +   PSLVTPGQLLQ G   +SSS SSQ A KDVEVVQ+SSS S  +  P S
Sbjct: 314 GTSSPNHPEIAAPSLVTPGQLLQSGPTTISSSPSSQTAHKDVEVVQVSSSASQESSVPVS 373

Query: 430 -DVQEPILPLP--STTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIA 486
            + Q PILPLP  S T +K  GAP   +        RGRGRG   SR  T+FTEDFDF+A
Sbjct: 374 AEAQPPILPLPVPSRTVQKLNGAPFQGR-----HGYRGRGRGTGGSRPVTKFTEDFDFMA 428

Query: 487 MNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSS----------KHENKPVYVKDDFF 536
           MNEKF KDEVWGHLGK NK+       + +                K E KP+Y KDDFF
Sbjct: 429 MNEKFKKDEVWGHLGKGNKSQSRDKEVDGKVSDEDDYEDEDDAELPKFEVKPIYNKDDFF 488

Query: 537 DSLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
           DSLSC+AL+  SHNGR RFSEQ++ DTETFGDF
Sbjct: 489 DSLSCNALDHDSHNGRTRFSEQMKIDTETFGDF 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566811|ref|XP_002524389.1| protein binding protein, putative [Ricinus communis] gi|223536350|gb|EEF38000.1| protein binding protein, putative [Ricinus communis]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 326/666 (48%), Positives = 403/666 (60%), Gaps = 112/666 (16%)

Query: 4   AATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEE 62
           +A  A  S S+ +ADSYIGSLISLTSKSEIRYEGVL+NINTEESSIGL+N R    +G +
Sbjct: 6   SANTASTSRSNSTADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLKNVRSFGTEGRK 65

Query: 63  KIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQ 122
           K GPQ+PPSDK+YEYILFRGSDIK                                 DLQ
Sbjct: 66  KDGPQIPPSDKVYEYILFRGSDIK---------------------------------DLQ 92

Query: 123 VKSSPPVQTTTS--IHNDPAIIQSHYSQAAIASTTLPSG-TGSLPDPTSQTSQLGLSRPP 179
           VKSSPP Q T +  I+NDPAIIQSHY +    S +LP   +GSL D     +Q+GL+   
Sbjct: 93  VKSSPPAQPTPTPPINNDPAIIQSHYPRPVATSASLPPAVSGSLSDIGPHNAQIGLTGSN 152

Query: 180 FQGNPPLYQPGGSLGAWGSSPMP-TTNGAGLAMPMYWQGFYGSPNGL-QGQQQPLLQPPP 237
           FQG  PLYQPGG++G WG+SP P + NG GLAMPMYWQG+Y  PNGL    QQ LL+PPP
Sbjct: 153 FQGGLPLYQPGGNIGTWGASPPPPSANGNGLAMPMYWQGYYAPPNGLPHLHQQSLLRPPP 212

Query: 238 GLSMLPSMQQSMQYPAMN------------PSLPTG--------VSNLPASQL------- 270
           GLSM P +QQ MQY + N            P+LPT          SNLPAS L       
Sbjct: 213 GLSMPPPIQQPMQYSSYNAPLHTGAPNLPGPNLPTSNLPVPNLPTSNLPASNLPTTNLPA 272

Query: 271 ---------AEHRPPLMPPIS-------TGTLNLLSP-----MLPA---------QSSAM 300
                    A + P  +P IS       TG+LNL S       LPA          S+++
Sbjct: 273 SNLPTTNLLASNLPVPLPDISSPLLSASTGSLNLASTSSAPSTLPATLPSTLPSVHSASL 332

Query: 301 ISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPL-NSGIDKTAVAPVSEPKS--VPGPIMP 357
            S++  +L+P+K  + TLP A  S SLP + PL +SG +   + P    KS  + GP +P
Sbjct: 333 ASETIPSLVPNKTPSSTLPAANLSPSLPALSPLTSSGPELNTIIPPLSNKSNAISGPTVP 392

Query: 358 FQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLS 417
           +QS +++  + V  S+S+  +   PSLVTPGQLLQ G   V++ Q  Q   KDVEVVQ+S
Sbjct: 393 YQS-IAQPTALVVPSNSLRTEAPTPSLVTPGQLLQSGPTTVTTLQPVQTVHKDVEVVQVS 451

Query: 418 SSESAA-APPPASDVQEPILPLP--STTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRS 474
           S+ S   + P  ++ Q PILPLP  +    KP GAP  ++ GYRG            S  
Sbjct: 452 STSSTEPSVPVVTEAQPPILPLPVPARASHKPNGAPFHSRQGYRGRERGRGTGN---SHP 508

Query: 475 ATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKA-LDDGDNYEDEEDVGS-----SKHENKP 528
            T+FTEDFDF+AMNEKF KDEVWGHLGKSNK   +DG   ++++         +K + KP
Sbjct: 509 VTKFTEDFDFMAMNEKFKKDEVWGHLGKSNKKDREDGKASDEDDSQEEDDDELNKIDTKP 568

Query: 529 VYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRYHGGRGGRGPYRGGRSR 588
           VY KDDFFD+LSC+AL+  S NGRP+FSEQ++ DTETFGDFPRY GGRGGRGP RGGRSR
Sbjct: 569 VYNKDDFFDTLSCNALDHDSQNGRPKFSEQLKIDTETFGDFPRYRGGRGGRGPPRGGRSR 628

Query: 589 GSYHGR 594
           GSYHGR
Sbjct: 629 GSYHGR 634

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
TAIR|locus:2011410	611	DCP5 "AT1G26110" [Arabidopsis	0.843	0.846	0.366	4.1e-65
TAIR|locus:2158470	571	DCP5-L "decapping 5-like" [Ara	0.474	0.509	0.294	3.2e-34
UNIPROTKB|G4MRF0	542	MGG_02405 "Uncharacterized pro	0.101	0.114	0.507	1.9e-16
ASPGD|ASPL0000061577	552	AN1055 [Emericella nidulans (t	0.097	0.108	0.5	2.3e-15
UNIPROTKB|A0A8M2	471	lsm14a-a "Protein LSM14 homolo	0.101	0.131	0.516	4.5e-15
UNIPROTKB|F1NEM2	463	LSM14A "Uncharacterized protei	0.101	0.133	0.5	6.9e-15
UNIPROTKB|Q68FI1	422	lsm14b-a "Protein LSM14 homolo	0.101	0.146	0.483	2.6e-14
MGI|MGI:3040677	385	Lsm14b "LSM14 homolog B (SCD6,	0.101	0.161	0.483	3.2e-14
UNIPROTKB|Q9BX40	385	LSM14B "Protein LSM14 homolog	0.101	0.161	0.483	4e-14
UNIPROTKB|Q566L7	382	lsm14b "Protein LSM14 homolog	0.101	0.162	0.483	4.6e-14

TAIR|locus:2011410 DCP5 "AT1G26110" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 206/562 (36%), Positives = 261/562 (46%)

Query:    24 LISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRG 82
             LISLTSKSEIRYEG+L+NINT+ESSIGL+N R    +G +K GPQVPPSDK+YEYILFRG
Sbjct:    21 LISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYILFRG 80

Query:    83 SDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQD-LQVKSSPPVQTTTSIHNDPAI 141
             +DIK  L       +  P  +   D    ++I+      +    S P   + S+ +    
Sbjct:    81 TDIKD-LQVKASPPVQPPASTINND---PAIIQSHYPSPMPTSGSLPSTASGSLPD---- 132

Query:   142 IQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLS-RPP--FQG--NPPLYQPGGSLGAW 196
             I SH  Q         +    L  P       G S +PP  +QG   PP   P G     
Sbjct:   133 ISSHNGQPGQHGMGFQNAM-PLYQPGGNLGSWGASPQPPMYWQGFYTPP---PNGLPQLH 188

Query:   197 GSSPMPTTNGAGLAMPMYWQGFYGSPNGXXXXXXXXXXXXXXXXXXXXXXQSMQYPAMNP 256
               S +   +G  L MP   Q     PN                        S  +P    
Sbjct:   189 QQSLIRPPHG--LPMPNSLQQPLQYPN--FNTPPPPTGSSSLQGSSLPEAPSSLFPFSTS 244

Query:   257 SLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQ 316
             S     S+LP         P +PP++  + +L S +  A S ++ S+ +  L+ +KA   
Sbjct:   245 SQMLAPSSLPF--------PGLPPVTLSS-SLQSTLQSAPSPSLASEMAPPLLSNKAPIT 295

Query:   317 TLPTAAPSTSLPLVPPLNS--GIDKTAVAPVS-EPKSVPGPIMPFQXXXXXXXXXXXXXX 373
               PT    T+L L   L++    + +   P+S +P  V GPI P Q              
Sbjct:   296 APPTLPQDTNL-LSFSLSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSS 354

Query:   374 XILNDGIMPSLVTPGQLLQPGLPXXXXXXXXXXXXKDVEVVQLXXXXXXXXXX-XXXDVQ 432
              I  D   P LVTPGQLLQ G              KDVEVVQ+              + Q
Sbjct:   355 SISQDKPKPLLVTPGQLLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQ 414

Query:   433 EPILPLPSTTE--RKPYGAPTSTQXXXXXXXXXXXXXXNELSRSATRFTEDFDFIAMNEK 490
              PILPLPS+    +KP G                       S    +FTEDFDF AMNEK
Sbjct:   415 PPILPLPSSARPTQKPNGHSFPNHNGYRGRGRGRGRGAGR-SHQVMKFTEDFDFTAMNEK 473

Query:   491 FNKDEVWGHLGKSNKALDDGDNYEDEEDVGSS---KHENKPVYVKDDFFDSLSCDALNRG 547
             FNKDEVWGHLGKS     DGD  +D   V  +   K E KPVY KDDFFDSLS + ++R 
Sbjct:   474 FNKDEVWGHLGKSTTL--DGDEDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRE 531

Query:   548 SHNGRPRFSEQVRRDTETFGDF 569
             S N RPRFSEQ + DTETFG+F
Sbjct:   532 SQNSRPRFSEQRKLDTETFGEF 553

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=IMP

GO:0033962 "cytoplasmic mRNA processing body assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2158470 DCP5-L "decapping 5-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
 Identities = 100/340 (29%), Positives = 148/340 (43%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGS 83
             ISL SK EIRYEG+L+++N ++S++GL+N R    +G +K GPQ+PP DK+Y+YILFRGS
Sbjct:    38 ISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDYILFRGS 97

Query:    84 DIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQ-VKSSPPVQTTTSIHNDPAII 142
             DIK   +  +  A S                R++IQ  Q V  SP  +   ++ +  +  
Sbjct:    98 DIKDLQVNPSPSAQS----------------RQEIQSEQDVNQSPHSRPAMTMSSPISGY 141

Query:   143 QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLS-RPPFQGNPPLYQPGGSL------GA 195
              S Y     +         S P P +Q S + LS +PP      L +   SL       A
Sbjct:   142 DSGYGLGRGSQWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTESPVSLIDSTQSNA 201

Query:   196 WGSSPMPT-TNG-----AGLAMPMYWQGFYGS---PNGXXXXXXXXX------XXXXXXX 240
               S P+P+   G     +G+ + M  +    S   PNG                      
Sbjct:   202 GSSMPIPSFVQGNKFASSGVPLGMMQKPVSSSSTIPNGPQIIDYFSSPIMGLVDDSSQVV 261

Query:   241 XXXXXXQSMQYPAMNPSLPTGVSNL---P--ASQLAEHRPPLMPPISTGTLNLLSPMLPA 295
                    S Q  + NPS P G + L   P  AS  +   PP    +S   +  + P  P 
Sbjct:   262 TRSPDVSSNQSYSSNPS-PLGQTQLHTPPGLASVSSNLSPPSEAQLSAPNIQKIYPSAPQ 320

Query:   296 QSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVP-PLN 334
                 ++ D  +N  P ++    LP  A S S P++P PL+
Sbjct:   321 AIGKVVYDPQSNH-PHRSIPHELPAVA-SNSAPVIPGPLS 358

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|G4MRF0 MGG_02405 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 157 (60.3 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
 Identities = 34/67 (50%), Positives = 47/67 (70%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEE----KIGPQVPPSDKIYEYIL 79
             ISL SKS+IRY GVL  IN+EES++ L N +    +G +    K   ++ PSD++YEYI+
Sbjct:     9 ISLISKSDIRYVGVLHEINSEESTVSLENVKSFGTEGRKRDAGKPAEEIAPSDQVYEYIV 68

Query:    80 FRGSDIK 86
             FRGSD+K
Sbjct:    69 FRGSDVK 75

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000061577 AN1055 [Emericella nidulans (taxid:162425)]

 Score = 137 (53.3 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
 Identities = 32/64 (50%), Positives = 43/64 (67%)

Query:    26 SLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIG-P--QVPPSDKIYEYILFRG 82
             +L SKS+IRY G L  IN E S+I L+N  +    E + G P  ++PPS  +YEYI+FRG
Sbjct:    12 NLISKSDIRYVGTLHEINPEASTIALQNV-VSYGTEGRRGNPDEELPPSSSVYEYIVFRG 70

Query:    83 SDIK 86
             SD+K
Sbjct:    71 SDVK 74

GO:0045947 "negative regulation of translational initiation" evidence=IEA

GO:0034063 "stress granule assembly" evidence=IEA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IEA

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0033962 "cytoplasmic mRNA processing body assembly" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA

UNIPROTKB|A0A8M2 lsm14a-a "Protein LSM14 homolog A-A" [Xenopus laevis (taxid:8355)]

 Score = 161 (61.7 bits), Expect = 4.5e-15, Sum P(4) = 4.5e-15
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+I+EYI+FRGSD
Sbjct:    12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYIIFRGSD 71

Query:    85 IK 86
             IK
Sbjct:    72 IK 73

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0017151 "DEAD/H-box RNA helicase binding" evidence=IPI

GO:0030529 "ribonucleoprotein complex" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

UNIPROTKB|F1NEM2 LSM14A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK+EIRYEG+L+ I+TE S++ L   R     +      +PP D+++EYI+FRGSD
Sbjct:    12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSD 71

Query:    85 IK 86
             IK
Sbjct:    72 IK 73

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0033962 "cytoplasmic mRNA processing body assembly" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q68FI1 lsm14b-a "Protein LSM14 homolog B-A" [Xenopus laevis (taxid:8355)]

 Score = 154 (59.3 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK++IRYEG+L+ I+TE S++ L   R     +       PP +++YEYI+FRGSD
Sbjct:    12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSD 71

Query:    85 IK 86
             IK
Sbjct:    72 IK 73

GO:0030529 "ribonucleoprotein complex" evidence=IPI

MGI|MGI:3040677 Lsm14b "LSM14 homolog B (SCD6, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK++IRYEG+L+ I+T+ S++ L   R     +       PP ++IYEYI+FRGSD
Sbjct:    14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSD 73

Query:    85 IK 86
             IK
Sbjct:    74 IK 75

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006417 "regulation of translation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9BX40 LSM14B "Protein LSM14 homolog B" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK++IRYEG+L+ I+T+ S++ L   R     +       PP ++IYEYI+FRGSD
Sbjct:    14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSD 73

Query:    85 IK 86
             IK
Sbjct:    74 IK 75

GO:0006417 "regulation of translation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q566L7 lsm14b "Protein LSM14 homolog B" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 154 (59.3 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query:    25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
             ISL SK++IRYEG+L+ I+TE S++ L   R     +       PP +++YEYI+FRGSD
Sbjct:    12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSD 71

Query:    85 IK 86
             IK
Sbjct:    72 IK 73

GO:0030529 "ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C658	DCP5_ARATH	No assigned EC number	0.4674	0.8352	0.8379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	613
cd01736	74	cd01736, LSm14_N, Like-Sm protein 14, N-terminal d	2e-27
pfam12701	81	pfam12701, LSM14, Scd6-like Sm domain	4e-26
pfam09532	100	pfam09532, FDF, FDF domain	2e-23
pfam14438	113	pfam14438, SM-ATX, SM domain found in Ataxin-2	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003

>gnl|CDD|212483 cd01736, LSm14_N, Like-Sm protein 14, N-terminal domain

 Score =  104 bits (263), Expect = 2e-27
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYE 76
             YIGS ISL SKS+IRYEG+L+ I+TE+S+I L+N R         G  +PPSD++Y+
Sbjct: 1  GTPYIGSKISLISKSDIRYEGILYTIDTEDSTIALKNVRSFGTEGRPTGRPIPPSDEVYD 60

Query: 77 YILFRGSDIK 86
          YI+FRGSDIK
Sbjct: 61 YIVFRGSDIK 70

LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles. Length = 74

>gnl|CDD|221724 pfam12701, LSM14, Scd6-like Sm domain

 Score =  101 bits (254), Expect = 4e-26
 Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 4/72 (5%)

Query: 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEE--KIGPQVPPSDKI 74
          A  YIGS ISL SKS+IRYEG+L++I+TEES+I L N R    G E  K   ++PPSD++
Sbjct: 1  ATDYIGSKISLISKSDIRYEGILYSIDTEESTITLANVR--SFGTEGRKTDGEIPPSDEV 58

Query: 75 YEYILFRGSDIK 86
          YEYI+FRGSDIK
Sbjct: 59 YEYIVFRGSDIK 70

The Scd6-like Sm domain is found in Scd6p from S. cerevisiae, Rap55 from the newt Pleurodeles walt, and its orthologs from fungi, animals, plants and apicomplexans. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is fused to the the Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p are found fused to the FDF domain. Length = 81

>gnl|CDD|220282 pfam09532, FDF, FDF domain

 Score = 94.9 bits (236), Expect = 2e-23
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 5/95 (5%)

Query: 478 FTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKH---ENKPVYVKDD 534
           F EDFDF + N KF+K EV+  + K ++  DDG+  E    + ++K+   E K    K  
Sbjct: 3   FEEDFDFESNNAKFDKQEVFEEIRKKDEIKDDGERLEKHTRLATNKNPLEEGKGYDKKKS 62

Query: 535 FFDSLSCDALNRG--SHNGRPRFSEQVRRDTETFG 567
           FFD++SC++ ++G  S    P + E+ R +TETFG
Sbjct: 63  FFDNISCESKDKGAGSGERSPDWREERRLNTETFG 97

The FDF domain, so called because of the conserved FDF at its N termini, is an entirely alpha-helical domain with multiple exposed hydrophilic loops. It is found at the C terminus of Scd6p-like SM domains. It is also found with other divergent Sm domains and in proteins such as Dcp3p and FLJ21128, where it is found N terminal to the YjeF-N domain, a novel Rossmann fold domain. Length = 100

>gnl|CDD|222754 pfam14438, SM-ATX, SM domain found in Ataxin-2

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 19 SYIGSLISLTSKSEIRYEGVLFNINTE-ESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEY 77
          + IG  + +T K+   YEG+    + E +  + L+  R+  K +       P   KI + 
Sbjct: 9  NLIGQRVEVTLKNGSVYEGIFHTASPEDDFGVVLKMARVLPKSDASG----PLRGKIVDT 64

Query: 78 ILFRGSDIKH 87
          ++    DI  
Sbjct: 65 LIIPSKDIVQ 74

SM domain found in Ataxin-2. Length = 113

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 38/217 (17%), Positives = 50/217 (23%), Gaps = 25/217 (11%)

Query: 159 GTGSLPDPTSQTSQLGLSRPPFQGNPPL--------YQPGGSLGAWGSSPMPTT--NGAG 208
           GT   P+P    +     +P       L         Q           P          
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP 186

Query: 209 LAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPAS 268
                  QG    P G     Q   +       LP+  Q+   P + P LP     L   
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246

Query: 269 QLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLP 328
           Q       + PP          P  P Q             P     Q  PT  P     
Sbjct: 247 QFPGLSQQMPPP----------PPQPPQQQQQPPQPQAQPPP-----QNQPTPHPGLPQG 291

Query: 329 LVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSES 365
              PL        +  V +P+         +  V  S
Sbjct: 292 QNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLS 328

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	613
KOG1073	361	consensus Uncharacterized mRNA-associated protein	100.0
PF12701	96	LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC	100.0
cd01736	74	LSm14_N LSm14 (also known as RAP55) belongs to a f	100.0
PF09532	104	FDF: FDF domain; InterPro: IPR019050 This motif is	99.73
cd00600	63	Sm_like The eukaryotic Sm and Sm-like (LSm) protei	97.49
PF14438	77	SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.	97.45
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	95.65
PF01423	67	LSM: LSM domain ; InterPro: IPR001163 This family	95.44
cd01737	62	LSm16_N LSm16 belongs to a family of Sm-like prote	95.32
cd01731	68	archaeal_Sm1 The archaeal sm1 proteins: The Sm pro	94.44
smart00651	67	Sm snRNP Sm proteins. small nuclear ribonucleoprot	94.44
cd01728	74	LSm1 The eukaryotic Sm and Sm-like (LSm) proteins	94.26
cd01722	68	Sm_F The eukaryotic Sm and Sm-like (LSm) proteins	93.93
cd01726	67	LSm6 The eukaryotic Sm and Sm-like (LSm) proteins	93.81
cd01719	72	Sm_G The eukaryotic Sm and Sm-like (LSm) proteins	93.73
PRK00737	72	small nuclear ribonucleoprotein; Provisional	93.64
cd01717	79	Sm_B The eukaryotic Sm and Sm-like (LSm) proteins	92.29
COG1958	79	LSM1 Small nuclear ribonucleoprotein (snRNP) homol	92.16
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	91.8
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	91.69
cd01723	76	LSm4 The eukaryotic Sm and Sm-like (LSm) proteins	91.38
cd01725	81	LSm2 The eukaryotic Sm and Sm-like (LSm) proteins	91.23
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	91.22
cd01727	74	LSm8 The eukaryotic Sm and Sm-like (LSm) proteins	90.56
cd01724	90	Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins	90.31
cd01729	81	LSm7 The eukaryotic Sm and Sm-like (LSm) proteins	90.14
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	89.89
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	89.59
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	89.0
cd01721	70	Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins	88.95
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	87.53
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	87.41
cd01733	78	LSm10 The eukaryotic Sm and Sm-like (LSm) proteins	87.34
COG4371	334	Predicted membrane protein [Function unknown]	85.93
KOG2945	365	consensus Predicted RNA-binding protein [General f	85.04
cd06168	75	LSm9 The eukaryotic Sm and Sm-like (LSm) proteins	83.06
cd01732	76	LSm5 The eukaryotic Sm and Sm-like (LSm) proteins	82.44
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	80.83
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	80.51

>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-39  Score=333.64  Aligned_cols=156  Identities=41%  Similarity=0.614  Sum_probs=126.7

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccccccccccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG   94 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK~~~~~~~~   94 (613)
                      .+++||||+||||||.|||||||||+||++||||+|+||| ||||||++++++||+.++|||||||||||||        
T Consensus         3 ~~t~yIGS~ISLISk~DIRYEGILy~in~qdSTlgLqnVRsfGTEgRk~~~pq~p~~~kVy~YIlFRGSDIK--------   74 (361)
T KOG1073|consen    3 LVTSYIGSFISLISKNDIRYEGILYTINLQDSTLGLQNVRSFGTEGRKTDGPQVPPDDKVYDYILFRGSDIK--------   74 (361)
T ss_pred             cccccccceeEEeecccceeeeEEEeccccccceehhheeecccccCCCCCCcCCCCccceeeEEecCcccc--------
Confidence            6899999999999999999999999999999999999999 9999999999999999999999999999999        


Q ss_pred             cCCCCCCcccccccceecccccCCCCceeecCCCCCCCCCCCCChhhhhccCCCccccccCCCC-CCCCCCCCCCCCCCC
Q 007191           95 DAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQL  173 (613)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~p~~~~~~~~~~dpai~~~~~~~pa~~s~s~Ps-~~g~~~~~ss~~~~~  173 (613)
                                               ||+||+.|+.+..-.++.+|+|..         .+++++ .+++.+..+.+..+.
T Consensus        75 -------------------------DL~V~~~p~~~~~~~~p~~pp~p~---------~~~~~s~~s~~~~~~s~~~~~~  120 (361)
T KOG1073|consen   75 -------------------------DLIVQETPAGQIPCSLPVPPPMPP---------QSSIPSQQSGSDPKISFQFAQA  120 (361)
T ss_pred             -------------------------eeeeccCcccCccccccCCCCCCc---------ccccccccCCcccccccccccC
Confidence                                     999999877655556677777722         233443 456666777777665


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 007191          174 GLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSP  222 (613)
Q Consensus       174 g~~~p~f~~~~P~yqPg~~~g~wg~sp~p~an~~glaMpmYwqGyy~pp  222 (613)
                      +.+.-.+...++.++|...+|+|.....+         |++|.|+...+
T Consensus       121 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~  160 (361)
T KOG1073|consen  121 GNPVIGNPQGLITTNPVPAEGSIYGSFQP---------PSQPPGGFADS  160 (361)
T ss_pred             CCcccCCcCccccCCCCccccccccccCC---------cccCCCCcCCC
Confidence            55555666677889999999999988743         35676655443

>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A

Probab=100.00  E-value=1e-34  Score=255.09  Aligned_cols=93  Identities=54%  Similarity=0.916  Sum_probs=71.7

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccccccccccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG   94 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK~~~~~~~~   94 (613)
                      ++++|||++||||||++|||||+||+||++++||+|+||| ||||||+++. +|||++++|+||+|||+|||        
T Consensus         2 m~~~~IGs~ISlisk~~iRYeG~L~~Id~~~sTItL~nVr~~GtE~R~~~~-~ipp~~~v~~~I~Fr~sDIk--------   72 (96)
T PF12701_consen    2 MADPYIGSKISLISKSDIRYEGILYSIDTEDSTITLKNVRSFGTEGRPTDR-EIPPSDEVYDYIVFRGSDIK--------   72 (96)
T ss_dssp             -CCCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEETTETTSS-SS----C-CSSSSEEEEETTTEE--------
T ss_pred             ccccccCCEEEEEECCCcEEEEEEEEEcCCCCEEEeeeeeecCcCCCCcCc-ccCCCCceeeEEEEEccccc--------
Confidence            5789999999999999999999999999999999999999 9999999875 89999999999999999999        


Q ss_pred             cCCCCCCcccccccceecccccCCCCceeecCCCCCCCCCCCCChhhhhcc
Q 007191           95 DAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSH  145 (613)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~p~~~~~~~~~~dpai~~~~  145 (613)
                                               ||+|++.++.   ...++|||||+++
T Consensus        73 -------------------------dL~v~e~~~~---~~~~~dpAiv~~~   95 (96)
T PF12701_consen   73 -------------------------DLKVIEPPPP---PPAPQDPAIVSVS   95 (96)
T ss_dssp             -------------------------EEEECE-S-S---SSS----------
T ss_pred             -------------------------eEEEEcCCCC---CCCCCCCceeecC
Confidence                                     9999998754   4579999999864

>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=100.00  E-value=2.5e-33  Score=235.86  Aligned_cols=70  Identities=60%  Similarity=1.058  Sum_probs=68.1

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      |.+|||++||||||+||||||+||+||++++||+|+||| ||||||+.++++|||+++|||||||||+|||
T Consensus         1 ~~~~IG~~isLISk~~iRYeGiL~~In~~~sTi~L~nVr~fGTEgR~~~~~~ipp~~~vyd~IvFrgsDIk   71 (74)
T cd01736           1 VTPYIGSKISLISKSDIRYEGILYTINTEDSTIALKNVRSFGTEGRPTDGPEIPPSDEVYDYIVFRGSDIK   71 (74)
T ss_pred             CccccCceEEEEecCCcEEEEEEEeeccccCEEEeeeeEeecccCCCCCCCccCCCCcceeEEEEcCCccc
Confidence            468999999999999999999999999999999999999 9999999887789999999999999999999

Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.

>PF09532 FDF: FDF domain; InterPro: IPR019050 This motif is found in the C-terminal region of Sm-like proteins []

Probab=99.73  E-value=5.8e-20  Score=160.76  Aligned_cols=94  Identities=37%  Similarity=0.650  Sum_probs=42.0

Q ss_pred             ccccccccHHHHhhhhchhhhhhcccCCCCcCCCC-CC---CccccccCCCCCCCCCcccc-cchhcccccccccCCCCC
Q 007191          476 TRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG-DN---YEDEEDVGSSKHENKPVYVK-DDFFDSLSCDALNRGSHN  550 (613)
Q Consensus       476 ~kF~eDFDFea~NeKFnKDEv~g~LgK~~~~~~De-dD---~~ee~~~e~~~~e~k~~YdK-~sFFDnIScn~ldr~GRn  550 (613)
                      ++|++||||+++|+||+|++||.+|.+........ ..   ...+...+........+|+| ++|||+|||+.++|....
T Consensus         1 ik~~~DFDFes~NakF~K~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~k~~sfFDnIS~e~~~~~~~~   80 (104)
T PF09532_consen    1 IKFDEDFDFESANAKFDKEEVFKELKKKDEKDEEDRLVSENKEEEEAEEENENDEEKYYDKKKSFFDNISCEAKDRSEGN   80 (104)
T ss_dssp             SSSSS---HCCCCCTSSCCHHCCHHHCC--------------------------------B--B-------EEE-TT--E
T ss_pred             CCCcCccCHHHHHHHhccccchhhhhcccccccccccccccccccccccccccCcccccccccccCcCCCcccccccCCc
Confidence            58999999999999999999999987764322111 00   01111112222344567777 899999999999875433


Q ss_pred             C-CC---cccccccCccCccCCC
Q 007191          551 G-RP---RFSEQVRRDTETFGDF  569 (613)
Q Consensus       551 ~-Rl---dfseeRk~dtETFG~~  569 (613)
                      + |.   +|.++|++|+||||..
T Consensus        81 ~~~~~~~~~~eer~~n~ETFG~~  103 (104)
T PF09532_consen   81 GPRRSGDDWREERKLNTETFGQS  103 (104)
T ss_dssp             EE---HHHHHHHHHHH-HHTT--
T ss_pred             CCCcchhhHHHHHHhcccccCCC
Confidence            2 33   4999999999999974

Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks.; PDB: 4A53_A 2WAX_B 3D3K_A 2WAY_B 3D3J_A.

>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.49  E-value=0.0002  Score=57.08  Aligned_cols=58  Identities=17%  Similarity=0.361  Sum_probs=50.2

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..+.+..|+|+|..+| +...|.|+|+. +.++          .....++.++.||+.|+
T Consensus         2 ~~~~g~~V~V~l~~g~~~~G~L~~~D-~~~Ni~L~~~~~~~~~----------~~~~~~~~~~irG~~I~   60 (63)
T cd00600           2 KDLVGKTVRVELKDGRVLEGVLVAFD-KYMNLVLDDVEETIKE----------GKKRVLGLVLIRGDNVR   60 (63)
T ss_pred             hHHCCCEEEEEECCCcEEEEEEEEEC-CCCCEEECCEEEEecC----------CcEEECCeEEEECCEEE
Confidence            46899999999999999999999999 55599999999 8876          23455778999999998

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1

Probab=97.45  E-value=7e-05  Score=62.98  Aligned_cols=66  Identities=23%  Similarity=0.430  Sum_probs=43.2

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCC--CCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTE--ESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e--~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+||+++.+..|.+-+|||||+..+++  +..|.|+.+| -.++....   .-+-..++-+.++|+++||-
T Consensus         8 ~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk~a~~~~~~~~~~---~~~~~~~~~~tlii~~~dvv   76 (77)
T PF14438_consen    8 TNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLKMARKVPKSDQSN---SDPLSSEIVETLIIPAKDVV   76 (77)
T ss_dssp             HTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEEEEEETTS---------EEEEEEE-GGGEEE-----
T ss_pred             HhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEEeeeecccccccc---CCccCCCCCceEEEeccccC
Confidence            4579999999999999999999999998  8999999999 66554432   23456788889999999985

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=95.65  E-value=0.01  Score=70.08  Aligned_cols=9  Identities=33%  Similarity=0.442  Sum_probs=3.9

Q ss_pred             CCCChhhhh
Q 007191          135 IHNDPAIIQ  143 (613)
Q Consensus       135 ~~~dpai~~  143 (613)
                      +..||++-+
T Consensus       603 ~~~dd~~~~  611 (1282)
T KOG0921|consen  603 ILCDPSYNE  611 (1282)
T ss_pred             cccChhhcc
Confidence            344444443

>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins

Probab=95.44  E-value=0.026  Score=45.83  Aligned_cols=59  Identities=20%  Similarity=0.382  Sum_probs=48.5

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..+.+..|+|+|..+|. .--|.|+||. .-.+++         ....+..++.||+.|.
T Consensus         4 ~~~~g~~V~V~l~~g~~~~G~L~~~D~-~~Nl~L~~~~~~~~~~~---------~~~~~~~~~irG~~I~   63 (67)
T PF01423_consen    4 QKLIGKRVRVELKNGRTYRGTLVSFDQ-FMNLVLSDVTETIKNGP---------EKRSLGLVFIRGSNIR   63 (67)
T ss_dssp             HHTTTSEEEEEETTSEEEEEEEEEEET-TEEEEEEEEEEEETTES---------EEEEEEEEEEEGGGEE
T ss_pred             HHhCCcEEEEEEeCCEEEEEEEEEeec-hheEEeeeEEEEECCCC---------cEeECcEEEEECCEEE
Confidence            468999999999999999999999994 6779999998 654433         3344577889999987

In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....

>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=95.32  E-value=0.048  Score=45.67  Aligned_cols=56  Identities=23%  Similarity=0.456  Sum_probs=45.2

Q ss_pred             cccccceeEEEecCCce-eEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIR-YEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IR-YeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..|||+-+||-...++- |.|.+..||.++-||.|.+-- -|-            ..++-| ++||.-|||
T Consensus         2 ~dWiGs~VSI~C~~~lGVyQG~i~~V~~~~qTI~l~~~~~ngi------------k~~~~E-Vt~~~~DI~   59 (62)
T cd01737           2 QDWLGSIVSINCGETLGVYQGLVSAVDQESQTISLAFPFHNGV------------KCLVPE-VTFRAGDIR   59 (62)
T ss_pred             CcccceEEEEecCCceEEEEEEEEEeCccceEEEEeecccCCc------------cccCce-EEEEEcchh
Confidence            57999999999998884 999999999999999998722 222            222333 899999999

Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.

>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences

Probab=94.44  E-value=0.084  Score=43.74  Aligned_cols=58  Identities=12%  Similarity=0.253  Sum_probs=46.7

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..|.+-.|+|+|..+|. .--|.|+|+. +-.++          ...-+..++.||+.|.
T Consensus         6 ~~~~~~~V~V~l~~g~~~~G~L~~~D~-~mNlvL~~~~e~~~~~----------~~~~lg~~~iRG~~I~   64 (68)
T cd01731           6 KDSLNKPVLVKLKGGKEVRGRLKSYDQ-HMNLVLEDAEEIDDGE----------PVRKYGRVVIRGDNVL   64 (68)
T ss_pred             HHhcCCEEEEEECCCCEEEEEEEEECC-cceEEEeeEEEEecCC----------eEeEcCcEEEeCCEEE
Confidence            468999999999999999999999995 6778999987 54322          1223567899999987

They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.

>smart00651 Sm snRNP Sm proteins

Probab=94.44  E-value=0.07  Score=43.20  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=47.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-+.+..|+|+|..+|. .-.|.|+|+. .-.+.         .....++.++.||+.|.
T Consensus         4 ~~~~~~~V~V~l~~g~~~~G~L~~~D~-~~NlvL~~~~e~~~~~---------~~~~~~~~~~IrG~~I~   63 (67)
T smart00651        4 KKLIGKRVLVELKNGREYRGTLKGFDQ-FMNLVLEDVEETVKDG---------EKKRKLGLVFIRGNNIV   63 (67)
T ss_pred             HHhCCcEEEEEECCCcEEEEEEEEECc-cccEEEccEEEEecCC---------cEEeEeCCEEEcCCEEE
Confidence            468999999999999999999999994 6889999987 55432         12334556888999887

small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing

>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=94.26  E-value=0.11  Score=44.47  Aligned_cols=62  Identities=11%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      -..||+++|.++-|.+-.|.|+|..+| +...|.|.|+. +-.++-+ .      .+.....+++||..|-
T Consensus         7 L~~~l~k~v~V~l~~gr~~~G~L~~fD-~~~NlvL~d~~E~~~~~~~-~------~~~~lG~~viRG~~V~   69 (74)
T cd01728           7 LVDDLDKKVVVLLRDGRKLIGILRSFD-QFANLVLQDTVERIYVGDK-Y------GDIPRGIFIIRGENVV   69 (74)
T ss_pred             HHHhcCCEEEEEEcCCeEEEEEEEEEC-CcccEEecceEEEEecCCc-c------ceeEeeEEEEECCEEE
Confidence            457899999999999999999999999 67789999997 5544311 0      1234678999999886

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=93.93  E-value=0.14  Score=42.69  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +- .     +.    ....++.++-||+.|.
T Consensus         7 ~~~~g~~V~V~Lk~g~~~~G~L~~~D-~~mNi~L~~~~e~~-~-----~~----~~~~lg~~~IRG~~I~   65 (68)
T cd01722           7 NDLTGKPVIVKLKWGMEYKGTLVSVD-SYMNLQLANTEEYI-D-----GK----STGNLGEVLIRCNNVL   65 (68)
T ss_pred             HHcCCCEEEEEECCCcEEEEEEEEEC-CCEEEEEeeEEEEe-C-----Cc----cccCcCcEEEECCEEE
Confidence            45799999999999999999999999 67889999986 42 1     11    1234677899999987

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.

>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=93.81  E-value=0.13  Score=42.58  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=46.6

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+.-|+|+|..+| ..--|.|+|+. +-..+          ....++.++-||+.|.
T Consensus         6 ~~~~~~~V~V~Lk~g~~~~G~L~~~D-~~mNlvL~~~~~~~~~~----------~~~~~~~v~IRG~~I~   64 (67)
T cd01726           6 KAIIGRPVVVKLNSGVDYRGILACLD-GYMNIALEQTEEYVNGQ----------LKNKYGDAFIRGNNVL   64 (67)
T ss_pred             HhhCCCeEEEEECCCCEEEEEEEEEc-cceeeEEeeEEEEeCCc----------eeeEeCCEEEECCEEE
Confidence            35799999999999999999999999 67889999987 43211          1224677999999987

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=93.73  E-value=0.14  Score=43.38  Aligned_cols=60  Identities=17%  Similarity=0.305  Sum_probs=48.8

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....||+++|.++-|.+..|+|+|..+| +---|.|+||. +-- +     .    ....+.-++-||+.|.
T Consensus         4 ~L~~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~E~~~-~-----~----~~~~lg~v~IRG~~I~   64 (72)
T cd01719           4 ELKKYMDKKLSLKLNGNRKVSGILRGFD-PFMNLVLDDAVEVNS-G-----G----EKNNIGMVVIRGNSIV   64 (72)
T ss_pred             hhHHhCCCeEEEEECCCeEEEEEEEEEc-ccccEEeccEEEEcc-C-----C----ceeEeceEEECCCEEE
Confidence            3467999999999999999999999999 77889999997 531 1     1    1235677999999998

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>PRK00737 small nuclear ribonucleoprotein; Provisional

Probab=93.64  E-value=0.13  Score=43.29  Aligned_cols=58  Identities=14%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..|.+--|+|+|..+|. .--|.|+|+. +-.+      .    ...-++.++.||+.|.
T Consensus        10 ~~~~~k~V~V~lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~~------~----~~~~lg~v~iRG~~V~   68 (72)
T PRK00737         10 NNALNSPVLVRLKGGREFRGELQGYDI-HMNLVLDNAEEIQDG------E----VVRKLGKVVIRGDNVV   68 (72)
T ss_pred             HHhCCCEEEEEECCCCEEEEEEEEEcc-cceeEEeeEEEEcCC------C----eEeEcCcEEEeCCEEE
Confidence            467999999999999999999999996 7789999987 5321      1    1134677999999987

>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=92.29  E-value=0.34  Score=41.41  Aligned_cols=70  Identities=13%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....|||++|.+.-+.+=.|+|+|..+| +...|.|.|+. +-++.+...........-.+.-++.||..|.
T Consensus         4 ~l~~~l~~~V~V~l~dgR~~~G~L~~~D-~~~NlVL~~~~E~~~~~~~~~~~~~~~~~r~lG~v~iRG~~Vv   74 (79)
T cd01717           4 KMLQLINYRLRVTLQDGRQFVGQFLAFD-KHMNLVLSDCEEFRKVKKKKSKNSEREEKRTLGLVLLRGENIV   74 (79)
T ss_pred             hhHHHcCCEEEEEECCCcEEEEEEEEEc-CccCEEcCCEEEEEeccccccccccCcceeEeeeEEEcCCEEE
Confidence            4578999999999999999999999999 56779999998 7765543210101111224677999999887

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]

Probab=92.16  E-value=0.38  Score=40.96  Aligned_cols=60  Identities=18%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-ccc-CCCCCCCCCCCCCCCcee-eEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQ-KGEEKIGPQVPPSDKIYE-YILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGT-EgR~~~~~~Ipps~~vye-yIvFrgsDIK   86 (613)
                      ..+++++|.+.-|.+..|.|+|..+|. .--|.|.||. ... +++..        ...+. .++.||+.|+
T Consensus        13 ~~~~~~~V~V~lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~~~~~~~--------~~~~~~~~~IRG~~I~   75 (79)
T COG1958          13 KKLLNKRVLVKLKNGREYRGTLVGFDQ-YMNLVLDDVEEIISHDGEKN--------VRRLGGEVLIRGDNIV   75 (79)
T ss_pred             HHhhCCEEEEEECCCCEEEEEEEEEcc-ceeEEEeceEEEeccCCccc--------cceeccEEEEECCcEE
Confidence            568999999999999999999999995 4568899998 665 33221        23333 7999999998

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=91.80  E-value=0.13  Score=58.61  Aligned_cols=8  Identities=63%  Similarity=1.252  Sum_probs=4.1

Q ss_pred             CCCCCCCC
Q 007191          591 YHGRGYGY  598 (613)
Q Consensus       591 y~GRGygy  598 (613)
                      |||++|||
T Consensus       394 ~~~~~~~~  401 (578)
T TIGR01648       394 YYGDYYGY  401 (578)
T ss_pred             ccCccccc
Confidence            35555554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=91.69  E-value=0.31  Score=52.98  Aligned_cols=9  Identities=33%  Similarity=0.663  Sum_probs=4.7

Q ss_pred             cCCCCCCCC
Q 007191          431 VQEPILPLP  439 (613)
Q Consensus       431 ~q~PlLPlP  439 (613)
                      ...|||-.|
T Consensus       186 ~~~PLlKkp  194 (465)
T KOG3973|consen  186 RSHPLLKKP  194 (465)
T ss_pred             cCCchhcCc
Confidence            345666544

>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=91.38  E-value=0.41  Score=40.77  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+|++|.+.-|.+..|+|+|..+|. .-.|.|+||. ...+|.+     +    ..++.++-||+.|+
T Consensus         8 ~~~g~~V~VeLkng~~~~G~L~~~D~-~mNi~L~~~~~~~~~g~~-----~----~~~~~v~IRG~~I~   66 (76)
T cd01723           8 TAQNHPMLVELKNGETYNGHLVNCDN-WMNIHLREVICTSKDGDK-----F----WKMPECYIRGNTIK   66 (76)
T ss_pred             hcCCCEEEEEECCCCEEEEEEEEEcC-CCceEEEeEEEECCCCcE-----e----eeCCcEEEeCCEEE
Confidence            46899999999999999999999994 7789999998 5444322     1    12466899999998

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=91.23  E-value=0.58  Score=40.50  Aligned_cols=59  Identities=19%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+|++|.+--|.+..|+|+|..+|. .--|.|+||. ...++-        ..-..++.|..||+.|+
T Consensus         8 ~l~g~~V~VeLKng~~~~G~L~~vD~-~MNi~L~n~~~~~~~~~--------~~~~~~~~v~IRG~~I~   67 (81)
T cd01725           8 TLVGKEVTVELKNDLSIRGTLHSVDQ-YLNIKLTNISVTDPEKY--------PHMLSVKNCFIRGSVVR   67 (81)
T ss_pred             hCCCCEEEEEECCCcEEEEEEEEECC-CcccEEEEEEEEcCCCc--------ccccccCeEEEECCEEE
Confidence            35899999999999999999999995 5579999998 543221        11233578999999999

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=91.22  E-value=0.2  Score=59.73  Aligned_cols=11  Identities=18%  Similarity=0.090  Sum_probs=6.1

Q ss_pred             ccccCccCccC
Q 007191          557 EQVRRDTETFG  567 (613)
Q Consensus       557 eeRk~dtETFG  567 (613)
                      -.|+.+--+||
T Consensus      1181 gyRRGgssysg 1191 (1282)
T KOG0921|consen 1181 GYRRGGSSYSG 1191 (1282)
T ss_pred             ccccCCCCCCC
Confidence            34555555665

>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=90.56  E-value=0.51  Score=39.95  Aligned_cols=62  Identities=15%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-c--ccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-L--EQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-f--GTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....||+++|.++-+.+-.|+|+|..+|.. --|.|.++. +  .++    .+.    ....+..|+.||+.|-
T Consensus         3 ~L~~~l~~~V~V~l~dgr~~~G~L~~~D~~-~NlvL~~~~E~~~~~~----~~~----~~~~lG~~~iRG~~I~   67 (74)
T cd01727           3 TLEDYLNKTVSVITVDGRVIVGTLKGFDQA-TNLILDDSHERVYSSD----EGV----EQVVLGLYIIRGDNIA   67 (74)
T ss_pred             hHHHhcCCEEEEEECCCcEEEEEEEEEccc-cCEEccceEEEEecCC----CCc----eeeEeceEEECCCEEE
Confidence            456899999999999999999999999965 678899875 3  221    110    1235788999999987

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=90.31  E-value=0.63  Score=41.22  Aligned_cols=57  Identities=12%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      .++|+.|.+--|.+..|+|+|..+|. .--|.|+||. +-.++.          ..-|+.++.||+.|+
T Consensus         8 ~l~g~~V~VeLKng~~~~G~L~~vD~-~MNl~L~~a~~~~~~~~----------~~~~~~v~IRG~nI~   65 (90)
T cd01724           8 KLTNETVTIELKNGTIVHGTITGVDP-SMNTHLKNVKLTLKGRN----------PVPLDTLSIRGNNIR   65 (90)
T ss_pred             hCCCCEEEEEECCCCEEEEEEEEEcC-ceeEEEEEEEEEcCCCc----------eeEcceEEEeCCEEE
Confidence            46899999999999999999999994 5689999998 543221          134788999999999

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=90.14  E-value=0.88  Score=39.43  Aligned_cols=67  Identities=10%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      -..||+++|.++-|.+-.|+|+|..+|. ---|.|.|+. +-.+.-.  ...+.-....+..++.||..|-
T Consensus         7 L~~~i~k~V~V~l~~gr~~~G~L~~~D~-~mNlvL~~~~E~~~~~~~--~~~~~~~~~~lG~v~iRG~nV~   74 (81)
T cd01729           7 LSKYVDKKIRVKFQGGREVTGILKGYDQ-LLNLVLDDTVEYLRDPDD--PYKLTDKTRQLGLVVCRGTSVV   74 (81)
T ss_pred             HHHhcCCeEEEEECCCcEEEEEEEEEcC-cccEEecCEEEEEccCCc--ccccccceeEccEEEEcCCEEE
Confidence            4578999999999999999999999994 6678899986 4322111  1111223345788999999987

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=89.89  E-value=0.32  Score=52.88  Aligned_cols=9  Identities=44%  Similarity=0.612  Sum_probs=3.4

Q ss_pred             CCCCCCCCC
Q 007191          580 GPYRGGRSR  588 (613)
Q Consensus       580 Gg~rGg~gR  588 (613)
                      ||+|+|+||
T Consensus       436 gggr~gggr  444 (465)
T KOG3973|consen  436 GGGRDGGGR  444 (465)
T ss_pred             CCCCCCCCC
Confidence            333333334

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=89.59  E-value=0.39  Score=53.11  Aligned_cols=14  Identities=57%  Similarity=0.900  Sum_probs=5.9

Q ss_pred             CCCCCCCCCCCCCC
Q 007191          575 GRGGRGPYRGGRSR  588 (613)
Q Consensus       575 GrGGRGg~rGg~gR  588 (613)
                      ||++++|+||++||
T Consensus       377 ~~~~~~g~~~~~gr  390 (419)
T KOG0116|consen  377 GRGNRGGGRGPGGR  390 (419)
T ss_pred             cccCCCCCCCCCCC
Confidence            44444444443333

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=89.00  E-value=0.95  Score=51.94  Aligned_cols=16  Identities=19%  Similarity=0.374  Sum_probs=6.2

Q ss_pred             cccccccHHHHhhhhc
Q 007191          477 RFTEDFDFIAMNEKFN  492 (613)
Q Consensus       477 kF~eDFDFea~NeKFn  492 (613)
                      +|++.-|-+++-+++|
T Consensus       275 eF~s~e~A~kAi~~ln  290 (578)
T TIGR01648       275 HFEDREDAVKAMDELN  290 (578)
T ss_pred             EeCCHHHHHHHHHHhC
Confidence            3333334344333333

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=88.95  E-value=0.98  Score=37.98  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=47.1

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...+|+.|.+--|.+..|.|+|..+|. .-.|.|+||. ...+|+.          .-++.++-||+.|+
T Consensus         6 ~~~~g~~V~VeLk~g~~~~G~L~~~D~-~MNl~L~~~~~~~~~g~~----------~~~~~v~IRG~nI~   64 (70)
T cd01721           6 HEAEGHIVTVELKTGEVYRGKLIEAED-NMNCQLKDVTVTARDGRV----------SQLEQVYIRGSKIR   64 (70)
T ss_pred             hhCCCCEEEEEECCCcEEEEEEEEEcC-CceeEEEEEEEECCCCcE----------eEcCcEEEeCCEEE
Confidence            356899999999999999999999996 7789999997 4433321          23577999999998

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=87.53  E-value=1  Score=40.52  Aligned_cols=12  Identities=50%  Similarity=0.985  Sum_probs=5.7

Q ss_pred             CCCCCCCCCCCC
Q 007191          588 RGSYHGRGYGYA  599 (613)
Q Consensus       588 RGgy~GRGygy~  599 (613)
                      +|+|.|.|+|+.
T Consensus        73 gGgygGgG~G~~   84 (95)
T PF07172_consen   73 GGGYGGGGGGYG   84 (95)
T ss_pred             CCCCCCCCCCCC
Confidence            345555444443

Some of them may be involved in resistance to environmental stress [].

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=87.41  E-value=0.65  Score=47.06  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007191          583 RGGRSRGSYHGRGYGYAPRGRGYGYGM  609 (613)
Q Consensus       583 rGg~gRGgy~GRGygy~gRg~g~~~~~  609 (613)
                      .+.+.||+|.|+|.|.+|+|+.++-|-
T Consensus        85 ~s~~~~G~y~gggrgGgg~gg~rgpps  111 (241)
T KOG0105|consen   85 SSSDRRGSYSGGGRGGGGGGGRRGPPS  111 (241)
T ss_pred             cccccccccCCCCCCCCCCCcccCCcc
Confidence            444556677777777677777776443

>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=87.34  E-value=1.4  Score=38.09  Aligned_cols=58  Identities=17%  Similarity=0.367  Sum_probs=46.2

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...+|+.|.+--|.+..|.|+|.++|. .-.|.|+||. ....+.          ..-++.|+-||+.|+
T Consensus        15 ~~l~g~~V~VeLKng~~~~G~L~~vD~-~MNl~L~~~~~~~~~~~----------~~~~~~v~IRG~nI~   73 (78)
T cd01733          15 QGLQGKVVTVELRNETTVTGRIASVDA-FMNIRLAKVTIIDRNGK----------QVQVEEIMVTGRNIR   73 (78)
T ss_pred             HHCCCCEEEEEECCCCEEEEEEEEEcC-CceeEEEEEEEEcCCCc----------eeECCcEEEECCEEE
Confidence            346899999999999999999999994 5689999998 532111          114788999999998

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.

>COG4371 Predicted membrane protein [Function unknown]

Probab=85.93  E-value=1  Score=47.46  Aligned_cols=33  Identities=42%  Similarity=0.870  Sum_probs=21.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007191          566 FGDFPRYHGGRGGRGPYRGGRSRGSYHGRGYGY  598 (613)
Q Consensus       566 FG~~~r~rGGrGGRGg~rGg~gRGgy~GRGygy  598 (613)
                      |+-.+.+-++|.+||+-+|+|+.|+|-|.|||.
T Consensus        58 fraps~~sr~YS~~gpsGGgY~gg~Y~GGGfgf   90 (334)
T COG4371          58 FRAPSGYSRGYSGGGPSGGGYSGGGYSGGGFGF   90 (334)
T ss_pred             CCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcCc
Confidence            433344445666777777777777888888874

>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]

Probab=85.04  E-value=1.5  Score=47.91  Aligned_cols=27  Identities=26%  Similarity=0.323  Sum_probs=13.7

Q ss_pred             CCCCCCCCc-cccccccccccHHHHhhh
Q 007191          464 GRGRGNELS-RSATRFTEDFDFIAMNEK  490 (613)
Q Consensus       464 GrGrg~~~~-k~~~kF~eDFDFea~NeK  490 (613)
                      |+||++... .+.+.-+.+||+..-+++
T Consensus       164 G~Grg~~g~~~~~~~~krEf~r~sgsDr  191 (365)
T KOG2945|consen  164 GGGRGNWGDDGDDITGKREFDRQSGSDR  191 (365)
T ss_pred             CccCCCCCccccccccceeeeeeccccc
Confidence            445555543 222222357887765544

>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=83.06  E-value=3.1  Score=35.80  Aligned_cols=65  Identities=14%  Similarity=0.277  Sum_probs=48.1

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...|||+++.++-+.+--|+|+|..+|. ..-|.|.|+. |-+....    ........+..|+-||..|.
T Consensus         5 L~~~l~~~v~V~l~dgR~~~G~l~~~D~-~~NivL~~~~E~~~~~~~----~~~~~~r~lGlv~IrG~~Iv   70 (75)
T cd06168           5 LRSLLGRTMRIHMTDGRTLVGVFLCTDR-DCNIILGSAQEYRPPPDS----FSPTEPRVLGLVMIPGHHIV   70 (75)
T ss_pred             HHHhcCCeEEEEEcCCeEEEEEEEEEcC-CCcEEecCcEEEEcccCc----cCCccEEEeeeEEEeCCeEE
Confidence            3578999999999999999999999994 5668899986 4322111    11122335778999999887

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=82.44  E-value=3.6  Score=35.47  Aligned_cols=61  Identities=26%  Similarity=0.360  Sum_probs=46.2

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+++++|.+..|.+-.|+|+|..+| +--.|.|+|+. += +  ..++.    ....+.-|+.||..|.
T Consensus         9 ~~~~~~~V~V~l~~gr~~~G~L~g~D-~~mNlvL~da~E~~-~--~~~~~----~~~~lg~v~iRG~nV~   70 (76)
T cd01732           9 DKCIGSRIWIVMKSDKEFVGTLLGFD-DYVNMVLEDVTEYE-I--TPEGR----KITKLDQILLNGNNIC   70 (76)
T ss_pred             HHhCCCEEEEEECCCeEEEEEEEEec-cceEEEEccEEEEE-E--cCCCc----eeeEcCeEEEeCCeEE
Confidence            34689999999999999999999999 46789999987 42 1  11111    1223677999999988

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=80.83  E-value=1.7  Score=48.23  Aligned_cols=8  Identities=38%  Similarity=0.597  Sum_probs=3.8

Q ss_pred             CCCCCCCC
Q 007191          586 RSRGSYHG  593 (613)
Q Consensus       586 ~gRGgy~G  593 (613)
                      .+|||++|
T Consensus       394 ~~~gg~~~  401 (419)
T KOG0116|consen  394 GGRGGGRG  401 (419)
T ss_pred             CCCCCCcC
Confidence            34555444

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=80.51  E-value=1.3  Score=41.68  Aligned_cols=27  Identities=7%  Similarity=0.030  Sum_probs=18.7

Q ss_pred             cchhcccccccccCCCCCCCCcccccccC
Q 007191          533 DDFFDSLSCDALNRGSHNGRPRFSEQVRR  561 (613)
Q Consensus       533 ~sFFDnIScn~ldr~GRn~RldfseeRk~  561 (613)
                      ..+.+.++...+  .+|..+++|+++|..
T Consensus        90 ~~Al~~lng~~i--~Gr~l~V~~a~~~~~  116 (144)
T PLN03134         90 TAAISEMDGKEL--NGRHIRVNPANDRPS  116 (144)
T ss_pred             HHHHHHcCCCEE--CCEEEEEEeCCcCCC
Confidence            466666666655  377788888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	613
2fb7_A	95	Nmr Solution Structure Of Protein From Zebra Fish D		1e-09
2vxe_A	88	Solution Structure Of The Lsm Domain Of Drosophila		4e-09

>pdb|2FB7|A Chain A, Nmr Solution Structure Of Protein From Zebra Fish Dr.13312 Length = 95

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
          ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P D+ +EYI+FRGSD
Sbjct: 22 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSD 81
Query: 85 IK 86
          IK
Sbjct: 82 IK 83

>pdb|2VXE|A Chain A, Solution Structure Of The Lsm Domain Of Drosophila Melanogaster Tral (Trailer Hitch) Length = 88

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
          ISL SK++IRYEG L+ ++ +E +I L + R     +     Q+ P  +IY+YILFRGSD
Sbjct: 16 ISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSD 75
Query: 85 IK 86
          IK
Sbjct: 76 IK 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	613
2fb7_A	95	SM-like protein, LSM-14_N (RAP55); DR.13312, BC055	100.0
2vxe_A	88	CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA	100.0
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	99.18
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	96.88
2rm4_A	103	CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-	96.19
4a53_A	125	EDC3; RNA binding protein; NMR {Schizosaccharomyce	95.19
1d3b_B	91	Protein (small nuclear ribonucleoprotein associat	95.06
1y96_A	86	Gemin6, SIP2, GEM-associated protein 6; SM fold, p	95.06
1i8f_A	81	Putative snRNP SM-like protein; beta barrel-like S	94.55
1i4k_A	77	Putative snRNP SM-like protein; core snRNP domain,	94.45
1d3b_A	75	Protein (small nuclear ribonucleoprotein SM D3); s	94.04
3s6n_G	76	Small nuclear ribonucleoprotein G; SMN complex, SM	94.04
1th7_A	81	SnRNP-2, small nuclear riboprotein protein; archae	93.94
4a53_A	125	EDC3; RNA binding protein; NMR {Schizosaccharomyce	93.74
1h64_1	75	SnRNP SM-like protein; SM fold, spliceosome, snRNP	93.7
4emk_C	113	U6 snRNA-associated SM-like protein LSM7; SM fold,	93.46
4emk_A	94	U6 snRNA-associated SM-like protein LSM5; SM fold,	93.35
2y9a_D	126	Small nuclear ribonucleoprotein SM D3; splicing-RN	93.15
1mgq_A	83	SM-like protein; LSM, RNA-binding, archea, RNA bin	92.94
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	92.72
2fwk_A	121	U6 snRNA-associated SM-like protein LSM5; structur	92.47
4emk_B	75	U6 snRNA-associated SM-like protein LSM6; SM fold,	92.1
4emh_A	105	Probable U6 snRNA-associated SM-like protein LSM4;	92.02
1m5q_A	130	SMAP3, small nuclear ribonucleoprotein homolog, SM	91.89
1ljo_A	77	Archaeal SM-like protein AF-SM2; snRNP, core snRNP	91.63
3bw1_A	96	SMX4 protein, U6 snRNA-associated SM-like protein	90.87
2wax_B	44	Enhancer of mRNA-decapping protein 3; DEAD-box pro	90.6
1n9r_A	93	SMF, small nuclear ribonucleoprotein F, snRNP-F, S	90.39
3s6n_F	86	Small nuclear ribonucleoprotein F; SMN complex, SM	89.18
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	86.79
4emg_A	93	Probable U6 snRNA-associated SM-like protein LSM3;	86.63
3d3j_A	306	Enhancer of mRNA-decapping protein 3; HEDC3, phosp	86.54
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	81.05

>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A

Probab=100.00  E-value=7.5e-36  Score=259.74  Aligned_cols=72  Identities=47%  Similarity=0.812  Sum_probs=65.5

Q ss_pred             CCCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           14 SGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        14 ~~~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ++.+.+|||++||||||+|||||||||+||++++||+|+||| ||||||++++ +|||+++|||||||||+|||
T Consensus        11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~-~ipp~~~vyeyIvFrGsDIK   83 (95)
T 2fb7_A           11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK   83 (95)
T ss_dssp             -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS-CCCSCCCCSSCEEECSTTEE
T ss_pred             CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC-ccCCCCcceeEEEEcCCCcc
Confidence            357899999999999999999999999999999999999999 9999999874 59999999999999999999

>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}

Probab=100.00  E-value=1.5e-34  Score=248.73  Aligned_cols=70  Identities=44%  Similarity=0.758  Sum_probs=67.5

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|||++||||||+|||||||||+||++++||+|+||| ||||||+++ ++|||+++|||||+|||+|||
T Consensus         7 ~~~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~-~~ipp~~~vy~yIvFrgsDIK   77 (88)
T 2vxe_A            7 GGLPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQ-FQIAPQSQIYDYILFRGSDIK   77 (88)
T ss_dssp             SSSCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCS-SCCCCCCSCEEEEEEETTTEE
T ss_pred             CCCcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCC-cccCCCCceeeEEEEccCCcc
Confidence            4599999999999999999999999999999999999999 999999976 679999999999999999999

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=104.66  Aligned_cols=59  Identities=22%  Similarity=0.425  Sum_probs=49.6

Q ss_pred             CCcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~I-RYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+.||||.|||.++.+| +|+|+|++||+.++||+|+|| |    |  ++. .+++.+    |+|++.||+
T Consensus         3 Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~-f----~--NG~-~~~s~e----Vtls~~DI~   62 (84)
T 2vc8_A            3 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP-F----H--NGV-KCLVPE----VTFRAGDIT   62 (84)
T ss_dssp             --CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE-E----E--TTE-ECSSSE----EEEEGGGCS
T ss_pred             ccccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh-h----h--CCC-CCCCcE----EEEEecChh
Confidence            458999999999999999 999999999999999999999 4    1  332 344444    999999999

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A

Probab=96.88  E-value=0.026  Score=56.38  Aligned_cols=70  Identities=9%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....||+++|.++-|.+-.|+|+|..+| +.--|.|+||. |=++..+......--.+..+..|+.||..|.
T Consensus         8 kL~klIdKrV~V~LkdGRel~GtLkgFD-q~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV   78 (231)
T 3pgw_B            8 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV   78 (231)
T ss_pred             HHHHhcCCeEEEEECCCcEEEEEEEEEc-ccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEE
Confidence            4678999999999999999999999999 57789999999 7653221110111123456778999999999

>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}

Probab=96.19  E-value=0.013  Score=51.85  Aligned_cols=57  Identities=19%  Similarity=0.415  Sum_probs=45.1

Q ss_pred             CcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~I-RYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      .+.|||+.|||-...++ -|.|.+..||.  .+|+|.+.- =|          ||-..++=| ++|+..||+
T Consensus         7 ~edwiG~~VSI~C~d~LGVyQG~I~~V~~--~~ItL~kaFrNG----------iplk~~~~E-VtLsa~DI~   65 (103)
T 2rm4_A            7 DQDWIGCAVSIACDEVLGVFQGLIKQISA--EEITIVRAFRNG----------VPLRKQNAE-VVLKCTDIR   65 (103)
T ss_dssp             SGGGTTCEEEEEECTTTCEEEEEEEEEET--TEEEEEEEEETT----------EECSCSSSC-EEEETTTEE
T ss_pred             ccceeceEEEEeeCCcceEeeEEEEEccc--ceeEEhhhhhcC----------cCcCCCCce-EEEEecchh
Confidence            46899999999999999 99999999994  559998754 44          332333333 899999999

>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A

Probab=95.19  E-value=0.019  Score=52.57  Aligned_cols=52  Identities=23%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      +..+|||++|.|.-|.+-+|.|+|..||...-|+.|+||...                   .+.++++||+
T Consensus         6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~s-------------------~~~I~asdI~   57 (125)
T 4a53_A            6 SVADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLANDS-------------------TKSIVTKDIK   57 (125)
T ss_dssp             CHHHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTTE-------------------EEEEEGGGEE
T ss_pred             cHHHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccccc-------------------cceeeccccc
Confidence            568999999999999999999999999988877777998411                   1188999999

>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A

Probab=95.06  E-value=0.036  Score=46.91  Aligned_cols=70  Identities=9%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....|||++|.+.-+.+-.|+|+|..+| +.--|.|+|+. |-+.-........-.....+..|+.||+.|.
T Consensus         8 ~L~~~~~k~V~V~l~~gr~~~G~L~~~D-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~   78 (91)
T 1d3b_B            8 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV   78 (91)
T ss_dssp             CCGGGTTSEEEEEETTCCEEEEEEEECC-TTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEE
T ss_pred             HHHHHcCCcEEEEECCCeEEEEEEEEEC-CCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEE
Confidence            5689999999999999999999999999 67889999998 7543111100000011234567999999999

>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}

Probab=95.06  E-value=0.038  Score=47.73  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...|||++|.++...+=.|+|+||++|+..-.|.|.|.               -.++-|--++-.|.-||
T Consensus        12 l~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---------------~~~~~~~~~iI~G~aI~   66 (86)
T 1y96_A           12 WQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---------------LEDGSMSVTGIMGHAVQ   66 (86)
T ss_dssp             HHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---------------CTTSCEEEEEECGGGEE
T ss_pred             HHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---------------ccCCeEEEEEEecceEE
Confidence            35799999999999999999999999999999999984               12444566777888888

>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*

Probab=94.55  E-value=0.036  Score=46.20  Aligned_cols=57  Identities=12%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +  ++.         ...-+..++.||+.|.
T Consensus        17 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~--~~~---------~~~~lg~v~iRG~~I~   74 (81)
T 1i8f_A           17 QDSIGKQVLVKLRDSHEIRGILRSFD-QHVNLLLEDAEEI--IDG---------NVYKRGTMVVRGENVL   74 (81)
T ss_dssp             HTTTTSEEEEEEGGGEEEEEEEEEEC-TTCCEEEEEEEEE--ETT---------EEEEEEEEEECGGGEE
T ss_pred             HHHCCCeEEEEEcCCcEEEEEEEEEc-CCCeeEEccEEEE--cCC---------cccCCCEEEECCCEEE
Confidence            57899999999999999999999999 67889999999 8  221         1234677999999998

>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*

Probab=94.45  E-value=0.047  Score=44.76  Aligned_cols=58  Identities=12%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++          ...-+..++.||+.|.
T Consensus        10 ~~~~~~~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~   68 (77)
T 1i4k_A           10 NRSLKSPVIVRLKGGREFRGTLDGYD-IHMNLVLLDAEEIQNGE----------VVRKVGSVVIRGDTVV   68 (77)
T ss_dssp             HTTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEEcCCCEEEEEEEEEc-CCCCeEEeeEEEEecCC----------cEeECCEEEECCCEEE
Confidence            56899999999999999999999999 67889999998 65321          1234677999999998

>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1

Probab=94.04  E-value=0.08  Score=43.68  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +-.++          ...-++.|+.||+.|.
T Consensus        11 ~~~~g~~V~VeLk~g~~~~G~L~~~D-~~MNl~L~~~~e~~~~~----------~~~~lg~v~IRG~nI~   69 (75)
T 1d3b_A           11 HEAEGHIVTCETNTGEVYRGKLIEAE-DNMNCQMSNITVTYRDG----------RVAQLEQVYIRGCKIR   69 (75)
T ss_dssp             HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEECTTS----------CEEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEECCCcEEEEEEEEEc-cceeEEEEeEEEECCCC----------cEEEcCeEEEeCCEEE
Confidence            46899999999999999999999999 66789999999 64222          1345778999999998

>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G

Probab=94.04  E-value=0.075  Score=43.81  Aligned_cols=60  Identities=13%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....|||++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++          ....+..++.||+.|.
T Consensus         8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D-~~mNlvL~~~~e~~~~~----------~~~~lg~v~iRG~~I~   68 (76)
T 3s6n_G            8 ELKKFMDKKLSLKLNGGRHVQGILRGFD-PFMNLVIDECVEMATSG----------QQNNIGMVVIRGNSII   68 (76)
T ss_dssp             ------CCEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEECCCC--------------CBSSEEECSSSEE
T ss_pred             HHHHhCCCeEEEEECCCcEEEEEEEEEC-CcceEEEeceEEEccCC----------cEeEcCEEEECCCeEE
Confidence            5678999999999999999999999999 57789999998 64321          1234667999999998

>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1

Probab=93.94  E-value=0.08  Score=44.00  Aligned_cols=59  Identities=19%  Similarity=0.349  Sum_probs=48.9

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++          ...-+..++.||+.|.
T Consensus        14 L~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~   73 (81)
T 1th7_A           14 LAESLNNLVLVKLKGNKEVRGMLRSYD-QHMNLVLSDSEEIQSDG----------SGKKLGTIVIRGDNVI   73 (81)
T ss_dssp             HHHHTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEECSSS----------CEEEEEEEEECGGGEE
T ss_pred             HHHhCCCeEEEEEcCCcEEEEEEEEEc-CCCCEEEccEEEEecCC----------ceeECCEEEECCCEEE
Confidence            357899999999999999999999999 67889999998 65321          1234677999999998

>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A

Probab=93.74  E-value=0.038  Score=50.65  Aligned_cols=27  Identities=37%  Similarity=0.631  Sum_probs=23.1

Q ss_pred             cccccccccHHHHhhhhchhhhhhccc
Q 007191          475 ATRFTEDFDFIAMNEKFNKDEVWGHLG  501 (613)
Q Consensus       475 ~~kF~eDFDFea~NeKFnKDEv~g~Lg  501 (613)
                      .+..+|||||+...++|+|..|..+|-
T Consensus        96 ~~d~~~dFDFq~nL~~FnKk~vF~ql~  122 (125)
T 4a53_A           96 SMDCDEEFDFAANLEKFDKKQVFAEFR  122 (125)
T ss_dssp             CSSSSSCCCCTBTTBCSSTTCCSSCCC
T ss_pred             ccccccccchhhhHHhhhHHHHHHHHh
Confidence            346899999999999999999987653

>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*

Probab=93.70  E-value=0.076  Score=43.37  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++          ...-+..++.||+.|.
T Consensus        10 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~   68 (75)
T 1h64_1           10 HRSLDKDVLVILKKGFEFRGRLIGYD-IHLNVVLADAEMIQDGE----------VVKRYGKIVIRGDNVL   68 (75)
T ss_dssp             HTTTTSEEEEEETTSEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHHCCCEEEEEECCCCEEEEEEEEEe-CCCCeEEeeEEEEeeCC----------ceeECCEEEECCCEEE
Confidence            57899999999999999999999999 67889999998 65321          2234667999999998

>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C

Probab=93.46  E-value=0.12  Score=46.25  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=46.5

Q ss_pred             CCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           15 GSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        15 ~~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..-..|||++|.++-+.+-.|+|+|..+| +.--|.|.||. |-++.-   +...--....+..|+.||..|.
T Consensus        26 ~~L~~~l~k~V~V~L~dGr~~~G~L~~fD-~~mNLVL~d~~E~~~~~~---~~~~~~~~r~lG~v~IRG~nIv   94 (113)
T 4emk_C           26 LDLSRYQDQRIQATFTGGRQITGILKGFD-QLMNLVLDDVEEQLRNPE---DGKLTGAIRKLGLVVVRGTTLV   94 (113)
T ss_dssp             ------CCSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEEC------------CCEEEEEEEEECTTTEE
T ss_pred             HHHHHHcCCcEEEEEeCCeEEEEEEEEEc-CcccEEEeeEEEEEcCCC---CcccccceeEccEEEECCCeEE
Confidence            34568999999999999999999999999 47789999998 654311   1111123445778999999998

>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A

Probab=93.35  E-value=0.13  Score=44.57  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..|+|++|.+.-|.+-.|+|+|..+| +---|.|+||. +-+++     .    ....+..|+.||+.|.
T Consensus        26 ~~~l~k~V~V~Lk~gr~~~G~L~gfD-~~mNlvL~d~~E~~~~~-----~----~~~~lg~v~IRG~nI~   85 (94)
T 4emk_A           26 DKCIGSNLWVIMKSEREFAGTLVGFD-DYVNIVLKDVTEYDTVT-----G----VTEKHSEMLLNGNGMC   85 (94)
T ss_dssp             HHTTTSEEEEEESSSEEEEEEEEEEC-TTCCEEEEEEEEEETTT-----C----CEEEEEEEEECSTTEE
T ss_pred             HHHcCCeEEEEECCCcEEEEEEEEEc-ccCCeEeeeEEEEecCC-----C----cEeEcCEEEEcCCEEE
Confidence            46899999999999999999999999 47789999998 76421     1    2456788999999998

>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D

Probab=93.15  E-value=0.19  Score=45.79  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+.-|.|+|..+| ..--|.|+||. +-.++     .     ..-++.|+.||+.|.
T Consensus        11 ~~~~gk~V~VeLknG~~~~G~L~~~D-~~MNi~L~dv~e~~~~g-----~-----~~~l~~v~IRGnnI~   69 (126)
T 2y9a_D           11 HEAEGHIVTCETNTGEVYRGKLIEAE-DNMNCQMSNITVTYRDG-----R-----VAQLEQVYIRGSKIR   69 (126)
T ss_dssp             HSCSSCEEEEEESSCCEEEEEEEEEC-TTSCEEEEEEEEECTTS-----C-----CEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEECCCcEEEEEEEEEc-CceEEEEeeEEEEcCCC-----c-----EeecccEEEeCCEEE
Confidence            46899999999999999999999999 57789999999 64322     1     346788999999999

>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A

Probab=92.94  E-value=0.075  Score=44.49  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=49.3

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      .-..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++          ...-+..++.||+.|.
T Consensus        19 ~L~~~~~~~V~V~Lk~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~IRG~~I~   79 (83)
T 1mgq_A           19 ALGNSLNSPVIIKLKGDREFRGVLKSFD-LHMNLVLNDAEELEDGE----------VTRRLGTVLIRGDNIV   79 (83)
T ss_dssp             HHHHTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHHHhCCCEEEEEEcCCcEEEEEEEEEC-CCceeEEccEEEEecCC----------cccCCCEEEECCCEEE
Confidence            4467899999999999999999999999 67889999998 65321          2234677999999987

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=92.72  E-value=0.18  Score=45.13  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +-.     +.     ...-++.|+.||+.|.
T Consensus         8 ~~~~gk~V~V~Lk~g~~~~G~L~~~D-~~MNlvL~d~~e~~~-----~~-----~~~~lg~v~IRG~nI~   66 (119)
T 1b34_A            8 MKLSHETVTIELKNGTQVHGTITGVD-VSMNTHLKAVKMTLK-----NR-----EPVQLETLSIRGNNIR   66 (119)
T ss_dssp             HTCTTCEEEEEETTCCEEEEEEEEEC-TTCCEEEEEEEEECT-----TS-----CCEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEEcCCCEEEEEEEEEc-ccceEEeccEEEecC-----CC-----ceeEcceEEEcCCeEE
Confidence            46899999999999999999999999 67789999999 731     11     1246788999999999

>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A

Probab=92.47  E-value=0.12  Score=46.37  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCC----CCC-CCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKI----GPQ-VPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~----~~~-Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..|||++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-++..+.+    +.+ .-.....+..|+.||+.|.
T Consensus        34 ~~~l~k~V~V~Lk~Gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv  107 (121)
T 2fwk_A           34 DKCIGNRIYVVMKGDKEFSGVLRGFD-EYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA  107 (121)
T ss_dssp             HHTBTSBCEEEETTTEEECCEEEEEC-TTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred             HHHcCCeEEEEECCCcEEEEEEEEEc-ccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEE
Confidence            47899999999999999999999999 67889999999 765422211    100 0001344678999999998

>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B

Probab=92.10  E-value=0.2  Score=41.11  Aligned_cols=58  Identities=19%  Similarity=0.423  Sum_probs=47.6

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+|. .--|.|+|+. +-. +     .    ....+..++.||+.|.
T Consensus        10 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~-~-----~----~~~~lg~v~iRG~~I~   68 (75)
T 4emk_B           10 NKVIGKKVLIRLSSGVDYKGILSCLDG-YMNLALERTEEYVN-G-----K----KTNVYGDAFIRGNNVL   68 (75)
T ss_dssp             HHTTTSEEEEECTTSCEEEEEEEEECT-TCEEEEEEEEEEET-T-----E----EEEEEEEEEEEGGGSS
T ss_pred             HHhCCCeEEEEEcCCcEEEEEEEEEcC-cceEEEccEEEEec-C-----C----cccEecEEEEcCCeEE
Confidence            468999999999999999999999994 7789999988 631 1     1    1235678999999998

>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}

Probab=92.02  E-value=0.19  Score=44.41  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      -..++|++|.+.-|.+..|+|+|..+|. .--|.|+||. +-.+|.         ...-++.|+.||+.|.
T Consensus        21 L~~~igk~V~V~Lk~G~~~~G~L~~~D~-~MNlvL~d~~e~~~dg~---------~~~~lg~v~IRG~nI~   81 (105)
T 4emh_A           21 LNATQGRPILVELKNGETFNGHLENCDN-YMNLTLREVIRTMPDGD---------KFFRLPECYIRGNNIK   81 (105)
T ss_dssp             -----CCEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEECTTSC---------EEEEEEEEEECGGGEE
T ss_pred             HHHhCCCEEEEEECCCCEEEEEEEEEcC-CceEEEEEEEEEccCCc---------eeeEcCeEEEeCCeEE
Confidence            4578999999999999999999999994 6789999998 643321         1234688999999999

>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1

Probab=91.89  E-value=0.22  Score=45.60  Aligned_cols=54  Identities=17%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +  .            ..-|..|+.||+.|.
T Consensus         6 ~~~igk~V~V~Lk~G~~~~G~L~~~D-~~MNlvL~d~~E~--~------------~~~lg~v~IRG~nI~   60 (130)
T 1m5q_A            6 NNLLGREVQVVLSNGEVYKGVLHAVD-NQLNIVLANASNK--A------------GEKFNRVFIMYRYIV   60 (130)
T ss_dssp             HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEECT--T------------CCEEEEEEECGGGEE
T ss_pred             HHhCCCeEEEEECCCcEEEEEEEEEc-ccceeEEeeEEEE--c------------CCEeceEEEeCCeEE
Confidence            46899999999999999999999999 67889999988 6  1            145778999999998

>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1

Probab=91.63  E-value=0.21  Score=40.96  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=48.1

Q ss_pred             cccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~-IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+ -.|+|+|..+| +.--+.|+||. +-..+          ...-+..++.||+.|.
T Consensus        11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~nI~   70 (77)
T 1ljo_A           11 KSMVGKIIRVEMKGEENQLVGKLEGVD-DYMNLYLTNAMECKGEE----------KVRSLGEIVLRGNNVV   70 (77)
T ss_dssp             HHTTTSEEEEEETTCSSEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHHCCCEEEEEEeCCCEEEEEEEEEEC-CcceEEEeeEEEEecCC----------cEeECCeEEEeCCeEE
Confidence            468999999999999 99999999999 67889999998 65311          1234677999999998

>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}

Probab=90.87  E-value=0.3  Score=42.09  Aligned_cols=66  Identities=12%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...+||++|.++-|.+-.|+|+|..+| +---|.|.|+. +=++.-+..   .-....-+..++.||+.|.
T Consensus        15 L~~~i~k~V~V~Lk~gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~---~~~~~r~lG~v~IRG~nVv   81 (96)
T 3bw1_A           15 LKLNLDERVYIKLRGARTLVGTLQAFD-SHCNIVLSDAVETIYQLNNEE---LSESERRCEMVFIRGDTVT   81 (96)
T ss_dssp             HGGGTTSEEEEEEGGGCEEEEEEEEEC-TTCCEEEEEEEEEEECCSTTC---CCEEEEEEEEEEECGGGEE
T ss_pred             HHHHCCCeEEEEECCCcEEEEEEEEEC-CCCcEEEcCEEEEeccccccc---cCcceeEcCEEEECCCEEE
Confidence            357999999999999999999999999 67889999998 654322110   1111233567899999998

>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B

Probab=90.60  E-value=0.059  Score=41.49  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             cccccHHHHhhhhchhhhhhcccC
Q 007191          479 TEDFDFIAMNEKFNKDEVWGHLGK  502 (613)
Q Consensus       479 ~eDFDFea~NeKFnKDEv~g~LgK  502 (613)
                      .+|||||...++|+|..||.++.+
T Consensus        17 ~~dFDFE~NLalFdKq~Vf~~~~~   40 (44)
T 2wax_B           17 DTDFDFEGNLALFDKAAVFEEIDT   40 (44)
T ss_dssp             SSCCCHHHHHTTCCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhHHHHHHHHhc
Confidence            699999999999999999977643

>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A

Probab=90.39  E-value=0.23  Score=42.85  Aligned_cols=60  Identities=13%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             CCcccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~-IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      --..++|++|.+.-|.+ ..|+|+|..+| +---|.|+||. +- ++.    .     ..-++.|+.||+.|.
T Consensus        25 ~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D-~~MNlvL~d~~E~~-~~~----~-----~~~lg~v~IRG~nI~   86 (93)
T 1n9r_A           25 FLKGLVNHRVGVKLKFNSTEYRGTLVSTD-NYFNLQLNEAEEFV-AGV----S-----HGTLGEIFIRCNNVL   86 (93)
T ss_dssp             -CGGGTTSEEEEEESSTTEEEEEEEEECC-TTTCEEEEEEEEEE-TTE----E-----EEECCSEEECGGGEE
T ss_pred             HHHHhCCCEEEEEEcCCCEEEEEEEEEEc-cccEEEEeeEEEEc-CCC----e-----EeEcCEEEEcCCeEE
Confidence            55789999999999999 99999999999 67889999998 63 211    0     123567999999998

>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F

Probab=89.18  E-value=0.37  Score=40.79  Aligned_cols=58  Identities=17%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+|. .--|.|+||. +- +|     .    ...-+..++.||+.|.
T Consensus        12 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~-~g-----~----~~~~lg~v~IRG~nI~   70 (86)
T 3s6n_F           12 NGLTGKPVMVKLKWGMEYKGYLVSVDG-YMNMQLANTEEYI-DG-----A----LSGHLGEVLIRCNNVL   70 (86)
T ss_dssp             HHHTTSEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEEE-TT-----E----EEEEESSEEECGGGEE
T ss_pred             HHhCCCeEEEEEcCCeEEEEEEEEEcC-ceEEEEeeEEEEc-CC-----c----eeeEccEEEEeCCeEE
Confidence            468999999999999999999999995 6789999998 63 11     1    1123567999999999

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=86.79  E-value=0.11  Score=46.24  Aligned_cols=26  Identities=8%  Similarity=0.119  Sum_probs=16.6

Q ss_pred             chhcccccccccCCCCCCCCcccccccC
Q 007191          534 DFFDSLSCDALNRGSHNGRPRFSEQVRR  561 (613)
Q Consensus       534 sFFDnIScn~ldr~GRn~RldfseeRk~  561 (613)
                      .+.+.|++..+  .++..+++|++.++.
T Consensus        96 ~Ai~~l~g~~~--~g~~l~V~~a~~~~~  121 (156)
T 1h2v_Z           96 NAMRYINGTRL--DDRIIRTDWDAGFKE  121 (156)
T ss_dssp             HHHHHTTTSEE--TTEECEEEEESCCCT
T ss_pred             HHHHHhCCCEE--CCeEEEEEECCCCCC
Confidence            45555555555  367778888876553

>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}

Probab=86.63  E-value=0.87  Score=39.08  Aligned_cols=67  Identities=13%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCC----CCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP----QVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~----~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+||++|.+.-|.+-.|+|+|..+| +.--|.|.|+. +-++-.+ ++.    ..-.....+..|+.||..|.
T Consensus        15 ~~~~~~~V~V~l~~gr~~~G~L~~~D-~~mNlvL~d~~E~~~~~~~-~~~~~~~~~~~~~r~lG~v~iRG~nVv   86 (93)
T 4emg_A           15 RLSLDEIVYVKLRGDRELNGRLHAYD-EHLNMVLGDAEEIVTIFDD-EETDKDKALKTIRKHYEMLFVRGDSVI   86 (93)
T ss_dssp             HTTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEEC---------------CEEEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEECCCcEEEEEEEEEC-CcccEEeecEEEEEecccc-CCccccccccccEeEeceEEECCCeEE
Confidence            45699999999999999999999999 57889999999 7654111 110    01122345778999999987

>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}

Probab=86.54  E-value=0.13  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=0.0

Q ss_pred             cccHHHHhhhhchhhhhhcccCC
Q 007191          481 DFDFIAMNEKFNKDEVWGHLGKS  503 (613)
Q Consensus       481 DFDFea~NeKFnKDEv~g~LgK~  503 (613)
                      |||||+..++|+|..||.+|.+.
T Consensus         1 dfdf~~nl~~fdk~~vf~e~~~~   23 (306)
T 3d3j_A            1 DFDFEGNLALFDKAAVFEEIDTY   23 (306)
T ss_dssp             -----------------------
T ss_pred             CcchhHHHHHhhhHHHHHHHhcc
Confidence            89999999999999999988654

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=81.05  E-value=0.32  Score=46.90  Aligned_cols=23  Identities=17%  Similarity=0.118  Sum_probs=12.8

Q ss_pred             chhcccccccccCCCCCCCCccccc
Q 007191          534 DFFDSLSCDALNRGSHNGRPRFSEQ  558 (613)
Q Consensus       534 sFFDnIScn~ldr~GRn~Rldfsee  558 (613)
                      .+.+.|++..+  .+|..+++|++.
T Consensus       127 ~Ai~~lng~~~--~Gr~l~V~~a~~  149 (229)
T 3q2s_C          127 KLMDLLPKREL--HGQNPVVTPVNK  149 (229)
T ss_dssp             HHHTTSTTSCB--TTBCCEEEECCH
T ss_pred             HHHHHcCCCeE--CCEEeEEEECCC
Confidence            44444444444  366677777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	613
d2vxfa1	80	b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebraf	1e-23

>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 80

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

 Score = 92.8 bits (231), Expect = 1e-23
 Identities = 34/67 (50%), Positives = 45/67 (67%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P D+ +EYI+
Sbjct: 2  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYII 61

Query: 80 FRGSDIK 86
          FRGSDIK
Sbjct: 62 FRGSDIK 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	613
d2vxfa1	80	LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio)	100.0
d1d3bb_	81	B core SNRNP protein {Human (Homo sapiens) [TaxId:	97.0
d1th7a1	76	Archaeal homoheptameric Sm protein {Sulfolobus sol	95.22
d1i8fa_	71	Archaeal homoheptameric Sm protein {Archaeon Pyrob	94.92
d1h641_	71	Archaeal homoheptameric Sm protein {Archaeon Pyroc	94.61
d2fwka1	92	U6 snRNA-associated sm-like protein LSM5 {Cryptosp	94.08
d1mgqa_	74	Archaeal homoheptameric Sm protein {Archaeon Metha	93.96
d1d3ba_	72	D3 core SNRNP protein {Human (Homo sapiens) [TaxId	93.94
d1i4k1_	72	Archaeal homoheptameric Sm protein {Archaeon Archa	93.88
d1ljoa_	75	Archaeal homoheptameric Sm protein {Archaeon Archa	92.99
d1b34a_	80	D1 core SNRNP protein {Human (Homo sapiens) [TaxId	92.45
d1m5q1_	127	Sm-Like archaeal protein Smap3 {Archaeon Pyrobacul	92.18
d1n9ra_	68	Small nuclear ribonucleoprotein F, Smf {Baker's ye	85.96
d1b34b_	93	D2 core SNRNP protein {Human (Homo sapiens) [TaxId	82.78

>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=2.1e-35  Score=248.08  Aligned_cols=67  Identities=51%  Similarity=0.864  Sum_probs=65.1

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      +|||++||||||+||||||+||+||++++||+|+||| ||||||++++ +|||+++|||||+|||+|||
T Consensus         1 pyIGs~IsLISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~-~ipp~~~vy~~IvFrgsDIK   68 (80)
T d2vxfa1           1 PYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK   68 (80)
T ss_dssp             CSTTSEEEEEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCSS-CCCCCCCCEEEEEEETTTEE
T ss_pred             CccCCEEEEEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCCC-ccCCCCcceeEEEEcCcCcc
Confidence            6999999999999999999999999999999999999 9999999774 69999999999999999999

>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: B core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00048  Score=55.83  Aligned_cols=70  Identities=9%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ....||+++|.++.+.+-.|+|+|..+| +..-|.|+|+. |-++..+......-........++.||..|-
T Consensus         2 ~L~~~l~~rv~V~l~dgR~~~G~L~~~D-~~~NlvL~~~~E~~~~~~~~~~~~~~~~~r~lG~v~IRG~~Iv   72 (81)
T d1d3bb_           2 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV   72 (81)
T ss_dssp             CCGGGTTSEEEEEETTCCEEEEEEEECC-TTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEE
T ss_pred             hhHHHCCCEEEEEEcCCCEEEEEEEEEC-CccCEEEcCEEEEEeecCccccccccceEEEeeeEEEeCCEEE
Confidence            4578999999999999999999999999 56779999999 8776665432211111123567999999998

>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.22  E-value=0.012  Score=46.87  Aligned_cols=59  Identities=17%  Similarity=0.328  Sum_probs=48.8

Q ss_pred             CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ...++|++|.+.-|.+..|.|+|..+|. .--|.|+||. +-.++.          ..-++.++.||+.|.
T Consensus        12 L~~~~~~~V~V~lk~g~~~~G~L~~~D~-~mNlvL~~~~e~~~~~~----------~~~~~~v~iRG~~I~   71 (76)
T d1th7a1          12 LAESLNNLVLVKLKGNKEVRGMLRSYDQ-HMNLVLSDSEEIQSDGS----------GKKLGTIVIRGDNVI   71 (76)
T ss_dssp             HHHHTTSEEEEEETTTEEEEEEEEEECT-TCCEEEEEEEEECSSSC----------EEEEEEEEECGGGEE
T ss_pred             HHHhCCCEEEEEECCCCEEEEEEEEECC-CCCEEEeEEEEEecCCc----------ccCcceEEEECCEEE
Confidence            4578999999999999999999999996 6689999998 543221          235788999999997

>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.92  E-value=0.011  Score=46.69  Aligned_cols=59  Identities=12%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      .-.+++|++|.++-|.+..|+|+|..+|. .--|.|+|+. +..+..           .-+..++.||+.|.
T Consensus         6 ~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNivL~~~~e~~~~~~-----------~~~g~v~iRG~~I~   65 (71)
T d1i8fa_           6 TLQDSIGKQVLVKLRDSHEIRGILRSFDQ-HVNLLLEDAEEIIDGNV-----------YKRGTMVVRGENVL   65 (71)
T ss_dssp             HHHTTTTSEEEEEEGGGEEEEEEEEEECT-TCCEEEEEEEEEETTEE-----------EEEEEEEECGGGEE
T ss_pred             HHHHhCCCEEEEEECCCCEEEEEEEEECC-CcceEEccEEEEECCCE-----------EEcceEEEeCCeEE
Confidence            34679999999999999999999999995 7789999997 643321           23567899999997

>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.61  E-value=0.019  Score=44.74  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..|.+-.|+|+|..+| +.--|.|+||. +-.++          ...-++.++.||+.|.
T Consensus         8 ~~~~~~~V~V~lk~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~----------~~~~l~~~~IRG~~I~   66 (71)
T d1h641_           8 HRSLDKDVLVILKKGFEFRGRLIGYD-IHLNVVLADAEMIQDGE----------VVKRYGKIVIRGDNVL   66 (71)
T ss_dssp             HTTTTSEEEEEETTSEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEEcCCCEEEEEEEEEC-CCCCeEEeeEEEEecCC----------cEeEcCcEEEECCeEE
Confidence            36899999999999999999999999 56789999998 53211          1234788999999997

>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: U6 snRNA-associated sm-like protein LSM5
species: Cryptosporidium parvum [TaxId: 5807]

Probab=94.08  E-value=0.025  Score=46.26  Aligned_cols=68  Identities=22%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCC-CC----CCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQ-VP----PSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~-Ip----ps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..+.+..|.|+|..+|. ..-|.|+|+. +.++..+..... -.    ....-+..|+.||..|-
T Consensus        11 ~~~l~k~V~V~l~~gr~~~G~L~~~D~-~~NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~~r~lg~~~iRG~~Vv   84 (92)
T d2fwka1          11 DKCIGNRIYVVMKGDKEFSGVLRGFDE-YVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA   84 (92)
T ss_dssp             HHTBTSBCEEEETTTEEECCEEEEECT-TCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred             HHHcCCEEEEEEcCCCEEEEEEEEEcC-CCCEEEeeEEEEEecCCccccccccccccccceeEcceEEEeCCEEE
Confidence            457899999999999999999999995 4579999999 776555422110 00    01123567999999997

>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.96  E-value=0.029  Score=44.18  Aligned_cols=58  Identities=21%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+..|.+-.|+|+|..+| +.--|.|+|+. +-.++          ...-++.++.||+.|.
T Consensus        12 ~~~~~k~V~V~lk~g~~~~G~L~~~D-~~mNl~L~~~~e~~~~~----------~~~~~~~~~IRG~~I~   70 (74)
T d1mgqa_          12 GNSLNSPVIIKLKGDREFRGVLKSFD-LHMNLVLNDAEELEDGE----------VTRRLGTVLIRGDNIV   70 (74)
T ss_dssp             HHTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred             HHhCCCeEEEEECCCCEEEEEEEEEC-CCCCeEEeeEEEEeCCC----------eEeEcceEEEeCCEEE
Confidence            46899999999999999999999999 56689999998 53211          1235788999999987

>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D3 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.039  Score=43.31  Aligned_cols=57  Identities=18%  Similarity=0.294  Sum_probs=47.5

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+|++|.+--|.+..|+|+|..+|. .-.|.|+|+. +-.+++          ...++-++-||+.|+
T Consensus         9 ~~~g~~V~VeLkng~~~~G~L~~~D~-~mNi~L~~~~~~~~~~~----------~~~~~~v~IRG~~I~   66 (72)
T d1d3ba_           9 EAEGHIVTCETNTGEVYRGKLIEAED-NMNCQMSNITVTYRDGR----------VAQLEQVYIRGCKIR   66 (72)
T ss_dssp             HTTTSEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEECTTSC----------EEEEEEEEECGGGEE
T ss_pred             hcCCCEEEEEECCCeEEEEEEEEEcC-CeeEEEEEEEEEcCCCc----------EeEcCeEEEECCEEE
Confidence            46899999999999999999999996 6899999998 643332          133677899999998

>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]

Probab=93.88  E-value=0.033  Score=43.62  Aligned_cols=58  Identities=12%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+-.|+|+|..+|. .--|.|+|+. +-.++.          ..-+..++.||+.|.
T Consensus         9 ~~~~~~~V~V~lk~g~~~~G~L~~~D~-~mNlvL~~~~e~~~~~~----------~~~~g~~~IRG~~I~   67 (72)
T d1i4k1_           9 NRSLKSPVIVRLKGGREFRGTLDGYDI-HMNLVLLDAEEIQNGEV----------VRKVGSVVIRGDTVV   67 (72)
T ss_dssp             HTTTTSEEEEEEGGGCEEEEEEEEECT-TCCEEEEEEEEESSSSE----------EEEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEECCCCEEEEEEEEEcC-CCCeEEeeEEEEecCCe----------EeEcceEEEeCCeEE
Confidence            368999999999999999999999995 6778999988 632211          234688999999987

>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]

Probab=92.99  E-value=0.047  Score=43.36  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=45.9

Q ss_pred             cccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~I-RYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+- .|+|+|..+| +.--|.|+|+. +-.++.          ..-++.++-||+.|.
T Consensus        11 ~~~~~~~V~V~lk~~~~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~----------~~~~g~~~IRG~~I~   70 (75)
T d1ljoa_          11 KSMVGKIIRVEMKGEENQLVGKLEGVD-DYMNLYLTNAMECKGEEK----------VRSLGEIVLRGNNVV   70 (75)
T ss_dssp             HHTTTSEEEEEETTCSSEEEEEEEEEC-TTCCEEEEEEEEEETTEE----------EEEEEEEEECGGGEE
T ss_pred             HHhcCCEEEEEEECCCEEEEEEEEEEc-CCCcEEEeEEEEEcCCCc----------EeEcceEEEeCCEEE
Confidence            4689999999999874 5999999999 55789999998 532221          234678999999987

>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D1 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.11  Score=41.59  Aligned_cols=57  Identities=14%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        19 ~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..+|++|.+--|.+..|+|+|..+|. .-.|.|+||. ...++.          ..-|+.+.-||+.|+
T Consensus         8 ~~~g~~V~VeLkng~~~~G~L~~~D~-~MNl~L~~~~~~~~~~~----------~~~~~~v~IRG~~Ir   65 (80)
T d1b34a_           8 KLSHETVTIELKNGTQVHGTITGVDV-SMNTHLKAVKMTLKNRE----------PVQLETLSIRGNNIR   65 (80)
T ss_dssp             TCTTCEEEEEETTCCEEEEEEEEECT-TCCEEEEEEEEECTTSC----------CEEEEEEEECGGGEE
T ss_pred             HcCCCEEEEEECCCCEEEEEEEEEcC-CcEEEEEEEEEEcCCCC----------EEEcccEEEcCCEEE
Confidence            46899999999999999999999996 6889999998 653322          125888999999999

>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Sm-Like archaeal protein Smap3
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.18  E-value=0.11  Score=45.44  Aligned_cols=55  Identities=16%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             cccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+.-|.+..|.|+|.++| ..-.|.|+||..-..             +-|..|+.||+.|+
T Consensus         6 ~~~~gk~V~VeLkng~~~~G~L~~~D-~~mNivL~da~~~~~-------------~k~~~v~IRG~~I~   60 (127)
T d1m5q1_           6 NNLLGREVQVVLSNGEVYKGVLHAVD-NQLNIVLANASNKAG-------------EKFNRVFIMYRYIV   60 (127)
T ss_dssp             HTTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEETTC-------------CEEEEEEECGGGEE
T ss_pred             HHhCCCEEEEEECCCCEEEEEEEEEC-CCceEEEeEEEECCC-------------CcccEEEEeCCeEE
Confidence            46899999999999999999999999 678999999862111             12666899999999

>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Small nuclear ribonucleoprotein F, Smf
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.96  E-value=0.29  Score=37.88  Aligned_cols=58  Identities=12%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             cccccceeEEEec-CCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191           18 DSYIGSLISLTSK-SEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        18 ~~~IGs~ISLISk-s~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK   86 (613)
                      ..++|++|.+-=| .+.-|+|+|..+| +.--|.|+|+. .-.++.          ...++.++.||+.|.
T Consensus         2 ~~~~~~~V~V~Lk~~~~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~----------~~~lg~~~IRG~nI~   61 (68)
T d1n9ra_           2 KGLVNHRVGVKLKFNSTEYRGTLVSTD-NYFNLQLNEAEEFVAGVS----------HGTLGEIFIRCNNVL   61 (68)
T ss_dssp             GGGTTSEEEEEESSTTEEEEEEEEECC-TTTCEEEEEEEEEETTEE----------EEECCSEEECGGGEE
T ss_pred             hhHCCCEEEEEEEcCCEEEEEEEEEEC-CcCceEEeeEEEEecCCc----------ccCcCeEEEECCEEE
Confidence            3589999999999 5577999999999 45678999988 432221          124667899999998

>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D2 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.9  Score=37.05  Aligned_cols=64  Identities=9%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             cceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCC-C-CC--CCCCCceeeEEEEcCccc
Q 007191           22 GSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIG-P-QV--PPSDKIYEYILFRGSDIK   86 (613)
Q Consensus        22 Gs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~-~-~I--pps~~vyeyIvFrgsDIK   86 (613)
                      +++|.++.+.+-.|+|+|...| +.--+.|.||. +-++..+... . +.  .-....+..++.||..|-
T Consensus        14 ~~rV~V~lr~~r~~~G~L~afD-~~~NlVL~d~~E~~~~~~~~~~~~~~~~~~~~~R~lg~~liRGdnVv   82 (93)
T d1b34b_          14 NTQVLINCRNNKKLLGRVKAFD-RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVI   82 (93)
T ss_dssp             TCEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEC-------------------CEEEEEEEECGGGEE
T ss_pred             CcEEEEEECCCCEEEEEEEEec-cceeEEeeceEEEEEecCCccccccccccceeEEEeceEEEeCCEEE
Confidence            7899999999999999999999 56779999999 7665544221 1 11  111224778999999886