Citrus Sinensis ID: 007193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.982 | 0.552 | 0.697 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.709 | 0.549 | 0.260 | 6e-36 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.650 | 0.436 | 0.279 | 2e-35 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.694 | 0.464 | 0.273 | 4e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.737 | 0.750 | 0.258 | 9e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.681 | 0.659 | 0.248 | 1e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.681 | 0.747 | 0.248 | 1e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.647 | 0.630 | 0.259 | 2e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.696 | 0.571 | 0.261 | 2e-34 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.738 | 0.722 | 0.237 | 4e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/602 (69%), Positives = 505/602 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AA 607
A
Sbjct: 981 AG 982
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 209/449 (46%), Gaps = 14/449 (3%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCIIG--MCSRRYEKARTL 464
GV P+++ + I+ +RR A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
P++V + + +G C + R E A + E ++ N RP E +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 207/443 (46%), Gaps = 16/443 (3%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCIIGMC---SRRYEKARTL 464
V + +I SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 218/472 (46%), Gaps = 19/472 (4%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
F++L+ C + + A + L++E G + ++T ++ +++ + + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217
Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+ G ++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277
Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
A +++EM ++ PD T ++ N G RA EV + + + + Y I
Sbjct: 278 GARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNI 332
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
I CS GD E A + D+M K+G++P + LI K+EAA +++E + +G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I + ++Y+ L+ + +KA L++ M + ++PT T +LI LC ++ +
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
E+ + G+ P+ + + L+ +++ LL + + P+ V + C++ G+
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512
Query: 454 CSR-RYEKARTL----------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 501
C ++E+AR L +H+ S+N+ K T A MV E + G PT
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.990 | 0.537 | 0.771 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.539 | 0.764 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.982 | 0.388 | 0.764 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.908 | 0.837 | 0.782 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.520 | 0.737 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.544 | 0.706 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.982 | 0.552 | 0.697 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.982 | 0.552 | 0.697 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.982 | 0.552 | 0.697 | 0.0 | |
| 357473771 | 1173 | Pentatricopeptide repeat-containing prot | 0.926 | 0.484 | 0.730 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/607 (77%), Positives = 536/607 (88%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 600
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+VYLLTILKGL
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYLLTILKGL 1014
Query: 601 RHRLAAA 607
+HRLAA
Sbjct: 1015 KHRLAAG 1021
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/602 (76%), Positives = 531/602 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1005
Query: 606 AA 607
A
Sbjct: 1006 AG 1007
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/602 (76%), Positives = 531/602 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1440
Query: 606 AA 607
A
Sbjct: 1441 AG 1442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/557 (78%), Positives = 498/557 (89%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
Query: 591 VYLLTILKGLRHRLAAA 607
VY LTILKGL+HRLAA
Sbjct: 541 VYFLTILKGLKHRLAAG 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/568 (73%), Positives = 501/568 (88%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAA 607
DA++L TA+VYL+T+LKGL+HRLAA
Sbjct: 948 DAKELNASTAEVYLITVLKGLKHRLAAG 975
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/603 (70%), Positives = 521/603 (86%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRL 604
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+VYLLT+LKGL+HRL
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRL 997
Query: 605 AAA 607
AA
Sbjct: 998 AAG 1000
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/602 (69%), Positives = 505/602 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AA 607
A
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/602 (69%), Positives = 505/602 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AA 607
A
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/602 (69%), Positives = 505/602 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AA 607
A
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/568 (73%), Positives = 498/568 (87%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498 RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQV++L+++A L DCKLYTTLI+TC K GKVD MFEVFH+MVN+G+E
Sbjct: 558 SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678 IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738 SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
++YSSLMGACS AKNWQ+ALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVLS+
Sbjct: 798 MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGLCPN+IT+SIL+VA E+KDD+E MLLSQAK+DG P L+M +CIIGMC RR+E
Sbjct: 858 MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG PT +++S+VLGCL+ PY+
Sbjct: 918 KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
+R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K P+V+
Sbjct: 978 VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAA 607
DA++L+ TA+VYLLTILKGL+HRLAA
Sbjct: 1038 DAKELDAFTAEVYLLTILKGLKHRLAAG 1065
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 613 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.980 | 0.551 | 0.698 | 4.6e-231 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.769 | 0.784 | 0.261 | 1.1e-36 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.654 | 0.438 | 0.294 | 6.3e-35 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.663 | 0.772 | 0.278 | 7.4e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.597 | 0.726 | 0.280 | 1.2e-34 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.680 | 0.657 | 0.252 | 6.9e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.663 | 0.646 | 0.253 | 1.2e-33 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.696 | 0.571 | 0.264 | 5.5e-33 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.743 | 0.727 | 0.244 | 7.6e-33 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.662 | 0.637 | 0.251 | 1.1e-32 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2229 (789.7 bits), Expect = 4.6e-231, P = 4.6e-231
Identities = 420/601 (69%), Positives = 505/601 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 A 606
A
Sbjct: 981 A 981
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 130/498 (26%), Positives = 238/498 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----YR 491
P++V + ++ G C + R E A + E ++ N RP E +T L + YR
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVLIEGIGFAGYR 559
Query: 492 -EAI-VAGTIPTVEVVSK 507
EA+ +A + ++ +S+
Sbjct: 560 AEAMELANDLVRIDAISE 577
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 6.3e-35, P = 6.3e-35
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 7.4e-35, P = 7.4e-35
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 6.9e-34, P = 6.9e-34
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 5.5e-33, P = 5.5e-33
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 7.6e-33, P = 7.6e-33
Identities = 117/479 (24%), Positives = 224/479 (46%)
Query: 91 TLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
T ST F++L+ C + + A + L++E G + ++T ++ +++ +
Sbjct: 152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWV 211
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+ +M I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+
Sbjct: 212 FYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFS 271
Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
G ++ A +++EM ++ PD T ++ N G RA EV + + + +
Sbjct: 272 LRGRIEGARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPD 326
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
Y I I CS GD E A + D+M K+G++P + LI K+EAA +++
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
E + +GI + ++Y+ L+ G C + + +KA L++ M + ++PT T +LI LC
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG-DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
++ + E+ + G+ P+ + + L+ +++ LL + + P+ V +
Sbjct: 446 NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTY 505
Query: 448 KCII-GMCSR-RYEKARTLN----------EHVLSFNSGRPQIENKW-TSLALMVYREAI 494
C++ G+C ++E+AR L +H+ S+N+ K T A MV E +
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
G PT+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 613 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1143 bits (2958), Expect = 0.0
Identities = 457/583 (78%), Positives = 526/583 (90%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 564 FGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAA 606
G+VP VSFK+ P+V+DA +L + A+VYLLTILKGL+HRLAA
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAA 951
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 9e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.52 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.42 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.53 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.5 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.47 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.08 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.78 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.74 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.68 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.65 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.41 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.37 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.13 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.09 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.8 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.11 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.55 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.22 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.71 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.48 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.37 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.48 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.44 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.98 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.54 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.36 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.97 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.71 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 85.61 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.56 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.79 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 84.78 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.16 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.76 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.52 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.74 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.31 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.91 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.07 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-91 Score=759.00 Aligned_cols=585 Identities=78% Similarity=1.252 Sum_probs=569.3
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
.+...+...|+.|++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|+++|+.|+.||..+||.++++|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875567899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcH
Q 007193 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502 (613)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (613)
|++++|.++|++|.+.|+.||..+|++++++|.++|++|+.+.+....|+.+.+.....|+.+|+.+|++|++.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999998888999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHhhHHHhhCCChhhhhcccccccccccccchhHHHHHHHHHHhCCCCCcccccCCceeeccc
Q 007193 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582 (613)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~ 582 (613)
+||..+++|+....+...+..|.+.+++.|...+|..++++|+++|...++|+.++++|.+.|++|+..+....+++|+|
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~ 927 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE 927 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEcc
Confidence 99999999998888888999999999999999999999999999998778999999999999999999888889999999
Q ss_pred cCcchHHHHHHHHHHHHHHHhhHhh
Q 007193 583 KLEIHTAKVYLLTILKGLRHRLAAA 607 (613)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (613)
++++++|++++|+||+++++++++|
T Consensus 928 ~~~~~aa~~~l~~wl~~~~~~~~~g 952 (1060)
T PLN03218 928 ELPVFAAEVYLLTILKGLKHRLAAG 952 (1060)
T ss_pred cCcchhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=602.36 Aligned_cols=519 Identities=18% Similarity=0.294 Sum_probs=451.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhhH
Q 007193 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQK 75 (613)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~~ 75 (613)
.....+++.|++++|..+|++|.+.|+.|....+ ...++..+.+.|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 3445566899999999999999998764433222 233445567778
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH-------------------------
Q 007193 76 AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY------------------------- 130 (613)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~------------------------- 130 (613)
+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998888887766
Q ss_pred ----------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 131 ----------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 131 ----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
++||.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 556667777788888888888876 578888888888888888889999999999988999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
+.++.+|++.|+.+.|.+++..|.+. |+.||..+|++|+.+|++.|++++|.++|+.|.. ||..+||++|.+|+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999998874 7889999999999999999999999999999864 56689999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.+.+.|+.|+..+|++|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
+|++|. .+|..+|+++|.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.|+
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999997 58999999999999999999999999999986 5999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhH------------HHHHHHHHHHHcCCCCcHHHHHHH
Q 007193 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKV 508 (613)
Q Consensus 441 ~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~ 508 (613)
.+|..++|+||++|+ ++|++.++...|+.+ ..+...|+. .|+.+|++|.+.|+.||.+||..+
T Consensus 521 ~~~~~~~naLi~~y~----k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYV----RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHH----HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 999999999999955 477777777777776 566778886 499999999999999999999998
Q ss_pred H-hccCCCC---chhHHhhHHHhhCCChhhhhcccccccccccccch--hHHHHHHHHHHhCCCCCcccccCCceeec
Q 007193 509 L-GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVVD 580 (613)
Q Consensus 509 l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~a~~~g~~p~~~~~~~~~~~~ 580 (613)
+ +|++.+. +.++++.|.+.+|+.|+..||+ ++++.+||.+ ++|..++++| |..||..+|.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m---------~~~pd~~~~~ 661 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM---------PITPDPAVWG 661 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC---------CCCCCHHHHH
Confidence 7 5666654 4557888888999999999998 6888887642 4555555554 4555555554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=579.22 Aligned_cols=543 Identities=19% Similarity=0.296 Sum_probs=430.3
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (613)
+++.+||.++ +.|++++|+++|++|.+.|+.|+..++ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4566777766 799999999999999988876653332 34456
Q ss_pred HHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
..|.+.|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999888888888888888888888888888888888775 457777777777777777777777777777653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------
Q 007193 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----------- 297 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------- 297 (613)
++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++||++|++.|++++|.++|++|.+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 566666666666666666666666666666666666666555555555555555555555555544432
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 298 -------------------KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 298 -------------------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
.++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 2467777778888888888888888888888888888888888888888999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-H
Q 007193 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (613)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~ 437 (613)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9998887 489999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 007193 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (613)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~ 517 (613)
.|+.|+..+|++++++|++ +|.+.+ |..++++| +++||..+|..+++.|..+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999999665 444443 45556665 589999999999988888888
Q ss_pred hhHHhhHHHh-hCCChh-hhhcccccccccccccchhHHHHHHHHHHhCCCCCcc--cccC----CceeeccccCcchHH
Q 007193 518 ADIRERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV--SFKE----IPVVVDARKLEIHTA 589 (613)
Q Consensus 518 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~--~~~~----~~~~~~~~~~~~~~~ 589 (613)
.+..+...+. ..+.|+ +..|..+++++...|+|. +|.++.++|.+.|+.++. +++. -|.+......++...
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 7777666544 467776 455665667778889875 466999999999998653 3321 244455667788899
Q ss_pred HHHHHHHHHHHHHhhH-hhhh
Q 007193 590 KVYLLTILKGLRHRLA-AAIL 609 (613)
Q Consensus 590 ~~~~~~~~~~~~~~~~-~~~~ 609 (613)
+||- .|..+.+++. +||.
T Consensus 752 ~i~~--~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 752 EINT--VLEGFYEKMKASGLA 770 (857)
T ss_pred HHHH--HHHHHHHHHHhCCcC
Confidence 9886 6777755553 4543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=537.48 Aligned_cols=465 Identities=23% Similarity=0.398 Sum_probs=420.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHcCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 106 (613)
.++.+.+.|.+++|..+|+.|.. | +...+..++..|.+.|++++|.++|+.|. .||..+||++|.+|++.|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 34456689999999999999975 3 45566678888899999999999999875 689999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007193 187 IMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (613)
Q Consensus 187 ~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (613)
+|.. .|+.||.++|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9986 689999999999999999999999999999999975 789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (613)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--- 421 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 421 (613)
||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCccc-
Q 007193 422 --------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI- 478 (613)
Q Consensus 422 --------------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~- 478 (613)
.+..++|..+|++|.+.|+.||..+|+.++.++.. ....+..+.+.+. ..+..+..
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~ 883 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQS 883 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchh
Confidence 12347899999999999999999999999965533 3445554444321 11111110
Q ss_pred -----chh---hhHHHHHHHHHHHHcCCCCcHH
Q 007193 479 -----ENK---WTSLALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 479 -----~~~---~~~~a~~~~~~m~~~g~~p~~~ 503 (613)
..+ +...|+.+|++|...|+.|+..
T Consensus 884 ~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 NLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 011 3346999999999999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=532.65 Aligned_cols=500 Identities=20% Similarity=0.306 Sum_probs=438.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007193 66 RFFNVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (613)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (613)
.++..+.+.|++++|+++|+.|. .||..+|++++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 34455666777888888887663 4789999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999997 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
..+.+. ++.||..++++|+++|++.|++++|.++|+.|.. +|..+||+||.+|++.|++++|.++|++|.+.|+
T Consensus 248 ~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 248 CCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999875 7899999999999999999999999999999965 4678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 5899999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhhHH
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYE 459 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~ 459 (613)
|.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r--- 474 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR--- 474 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh---
Confidence 999999999999999999999999999999999999999999999999999999985 7999999999999999765
Q ss_pred HHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHhhHHH-hhCCChh-hhhc
Q 007193 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKR 537 (613)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 537 (613)
+|.+.+ |..++++ .++.||..+|..+++.|..+++.+....+.+ ..++.|+ ...|
T Consensus 475 -~G~~~e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 475 -EGLLDE-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred -cCCHHH-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 444443 3344443 4789999999999976666666555555444 3577776 5678
Q ss_pred ccccccccccccchhHHHHHHHHHHhCCCC--CcccccC----CceeeccccCcchHHHHHHHHHHHHHHHhh-Hhhh
Q 007193 538 SNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKE----IPVVVDARKLEIHTAKVYLLTILKGLRHRL-AAAI 608 (613)
Q Consensus 538 ~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~--p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 608 (613)
..+..++...|+| ++|..++++|.+.|+. |..++.. -+.++.....++...++|- .|..+..++ ++||
T Consensus 532 ~~L~~~y~~~G~~-~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy 606 (697)
T PLN03081 532 VVLLNLYNSSGRQ-AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGY 606 (697)
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCC
Confidence 7766777777876 5788999999999986 3333321 1444555566777888775 555554443 3454
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-59 Score=503.54 Aligned_cols=461 Identities=18% Similarity=0.272 Sum_probs=400.2
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
++..+|+.++ +.++++.|.+++..|.+.|+.| +..++..++..+.+.|++++|.++|++|+.||.++||+++.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 3444454444 5677777777777777777654 4555666778888889999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++|++|. ++|.++||++|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+
T Consensus 280 ~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999996 468999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.|+.|+..+|++||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++|+.+|++.|++++|.+++++| ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999976 689999999999999999999999999998876 478999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccC----C-------------------C
Q 007193 422 KDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS----G-------------------R 475 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~----~-------------------~ 475 (613)
.|+++.|..+++++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- + +
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h 584 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCC
Confidence 9999999999998875 5564 6789999999877 67777776554432110 0 1
Q ss_pred cccchhhhHHHHHHHHHHHHcCCCCcHHH
Q 007193 476 PQIENKWTSLALMVYREAIVAGTIPTVEV 504 (613)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 504 (613)
|.....+ .....+..+|.+.|..||...
T Consensus 585 ~~~~~i~-~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 585 PQSREIY-QKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred ccHHHHH-HHHHHHHHHHHHcCCCCCcch
Confidence 1111111 234567788999999998644
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-26 Score=263.83 Aligned_cols=515 Identities=16% Similarity=0.077 Sum_probs=351.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
..+.+.|++++|...++++...+ |.+......++..+...|++++|.++|+++. +.+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 33446666666666666666554 3444444555556666666777777766543 334555666666666777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|...|+++.
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777666543 2233445556667777777777777777776543 4566778888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++++...+ +.+.
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 653 334556677777888888888888888887753 24456677778888888888888888888887765 5566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
..+..++..|.+.|++++|..+++.+..... .+..+|..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 7778888888888888888888888876543 367788888888888888999988888887764 45677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
.+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999888887653 3457888888888888999999999998888764 456777888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccchhh------------hHHHHHHHHHHHH
Q 007193 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKW------------TSLALMVYREAIV 495 (613)
Q Consensus 430 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~m~~ 495 (613)
..++++.+.+ |+..++..+..++.+ ++++|....+......+. +...+ ...|...|+++++
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9998888754 444555556666554 566666554443322222 22111 2247888888877
Q ss_pred cCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCChhhh-hcccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007193 496 AGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (613)
Q Consensus 496 ~g~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~ 571 (613)
. .|+.......++ ....+. .+......+.....|+.. ....++.+....|+ .++|...+++|++. .|+.|
T Consensus 799 ~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~~~~~ 871 (899)
T TIGR02917 799 K--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI--APEAA 871 (899)
T ss_pred h--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh--CCCCh
Confidence 5 355443333332 223333 445555555555666533 22223333444454 36788999999875 45544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-26 Score=257.78 Aligned_cols=511 Identities=13% Similarity=0.058 Sum_probs=405.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (613)
....+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+.+. +.+...+..++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 3345568999999999999999876 6666677777778888899999999998754 3345566778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998754 6678899999999999999999999999998764 45677788899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
+...+ +.+..++..+...+.+.|+.++|...+.++.... +.+...+..+...|.+.|++++|..+++.+.+.. +.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 98764 4567888899999999999999999999987642 4556778889999999999999999999998765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
+..+|..+...+...|++++|...|+.+.+.... +...+..+...+.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 7889999999999999999999999999876543 66788889999999999999999999998875 566889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
.+...|++++|..+++.+.+.. +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998775 456778888999999999999999999999885 4666788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccchhhh-----------HHHHHHHHHHH
Q 007193 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREAI 494 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~m~ 494 (613)
|.+.++++.+.. ..+...+..+...|.+ ++++|....+......+. +...+. ..|+..+++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYLELKDPRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999988753 3456677777777664 677777766655433332 222222 23777777776
Q ss_pred HcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCCh-hhhhcccccccccccccchhHHHHHHHHHH
Q 007193 495 VAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (613)
Q Consensus 495 ~~g~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~ 562 (613)
+. .|+...+...++ +...+.-.+....+.+.....| ++..+..++..+...|+. ++|...+++++
T Consensus 831 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 898 (899)
T TIGR02917 831 KL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK-AEARKELDKLL 898 (899)
T ss_pred hh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Confidence 64 466554443343 2334444555555555555555 455555555555555763 56888888875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=188.58 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQV 178 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~ 178 (613)
+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666553 33445566666666666666666666666655321111 23455566666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRARE 255 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~ 255 (613)
++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666666665542 3345556666666666666666666666655421 00111 1122334444445555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (613)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++...+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------------------------------- 246 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE---------------------------------- 246 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh----------------------------------
Confidence 555554432 223334444445555555555555555554443221
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..+
T Consensus 247 -~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 247 -YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 11233444445555555555555555554443 233333444555555555555555555554442 3555555544
Q ss_pred HHHHhh---cCCHHHHHHHHHHHHHcCCCCCH
Q 007193 416 LVACER---KDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 416 l~a~~~---~g~~~~a~~~~~~m~~~g~~p~~ 444 (613)
+..+.. .|+.+++..++++|.+.++.|++
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 444332 33455555555555544444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=186.33 Aligned_cols=276 Identities=18% Similarity=0.157 Sum_probs=191.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHhcCC
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQ 249 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~ 249 (613)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ...+ ....+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 344455555555555555442 2233345555555555555555555555554321 0110 11345556666666666
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFE 325 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~ 325 (613)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777776666666543 344566677777777777777777777777665433221 234556677778888888888
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 405 (613)
.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888887764 34566778888999999999999999999987542222467889999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 577777888999999999999999999999874 699988888887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-17 Score=185.12 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=187.5
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHHH
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFFK 85 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~ 85 (613)
|.++.........+.+.|+.++|.+.++++.+.. |.+..+. ....+.+...|++++|++.|+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455555555666678899999999999998877 4444332 122334566788899998888
Q ss_pred hCCC---CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---
Q 007193 86 LVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--- 158 (613)
Q Consensus 86 ~~~~---~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 158 (613)
+... ++.. ............|+.++|...++.+.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 7642 2221 11111122234588888999998888764 55677778888888888898888888887754310
Q ss_pred ---------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 007193 159 ---------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 159 ---------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~m 188 (613)
. |+.... ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 000000 01123456678888898888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHhcCChHHHHHH
Q 007193 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRAREV 256 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~~~ 256 (613)
.+.. +.+...+..+...+.+.|++++|...|++....... .++...+ ......+.+.|++++|...
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8763 336777888888888889999999888887754211 1111111 1223456788888999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 98888875 556677788888888889999999998888876432 33344444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-18 Score=191.75 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=293.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC---HHHHHH-----------
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM----------- 97 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~----------- 97 (613)
.+...|++++|+..|++..+.. |.+...+..+..++...|++++|+..|++.. .|+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457899999999999998877 6777777888888888899999999998754 222 122222
Q ss_pred -HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 98 -li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998874 4567778888899999999999999999988764 345666777777764 45
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
+.++|...++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 788898888766432100 011234556677888999999999999988642 334566777888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~ 319 (613)
++++|...++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988764 4456666666667788899999999988765433222221 12344567888999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 35566777888999999999999999999998764 34678899999999999999999999998
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 400 MKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 400 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
..+. .| +..++..+..++...|++++|.++++++...
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7763 44 4556667778888999999999999998864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-17 Score=173.93 Aligned_cols=358 Identities=9% Similarity=-0.000 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+|+++.+++.-+-.|..-+++--- ..+..-...++..+.+.|++++|+.++..+. +.+...+..++.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 456666666555555444332100 0111111122223334455555555554432 223333334444444555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 5555555555443 3334455555555555555555555555555432 2234455555555555555555555555554
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
.... .+...+..+ ..+...|++++|...++.+.... ..++......+...+.+.|++++|...+++....+ +.+.
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 3321 112222222 22445555555555555544321 01122222333444555555555555555555443 3344
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 270 EVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
..+..+...+...|++++ |...|++.....+. +...+..+...+.+.|++++|...++...+.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555555555555555553 45555555544322 34455555555555555555555555555443 2334444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 346 MGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
...|.+.|++++|...|+++.+.+ |+. ..+..+..++...|+.++|.+.|++..+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554432 332 2222233445555555555555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-18 Score=166.14 Aligned_cols=395 Identities=14% Similarity=0.104 Sum_probs=271.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHcC
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~ 105 (613)
......+.+.|++.+|.+--..+-+++ |.+.....++...+.+..+++.....-.. ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334455668999999998877776666 32222222222333333333332221111 1223456777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~ 184 (613)
|+++.|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+...|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888888763 334667888888888888888888888877765 45544433 344444557888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 185 YGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|.+..+. .|. .+.|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++.|...+.+...
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 8777765 333 456777777777888888888888877643 444 44677777778888888888887777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.. +....++..|...|...|..+.|+..+++..+..+. -...|+.+..++-..|++.+|...+....... +......
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 53 444567777777788888888888888887765332 24567888888888888888888888777664 3445677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE 420 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 420 (613)
+.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++..+ +.|+- ..|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 77888888888888888888777653 344 45677777888888888888888887776 56764 56777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 007193 421 RKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 421 ~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
..|+++.|.+.+.+.+. +.|.
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcH
Confidence 88888888888877776 4454
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-17 Score=172.86 Aligned_cols=325 Identities=11% Similarity=0.011 Sum_probs=266.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
-.+.+.|++++|..+++...... |.+......++......|++++|...|+++. +.+...+..+...+.+.|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 34558999999999999999877 6666666666677777899999999999864 456778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 9999999999764 5567788999999999999999999999887653 2233344333 34788999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCC
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNI 265 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~ 265 (613)
.....++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...|++..+..
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 76433445555666788899999999999999998642 4457778889999999999986 899999998875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
+.+..++..+...+.+.|++++|...+++.....+. +...+..+..++.+.|++++|...++.+...+ +.+...+..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 567889999999999999999999999999987544 56677788899999999999999999998774 2233344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 007193 346 MGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
..++...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 67889999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-18 Score=164.89 Aligned_cols=388 Identities=14% Similarity=0.143 Sum_probs=318.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
+..+++...+--....+.. |.....+..+..++...|++++|+.+++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555544444444444 6777788889999999999999999999765 4567789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 114 VLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
.|....+. .|+.... +.+-..+...|++++|..-|.+.++.. +--...|+.|...+-.+|+...|+.-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl- 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL- 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC-
Confidence 99988865 5665443 344555566899999999998887763 223567999999999999999999999999875
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 193 VKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
.|+ ...|-.|-..|...+.+++|...+.+.... .|+ .+++..+...|-..|.++.|+..+++..+.. +.-+.
T Consensus 248 -dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 248 -DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred -CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 555 557888999999999999999999888753 454 6677888888999999999999999998875 44478
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.|+.|..++-..|+..+|.+.+......... -....+.|...|...|.+++|..+|.....-. +--....+.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHH
Confidence 9999999999999999999999999886433 45678889999999999999999999887763 333567889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 428 (613)
+.|++++|...+++..+ ++|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...+...|++.+|
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999999887 4677 57899999999999999999999999887 4675 46788999999999999999
Q ss_pred HHHHHHHHHcCCCCCH
Q 007193 429 LMLLSQAKEDGVIPNL 444 (613)
Q Consensus 429 ~~~~~~m~~~g~~p~~ 444 (613)
++-++..++ ++||.
T Consensus 476 I~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHc--cCCCC
Confidence 999999988 55663
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-16 Score=171.38 Aligned_cols=393 Identities=12% Similarity=0.039 Sum_probs=275.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|+..+.+.. +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 45558899999999999998765 43 4566677788888899999999998754 456778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---------------------------CCCCCH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPNV 162 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~~~~ 162 (613)
+|+.-|......+ ..+......++..+........+...++.-... ...+..
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665443 112111111111111110011111111100000 000000
Q ss_pred -HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HH
Q 007193 163 -HTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HI 235 (613)
Q Consensus 163 -~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~ 235 (613)
..+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|...|++.... .|+ ..
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~ 366 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQ 366 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHH
Confidence 000001000 012367889999999988764 233 3456777778888899999999999998763 344 55
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
.|..+...+...|++++|...|++..+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 77788888889999999999999888775 556788899999999999999999999998887543 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCC
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQ 389 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~ 389 (613)
+.|++++|...++...+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++.....+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999988763 556788888999999999999999999988765321111 112222333445689
Q ss_pred hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 390 LPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+++|.+++++.... .| +...+..+...+...|++++|...|++..+.
T Consensus 524 ~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999988774 35 4456888889999999999999999988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-16 Score=171.76 Aligned_cols=397 Identities=10% Similarity=-0.002 Sum_probs=300.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 109 (613)
......|+.++|++++.+..... |.....+..+...+...|++++|..+|++. .+.+...+..+...+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34458999999999999998744 555656777888889999999999999984 3556777888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|+..++...+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|+..++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998874 55666 8889999999999999999999999874 4466667778888889999999999998776
Q ss_pred hCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHHHHhcCCh
Q 007193 190 SKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKACANAGQV 250 (613)
Q Consensus 190 ~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~~~~~~~~~~-~~----~~ll~~~~~~g~~ 250 (613)
. .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+...|++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 4 2331 11222232222 12234 77888888887531 1223221 11 1113345677999
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
++|...|+.+.+.+-+ |+ ..-..+...|...|++++|+..|+++....... .......+..++...|++++|...
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999887622 22 223335778999999999999999987654321 134566677788999999999999
Q ss_pred HHHHHHCCC-----------CcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007193 327 LQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (613)
Q Consensus 327 ~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (613)
++.+..... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987631 122 2345667788899999999999999998764 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007193 393 TMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (613)
|++.+++.... .|+ ...+......+...|++++|..+++++++. .|+.
T Consensus 412 A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 412 AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 99999998884 575 566667777889999999999999999973 4543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-15 Score=141.13 Aligned_cols=399 Identities=16% Similarity=0.193 Sum_probs=291.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----------------------------hhHHHHHHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----------------------------SQKAIKEAFR 82 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~~~~A~~ 82 (613)
.-.+|.+|.+..+.-+++.|..+|+ +-...+...+.+... +.|+ -|.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~--vAd- 197 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA--VAD- 197 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc--HHH-
Confidence 3456789999999999999999986 333333333333211 1122 222
Q ss_pred HHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 007193 83 FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 83 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (613)
++-+..+.+..++.+||.++++-...+.|.+++++......+.+..+||.+|.+-+-. ...++..+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 5555566788899999999999999999999999999887899999999999875443 337899999999999999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhC--CCCC----C
Q 007193 163 HTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE--VHPV----D 231 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~--~~~~----~ 231 (613)
.|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... +..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 56788899999999999999999999999887644 44444444321 1112 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 304 (613)
.|..-|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-...++.|.-.-..|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 345667788899999999999999887765432 2222 233667888889999999999999999988888999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-C--------H-----HHHHHHHH-------
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N--------W-----QKALELYE------- 363 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~-----~~A~~~~~------- 363 (613)
.+...++++..-.+.++-..+++..++..|..-+.....-++..+++.. . + +-|..+++
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999888775555555555555555443 1 0 01111221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (613)
++.+. .......+...-.+.+.|+.++|.++|....++| ..|......-++++.....+...|..+++.|...+
T Consensus 514 R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22222 3445566777777888999999999988886544 22344444466677777888888888888886654
Q ss_pred C
Q 007193 440 V 440 (613)
Q Consensus 440 ~ 440 (613)
.
T Consensus 592 ~ 592 (625)
T KOG4422|consen 592 L 592 (625)
T ss_pred c
Confidence 3
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-15 Score=160.32 Aligned_cols=221 Identities=13% Similarity=-0.006 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 211 GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
+++++|.+.|+...... ...| +...+..+...+...|++++|...|++..+.. +.....|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777766432 1122 34456666666777777777777777776654 334556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
..|++..+.... +...+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..+..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777665432 45666777777777777777777777777664 4455666667777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-I-------TYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~-------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+.+...|+.+...+...|++++|++.|++..+. .|+. . .+...+..+...|++++|.+++++..+.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 234566777777777777777777777776653 2221 1 1111112233357777777777776653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-14 Score=155.51 Aligned_cols=442 Identities=13% Similarity=0.105 Sum_probs=304.9
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHH-HHH-
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF-NML- 98 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l- 98 (613)
|..+.......-...++|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+.++++...|+...+ ..+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 3333333333334449999999999999999987 5542 223 555666677999999999999876644433 333
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 99 -MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 99 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
...+...|++++|+++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 457888899999999999999875 555777888899999999999999999999876 5666666555444544666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----Hh
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----AN 246 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------~~ll~~~-----~~ 246 (613)
..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- ..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 667999999999873 34566778888999999999888887765332 112211111 1111100 01
Q ss_pred cCC---hHHHHHHHHHHHhcC--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 247 AGQ---VDRAREVYKMIHKYN--IKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 247 ~g~---~~~A~~~~~~~~~~~--~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..+ .+.|..-++.+...- .++....| --.+-++...|++.++++.|+.+...+......+-..+.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 122 344555556555421 12221222 234566788899999999999999887543456788889999999
Q ss_pred CCHHHHHHHHHHHHHCC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HHHH
Q 007193 318 GKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-STMN 378 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~~~ 378 (613)
+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ..+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999986653 23344456788889999999999999999987621 12232 2344
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS-- 455 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~-- 455 (613)
.++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.|+.. +.........
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhh
Confidence 56677888999999999999987752 44778888888999999999999999976665 345532 2222222222
Q ss_pred hhHHHHHHhhhhhhcccCCCc
Q 007193 456 RRYEKARTLNEHVLSFNSGRP 476 (613)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~ 476 (613)
+.+.+|..+.+......|..+
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCch
Confidence 257777777766655555433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-14 Score=158.97 Aligned_cols=394 Identities=12% Similarity=0.076 Sum_probs=284.3
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (613)
.+.+..-.|+.++|++++.+.. +.+...+..+...+...|++++|..+++...+.. +.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455666788999999998754 3455568999999999999999999999988764 55677788899999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|.+.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998773 44566 8889999999999999999999999873 334556667788888899999999998876
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 007193 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (613)
Q Consensus 224 ~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g 283 (613)
.. .|+. .....++..+. ..+++ ++|.+.++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 53 2331 11222222222 12234 6788888888754 112221 111 11134556779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHhcCCHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (613)
++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 433 22235678999999999999999987654211 1345666777889999999999
Q ss_pred HHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007193 360 ELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 360 ~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
.+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 99999886421 123 234556778889999999999999999875 244667788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH--hhHHHHHHhhhhhhcccC
Q 007193 426 EVGLMLLSQAKEDGVIPNL-VMFKCIIGMCS--RRYEKARTLNEHVLSFNS 473 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~--~~~~~a~~~~~~~~~~~~ 473 (613)
++|++.+++..+ +.|+. ..+......+. +++++|..+.+......+
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999987 34653 22222222222 267777666655544333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-12 Score=141.66 Aligned_cols=417 Identities=10% Similarity=0.032 Sum_probs=195.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
.+.|.+.+++++|+.++..+.+.+ +.+..-...|-.+|.. .++ +++..++.. .+..+...+..+...|.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC
Confidence 566666777777777777777665 3344445555556665 355 556555443 123466777777778888888
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHH------------------------------HHHHHccCCHHHHHHHHH-----
Q 007193 178 VAKAFGAYGIMRSKNV-KPDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA----- 221 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~-~p~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~----- 221 (613)
.++|..+++++...-. .|...+|.-+ +..+.+.++++.+.++..
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 8888877777654311 1222222111 222233333333333211
Q ss_pred ------------------------HHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 007193 222 ------------------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIA 275 (613)
Q Consensus 222 ------------------------~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 275 (613)
.|-+. .+-+......+.-...+.|+.++|.++|+..... +...+....+-+
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 01000 0112222222223345667777777777665442 112223333344
Q ss_pred HHHHHhcC-------------------------CHHHHHHHHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 276 INCCSQTG-------------------------DWEFACSVYDDMTKK-GV-IP--DEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 276 i~~~~~~g-------------------------~~~~a~~~~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
+..|...+ +..++.......... +. .+ +...|..+..++.. ++.++|...
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 44444332 222222222222221 11 12 34444555444444 566666665
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007193 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 406 (613)
+....... |+......+...+...|++++|...|+++... .|+...+..+...+.+.|++++|...+++..+.. +
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P 573 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-L 573 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 55554442 33333223333344666666666666665432 2333445555555666666666666666665532 1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccc-----
Q 007193 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE----- 479 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~----- 479 (613)
++...+..+.......|++++|...+++.++ ..|+...+..+-.++.+ ++++|....+.....++..+..-
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2222232333334445666666666666665 33444445444444433 44444444333333332221100
Q ss_pred ----hhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhcc--CCCCchhHHhhHHHhhCCChhh
Q 007193 480 ----NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSADA 534 (613)
Q Consensus 480 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 534 (613)
.+....|+..|++.++ ..|+...+...++.+ ..+.-.+....+.+...+.|+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 0111235555555544 356665444444332 2333344444555555566654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-13 Score=140.43 Aligned_cols=466 Identities=12% Similarity=0.073 Sum_probs=287.5
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHH
Q 007193 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV---YHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF 95 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 95 (613)
+++++..-.+..|.+.-.|++..++.+.+.+..... ...+ -+..+++.+-..|++++|..+|-+.. .+|.+++
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 456667777777888888999999998888877652 2222 24456777788889999998887644 2333333
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 96 --NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 96 --~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
--+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..+.- +.|...|-.+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 345677888888888888888887763 445566666666666554 3455555555544332 33444555444
Q ss_pred HHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC--------------
Q 007193 170 DGCAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PV-------------- 230 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-------------- 230 (613)
..+-...-+ .++.+|... ...+.++.....|.+...+...|+++.|...|........ ..
T Consensus 422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 444333222 224443332 2233334455555555555555555555555554433200 01
Q ss_pred -------------------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007193 231 -------------------------DPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (613)
Q Consensus 231 -------------------------~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (613)
.|. +..|--++.+....+...+|...+......+ ..++..++.+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 121 1112222222222345566666666666654 5566777777778888877
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 285 WEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 285 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
+..|.+-|...... ...+|..+.-+|.+.|.+ .+..++|+++|.++.+.. +-|...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 77777766665543 223566666666665543 235678889999888875 6678888888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 007193 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLM 430 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (613)
.|++.+|..+|.++.+... ....+|-.+.++|...|++..|+++|+...+ .+-.-+......|..++...|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999987542 3456788889999999999999999988544 4434467778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCc---ccchhhhHHHHHHHHHHHHcCCCCcH
Q 007193 431 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP---QIENKWTSLALMVYREAIVAGTIPTV 502 (613)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (613)
..-.....-..-..+.+|..+-+ ...|..+.+. ..+.. .....-...|.++|.+|...+-.|=.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~----kkla~s~lr~----~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVL----KKLAESILRL----EKRTLEEVLEAVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHH----HHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 88877764444444556655433 1112211110 01000 01112223588999999887755433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-12 Score=136.61 Aligned_cols=432 Identities=14% Similarity=0.063 Sum_probs=284.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
.......+.+.|++++|+.++.++.+.+ +.+......+..++.. .++ ++|..+++.....++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 3333566778999999999999999998 4555555556666666 366 88888877655678899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-CCHHHH------------------------------HHHHHHHHHcCChhHHHHHHH----
Q 007193 107 DSEGAFQVLRLVQEAGLK-ADCKLY------------------------------TTLITTCAKSGKVDAMFEVFH---- 151 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~-~~~~~~------------------------------~~li~~~~~~g~~~~a~~~~~---- 151 (613)
+.++|.++++.+...-.. |+..+| -.++..+.+.++++.+.++.+
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999988643211 222222 122455556666665554422
Q ss_pred -------------------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007193 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (613)
Q Consensus 152 -------------------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li 204 (613)
.|.+.. +-+....-.+--...+.|+.++|.++|+..... + -.++...-.-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112223333333455678888999998888762 1 223344444667
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHhhCCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 007193 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 205 ~~~~~~g~---~~~a~~~----------------------~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
..|.+.+. ..++..+ ...........++ +...+..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77766655 2222222 1111111011133 55667777776666 7888899988
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
.+..... |+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7776654 44333334445556889999999999987654 3344456666778888999999999999988765 33
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (613)
+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.... .| +...+..+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3344444444455669999999999998875 467888888999999999999999999998875 45 456677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCC
Q 007193 417 VACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (613)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (613)
.++...|+.++|+..+++..+. .|+ ...+..+-.++.. ++++|....+.....++..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7889999999999999998874 343 3334444444333 5667766655554444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-12 Score=139.35 Aligned_cols=415 Identities=10% Similarity=0.059 Sum_probs=288.0
Q ss_pred HHhhhHHHHHHHHHHHhCCC--CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 007193 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (613)
...+.|+++.|+..|.+... |+. .....++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 35577889999999998763 332 123388888889999999999999988221 33344444456688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
.++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445677788889999999999999999999876 666666644544454466666799999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHH-----HHhcCCH---HHHHHHH
Q 007193 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINC-----CSQTGDW---EFACSVY 292 (613)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~-----~~~~g~~---~~a~~~~ 292 (613)
. +.+...+..+..+..+.|-...|.++...-+..- .+....+ ..++.. -....++ +.|+.-+
T Consensus 199 ~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 2 4456777888899999999999988776544221 1111111 111110 0112333 3444555
Q ss_pred HHHHHC-CCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 293 DDMTKK-GVIPDE-VFL-S---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 293 ~~m~~~-g~~p~~-~~~-~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+.+... +..|.. ..| . =-+-++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 554441 222322 222 2 2344778889999999999999998876667788999999999999999999999986
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHhhcCCHHH
Q 007193 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVEV 427 (613)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~ 427 (613)
... ..++......|..+|...+++++|..+++.+.+.- ..||-.. +..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 542 12345556789999999999999999999998731 1123333 4455677899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcc--cchhhhHHHHHHHHHH
Q 007193 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (613)
|.+.++.+... -+-|......+-+.+.. ...+|.++.+.....++.... ...+++.+++.=|+++
T Consensus 435 Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999864 23355556666665554 688888888776666554322 2234444444334433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-12 Score=133.93 Aligned_cols=426 Identities=12% Similarity=0.089 Sum_probs=302.9
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH----HHHHHHHHHHhCC---CCCH
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----AIKEAFRFFKLVP---NPTL 92 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~---~~~~ 92 (613)
+..+..-+.+-.-...|++|++++|...|+.+.+.. |++..+..+++..+...+ ..+.|..+..+.. +.|+
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 333445666666777889999999999999999887 777777777777666543 5577777777654 3466
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCH---
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---GIEPNV--- 162 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~--- 162 (613)
..|-.+...+-.. +...++..+... ...+-.+.+...|.+...+...|+++.|...|+..... ...+|.
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 6777666665544 444446666544 34555677889999999999999999999999887654 112333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 ---HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
.+--.+...+-..++++.|.+.|...... .|.-+ .|.-+.......+...+|...+...... ...+...++
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np~ars 568 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNPNARS 568 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCcHHHH
Confidence 22233455666778999999999999876 45533 3333333333447788899999888763 244455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQT------------GDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~m~~~g~~p~~~ 305 (613)
.+...+.+...+..|.+-|..+.+.- ..+|+.+.-+|.+.|.+. +..++|+++|.+.++..+. |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 67778888889999998777665542 235666666676655432 4578899999999988765 778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITAL 384 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~ 384 (613)
.-+-+.-.++..|++.+|..+|.++.+.. .....+|-.+.++|..+|++..|.++|+...+. ....+......|..++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 88888888999999999999999998875 235668889999999999999999999987653 3345678889999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------HhhcCCHHHHHHHHHHHHHcCCC-CCHH
Q 007193 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA------------------CERKDDVEVGLMLLSQAKEDGVI-PNLV 445 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a------------------~~~~g~~~~a~~~~~~m~~~g~~-p~~~ 445 (613)
.+.|.+.+|.+.+......-..-..+.|+..+-. -...+..+.|.++|.++.+.+-. -+..
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~ 806 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKT 806 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 9999999999998887764222233445544421 12245677899999999876544 3444
Q ss_pred HHHHHHHHHH
Q 007193 446 MFKCIIGMCS 455 (613)
Q Consensus 446 ~~~~li~~~~ 455 (613)
....-+..|.
T Consensus 807 ~~~~~a~~c~ 816 (1018)
T KOG2002|consen 807 VIAQEAQLCK 816 (1018)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-12 Score=116.75 Aligned_cols=314 Identities=21% Similarity=0.268 Sum_probs=234.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHH-HHHHHHHHHCC----------
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAM-FEVFHEMVNAG---------- 157 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a-~~~~~~m~~~g---------- 157 (613)
.+++=|.|++. ..+|.+..+.-+++.|...|++.+...-..|+..-+- ..++.-| ++.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666654 4567888999999999999988887776666654332 2222111 12222222111
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
.+.+..|+.+||.+.|+-...+.|.+++++-.+...+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 255778999999999999999999999999988877899999999997654332 26788888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CC
Q 007193 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g 299 (613)
.+.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 6799999999999999999987654 5677889999999999999999999999888754 4444444432 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
++| |...|.+.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333 55678888899999999999999988775431 2233 224567777888888899999999999877
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (613)
-+-|+..+...++++..-.|+++-.-++|.++...|..-+...
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6678888888888888888888888888888887664433333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-13 Score=125.97 Aligned_cols=409 Identities=14% Similarity=0.200 Sum_probs=276.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHcCCCh
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPT----LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~~~~ 108 (613)
-+....+|+..++-+.+...+|..-.+...++..+.+.+.+.+|+++|.. +|.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 46778899999999998888887777777777778888899999999864 34322 33455555568899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (613)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+..... |+....|.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988765 677766555666667789999999999999764322 3333333222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV-------------FN--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
+-+.+ +.++++-.--++..--+.||-.. +. .-..-+.+.|+++.|.+++.-..++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12222222222222222222100 00 112357888999988888876654321
Q ss_pred CCCCCHHHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 229 PVDPDHITIGALM------------------------------------KACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 229 ~~~~~~~~~~~ll------------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
... ...-+.|. +.....|++++|.+.+.+....+.......|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 110 01111110 0011347788888888888776543333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
| +.-.+-..|+.++|++.|-++...- .-+...+..+...|....+..+|.+++.+.... ++.|+.+..-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3334567788999999887764421 125667777788888888899999888776554 577889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHH
Q 007193 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 431 (613)
|+-.+|.+.+-.--+. ++-+..+..-|..-|.....+++|+..|++..- +.|+..-|..++..| .+.|++++|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554332 345677777788888888889999999998765 689999999888776 468999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 432 ~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
++...+. +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988754 77788888888888764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-11 Score=124.42 Aligned_cols=366 Identities=13% Similarity=0.141 Sum_probs=274.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~ 107 (613)
-.|.+.-+|++++|..++.++.+.+ |.+...+..++.++.+.|+.++++..+-. ..+.|...|-.+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 4455666799999999999999998 77888888899999999999999987754 346678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~ 183 (613)
+++|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.+..-+.|..-.. ..+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999886 5665566667788999999999999999998874222222222 33455666777799999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCHHHH
Q 007193 184 AYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHITI 237 (613)
Q Consensus 184 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------------~~~~~~~~~~~ 237 (613)
.++.....+ -..+...++.++..+.+...++.|......+... +.+..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 998887632 2334567888888899999999988877776541 01122233331
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
-+.-++.+....+....+.......++ ..+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|-
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 222334455555555666666666663 33466788999999999999999999999998766557788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcC
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCDG 387 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~ 387 (613)
..|..++|.+.|....... +.+...--+|-..+-+.|+.++|.+.+..+.. .+..|+...--.....+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998875 55666777888889999999999999998652 22334444444455667778
Q ss_pred CChhHHHHHHHHHH
Q 007193 388 DQLPKTMEVLSDMK 401 (613)
Q Consensus 388 g~~~~A~~l~~~m~ 401 (613)
|+.++=+.....|.
T Consensus 540 gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 540 GKREEFINTASTLV 553 (895)
T ss_pred hhHHHHHHHHHHHH
Confidence 88777555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-10 Score=106.47 Aligned_cols=417 Identities=13% Similarity=0.098 Sum_probs=302.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
.++++..|+.+|++...-+ ..+..+....+.+-.+++.+..|..++++.. +.-...|.-.+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4778889999999998766 4455566666667778888999999999754 2223456666666667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (613)
+|++-.+. .|+...|++.|..-.+-..++.|..+|+...-- .|++.+|---...-.++|....|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988765 899999999999999999999999999998754 699999999888888999999999999988754 2
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHH
Q 007193 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (613)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (613)
- .-+...|++...-=.++..++.|.-+|.-.... ++.+ ...|......--+-|+.....+. ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 1 112233444444444567788888888877653 2333 34454444444445654433332 33444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 007193 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li----~-~~---~~~g~~~~a~~~~~~~~ 331 (613)
+.+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|...| + +| ....+++.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 556678888888888889999999999998865 34421 1222221 1 11 24678899999999988
Q ss_pred HCCCCcCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+. +|-...|+.-+--+|+ ++.++..|.+++.... |.-|-..++-..|..-.+.+.++....++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 4556667666555554 6788999999988765 456888899999999999999999999999998864 33
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh--hHHHHHHhhhhh
Q 007193 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (613)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (613)
|..+|.-....-...|+.+.|+.+|+-.+.. .++.....|.+.|+.=.. .+++|..+.+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 7788988888888899999999999988864 344456667777764222 466666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-10 Score=109.90 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=126.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.+|-...+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+=--.|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 33444445555555555555555444444333333444445555566666655554321111234445444422211111
Q ss_pred hH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 250 ~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
+. .|..+++ +. +--+.|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++
T Consensus 315 Ls~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 11 111245555555555555555555555555555433 33445555555555555555555555
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
..++-+ +-|-..|-.|..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555554 4455555555555555555555555555555432 2345555555555555555555555555555433 224
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
...+..+...+.+.++.++|.+.+++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=138.37 Aligned_cols=221 Identities=18% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (613)
..+...++.+.|.+.++++...+ +-+...+..++.. ...+++++|.++++...+. .++...+...+..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHH
Confidence 33334444444444444444332 1123333333333 3444444444444443332 123333444444444444444
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
++.++++.+... ...+++...|..+...+.+.|+.++|.+.+++..+.. +.+....+.++..+...|+.+++.+++..
T Consensus 128 ~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 128 EAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 444444443321 1122333444444444444444444444444444433 23344444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 295 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
..+.. ..|...+..+..+|...|+.++|+..++...+.. +.|+.+...+.+++...|+.++|.++..
T Consensus 206 ~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 206 LLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 33321 1122233444444444444444444444444432 3344444444444444444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-11 Score=122.88 Aligned_cols=292 Identities=10% Similarity=-0.042 Sum_probs=177.8
Q ss_pred hhhHHHHHHHHHHHhCCC--CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
...|+++.|.+.+.+... |+. ..+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345677777777766542 332 23333445566778888888888777654312222333445666777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHhh
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~ 225 (613)
.++.+.+.. +.+..++..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877764 4466677777788888888888888888887775432222111111111 222222222333333333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007193 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (613)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 302 (613)
... ..+.+...+..+...+...|+.+.|.+++++..+.. +++... ...........++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 112366677777778888888888888888777754 222211 111222223456777777777777665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 45667777888888888888888854443345777777788888888888888888887753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-09 Score=106.27 Aligned_cols=455 Identities=12% Similarity=0.075 Sum_probs=319.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--------CCCHHHHHHHHH
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPTLSTFNMLMS 100 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~ 100 (613)
+..|-+|.+..-|+.|..++....+.= |.+..+......+-..+|+.+...++.++.. .-+...|-.=..
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 344555555555555555555555432 3333333333333344444444444443321 234445555555
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
.|-..|..-.+..+.......|+... ..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcH
Confidence 66666666666666666666665432 4689999999999999999999999988753 55677888888777778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
++...+|++.... ++.....|-...+-+-..|++..|..++.+..+.. +.+...|-+-+..-....+++.|..+|.
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999876 34455667666777888899999999999887642 3356788888888999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
+.... .|+..+|.--+..---.+..++|++++++..+. -|+ ...|-.+.+.+.+.++++.|...|..-.+. ++-
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 88764 567788888888888889999999999998876 234 457788888999999999999998876655 355
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (613)
.+..|-.|...-.+.|.+-.|..+|++..-.+ +.+...|-..|..-.+.|..+.|..+..+..+. ++-+...|.--|.
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 67788888888889999999999999987665 567889999999999999999999999887765 4556677888887
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H-hhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHH
Q 007193 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 495 (613)
..-+.++-...... +.+..-.|.+ .-++-.++ + +++++|..+.......++ .++..|.- +|.--.+
T Consensus 796 le~~~~rkTks~DA---Lkkce~dphV--llaia~lfw~e~k~~kar~Wf~Ravk~d~---d~GD~wa~----fykfel~ 863 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDA---LKKCEHDPHV--LLAIAKLFWSEKKIEKAREWFERAVKKDP---DNGDAWAW----FYKFELR 863 (913)
T ss_pred hccCcccchHHHHH---HHhccCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHccCC---ccchHHHH----HHHHHHH
Confidence 77776664333333 3343333443 33333332 3 378889888776554433 34455532 2333345
Q ss_pred cCCCCcHHHHHHHH
Q 007193 496 AGTIPTVEVVSKVL 509 (613)
Q Consensus 496 ~g~~p~~~~~~~~l 509 (613)
.|-.-|..-+..-.
T Consensus 864 hG~eed~kev~~~c 877 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKC 877 (913)
T ss_pred hCCHHHHHHHHHHH
Confidence 67666665444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-10 Score=117.49 Aligned_cols=360 Identities=14% Similarity=0.086 Sum_probs=267.4
Q ss_pred hhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
...|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--. .+-|...|..+.....+.|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34589999999999875 557789999999999999999998876544433 35677899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHh
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF----NALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
.|.+.++.. +++....---+..|-+.|+...|..-|.++.....+.|-.-+ ...++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 556555556677899999999999999999877322222222 234556777788899999988887
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------------------------CCHHHHHHHHH
Q 007193 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---------------------------GTPEVYTIAIN 277 (613)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~~li~ 277 (613)
.. .+-..+...++.++..+.+...++.|......+..+... ++..++ .++-
T Consensus 308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 63 233445567788888899999999998887766652222 222221 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
++......+....+.....+..+ .-+...|.-+..++.+.|++.+|+.+|..+.....--+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 34444444444455555555553 3355678889999999999999999999999886566788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
++|.+.|+...... +-+...-.+|-..+-+.|++++|++.+..+.. .+..|+..........+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998753 23455666778888999999999999998642 2345566666666677888888877
Q ss_pred HHHHHHHHH
Q 007193 428 GLMLLSQAK 436 (613)
Q Consensus 428 a~~~~~~m~ 436 (613)
=..+-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555544444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-11 Score=121.21 Aligned_cols=285 Identities=13% Similarity=0.045 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (613)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68899888877766554211 2333444455557889999999999988765 45543332 3356788889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~ 256 (613)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988774 4456677788889999999999999998888652 222332 2344555555555566777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (613)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7776554 2567788889999999999999999999988875 344421 12333445588999999999888774 5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
-|+.....+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778889999999999999999999999875 58988888999999999999999999988654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=135.09 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 108 (613)
.+.+.+.|++++|++++.+.......|.+..+...+...+...+++++|+..++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3445566777777777754333221244555555555556666666666666666542 223344444444 456666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
++|.++++...+. .+++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666555443 2344455556666666666666666666654322 234555566666666666666666666666
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007193 188 MRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (613)
Q Consensus 188 m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (613)
..+. .| |....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.+ +
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 6654 33 3455556666666666666666666555442 12333455556666666666666666666665543 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 267 GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
.|+.....+...+.+.|+.++|.++..+.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 45566666666666666666666665544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-10 Score=105.29 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=230.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCC
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGA 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 212 (613)
.++-...+.+++.+-.......|++-+...-+....+.-...+++.|+.+|+++.+.... -|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 445555677788888888888887766666666666667788999999999999987311 1567887776 344332
Q ss_pred HH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 213 VD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 213 ~~---~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
.. -|..++. + ....|. |+..+.+-|+-.++.++|...|++..+.+ +.....|+.|..-|....+...|.
T Consensus 313 skLs~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHHHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 22 2222222 1 234454 77778889999999999999999999987 666789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
+-++...+-.+. |...|-.+.++|.-.+...=|+-.|++...-. |.|...|.+|.++|.+.++.++|.+.|.+....|
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999999988665 89999999999999999999999999998875 6789999999999999999999999999998866
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
..+...+..|...|-+.++..+|...|.+-.+ .|..-+... ..-|..-+.+.+++++|..+.....+. .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 34668899999999999999999999988654 343322222 222445567788888887766655542 444
Q ss_pred HHHHHHHH
Q 007193 444 LVMFKCII 451 (613)
Q Consensus 444 ~~~~~~li 451 (613)
..-.++|+
T Consensus 540 ~eeak~Ll 547 (559)
T KOG1155|consen 540 CEEAKALL 547 (559)
T ss_pred HHHHHHHH
Confidence 43334443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-11 Score=120.64 Aligned_cols=283 Identities=8% Similarity=0.005 Sum_probs=218.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 216 (613)
.|+++.|.+.+....+.. ++...+- .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 2233333 3344457899999999999999875 56654333 335678899999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 007193 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~ 289 (613)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998642 445678888899999999999999999999988754332 23444455555556667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
++++.+.+.- +.+......+...+...|+.++|..++....+. +++... .++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765442 347778888999999999999999999998885 455532 23344446699999999999888654
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+-|...+.++...+.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+++++-..
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567788999999999999999999999988 479999999999999999999999999988754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=118.03 Aligned_cols=287 Identities=11% Similarity=-0.007 Sum_probs=144.8
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (613)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777776665542 33 333444456666677777777777776554 2333 23333456666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHH---HhcCChHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRARE 255 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~A~~ 255 (613)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777663 3345566666677777777777777777766531 1 12111211 01111 11222222222
Q ss_pred HHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007193 256 VYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEA 330 (613)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~ 330 (613)
.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+....+....+. ++.. ....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 333333221 11355666666666666677777766666666653221111000 1111 12234445555555444
Q ss_pred HHCCCCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4432 2233 344455555555555555555555322222245555455555555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-08 Score=98.78 Aligned_cols=415 Identities=13% Similarity=0.092 Sum_probs=329.5
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 007193 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (613)
.++.++..|..-+.....+.|+-++++..+-- |.+..+...+ .+..-++.|.+++.+ ..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 34567788888888888888999999888753 5544444333 334446666666654 55778899988888
Q ss_pred HHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 007193 101 VCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (613)
.--.+|+.+....++.+- ...|+.-+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 888899999888887654 457888899999988899999999999999999888877653 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.+.++-|..+|...++- .+-+...|......--..|..+....+|.+.... ++.....|......+-..|++..|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3456677877777777789999999999998864 3445566766777788899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
.++....+.+ +.+...|-+-+..-..+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 557889999999999999999999999998775 456666666666666678999999999988877
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
++.-...|..+...+-+.++++.|.+.|..=.+. ++..+..|-.|...--+.|++-+|..+|++..-.+ +-+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3445667888888999999999999888765433 33456788888888888999999999999987763 447788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|..-.+.|+.+.|..+..+.++. +..+...|..-|.+..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 999999999999999999888864 4556666776666643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.2e-10 Score=100.19 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (613)
+.+.++|.++|-+|.+.. +.+..+--+|-+.|.+.|.+|.|+.++..+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346677777777776532 334445556667777777777777777776653 332 2233444556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~ 254 (613)
+.|..+|..+.+.| .--......|+..|-...++++|.++-+++...+ -.+. ...|.-+...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66666666666543 2223445556666666666666666665554321 1111 112333333444445555566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6655555543 22222333344455555566666666655555543323344455555555555555555555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-10 Score=107.98 Aligned_cols=392 Identities=15% Similarity=0.173 Sum_probs=256.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCC----CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 007193 66 RFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITT 136 (613)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 136 (613)
.+.+-|..+....+|+..|+-+.. ||.- .--.+...+.+...+.+|+..++.....-...+ ....+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344455556677888888876542 2222 122344567888899999999988776421112 2234444455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV------------KPDRVVFNALI 204 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------~p~~~~~~~li 204 (613)
+.+.|+++.|+.-|+...+. .||..+--.|+-++..-|+-++..+.|.+|..... .|+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 67889999999999998776 68877766666677778999999999999976432 23444443333
Q ss_pred H-----HHHccCC--HHHHHHHHHHHhhCCCCCCCCHHH-------------H--------HHHHHHHHhcCChHHHHHH
Q 007193 205 T-----ACGQSGA--VDRAFDVLAEMNAEVHPVDPDHIT-------------I--------GALMKACANAGQVDRAREV 256 (613)
Q Consensus 205 ~-----~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~-------------~--------~~ll~~~~~~g~~~~A~~~ 256 (613)
. -.-+.+. -+++.-.-..+.. .-+.||-.. + -.-...|.+.|+++.|.++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 2 1212111 1222211111111 112222110 0 0112347899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHH------------------------------------HHHhcCCHHHHHHHHHHHHHCCC
Q 007193 257 YKMIHKYNIKGTPEVYTIAIN------------------------------------CCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~------------------------------------~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
+.-+.+.+-..-...-+.|-. .-..+|++++|.+.+++....+.
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 987766542221111111100 01234788999999999887643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
.-....|+ +.-.+...|++++|++.|-.+... ...+..+...+...|....+..+|.+++.+.... ++.|+.....|
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 32222333 233566789999999998776543 2346778888889999999999999999877653 35568888999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---h
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---R 457 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~ 457 (613)
...|-+.|+-.+|.+..-+--+. ++-+..|...|..-|....-+++++.+|++..- +.|+..-|..+|..|.| .
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887554432 455778888888888888889999999998765 78999999999988876 5
Q ss_pred HHHHHHhhhh
Q 007193 458 YEKARTLNEH 467 (613)
Q Consensus 458 ~~~a~~~~~~ 467 (613)
|.+|.++.+.
T Consensus 676 yqka~d~yk~ 685 (840)
T KOG2003|consen 676 YQKAFDLYKD 685 (840)
T ss_pred HHHHHHHHHH
Confidence 7776665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-11 Score=117.76 Aligned_cols=283 Identities=14% Similarity=0.081 Sum_probs=203.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHH-HHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVD-RAFD 218 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~-~a~~ 218 (613)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+.-+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457788888885544 22334556677888888899999999998887651 1124556776664433221111 1222
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+.+.. +....+|.++.+.|+-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 413 Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 413 LIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22221 2335688888899998999999999998888876 446678888888888888899999988887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
... +...|..+.-.|.+.++++.|.-.|+...+.+ +.+.+....+...+-+.|+.++|++++++..... +.|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 433 44566667778888899999998888888876 5567777778888888899999999998887654 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677778889999999998887 45654 55667778888899988888888777763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-11 Score=116.74 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
+.++|...|.....+ +.-+..+...+..+|...+++++|+++|+.+.+.. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888775444 33445667778888888888888888888887652 123667777776544332 12222
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 185 YG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 185 ~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+. .+... -+-.+.+|-++.++|.-.++.+.|++.|++..+. .| ..++|+.+..-+....++|.|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 21 22221 1335678888888888888888888888888753 44 577788777778888888888888888766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.+ +..-..|.-+.-.|.+.++++.|.-.|+...+-++. +.+....+...+.+.|+.++|+.++++..... +-|+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 54 223345555677788888888888888888877654 66777777778888888899999888887765 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
-.-...+...+++++|+..++++++.- +.+...+-.+...|.+.|+.+.|+.-|..+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455566777888899999998888752 3345667777888888899999988888887743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-09 Score=99.01 Aligned_cols=269 Identities=14% Similarity=0.081 Sum_probs=188.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAV 213 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~ 213 (613)
..+.++|.++|-+|.+.. +.+..+--+|.+.|-+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457889999999988753 334555667888888899999999998888764 331 2334456677888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 007193 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~ 289 (613)
|.|+++|..+...+ .--....-.|+..|-...+|++|.++-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999988877531 12234566788888888889988888888877664433 223555666666677888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
.++.+..+.+.+ .+..--.+.+.....|++..|.+.++.+.+++...-+.+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888776543 3333344556777888888888888888888766666778888888888888888888888877753
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
+....-..+...-....-.+.|...+.+-... +|+...+..++..-.
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 33333344444444445556666665554443 688888888886543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-08 Score=93.47 Aligned_cols=398 Identities=11% Similarity=0.064 Sum_probs=291.9
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH
Q 007193 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV 101 (613)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 101 (613)
++..|-.++ ++..+..|+.++++....- |-...+..-.+.+-...|++.-|.++|++-. .|+...|++.|+.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 334454444 8999999999999988653 5444444444444556788999999998743 7999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~ 179 (613)
-.+-+.++.|..++++.+-. .|++.+|......--++|.+..|.++|+...+. |- ..+...+.+....-.++..++
T Consensus 184 ElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998854 799999999999999999999999999987653 10 112334455555555678899
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHH--------HHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007193 180 KAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV--------LAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.|.-+|.-.+.. ++.+ ...|......=-+-|+....... ++.+... -+-|-.+|--.+..-...|+
T Consensus 262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcCC
Confidence 999999888765 2222 23344443333334554333222 3344432 24566678888888888899
Q ss_pred hHHHHHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 007193 250 VDRAREVYKMIHKYNIKGTP--EVYTIAINC--------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG---- 315 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---- 315 (613)
.+...++|++.... ++|-. ..|...|-. -....+.+.+.++++...+. ++...+||.-+--.|+
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999998875 45521 122222211 13467889999999999884 3335677776655555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
++.++..|.+++...+ |..|...++...|..-.+.++++.+..++++..+.+ +-+..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 5678999999998775 557889999999999999999999999999999876 4567889888888888999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 396 VLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 396 l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+|+-...+. +.--...|-+.|+--...|.++.|+.+++++++.
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999988742 1113455667777777899999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-09 Score=100.23 Aligned_cols=285 Identities=16% Similarity=0.123 Sum_probs=183.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++..|+.+..+-.+++ +.....|..-..+.-..|+.+.+-..+.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888777766 3335566666777777888888888888877653245566666777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHH
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
.+++.+.+ +.+.........+|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 87777764 4456677777788888888888888888877652 2222 234555555444444444444455
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
+..+.. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|. ... .-.+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 244455666667777777777777777777776665544 111 123344555555555555544442 34
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
++-.+.+|...|.+.+.+.+|...|+..... .|+..+|+.+.++|.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466666777777777777777777755543 5677777777777777777777777666644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-10 Score=116.03 Aligned_cols=251 Identities=16% Similarity=0.162 Sum_probs=149.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 193 (613)
++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555566666666666666666666665555 5555555554555555666665555555554443
Q ss_pred CCCHHHHHHHHHHHHccCCHHH---HHH--------------------HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 194 KPDRVVFNALITACGQSGAVDR---AFD--------------------VLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~---a~~--------------------~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|...||..|..+|...||+.. ..+ ++..+.- ..+.-||..+ .+......|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHHHH
Confidence 4455556666666666655432 111 1111110 1122333222 33334455666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
+.+.+++..++...-.. +... +++-+.... .+++-....+...+ .|+..+|..++..-...|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 66666665554332111 1111 233332222 22333222222222 57889999999999999999999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007193 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
|.+.|++.+..-|..|+-+ .++..-+..+.+.|.+.|+.|+..|+...+..+.++|+
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999888888888766 77888888888999999999999998888777777665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-08 Score=98.59 Aligned_cols=378 Identities=11% Similarity=0.066 Sum_probs=240.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHcCCChHH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~ 110 (613)
.+.++|++++|++.+.+.+... |...+.+......|.+.|++++..+.-.+...- -+..++--.+++-+.|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3448999999999999999876 665777788888889999999988876665432 23455555667777888877
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH--------HHHHHHH-HHHCC--CCCCHHHHHHHHHHHHh-----
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------MFEVFHE-MVNAG--IEPNVHTYGALIDGCAK----- 174 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--------a~~~~~~-m~~~g--~~~~~~~~~~li~~~~~----- 174 (613)
|+.=..- .+++..+....-... |.+...+ +...+ +-|+....++....+..
T Consensus 202 al~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 202 ALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 7542221 112222211111111 1111111 11111 22343333333332211
Q ss_pred --------------------cC---CHHHHHHHHHHHHhC-CCCC-----C------HHHHHHHHHHHHccCCHHHHHHH
Q 007193 175 --------------------AG---QVAKAFGAYGIMRSK-NVKP-----D------RVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 175 --------------------~g---~~~~A~~~~~~m~~~-g~~p-----~------~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.+ .+..|.+.+.+-... -..+ | ..+...-...+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 01 122222222111100 0011 1 11111111123345778888888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
|+..+... +.+...|--+..+|....+.++....|++..+.+ +.++.+|..=...+.-.+++++|..=|++.....
T Consensus 349 ~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 349 FDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred HHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887642 2222236667778899999999999999998887 5667788887888888889999999999988875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 007193 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------ 373 (613)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------ 373 (613)
+. +...|--+.-+..+.++++++...|++.++. +|..+.+|+-....+...++++.|.+.|+...+. .|+
T Consensus 425 pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 425 PE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 43 5556666666667788999999999998877 5777889999999999999999999999987764 232
Q ss_pred -HHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 374 -VST--MNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 -~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+ --+++-. --.+++..|+.++++..+. .| ....|.+|...-.+.|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 1111111 1237888999999998874 45 557788888888999999999999987654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-09 Score=101.82 Aligned_cols=371 Identities=11% Similarity=0.043 Sum_probs=259.1
Q ss_pred HHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhH
Q 007193 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~ 145 (613)
++....+.++|...|++....|+..+..+...-.. ..-.+.+.++.+.... ...++.....+.....-...-+.
T Consensus 150 ~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~ 227 (611)
T KOG1173|consen 150 VYVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE 227 (611)
T ss_pred hhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc
Confidence 34455667788888877766666666554433221 1122222233332111 11222222222222211111111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
....-.+-.-.+...+.........-+-..+++.+..++++...+.. ++....+..=|.++...|+..+-..+=.++..
T Consensus 228 ~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 228 SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111111112334566666677777888999999999999998873 56666677677788899998887777777775
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD 303 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~ 303 (613)
. .|....+|-++.--|.-.|+..+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+. |..
T Consensus 307 ~---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-- 380 (611)
T KOG1173|consen 307 L---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-- 380 (611)
T ss_pred h---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--
Confidence 3 35567889999888888999999999999887765 233468999999999999999999999877653 321
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTM 377 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~~~~ 377 (613)
.-+--+.--|.+.+..+.|.+.|.+..... |.|+.+++-+.-.....+.+.+|...|+...+. + ...-..++
T Consensus 381 -lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 381 -LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 112233345778899999999999988774 778899999988888999999999999987631 1 01134568
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
+.|..+|.+.+.+++|+..+++.... .+-|..++.++.-.+...|+++.|.+.|.+.+- +.|+..+-+.++..+
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 88999999999999999999998875 245889999999999999999999999988775 789987777777653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-08 Score=95.37 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=211.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.|++.+|+++..+-.+.+ +.....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999988877776 3334456666677778899999999998887763355566666777788888999999888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 292 (613)
++++.... +.+..+......+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88877642 445677788889999999999999999999888865553 35666666666666666655666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 293 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
+..... .+-+...-.+++.-+.++|+.++|.++..+..+++..|. ... .-.+.+.++.+.-.+..+.-.... +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666543 233556667788888889999999999988888876665 222 223556677666666665543321 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 446788888889999999999999997776 478999999999999999999999988887663
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-12 Score=85.58 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007193 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-12 Score=85.16 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-09 Score=111.84 Aligned_cols=248 Identities=13% Similarity=0.013 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHhCC---CCCHHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007193 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (613)
.+++++|..+|++.. +.+...|..+...+. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988754 234455655554433 2345789999999998875 557788888888889999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4457778888899999999999999999998763 442 23334445566688999999999
Q ss_pred HHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 007193 221 AEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (613)
Q Consensus 221 ~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 298 (613)
.+..... +| +...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 8886531 24 34456667788889999999999998876543 334555667777777777 4777777776542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
...|....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 504 ~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 122222233333 34445666666555 7777664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-07 Score=90.78 Aligned_cols=406 Identities=14% Similarity=0.128 Sum_probs=251.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
.++++|++..-+..|++..+.-.+.....++...+++..+.+-.+-+.+++.+-..-++..-+--|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 45689999999999998887765555666677778888888888899999988776666777888888999999999999
Q ss_pred HHHHHHHc------CCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007193 114 VLRLVQEA------GLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 114 ~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~ 182 (613)
.+...... ..+.+...|.-+-+..++.-+.-. ..++++.+... -+| ...|++|.+-|.+.|.+++|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 88877532 125566677777777766644332 23344444432 234 357999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHhhCCCCC----------
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGA----------------------VDRAFDVLAEMNAEVHPV---------- 230 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~m~~~~~~~---------- 230 (613)
++|++.... ..+..-|..+.++|+.-.. ++-.+.-|+.+.... ++
T Consensus 269 Dvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-~~~lNsVlLRQn 345 (835)
T KOG2047|consen 269 DVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR-PLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc-chHHHHHHHhcC
Confidence 999998765 2344445555555543211 222233333333210 10
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007193 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 304 (613)
+.++..|..-+. ...|+..+-..++.+..+. +.|. ...|..+...|-.+|+.+.|..+|++..+...+ ..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v 421 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TV 421 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-ch
Confidence 111222222221 2235556666666666543 1221 346888889999999999999999998876443 22
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCc------CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 305 ----VFLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISV------GIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 305 ----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
.+|..-...=.+..+++.|+++.+...... .++ +..+|...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 233333334445667788888777654321 111 23345555666667788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh---hcCCHHHHHHHHHHHHHcC
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE---RKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~g 439 (613)
++.+..+-......| ....+-.+.-++++.+++++-+..=-.|+. ..|++.+.-+. ..-.++.|+.+|++.++ |
T Consensus 502 riidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 888765422222222 222344556677888887764443123444 34555554332 23467888888888887 5
Q ss_pred CCCCHHHHHHH
Q 007193 440 VIPNLVMFKCI 450 (613)
Q Consensus 440 ~~p~~~~~~~l 450 (613)
+.|...-+-.|
T Consensus 580 Cpp~~aKtiyL 590 (835)
T KOG2047|consen 580 CPPEHAKTIYL 590 (835)
T ss_pred CCHHHHHHHHH
Confidence 66554433333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-09 Score=98.13 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2223344444444444444444444444444332 222333334444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
..|++++|.+.+.+..... ..+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 011112233333344444444444444444444332 22233344444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
...+++..... ..+...+..+...+...|+.++|..+.+
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444443331 1122333333333334444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=116.99 Aligned_cols=253 Identities=18% Similarity=0.185 Sum_probs=180.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (613)
.++..+...|+.||.+||.++|.-||..|+++.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988877888999999999998888876543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHh----cCCCCCHHHHH---------------HHHHHHHhcCCH
Q 007193 228 HPVDPDHITIGALMKACANAGQVDR---AREVYKMIHK----YNIKGTPEVYT---------------IAINCCSQTGDW 285 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~---------------~li~~~~~~g~~ 285 (613)
.|...+|+.|..+|...|++.. ..+.+..+.. .|+ .....|- ..+......|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4667799999999999999755 2222221111 121 1111111 122233344555
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
+.+++++..+..... .|..+ +++-+..... +++-..+...... .|++.+|..+++.-...|+.+.|..++.
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 555555555433211 11111 2333333222 2222222222222 5899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
+|.+.|++.+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+..|..+|..
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 99999999998888888777 777888888999999999999999999888887775543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-09 Score=98.03 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665543 334555666666666666666666666666655432 34455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (613)
+...|++++|...+....+... +.....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666677777766666655321 2233455556666777777777777777766543 2335566667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777776664 233455556666666777777777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-08 Score=108.40 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=153.7
Q ss_pred CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHH
Q 007193 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (613)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~~~ 259 (613)
.+...|...+.+-.. .++.++|..+|++.... .|+ ...+..+..+|. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344455544444211 13456788888877753 343 344544444333 22346788888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 007193 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (613)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (613)
..+.+ +.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++...+... .+.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCh
Confidence 87776 556777777777778888888888888888776543 455677777778888888888888888877652 223
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVA 418 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a 418 (613)
..+..++..+...|++++|...+++..+...+.+...+..+...+...|+.++|...+.++... .|+..+.. .+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344456667788888888877765431223455666777777888888888888776553 45444433 33345
Q ss_pred HhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 007193 419 CERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 419 ~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 454 (613)
+...| +.+...++.+.+ ..-.|.......++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 56666 366666666554 23334333334455444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-08 Score=95.37 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=222.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
+...++.......+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.++.+. .+-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 445567777777788888899999999999988765 667777777788888999888888777788766 244577899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
++.--|...|...+|.+.|.+...-...+ ...|-.....|+-.|..+.|...+....+.= +...-.+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 98888888899999999999876432222 3478888889999999999998887665531 1111122223445778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCcCHHhHHHHHHHHHhcCCH
Q 007193 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (613)
.+..+.|.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..... + ..--..+++.|..+|.+++.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999988766433 6677777766667778899999999887622 1 112345689999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (613)
++|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+.+.++..
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999988754 57889999999999999999999999999876 68999888887763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-06 Score=82.24 Aligned_cols=421 Identities=15% Similarity=0.123 Sum_probs=243.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHH--HHHHH--
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC-- 102 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~-- 102 (613)
.-....|...++|++++|.+...++...+ |.+......-.-...+.+.+++|+++.+.-... .+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 33445567778999999999999999877 554443333333456778899999777654321 11122 23443
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
.+.+..++|+..+. |..+ |..+...-...+.+.|++++|..+|..+.+.+.+ + +...+.+-+-. ...+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a--~~a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLA--VAAA 158 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHH--HHHh
Confidence 46889999998887 3333 3446666677888999999999999999876422 2 22222111100 0001
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHh
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACAN 246 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~--------~~~~---~~~~~~-~~~~ll~~~~~ 246 (613)
... +.+......| ..+|..+. ..+...|++.+|+++++.... ...+ +..+.. .-..+...+-.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0122222233 23444433 345567888888888877621 1000 000111 11234455667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhc-----------------------------------------
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQT----------------------------------------- 282 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~----------------------------------------- 282 (613)
.|+.++|..++..+.+.+....+ ..-|.++..-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776532211 1112222111000
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 283 ----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 283 ----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
+..+.+.++.... .+-.|. ..+..++..+.+. .....+..++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 1111111111111 112232 3344444443322 245667777776665543333556677778889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHhhc
Q 007193 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTIT----YSILLVACERK 422 (613)
Q Consensus 357 ~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t----~~~ll~a~~~~ 422 (613)
.|.+++. .+.+.+..|-. ..++...+.+.+..+-|..++.+.... .-.+.... +.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 66665545544 455677777777777788877776541 01222233 33333344567
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhhhc
Q 007193 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (613)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (613)
|+-++|...++++.+. ..+|..+...+|.+|++ .-++|..+...+..
T Consensus 472 G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred CchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCCC
Confidence 9999999999999984 35788899999999998 77888887776543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-09 Score=96.17 Aligned_cols=228 Identities=15% Similarity=0.009 Sum_probs=106.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
.+.++|.+.|.+.+|.+.|..-... .|-+.||..|-+.|.+..+++.|+.+|.+-.+. ++.++....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 3444555555555555555444332 233334444455555555555555555444433 12232223334444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 007193 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (613)
.++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ .++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 45555555555555444322 333444444444445555555555555555542 2344455554455555555555555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 362 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|.+....--.|+ ...|-.+-......|++.-|.+.|+-....+ .-+...++.+.-.-.+.|++++|+.++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 554443222222 2334444444445555555555555544432 22334455554445555555555555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-07 Score=95.03 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHc-----
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQ----- 209 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~----- 209 (613)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+... .|+...|.. +..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 345666677776666554332 1222334445556666667777777777777666 344444433 3333311
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
..+.+...++++++... -|.......+.-.+..-..+ ..+...+..+..+|+| .+|+.+-..|....+.+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12455666666666543 12222222221111111122 2344455666667754 4666676666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 289 CSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 289 ~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
.+++...... + -.|.. .++..+...|...|++++|+++.+..+.+. |..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555554321 1 12333 244556677788899999999998888875 33467788888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHhhcCC
Q 007193 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT------Y--SILLVACERKDD 424 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------~--~~ll~a~~~~g~ 424 (613)
|++.+|.+.++.....+ .-|...-+-.+..+.++|+.++|.+++....+.+..|-... | .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888888765 34555666677778888999999988888776654442211 1 233467888898
Q ss_pred HHHHHHHHHHHHH
Q 007193 425 VEVGLMLLSQAKE 437 (613)
Q Consensus 425 ~~~a~~~~~~m~~ 437 (613)
+..|++-|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-07 Score=95.64 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=179.9
Q ss_pred HhhhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CC
Q 007193 71 CKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (613)
....|++++|+.+++... -.| ..........+.+.|+.++|..+++.+.+.+ +.+..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 344555666666655432 123 3344555677888888888888888888875 44455555555555222 24
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007193 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (613)
.+...++|+++... -|.......+.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56677788877654 23333333222222222223 2445556667777753 356666666665555555555555
Q ss_pred HHhhCC------------CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 222 EMNAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 222 ~m~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
...... ..-+|... ++..+...|...|++++|..++++..+.. +..+..|..-...+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 543210 01134443 33455677788888999999888888875 4446778888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh--------HHHHHHHHHhcCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (613)
|.+.++.....+.. |...-+.....+.+.|++++|.+++....+.+..|-... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 98888888887765 777777778888888888888888888877654222111 133456677777777777
Q ss_pred HHHHHHH
Q 007193 360 ELYEHMK 366 (613)
Q Consensus 360 ~~~~~m~ 366 (613)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 7666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-09 Score=94.96 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
|-.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-+.|.+..+.+.|+.++.+-... ++-|+....-+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhh
Confidence 3333466778888888888888888887776 566677777888888888888888888877653 23344444456
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 320 (613)
...+-..++.++|.++++...+.. +.++.....+...|.-.++++.|++.++++...|+. +...|..+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 677778888888888888887765 556666777777888888888888888888888876 677788887788888888
Q ss_pred HHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 321 EAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
+-++.-|.+....-..|+ ..+|..|-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|+.++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 888888887766543333 3466677777778888888888888777654 3456778888877888888888888888
Q ss_pred HHHhCCCCCC
Q 007193 399 DMKSLGLCPN 408 (613)
Q Consensus 399 ~m~~~g~~p~ 408 (613)
.... +.|+
T Consensus 454 ~A~s--~~P~ 461 (478)
T KOG1129|consen 454 AAKS--VMPD 461 (478)
T ss_pred Hhhh--hCcc
Confidence 7765 3454
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-06 Score=82.27 Aligned_cols=389 Identities=13% Similarity=0.117 Sum_probs=198.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
..+++...+.+.+.+.++. |......+..+-.....|+-++|........ ..+.+.|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456666666666666533 3333333333323334455566665555433 2345566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (613)
.|+.....+ +.|...+.-+.-.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666554 4445555555444455566655555555554432 2234456666666666666666666666665442
Q ss_pred CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007193 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNI 265 (613)
Q Consensus 193 ~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (613)
-.|+...+.-.. ....+.|..++|.+.+..-... ..|... -.+-...+.+.+++++|..++..+..++
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 134444333221 1233445555555555443221 112222 2223345556666666666666665553
Q ss_pred CCCHHHHHHHHHHHHhcC-----------------------------------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 266 KGTPEVYTIAINCCSQTG-----------------------------------DWEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g-----------------------------------~~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
+.+..-|-.+..++.+-. -.+..-+++..+.+.|+.+ ++..+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 222222222222222111 1222333444444555442 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CC----------CCcCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 311 IDFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (613)
.+.|-.....+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|....+....+ .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 3333222211111111111111 11 13444433 34566777888888888888877764 4653
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 375 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 375 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
..|..=.+.+...|.+++|...+++..+.. .||...-+--..-..+..+.++|..+.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 345555677788888888888888877654 34544433444444567788888888888877664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-06 Score=77.44 Aligned_cols=398 Identities=12% Similarity=0.037 Sum_probs=179.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
-.+.++.+-+...+..|.+-|....+... .+.+.......+..+...++-+.|.....++|+
T Consensus 46 l~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~ 125 (564)
T KOG1174|consen 46 LLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP 125 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCc
Confidence 34455555677788888888887665421 122233333444555566677788888887774
Q ss_pred C-CHHHHHHHHHHHHcCCC-hHHHHHHHHHHH--------------HcC---------------CCCCHHHHHHHHHHHH
Q 007193 90 P-TLSTFNMLMSVCASSKD-SEGAFQVLRLVQ--------------EAG---------------LKADCKLYTTLITTCA 138 (613)
Q Consensus 90 ~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~--------------~~g---------------~~~~~~~~~~li~~~~ 138 (613)
. ...--|.|+.-+-+.|- -.++.--+.... +.+ ++|...+....+.+++
T Consensus 126 t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~A 205 (564)
T KOG1174|consen 126 TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALA 205 (564)
T ss_pred cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHH
Confidence 3 33334444444333321 111111111111 111 1122222222233332
Q ss_pred Hc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCCHH
Q 007193 139 KS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQSGAVD 214 (613)
Q Consensus 139 ~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~ 214 (613)
.+ ++...+.+.+-.+... -++-|+.....+...+...|+..+|...|++.... .|+..+-- .-.-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence 22 2222333333222211 12344555555555556666666666666555533 22222110 1111223444555
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
....+...+.... .-....|-.-........+++.|+.+-++..+.+ +.+...+-.-...+...+++++|.-.|+.
T Consensus 284 ~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 284 QDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 4444444443210 0111111111222233345555555555554443 22333343334445555666666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCC
Q 007193 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 295 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
.+...+ -+...|..|+..|...|++.+|.-+-+...+. ++-+..+.+.+. ..+. ...--++|.++++.-... .|
T Consensus 360 Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P 435 (564)
T KOG1174|consen 360 AQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NP 435 (564)
T ss_pred HHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CC
Confidence 554422 14455666666666666666555554444332 122333333321 1111 111224555555544432 34
Q ss_pred C-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 T-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+ ....+.+...+...|..++++.+++.... ..||....+.+...+.....+++|...|.....
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4 23444455555556666666666655544 245666666666666666666666666555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-07 Score=96.02 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----C--
Q 007193 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (613)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (613)
..+...+...|...|+++.|..++...... ..| ..|.+.+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666888999999999999998876542 112 1233332 334667888999999999999887542 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (613)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111245677888889999999998888877543 1222 222 34667777888999999999998876543 1
Q ss_pred CCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-
Q 007193 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNALITALCDGDQLPKTMEVLSDMKS- 402 (613)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 402 (613)
+.+ -..+++.|...|.+.|++++|.++|+..... +.+ + ....++.|...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2457899999999999999999999987642 111 1 245678888999999999999999987543
Q ss_pred ---CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 403 ---LGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 403 ---~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 223 3678899999999999999999998776
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-07 Score=93.17 Aligned_cols=239 Identities=16% Similarity=0.137 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-V 193 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 193 (613)
..+...|...|...|+++.|..++....+. |. .|... ..+.+...|...+++.+|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445556778888888888888888776543 21 12222 2333556677777777777777776532 2 1
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 007193 194 KPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPV-DPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (613)
Q Consensus 194 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 264 (613)
.|. ..+++.|..+|.+.|++++|...+++..... .+. .|.+ ..++.+...++..+++++|..++++..+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 121 3356666667777777776666655543210 011 1221 223445555666666666666665443210
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 265 IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 265 ~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
..+ -..+++.|...|.+.|++++|.++|++.... +. .+ ....++.+...|.+.+...+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 011 1234566666666666666666666655431 11 11 1233445555555555555555555443211
Q ss_pred ----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 334 ----G--ISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 334 ----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
| .+....+|..|...|.+.|+++.|.++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112234444555555555555555444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-06 Score=76.71 Aligned_cols=389 Identities=11% Similarity=0.043 Sum_probs=233.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
..-++.+.++..|+.+++--...+- .....+..-+...+-..|++++|+..|..+. .++...|-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4557788999999999987654432 1222334444555667899999999998754 45666777776666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+|.++-... +.++-.-..|+....+.++-++-..+...+.. ...---+|.+..-..-.+.+|++++.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888875543 33344455566777788888887777777653 2233445555555556789999999999
Q ss_pred HhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
... .|+-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....|.......+.=.-..|..-...+.+.+-..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 876 46666666444 4667777788888888777654 33344555544444444322233333334443332111
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 268 TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 268 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
...+.-.+++ ..-+.|++++-.+.+. .|. .-..++-.|.+.+++.+|..+.+.+.-. .|-....
T Consensus 253 -----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Eyil 321 (557)
T KOG3785|consen 253 -----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYIL 321 (557)
T ss_pred -----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHH
Confidence 1223333443 3446777777666553 332 2234455677888888888877665321 2222222
Q ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 343 SSLMGACSNAK-------NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 343 ~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
-.++ ++..| .+.-|.+.|+-.-+.+..-| +.--.++.+.+.-..++++.+..+.....- +..|...--.
T Consensus 322 Kgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N 398 (557)
T KOG3785|consen 322 KGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN 398 (557)
T ss_pred HHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH
Confidence 2222 22222 35566677766655544333 223445666666777888888888777664 3334333345
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (613)
+..|.+..|++.+|.++|-++....+ .|..+|.+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 67888889999999988866653222 3455666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-06 Score=80.08 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=105.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
.-.|+.-.|.+-|+........++. .|--+..+|.+..+.++....|....+.+ +-++.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456677777777777776554333 25555566777777777777777777765 456667777677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.=|++..+.. +-+...|-.+-.+.-+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+..++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777777643 233555666666666777777777777777664 444566777777777777777777777777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-05 Score=77.46 Aligned_cols=354 Identities=13% Similarity=0.103 Sum_probs=235.4
Q ss_pred hhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007193 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
..+++...+++.+.+. +....|.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455666666655543 2234454444445677899999999988888754 55788999998888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 007193 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (613)
|......+ +-|...|.-+.-.-++.|+++.....-.++.+.. +-....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5577888877777788889888888877777652 33456788888899999999999999999877532
Q ss_pred CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007193 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 303 (613)
..|+...+.-.. ......|.++.|.+.+...... +......-.+-...+.+.+++++|..++..+.... ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 345555554332 3456678888888887665443 22223344566778899999999999999999874 66
Q ss_pred HHHHHHHHHHHH-hcCCHHHHH-HHHHHHH----------------------------------HCCCCcCHHhHHHHHH
Q 007193 304 EVFLSALIDFAG-HAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (613)
Q Consensus 304 ~~~~~~li~~~~-~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (613)
..-|...+..+. +..+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 666655544333 232323333 4444433 233222 2222222
Q ss_pred HHHhcCCHH----HHHHHHHHHHhCC----------CCCCHHHHHH--HHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H
Q 007193 348 ACSNAKNWQ----KALELYEHMKSIK----------LKPTVSTMNA--LITALCDGDQLPKTMEVLSDMKSLGLCPNT-I 410 (613)
Q Consensus 348 ~~~~~g~~~----~A~~~~~~m~~~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 410 (613)
.|-.....+ -+..+...+...| -+|+...|+. ++..|-+.|+++.|...++..... .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 221111111 0111111111111 1566666654 677788999999999999998874 6765 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|..=.+.+.+.|++++|..++++..+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 4666668899999999999999998864
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-06 Score=85.36 Aligned_cols=219 Identities=11% Similarity=-0.026 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+..+.+..-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555555565555431 22222 2345566666777777778877777777765 45667777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
...|+...+..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888777765433 45566667777777788888888887777654 22221122222234566778888888654432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (613)
. .|+. |.. .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222 221 1222234555444 344444321 0 111 23467777888888888888888888888743
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-07 Score=88.15 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777777654 4456777777777777777777777777776653 23456666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (613)
...|++++|.+.|++..+. .|+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 7777777777777777665 333221111222233456677777777554431 12332221 222 223444433
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 253 A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
+ ..+..+.+ ... +.....|..+...+.+.|++++|...|++....++ ||.+-+..
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 3 23333331 111 12245677777778888888888888887776653 24444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-05 Score=73.11 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=106.7
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007193 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
.++..|-+.+ +.|++++|...+.-+.+++-.| .. +...+.-...-.|.+.+|..+-.+.+. ++-.-..++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-~e-l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP-AE-LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC-cc-cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 4677776666 8999999999999888765322 22 222233223345788899888777653 34445556666777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (613)
.++-++-..+.+.+... ..---+|.+.....-.+.+|++++...... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 78877777777766542 122334555555555788999999998866 45555555433 35667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 007193 184 AYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~ 205 (613)
++.-..+. ++-++...|....
T Consensus 207 vl~vYL~q-~pdStiA~NLkac 227 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHH
Confidence 77777665 2333445554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-06 Score=75.09 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=98.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007193 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (613)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (613)
.|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.--..+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34444555555555555555555543 2234455555555555555555555555555432 223334444444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
.+++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|...
T Consensus 118 ~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555442 1111123344445444555555555555555555544 23334455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 292 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555444 4555555555555555555555444444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-05 Score=80.36 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 007193 418 ACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~ 437 (613)
++...|+.++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666655543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-05 Score=79.55 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHH
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCC 279 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~ 279 (613)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++. ..|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344555555555555555554421 22233444455555555555555555555444321 1111 1233445555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007193 280 SQTGDWEFACSVYDDMT 296 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~ 296 (613)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 55555555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-06 Score=74.72 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|+........ +....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334455666666666666666666655 445556666666666666666666666666655433 444455555555666
Q ss_pred CCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 318 GKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
|++++|...|+...... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655542 12223455555555566666666666666666543 12234455566666666677677666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 397 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++.....+. ++..+....|..-...|+.+.+-++=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655543 6666666666666666666666555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00013 Score=73.41 Aligned_cols=453 Identities=11% Similarity=0.154 Sum_probs=282.4
Q ss_pred hhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHH-------Hh-------hhHHHHHHHHHHHhCC
Q 007193 26 SEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNV-------CK-------SQKAIKEAFRFFKLVP 88 (613)
Q Consensus 26 ~~~~~~~~~l~--~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~-------~~-------~~~~~~~A~~~~~~~~ 88 (613)
+-++.+|-.+| +.|.. .+-..+|++..+.-. .....++..+-.- |- -++-++.++.++.+||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 45778898888 45544 445667788777542 3344444433111 10 1223444444444444
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
..|-.-+....+.|++..-...|+.....- +.--...|...+......+-++-+..+++..++. ++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 568888888889999999999998877542 2223457888888888889999999999998854 4555777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCC--HHH
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPD--HIT 236 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~--~~~ 236 (613)
-|.-+++.+++++|.+.+....... .+.+-..|..+-+..+++-+.- ....++..+.. .-+| ...
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~----rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR----RFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc----cCcHHHHHH
Confidence 8888999999999999998876431 2445556777666666554332 23344544443 2455 467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cCC------HHHHHHHHHH
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TGD------WEFACSVYDD 294 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g~------~~~a~~~~~~ 294 (613)
|++|.+-|.+.|.+++|..+|++....-.. ..-|+.+-+.|++ .++ ++-.+.-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999887665321 1223333333322 111 2223333444
Q ss_pred HHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHHhHHHHHHHHHhcCCHHH
Q 007193 295 MTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (613)
Q Consensus 295 m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 357 (613)
+..... .-++..|..-+. ...|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333211 012223332222 2346677778888887765 122 13468888999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----------CCC-------CHHHHHHHHH
Q 007193 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLG----------LCP-------NTITYSILLV 417 (613)
Q Consensus 358 A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~ll~ 417 (613)
|..+|++..+...+.- ..+|..-...=.++.+++.|+++.+.....- -.| +...|+.+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887543222 3456666666778889999999988765321 111 2234666666
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCC-----cccchhhhH-------
Q 007193 418 ACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTS------- 484 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~------- 484 (613)
--...|-++..+.+++++++..+. |.+..--++. +++-.-.+++...++.+- |..-..|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmf------LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF------LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 667788899999999999985544 4333222221 333333344444444431 223345665
Q ss_pred --------HHHHHHHHHHHcCCCCcHH
Q 007193 485 --------LALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 485 --------~a~~~~~~m~~~g~~p~~~ 503 (613)
.|-.+|++.++ |..|...
T Consensus 560 rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 38888999888 7778764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-05 Score=78.81 Aligned_cols=373 Identities=14% Similarity=0.045 Sum_probs=199.2
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (613)
.|+..++..+.-+....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35555555555555667788888888877542 345567777777777777777777776655332123 23333323
Q ss_pred HHHHH-HcCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCC-CCCC
Q 007193 134 ITTCA-KSGKVDAMFEVFHEMVNA--GI--EPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKN-VKPD 196 (613)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~ 196 (613)
-..|. +.+.++++...-.+.... +. ......|-.+.-+|... ....++++.+++..+.+ -.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33332 234555555444444331 10 11222333333333221 12455666666665542 2233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC---------
Q 007193 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIK--------- 266 (613)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~--------- 266 (613)
..-|-++ -|+..++++.|.+...+..+-+. ..+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3333222 34455566666666666554311 234455555555566666666666666544322 100
Q ss_pred ---------CCHHHHHHHHHHHHh------c-----------------CCHHHHHHHHHHH-----------------HH
Q 007193 267 ---------GTPEVYTIAINCCSQ------T-----------------GDWEFACSVYDDM-----------------TK 297 (613)
Q Consensus 267 ---------~~~~~~~~li~~~~~------~-----------------g~~~~a~~~~~~m-----------------~~ 297 (613)
....+...++..+-. . ++..++.+....+ ..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 000111111111110 0 0111111111110 00
Q ss_pred CCC--CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 298 KGV--IPDE------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 298 ~g~--~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
.-+ .|+. ..|......+.+.+..++|...+.+..+.. +.....|......+...|.+++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 001 1121 223444556666777777777776666553 4556667666677777888888888887776543
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+-++.+.+++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|.....
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2336677788888888888777777 888887754 34677788888888888888888888876654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.2e-06 Score=77.71 Aligned_cols=268 Identities=9% Similarity=-0.048 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
+.|+.....+.+.+...|+.++|...|+..... .|+.. ....-.-.+.+.|+.+....+-..+.... ..+..-|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 345555566666666666666666666655533 22211 11112222345555555555555544321 122223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
-.......++++.|+.+-++.+... +.+...|-.--..+...++.++|.-.|+....- -+-+..+|..|+..|...
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhh
Confidence 3333444555666666655555432 112223322224455556666666666555432 123455666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAI-NCC-SQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 324 (613)
|++.+|..+-+...+. ++.+..+.+.+. ..+ -...--++|.++++.-.... |+ ....+.+...|...|..+.+.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHH
Confidence 6666655544433322 122233333331 111 12222345555555554432 22 223444455555566666666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
.+++..... .||...-+.|.+.+.....+.+|.+.|....+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 666655543 355555666666666666666666666655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00011 Score=83.80 Aligned_cols=337 Identities=9% Similarity=-0.039 Sum_probs=208.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 173 (613)
....|+++.+...++.+.......+..........+...|+++++...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777666666542211112222333445556678999999998887654210 111 112222334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~ 246 (613)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455566677899999999998887642111111 12344556677888
Q ss_pred cCChHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~~ 315 (613)
.|+++.|...+++.... +... ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998776442 2111 1233455666677889999999999887542 1112 2234444566777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCcCHH--h--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 007193 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 386 (613)
..|+.++|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111111 0 01122445568999999999877654221111 1123456677889
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987652 33322 235566667889999999999999998864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00014 Score=72.44 Aligned_cols=380 Identities=12% Similarity=0.116 Sum_probs=211.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (613)
.=.||+.++|++|+.+.+.=.... ..+... +-.+| .+.+..++|+..++...+.+..+...-...+.+.++++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~--~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALL--VINSFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhh--hcchhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHH
Confidence 335779999999986655332110 111110 22222 24677899999999666666667777778899999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKAGQVAKAFGAY 185 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~ 185 (613)
+|+.+|+.+.+++.... ...-..++.+-.. -.+ ++.+... ..| ..+|..+.+ .++..|++.+|++++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999987763211 1111111111110 001 1122111 122 223333332 345567777777777
Q ss_pred HHHHhC-------C------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHhc
Q 007193 186 GIMRSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANA 247 (613)
Q Consensus 186 ~~m~~~-------g------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~ 247 (613)
+..... + +.-+..+ -.-|.-.+-..|+..+|..++....... ++|.. .-|.|+.+-...
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhcccc
Confidence 766211 1 0001111 1123334556677777777777766542 22221 111111110000
Q ss_pred ---------------------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Q 007193 248 ---------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ- 281 (613)
Q Consensus 248 ---------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 281 (613)
+..+.+.++-.... +..| ...+.+++....+
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKV 352 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHH
Confidence 01111111111100 1112 2334444443332
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 282 -TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 282 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
...+..+.+++....+....-.....-..+......|+++.|.+++. .+.+.+..| .+...++..+.+.
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKI 430 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhc
Confidence 22466777777777665443234556666777888999999999999 555555444 4556777788888
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 007193 353 KNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (613)
++-+.|..++.+.... .-.+. ..+|.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +++
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHH
Confidence 8888788887766431 00122 2334444445567899999999999999853 67889999999998876 577
Q ss_pred HHHHHHHHH
Q 007193 427 VGLMLLSQA 435 (613)
Q Consensus 427 ~a~~~~~~m 435 (613)
.|..+-..+
T Consensus 509 ka~~l~k~L 517 (652)
T KOG2376|consen 509 KAESLSKKL 517 (652)
T ss_pred HHHHHhhcC
Confidence 777765544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0002 Score=66.63 Aligned_cols=300 Identities=12% Similarity=0.092 Sum_probs=185.6
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (613)
|....-|.-++......|++.+|+..|.....-|+..|.++.+ .|...|+...|+.=+..+.+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3455556667777777889999999999888888888877764 588889999898888888864 677432 2223
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----H------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT----Y------------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 197 (613)
...+.+.|.+++|..=|+.+++.. |+..+ + ...+..+.-.|+...|+.....+++.. +-|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 345678999999999999988763 32111 1 122333445677777777777777652 3455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH----HH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YT 273 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~ 273 (613)
..+..-..+|...|++..|..-+....+. -..+..++--+-..+...|+.+.++...++..+.+ |+... |.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YK 264 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHH
Confidence 56666667777777777777666555432 12344455555566677777777777777766643 33221 11
Q ss_pred HH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh
Q 007193 274 IA---------INCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (613)
Q Consensus 274 ~l---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (613)
.+ +......++|-++++-.+...+..+...... +..+-.++...|.+.+|++.-.++.+.. +.|+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11 1122334556666666665555433312222 2233344445566667776666666543 334666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
+.--..+|.-...++.|+.-|+...+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666666677777666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-07 Score=84.69 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEIL 327 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 327 (613)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 2344445555555555555555555555554443322 333444444444444444 3344444
Q ss_pred HHHHH
Q 007193 328 QEAKN 332 (613)
Q Consensus 328 ~~~~~ 332 (613)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-08 Score=60.36 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.3e-05 Score=75.96 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=96.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (613)
+......+.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455556666665555431 12223555556666666666666665443 124445556666666666
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
|.++-.+.. +.......|-+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..++.+++..+-
T Consensus 810 a~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 810 AFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 666555442 2233334444444445555666666555433221 11 1245566666666555555442
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 296 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
-... -..|...+..-+...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 2111 1233444455555666666666554332 124455566666666666665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00021 Score=73.47 Aligned_cols=362 Identities=12% Similarity=0.022 Sum_probs=234.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--C--C-CHHHHHHHHHHHHc-CCC
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKD 107 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~~~ 107 (613)
++.++|+++.+.+.|++....-+ .....++.. .-.+...|.-..|..+.+.-. . | |+..+-..-+.|.+ .+.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~-als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSF-GEHERWYQL-ALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH-HHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 34588999999999998765432 223333332 222334455577888877532 2 3 33344333444543 466
Q ss_pred hHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 108 ~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
.++++....+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-|..+.-.+.--|
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 77777777666652 11 12344555555555432 12356788888887765 22333333333457
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC------------------CCCH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------DPDH 234 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------~~~~ 234 (613)
+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....+. |. ....
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHH
Confidence 7788999999999998887656788888888888888888888888877665431 11 0112
Q ss_pred HHHHHHHHHHH------hc-----------------CChHHHHHHHHHH--------HhcC---------CCCC------
Q 007193 235 ITIGALMKACA------NA-----------------GQVDRAREVYKMI--------HKYN---------IKGT------ 268 (613)
Q Consensus 235 ~~~~~ll~~~~------~~-----------------g~~~~A~~~~~~~--------~~~~---------~~~~------ 268 (613)
.|+..++..+- .. ++..+|.+....+ ...+ +.|.
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 33444433332 00 1122222221111 1111 1111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007193 269 --PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 269 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (613)
...|......+.+.+..++|...+.+...... -....|......+...|..++|.+.|......+ |.++.+..++.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala 725 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 22466677788888999999888888766532 255667777777888899999999999888775 56778899999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 347 GACSNAKNWQKALE--LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 347 ~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.++.+.|+...|.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|.-..+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999888887 999998876 46789999999999999999999999988765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=83.32 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AG 318 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 318 (613)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554321 223444445555555555555555555555432 12 222223332222 12
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVL 397 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~ 397 (613)
.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ +.+..+...+|......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554333 34455555555555555555555555555544332 22334444444444444444 3344444
Q ss_pred HHHHh
Q 007193 398 SDMKS 402 (613)
Q Consensus 398 ~~m~~ 402 (613)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-08 Score=59.86 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
|+.||..|||+||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00031 Score=80.22 Aligned_cols=333 Identities=10% Similarity=0.011 Sum_probs=209.6
Q ss_pred hhhHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAK 139 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~~ 139 (613)
...|+++.+...+..++. .++.........+...|++++|...++.....-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344666777777776641 2233333444556678999999999887754310 1111 122223345567
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcc
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQS 210 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~ 210 (613)
.|++++|...+++....--..+. ...+.+...+...|++++|...+++.... |- .+...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987753111121 34456666778899999999999887642 21 11123445566778889
Q ss_pred CCHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 007193 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~ 281 (613)
|++++|...+++..... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887764421 1111 1 22334455566777899999999988765431 111 23345556677888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhc
Q 007193 282 TGDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 352 (613)
.|++++|.+.+......... .....+ ...+..+...|+.+.|...+........... ......+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999887542110 011111 1122445567899999988776544221111 11134567778899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999987642 32222 3456667778889999999999999988753
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00018 Score=71.14 Aligned_cols=405 Identities=15% Similarity=0.071 Sum_probs=224.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~ 108 (613)
-|.....|+++.|+.+|-+.+..+ |.+.+.++.-...+.+.|++++|++=-.+.. .|+ +.-|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 366778999999999999998877 6687777777788888899988887655443 232 45788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-----GCAKAGQVAKAFG 183 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-----~~~~~g~~~~A~~ 183 (613)
++|+..|.+-.+.. +.+...++.+.+++.... .+.+.|. ++..|..+.+ .+...-.+..-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999888764 555667777777761110 1111111 1111111111 1111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHH-HHHH------------HHHhhCCCCCCCC----------HHHHHH
Q 007193 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVL------------AEMNAEVHPVDPD----------HITIGA 239 (613)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a-~~~~------------~~m~~~~~~~~~~----------~~~~~~ 239 (613)
.+..-... +...+ ...++.+.......+.- +..- ..+... .+...| ..-...
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNG-FPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCC-CCccchhHHHHHHHHhhhHHHH
Confidence 11100000 00000 00011111100000000 0000 000000 000001 112445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-------LID 312 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-------li~ 312 (613)
+.++..+..+++.|.+-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666777778888888888777765 34455677777888888888877777776665543 2222332 333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChh
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~ 391 (613)
+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|... ---.=...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 556667888888888886655434332 22334445555555444332 23321 1111255677889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhhHHHHHHhhhhh
Q 007193 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF---KCIIGMCSRRYEKARTLNEHV 468 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~a~~~~~~~ 468 (613)
.|++.+.+++... +-|...|+.-.-+|.+.|.+..|..-.+..++. .|+.... ...+--..++|++|.+-...-
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988864 446778888888899999999998887777763 4554321 111111123566666554443
Q ss_pred hccc
Q 007193 469 LSFN 472 (613)
Q Consensus 469 ~~~~ 472 (613)
...+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 3333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00019 Score=65.42 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=128.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHH-HHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~~ 107 (613)
+..+||+..++..|++++..-.++. |.+..-.+.++..+-...++..|-..++++. .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 4457899999999999999888887 5555556666666677778999999998865 344333332 2355677888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 99999998887642 222222222222 23567888888888887642 24444455445556889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
+...+-+--.....||.-+ +..+.++.+.|++...++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 9887754344456777555 455678899999988887764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-05 Score=82.96 Aligned_cols=230 Identities=12% Similarity=0.037 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
+-+...|-.-|.-....++.++|.+++++.... ..+. --...|.++++.-...|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 334567877888888889999999999888753 1111 113467777877777788888899999888753 2246
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (613)
+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788899999999999999999999987632 36678888899999998889999999888765211 2355566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (613)
.+.|+.+.++.+|+...... +.-...|+..|+.-.++|..+.+..+|++....++.|-. ..|.-.|.--...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 345678999999999999999999999999988877743 445555554445555443
Q ss_pred H
Q 007193 428 G 428 (613)
Q Consensus 428 a 428 (613)
+
T Consensus 1690 v 1690 (1710)
T KOG1070|consen 1690 V 1690 (1710)
T ss_pred H
Confidence 3
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0011 Score=68.80 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=87.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHcCCChHHHHHH
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~ 114 (613)
++.|.+++|..++.+..+-+ ++-+++.+.|.+++|+++-+.-..-. ..||..-..-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47888888988888887755 34445666777888877655322111 12344344444455666666655
Q ss_pred HHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 115 LRLVQ----------EAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 115 ~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
|++.. ... -..|...|.-....+-..|+.+.|+.+|..... |-++++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 54331 110 012333333344444455666777666665542 44455555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
|+.++|-++-++-- |......|.+.|-..|++.+|..+|.+.
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55555555544322 3344444555555555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00015 Score=70.24 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=133.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+..-..+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33344556677888888888887654 334456665555666666 5678888888877664 44556677665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---CCh
Q 007193 176 GQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV 250 (613)
Q Consensus 176 g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~---g~~ 250 (613)
|+. ++++.+++++.+.. +-|..+|+....++...|+++++++.++++.+.. +.|..+|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccc
Confidence 553 56777777777653 4466777777777777788888888888877642 34555666555444443 222
Q ss_pred ----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 251 ----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 251 ----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+++.....++.... +.+..+|+-+...+... +...+|.+.+.+....++. +...+..|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555666554 55667777777777663 3345577777776654433 55666667766664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00031 Score=74.24 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 114 (613)
..+...|...|-+..+.+ +.-...+..++.+|....+...|.+-|++.. ..+...+....+.|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445777888887777776 4455566778888888778888999988754 45666777888888888888888777
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00056 Score=63.71 Aligned_cols=359 Identities=12% Similarity=0.070 Sum_probs=241.1
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHH--
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM-- 99 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-- 99 (613)
|-++..-...-+.|+-+|++..|+.-|....+-+ |.+......-...|...|...-|+.-|..+..--+..+.+-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 4455556666778889999999999999999877 666555444455666667666677666665432222222222
Q ss_pred -HHHHcCCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 007193 100 -SVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 100 -~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (613)
..+.+.|.++.|..=|+.+..+..... ... ....+..+.-.|+...|++....+++.. +.|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 458899999999999999987742111 111 1223344556789999999999998875 568888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH----
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---- 240 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l---- 240 (613)
|..-..+|...|++..|+.-++...+.. .-++.++--+-..+...|+.+.++...++..+ +.||...+-..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHHHHH
Confidence 9999999999999999988777765542 33566666777888899999999998888875 46775432211
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007193 241 ---------MKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (613)
Q Consensus 241 ---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 308 (613)
+......+++.++.+-.+...+.+..... ..+..+-.++...+++.+|++...+.++.... |+.++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHH
Confidence 12233456677777777776665422122 23556677888889999999999999876432 477777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (613)
--..+|.-...++.|+.-|+...+.+ +.+... +.| .+.|.++..+.. +.|. |- |-+--++-
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~---------reG-le~Akrlkkqs~----kRDY--YK--ILGVkRnA 406 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN-ESNTRA---------REG-LERAKRLKKQSG----KRDY--YK--ILGVKRNA 406 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHH---------HHH-HHHHHHHHHHhc----cchH--HH--Hhhhcccc
Confidence 77888888889999999999888775 222221 111 345555544433 2332 22 22334455
Q ss_pred ChhHHHHHHHHHHhCCCCCCH
Q 007193 389 QLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~ 409 (613)
.-.+..+.+++|... ..||.
T Consensus 407 sKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred cHHHHHHHHHHHHHh-cCCcc
Confidence 566777778887664 56764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=81.51 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.-..+...+.+.|-...|..+|+++. .|.-.|-+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667777777788887777654 3666777777788878887777777764 677777777777776
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
...-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 666677777777664321 11111112233677777877777666654 44556777777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
.+.|.......+. +...|+.+-.+|.+.++-.+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++..
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888777765332 45678888888888888888888888777776 44556666666667777888888777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.5e-05 Score=80.59 Aligned_cols=231 Identities=11% Similarity=0.152 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLK---ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
+...|-..+.-..+.++.+.|+.++++.... ++. .-...|.++++.--.-|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567777777788888888888888877653 111 123467777777777777778888888887652 2244577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+..+-+.|..++.+....- +-..-.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 8888888888888888888888765 23456788888888888888888888888877631 101123344455566678
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~ 324 (613)
.|+.+.++.+|+...... +--...|+..|+.-.++|+.+.+..+|++....++.|-. +.|...+..=-..|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888877654 444578888899888899999999999998888776643 45666666555556654444
Q ss_pred HH
Q 007193 325 EI 326 (613)
Q Consensus 325 ~~ 326 (613)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=78.76 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=142.5
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
+.+.|++.+|.-.|+....+. +.+...|..|.......++-..|+..+.+..+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456777777777777776542 3446677777777777777777888887777776 556677777777788888777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHhcCC
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALI-----------DFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
.|++.++.-....++ |..+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 788777766543211 00000 01111112233344444443 33434677777777777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 888888888877643 33567788888888888888888888888777 56754 334445567788888888877665
Q ss_pred HHH
Q 007193 434 QAK 436 (613)
Q Consensus 434 ~m~ 436 (613)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=80.92 Aligned_cols=210 Identities=12% Similarity=0.047 Sum_probs=86.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
+...+...|-...|..+|++.. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+.....
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccCh
Confidence 3334444444444444444432 3334444444444444444444443332 34444444444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
.-+++|.++++....+ .-..+.......++++++.+.|+.-.+...- -..+|-..-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 4444444444433221 0011111112234444444444443332211 2233444444444444444444444
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..-..-. +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 4443322 2233444444444444444444444444444433 222333333334444444444444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00052 Score=70.04 Aligned_cols=286 Identities=15% Similarity=0.144 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007193 73 SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (613)
+.|+++.|+..|-+.. ..-..+.+......+.+|+.+++.+.... .-.--|..+.+.|+..|+++.|.++|.+
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh
Confidence 3455555555543321 11223345566778899999998888653 2234577888999999999999999976
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007193 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 232 (613)
.- .++--|.+|.+.|+|+.|.++-++.. |.......|.+-..-+-+.|++.+|.+++-.+. .|
T Consensus 791 ~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p 853 (1636)
T KOG3616|consen 791 AD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EP 853 (1636)
T ss_pred cc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------Cc
Confidence 43 35677899999999999999877765 334455566666666778899999988886543 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 312 (613)
+ ..|.+|-+.|..++..++.++-....+ ..+...+..-|-..|+...|...|-+..+ |.+.++
T Consensus 854 ~-----~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavn 916 (1636)
T KOG3616|consen 854 D-----KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVN 916 (1636)
T ss_pred h-----HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHH
Confidence 4 246678888888888777665432211 23455555666666777777666654332 334444
Q ss_pred HHHhcCCHHHHHHHHHH------------HHHCCCCcCH--H------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 313 FAGHAGKVEAAFEILQE------------AKNQGISVGI--I------SYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~------------~~~~~~~~~~--~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
.|-..+.+++|..+-+. |....+--+. . ....-++.-+..+.++-|.++-+-..+.. .|
T Consensus 917 myk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~ 995 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MG 995 (1636)
T ss_pred HhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cc
Confidence 44444555544443221 0000000000 0 11122333344444555555444333221 22
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+ ...+...+-..|++++|-+.+-+..+
T Consensus 996 ~v--hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 996 EV--HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred cc--hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 22 22344455678888888877776655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00051 Score=66.59 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=135.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 212 (613)
..+...++.++|+.+.+++++.. +-+..+|+..-..+...| .+++++..++++.+.. +.+..+|+..-..+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445677888999988888763 334556776666666667 5789999998888764 3445567655444555554
Q ss_pred -HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 007193 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (613)
Q Consensus 213 -~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (613)
.+++..+++.+.... +.|..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 256777887777542 4567788888888888888999999998888877 44556777665555443 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 286 -~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
++.++...++....+. |...|+-+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556666566655443 556666666666552 33455666666655543 3455566666666664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0025 Score=67.72 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=109.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 218 (613)
..+-+++|..+|++. ..+....+.||. .-+..+.|.+.-++.- ....|+.+..+-.+.|.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 334445555555443 223434444443 2234444544443332 23456667777667777776666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
-|-+. .|...|..+++...+.|.+++-.+.+....+..-.| .+-+.||-+|++.++..+..+++
T Consensus 1126 Syika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1126 SYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHh------
Confidence 65432 244466667777777777777777666655554333 23456666777776665543332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
..||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|..--++. .+..||-
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 125555566666666666666666665543 334555555555666665555543332 2344555
Q ss_pred HHHHHHHcCC
Q 007193 379 ALITALCDGD 388 (613)
Q Consensus 379 ~li~~~~~~g 388 (613)
.+-.+|...+
T Consensus 1254 ~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1254 EVCFACVDKE 1263 (1666)
T ss_pred HHHHHHhchh
Confidence 4444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-05 Score=74.83 Aligned_cols=252 Identities=14% Similarity=0.108 Sum_probs=139.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 216 (613)
+.+.|++.+|.-.|+..++.. +-+...|.-|......+++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345666666666666665553 3456666666666666666666666666666542 22344555555666666666666
Q ss_pred HHHHHHHhhCCCCC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 217 ~~~~~~m~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
++.++.-....+.. . ++...-.. ........+....++|-.+ ...+..+|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 66665553321000 0 00000000 1112222233334444333 33333456667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKS- 367 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 367 (613)
..|+..+...+. |...||.|...++...+..+|+..|.+.++.. |+ +.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 777777665443 56677777777777777777777777776653 32 23444455567777777777766654432
Q ss_pred --C------CCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 368 --I------KLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 368 --~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
. ...++...|.+|=.++.-.++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666666666666654433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0056 Score=65.20 Aligned_cols=235 Identities=14% Similarity=0.185 Sum_probs=112.0
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (613)
.++++-..+..+++..+-..+-+++++++.-.+ .++.+.-+..+++-...+.. -....++.+++..-|.. .+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa~---~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAP---DIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCch---hHHHH
Confidence 345556667777888888888888888876543 33344444433332222111 11122222222211110 11223
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
+..++-+++|+.+|+... .+....+.||. ..++++.|.+.-++.. ....|+.+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 344455566666665442 22333444443 2344455555444432 233466666666666666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (613)
.+-|-+.. |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .-+.|+-+|++.+++.+.++++.
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 55443322 4455556666666666666655555444332 11222 22345555666655554444321
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (613)
-|+..-...+.+-|...+.++.|.-+|
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 233333444444444555554444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0033 Score=62.43 Aligned_cols=394 Identities=12% Similarity=0.119 Sum_probs=222.9
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 007193 50 DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126 (613)
Q Consensus 50 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 126 (613)
+-.+.+ |.+...+..+++-+..+ ..+++...++++. +-.+..|..-|+.-...++++....+|.+....- .+
T Consensus 11 ~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334445 67777777777777666 7899999999875 3456789999999999999999999999888653 44
Q ss_pred HHHHHHHHHHHHHc-CChhH----HHHHHHH-HHHCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 007193 127 CKLYTTLITTCAKS-GKVDA----MFEVFHE-MVNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 127 ~~~~~~li~~~~~~-g~~~~----a~~~~~~-m~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 190 (613)
...|..-|+--.+. ++... ..+.|+- +.+.|+.+ +-..|+.-+.. |..+.+++...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 66676666544332 33332 2233333 23445433 23346655543 3445577788888888876
Q ss_pred CCCCCCHHHHH------HHHHHH-------HccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHH
Q 007193 191 KNVKPDRVVFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMK 242 (613)
Q Consensus 191 ~g~~p~~~~~~------~li~~~-------~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------------~~~ll~ 242 (613)
.-+.-=...|+ .=|+-. -+...+..|.+++++...-..|+..+..+ |..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42211111222 111111 12234556666666654322232221111 333333
Q ss_pred HHHhcCChH---------HHHHHHHH-HHhcCCCCCHHHHHHHHH-------HHHhcCC-------HHHHHHHHHHHHHC
Q 007193 243 ACANAGQVD---------RAREVYKM-IHKYNIKGTPEVYTIAIN-------CCSQTGD-------WEFACSVYDDMTKK 298 (613)
Q Consensus 243 ~~~~~g~~~---------~A~~~~~~-~~~~~~~~~~~~~~~li~-------~~~~~g~-------~~~a~~~~~~m~~~ 298 (613)
. -+.+-+. ...-++++ +.-.+..| .+|.---. .+...|+ -+++..+++.....
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1 1111111 11111221 12222222 22221111 1222222 34555555554432
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 007193 299 GVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (613)
-..-+..+|..+...--.. ...+....++..+...-...-..+|..+++.-.+..-++.|+.+|.+..+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2222333333333211111 1245555666666554323334577888888888888999999999999877766 77
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 452 (613)
..+++++.-|| .++..-|.++|+.=.+. ..-+..-....++-+.+.++-..++.+|++....++.|| ..+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 88888888877 46778899999874442 223334445667777888998999999999998766665 356777775
Q ss_pred H
Q 007193 453 M 453 (613)
Q Consensus 453 ~ 453 (613)
-
T Consensus 481 y 481 (656)
T KOG1914|consen 481 Y 481 (656)
T ss_pred H
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.6e-05 Score=70.89 Aligned_cols=186 Identities=11% Similarity=0.000 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H--
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V-- 162 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~-- 162 (613)
......+..+...+.+.|+++.|...|+.+.... +.+. .++..+...+.+.|++++|...++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677777888889999999999999887753 2222 466778888889999999999999988753 32 2
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007193 163 -HTYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 163 -~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 232 (613)
.++..+...+.+. |+.+.|.+.|+.+... .|+. ..+..+..... . .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH--------
Confidence 1344455555544 6788888888888765 3443 22222211100 0 00000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+....
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0112455678899999999999998877531 2345788899999999999999999988887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00053 Score=70.93 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=143.9
Q ss_pred HHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHHc
Q 007193 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-G--------LKADCKLYTTLITTCAKS 140 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~~~~~~~~~li~~~~~~ 140 (613)
++..-|+.+.|++-.+.+. +...|..|.+.|.+..+++-|.-.+..|... | -.|+ .+-....-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3556688888887776664 4567999999999988888887777666421 1 1122 2222333344578
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
|.+++|..+|.+-++ |..|=..|-..|++++|+++-+.=-...+ ..||..-..-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 889999999988775 34455667778999999887654322211 234544555555567777777777
Q ss_pred HHHh----------hCCC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 221 AEMN----------AEVH-------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 221 ~~m~----------~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
++.. .+.. .-..|...|.-....+-..|+++.|+.+|....+ |.+++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 6531 1100 0012333444444555566777777777766543 455666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
+.++|-++-++- | |......+.+.|...|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777776665542 2 4555666777777777777777777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0039 Score=61.90 Aligned_cols=406 Identities=11% Similarity=0.135 Sum_probs=243.7
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 007193 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (613)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (613)
+-++.+|+.|+ +...+++++..++++...- |....++...+..-...++++...++|.+-. .-+...|..-|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34567888888 4569999999999998654 6666666666666667788999999998743 456778887776
Q ss_pred HHHc-CCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHHH---------HHcCChhHHHHHHHHHHHCCCCCCHHH
Q 007193 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 101 ~~~~-~~~~~~----A~~~~~~m~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (613)
--.+ .++... -.+.|+... +.|+.+- -..|+.-+..+ ....+++..+++|.++...-+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5433 233332 334444433 3454332 23455555433 344567778888888875422111122
Q ss_pred HHH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccC---
Q 007193 165 YGA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (613)
Q Consensus 165 ~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (613)
|+- =|+.. -+...+..|.++++++.. .|+..+..+ |-.+|.-=..++
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 221 11111 123456677888777753 343322222 433443221111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHH-HH----HHHHHHHhcCCh-------HHHHHHHHHHHhcCCCCCHHHHHH
Q 007193 212 ---AV--DRAFDVLAEMNAEVHPVDPDHIT-IG----ALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (613)
Q Consensus 212 ---~~--~~a~~~~~~m~~~~~~~~~~~~~-~~----~ll~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~ 274 (613)
.. ....-.+++...- .+..|+..- +. ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 133444221 11 112334445554 344445544433322222333433
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHH
Q 007193 275 AINCCS---QTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (613)
Q Consensus 275 li~~~~---~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (613)
+.+.-- +....+.....++++... ...| ..+|...+..-.+..-++.|..+|.+..+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332211 112355666667666653 2333 3567778888888888999999999999987776 788999999977
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (613)
| .++..-|.++|+-=... ..-+..--...++-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 7 56778999999854432 1233444567788888899999999999999988777754 789999999999999999
Q ss_pred HHHHHHHHHH
Q 007193 428 GLMLLSQAKE 437 (613)
Q Consensus 428 a~~~~~~m~~ 437 (613)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00011 Score=66.10 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
..+...|+-+....+....... .+.|.......+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3344444444444444332211 12333344445555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
.|..-|.+..+.- .-+....|.|.-.+.-.|+.+.|..++...... -..|..+-..+.......|+++.|+++-.
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555554431 122334444444455555555555555554432 12244444445555555555555555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00054 Score=62.54 Aligned_cols=318 Identities=12% Similarity=0.064 Sum_probs=156.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (613)
+.+.+..+.+..+++.|++++....++. +.+....+.|..+|....++..|-.-++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3344444455556666666666555543 334555555666666666666666666666543 333333321 123334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
+.+.+..|+++...|... |+...-..-+.+ ....+++..+..+.++...+ .+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHH
Confidence 556666666666666432 222211111111 22345555555555554321 22233333333445566666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 007193 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEA 330 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~ 330 (613)
.|.+-|+...+.+--.....||.-+. ..+.|+++.|++...++.++|++-.+ -++.=+..= .....+..-..++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HP-ElgIGm~tegiDvrsvgNt~~lh~S- 238 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHP-ELGIGMTTEGIDVRSVGNTLVLHQS- 238 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCC-ccCccceeccCchhcccchHHHHHH-
Confidence 66666665554432222344544333 33455666666666666666554111 011000000 000000000000000
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007193 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
+ -+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- -.+++.+..+-+.-+.... +--.
T Consensus 239 ---a---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 239 ---A---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred ---H---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCCh
Confidence 0 0122333344566788999998888877532 1234666665443222 2345555555555555432 2356
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
.||..++-.||+..-++.|..++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8999999999999998888887754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=68.45 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
..+.+.|++.+|...+....+... +.....+..+...+.+.|++++|...++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555554421 11234555555556666666666655555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00092 Score=60.31 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
++.+++.......+......-...|.+.|++++|++...... +......=+..+.+..+++.|.+.+++|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444334443444444455667777777776665522 23333333344556666777777777776532
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 007193 193 VKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
+..|.+-|..++.+ .+.+.+|.-+|++|..+ .+|+..+.+-...++...|++++|..+++....+. ..+
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 44555555555543 24466777777777642 45666666666666677777777777777766665 334
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 007193 269 PEVYTIAINCCSQTGDWE-FACSVYDDMTKK 298 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~ 298 (613)
+.+...+|..-...|... -..+.+.++...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455544444444444443 333444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0002 Score=64.54 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (613)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444333 3444455555555555555555555555544432 22344444444432 34444 255555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++++..+. .| +...+..+..++...|++++|...|+++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555443 22 334444444555555555555555555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00028 Score=63.52 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~a~~ 325 (613)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|..
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443333 334444444444444444444444444444443322 33333333332 233333 244444
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
++++..+.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444443 22334444444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0003 Score=63.34 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=83.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
..+-..+...|+-+....+...... ..+.|.......+....+.|++..|...|.+..... ++|...|+.+.-+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 3344445555555555555444332 123333444445555556666666666666655554 555566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666655554322 33444555555555566666666665555543 2344555555555556666666655
Q ss_pred HHHH
Q 007193 361 LYEH 364 (613)
Q Consensus 361 ~~~~ 364 (613)
+-..
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.003 Score=62.69 Aligned_cols=356 Identities=12% Similarity=0.081 Sum_probs=194.5
Q ss_pred HhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 007193 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (613)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-..-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 45678999999999763 3668888888889999999999998766655544 555 66888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHH------HHHhC---CCCCCHHHHHHHHHHHHccC-----
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYG------IMRSK---NVKPDRVVFNALITACGQSG----- 211 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~------~m~~~---g~~p~~~~~~~li~~~~~~g----- 211 (613)
+.-|.+-++.. +.|...++-+..++ ..+.+. +.|. .+... ........|..++..+-+..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999887764 44566666677666 111111 1111 00000 00001112222222221110
Q ss_pred --CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCChH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcC
Q 007193 212 --AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 212 --~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g 283 (613)
+.+..++....+... ... .+...-..... ...+. ..........+ ....--..-...+.+...+..
T Consensus 165 ~l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred ccccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 011111111111000 000 00000000000 00000 00000000000 000000123556778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHH-------HHHHHHHhcCCHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-------SLMGACSNAKNWQ 356 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~ 356 (613)
+++.|.+.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+ .+..+|.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 9999999999888775 35555666677888888887777666666555421 112222 2334677788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
.|...|.+.......|+.. .+....+++++......- +.|.... ...=...+.+.|++..|...+.++
T Consensus 316 ~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999998876543333322 233445566665555443 3454322 222256788999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 007193 436 KEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~ 454 (613)
++.. +-|...|+-.--+|
T Consensus 385 Ikr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhcC-CchhHHHHHHHHHH
Confidence 9864 33444554443333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0049 Score=60.70 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=163.6
Q ss_pred chhhhHHHHHHHHhcC-CHHHHHHHHHHHHH---cCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC------CCCH
Q 007193 24 DVSEQLHSYNRLIRQG-RISECIDLLEDMER---KGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g-~~~~A~~l~~~m~~---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (613)
..+.+..-.+.|.+.| +.....+.|+++.. .+- +|.-..+|- .-..++.++...-++++ .|+.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 3456677778889988 55566788888874 222 222111111 12344666666666665 3455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+...+.+......-..+..++....+. .-...-|..-+ .+...|++++|+..++.+...- +-|...+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55555665544433333333333322221 11233344444 3457899999999999988762 44566667777889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
.+.++..+|.+.++++... .|+ ....-.+..++.+.|+..+|..+++..... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999887 566 555667788999999999999999988764 4667889999999999999988
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
++..-.. .+|...|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 7765443 4566778999999988888765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00091 Score=72.51 Aligned_cols=239 Identities=8% Similarity=0.031 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456778888999998999999999998876665 343 33333333366666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
++.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++.+-. +.|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 333333344443344444444443 2244567778888888888888888888887642 45677888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
++++|.+++.+.... |...+++..+.+++.++....+. +...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 888888887776654 45556777777777777665332 222222221
Q ss_pred HHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 111223344445555666666666666666666543 234444555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=62.75 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666543 4455566666666666666666666666666543 3455566666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007193 175 AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (613)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0095 Score=58.75 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=87.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
.-.+...|++++|+..+..+...-+. |...+....+.+...++.++|.+.++.+.... +......-.+..+|.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 33445566777777777776655322 44455555666677777777777777766653 22245555666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
.+|..+++...... +-|+..|..|..+|...|+..+|....-++ +...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHH
Confidence 77777766665443 445667777777777777766665544332 34566777777766666
Q ss_pred HH
Q 007193 436 KE 437 (613)
Q Consensus 436 ~~ 437 (613)
.+
T Consensus 452 ~~ 453 (484)
T COG4783 452 SQ 453 (484)
T ss_pred HH
Confidence 54
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0017 Score=70.40 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=96.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
.+.+...+++++|.++.++..+.. |.....+...+-++.+.++.++|..+ .++.......++...
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~v 102 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccchhHH
Confidence 334448899999999999777765 55555554444455555554444322 444555555556555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
..+...|... .-+...+-.+..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+...|+.. ++++|..++.+....
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 5555555553 3345577778888888888888888888888876 55788888888888888 888888888777643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00017 Score=61.30 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
...+...|++++|...|....... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444544444444443 3344444444444444555555555554444432 22344444444444445555
Q ss_pred hHHHHHHHHHHh
Q 007193 391 PKTMEVLSDMKS 402 (613)
Q Consensus 391 ~~A~~l~~~m~~ 402 (613)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00077 Score=72.24 Aligned_cols=235 Identities=10% Similarity=0.099 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (613)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-....... ...+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 344444444556666776665 566666553 222233333333333333333222 345678888889
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998863 555 5566678888999999999999999999886 677888899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+...-|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985543 47788888889999999999999999988763 34445555544 23344455666
Q ss_pred HHHhCC----CCCCHHHHHHHHHHHHc
Q 007193 364 HMKSIK----LKPTVSTMNALITALCD 386 (613)
Q Consensus 364 ~m~~~~----~~~~~~~~~~li~~~~~ 386 (613)
++.-.+ ....+.+...+|.-|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhh
Confidence 654332 22233445555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-06 Score=51.24 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0019 Score=69.29 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
.+.+...+-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34567778888888888999999999999888875 556677888888889999999999999988887654 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
+..++.+.|++++|..+|+++...+ +.+..++..+...+-+.|+.++|...|+...+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7778888899999999999988743 4557788888888888999999999998887643 344555555543 2
Q ss_pred hhHHHHHHHHHHh
Q 007193 390 LPKTMEVLSDMKS 402 (613)
Q Consensus 390 ~~~A~~l~~~m~~ 402 (613)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 3334455555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0028 Score=57.25 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.+..+.+-|.+.++.|.+-. +..|.+.|..++.+ .+.+..|.-+|++|.+. ..|+..+.+.+..++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 34444555555555554432 33344444443332 23455556666665542 245555555555566666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH-HHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~~~~~~m~~ 437 (613)
++|..++++..... .-++.|...++-.-...|... ...+...++..
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666655542 224444444444434444332 23334444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.3e-06 Score=50.67 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0003 Score=59.34 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...|...|++++|
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 333344444444443333322 2233333333334444444444444444333322 12233333333334444444444
Q ss_pred HHHHHHHH
Q 007193 394 MEVLSDMK 401 (613)
Q Consensus 394 ~~l~~~m~ 401 (613)
+..|+...
T Consensus 105 ~~~~~~al 112 (135)
T TIGR02552 105 LKALDLAI 112 (135)
T ss_pred HHHHHHHH
Confidence 44444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-05 Score=49.10 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (613)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0005 Score=57.97 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
...+...+...|++++|.+.|+.....+ +.+...|..+...+.+.|++++|...|++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2344444444455555555555555555444332 2233444444444555
Q ss_pred cCCHHHHHHHHHHHh
Q 007193 210 SGAVDRAFDVLAEMN 224 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~ 224 (613)
.|+.++|.+.|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=52.71 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 176 GQVAKAFGAYGIMRS---KN-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 176 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++.... +-+..+-..-...+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 344555555555542 12 3333332 2233344445555556666655555431 11111111111123344555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
++|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 55555555555554 4444444444444444455555555555554442 235555555555555555555555555555
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 007193 331 KNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKS 367 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 367 (613)
.-.. |.++..+..+.+.+.-.| +++.|.+.|.+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 233333334444333222 23344445544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.058 Score=57.29 Aligned_cols=223 Identities=12% Similarity=0.058 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHhCC--CCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
..+++..|++...+.. .||. .|..++++ +.+.|+.++|..+++.....+. .|..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 4567888888877654 3433 34444554 5688999999999888876653 388899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHH
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~ 218 (613)
+|+..... .|+......+..+|++.+++.+-.++--+|-+. ++-+...|-++++...+... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 678888888889999988876554444444332 34456677677776665422 234666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
.++.+..+. |-..+..-.-.-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 777777653 311222222223345667888999999994 444444444556667778889999999999999999998
Q ss_pred CCCC
Q 007193 298 KGVI 301 (613)
Q Consensus 298 ~g~~ 301 (613)
.|..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 8753
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=65.78 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.-.++++.+...++++.|..+|+++.+.. |++ ...++..+...++-.+|.+++.+..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456667777889999999999998764 554 3457777778888889999998888653 446667777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
+.++.+.|+.+.+++... .|+.. +|..|..+|.+.|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999876 56544 899999999999999999999888753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0003 Score=69.87 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
...+..++..+....+++.+..++...... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444444444444444444444444333 111122233344444444444444444444444444444444444444
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007193 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
+.+.+.|++..|.++..+|..++...+..|+...+.+|.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 444444444444444444444333344444444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.1 Score=56.19 Aligned_cols=184 Identities=9% Similarity=0.037 Sum_probs=116.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (613)
+...|...|-+..+.. .--...|..|...|+...+...|.+.|++..+.. ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 1224567788888887778888888888887653 3355667777888888888888888743
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 222 ~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
...+.. ....-...|-...-.|...++...|..-|+.....+ +.|...|..+..+|..+|++..|.++|.+.....
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332210 000001112223334566777888888888777765 5667788888888888888888888888776653
Q ss_pred CCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 007193 302 PDEVFLSA--LIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 302 p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
|+. +|.. ....-+..|.+.+|...+.....
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 322 2221 12234567888888887777654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00074 Score=67.16 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
.+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455666666666666666777777766665542222122234457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555556665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.6e-05 Score=45.65 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
+|+.||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0019 Score=64.08 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=48.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
|+..+...++++.|..+|+++.+.+ |+ ....++..+...++-.+|.+++++..+.... +...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3334444444444444444444433 11 2223344444444444444444444433221 23333333333444444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
.+.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444332 223334444444444444444444444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.3e-05 Score=45.35 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666665555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0042 Score=52.97 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
..+...|++++|...|+........|+. .....|...+...|++++|+..++..... ......+....+.|.+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHC
Confidence 3444445555555555555444311111 12222334444455555555555442211 12233334444555555
Q ss_pred CChHHHHHHHH
Q 007193 248 GQVDRAREVYK 258 (613)
Q Consensus 248 g~~~~A~~~~~ 258 (613)
|+.++|...|+
T Consensus 132 g~~~~A~~~y~ 142 (145)
T PF09976_consen 132 GDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHH
Confidence 55555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0031 Score=53.82 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=6.5
Q ss_pred HhcCChHHHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIH 261 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~ 261 (613)
...|++++|...|+.+.
T Consensus 59 ~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 59 YEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 33333333333333333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00079 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAK 139 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~ 139 (613)
|..|...+++.....+|+.+++.|+ .|++.+|+.++...++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555555555 4555555555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00085 Score=52.14 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (613)
|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999999 899999999999888753 35678999999999999999999
Q ss_pred HHHHHHHHHc
Q 007193 200 FNALITACGQ 209 (613)
Q Consensus 200 ~~~li~~~~~ 209 (613)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.16 Score=54.05 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCChh---HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 377 MNALITALCDGDQLP---KTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 377 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
-+.|+..+.+.++.. +|+-+++.-... .| |..+-..+|..|+-.|-+..|...++.+--..+.-|..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 355666777766654 344444443332 23 44444566677777777777777777665444554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.059 Score=48.70 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 007193 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAK 180 (613)
Q Consensus 107 ~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 180 (613)
+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+...- |... +-..-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 34444454444432 12 233332 23344444455555666665555554431 2211 11111111223455555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
|.++++.+.+.. +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 666655555543 334444433333333334444444444444432 3445555555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 007193 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 298 (613)
.-.. |.++..+..+...+.-.| +.+.+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4432 233333333333332222 233444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0041 Score=50.79 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=6.9
Q ss_pred HHHHccCCHHHHHHHHHH
Q 007193 205 TACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~ 222 (613)
.++.+.|+++.|.+.|+.
T Consensus 47 ~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=49.56 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444455555555555544432 2223344444444445555555555555444432 2223344444444555555
Q ss_pred HHHHHHHHHHHH
Q 007193 178 VAKAFGAYGIMR 189 (613)
Q Consensus 178 ~~~A~~~~~~m~ 189 (613)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.003 Score=53.10 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=68.1
Q ss_pred hhHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHH
Q 007193 27 EQLHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~-l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~ 102 (613)
..++.+.. |...|++++|..+|+-+...+ |++..++..++.++...|++.+|+..|... .+.|+..+-.+...+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44444433 447888888888888888877 778778777888888888888888888753 345667777777777
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 007193 103 ASSKDSEGAFQVLRLVQEA 121 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~ 121 (613)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7888888888877766654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0043 Score=54.70 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 231 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
..|..+|..+++.|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3456666666666653 35666677777777888887788888887776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0042 Score=47.87 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=5.1
Q ss_pred HHhcCCHHHHHHHH
Q 007193 349 CSNAKNWQKALELY 362 (613)
Q Consensus 349 ~~~~g~~~~A~~~~ 362 (613)
+...|+.++|...+
T Consensus 78 ~~~~~~~~~a~~~~ 91 (100)
T cd00189 78 YYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHhHHHHHHHH
Confidence 33333333333333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0084 Score=48.93 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINC 278 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~ 278 (613)
..+...+.+.|++++|.+.|..+.....+-......+..+...+.+.|+++.|...|+.+...... ....++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344444555555555555555554321110111223334555555555555565555555443211 113344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007193 279 CSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~ 298 (613)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0029 Score=55.81 Aligned_cols=100 Identities=11% Similarity=0.193 Sum_probs=55.3
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 338 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 338 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 45555555555543 35555555666677777777777777777766654 2211 011111111
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
. -.-.+.+-|++++++|...|+-||..++..|++.+++
T Consensus 113 ----~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 113 ----M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred ----c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0 1122344566666777666777777777777666665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.12 Score=53.35 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCChhHHH
Q 007193 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKA--------DCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~~--------~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+++|.++.+. +|.+..|..+.......-.++.|...|-+... .|++. +...-.+=+. +--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 4555555544 56778898888777777777777777755432 12211 0001111122 2348899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
++|-+|.+++ .-|..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.+..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 9998886542 3456677778887777766542110 0011134677777777777777777777765321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007193 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 306 (613)
....+.++.+..++++-+.+-..++ .+....-.|.+++...|.-++|.+.|-+... |
T Consensus 825 ----------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p---- 881 (1189)
T KOG2041|consen 825 ----------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P---- 881 (1189)
T ss_pred ----------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c----
Confidence 1123444555555544444333332 2234455566666666666666665543211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----C
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKS----I 368 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~----~ 368 (613)
...+..|...+++.+|.++-+...- |.+.+ ...-|..+.+.|+.-.|-+++.+|.+ .
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 1233445555555555554433210 00110 11234556677776666666666643 2
Q ss_pred CCCCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCCCHHHH--HHHHHHHhhcCC
Q 007193 369 KLKPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCPNTITY--SILLVACERKDD 424 (613)
Q Consensus 369 ~~~~~~~----~~~~-li~~~----------~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~--~~ll~a~~~~g~ 424 (613)
+.++-.. ...+ |+.-+ -++|..++|..+++.-... +..--...| ..+..--...|.
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhch
Confidence 2222111 1111 11111 1356777777665543211 111122333 334444455788
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 007193 425 VEVGLMLLSQAKE-DGVIPNLVMFKCII 451 (613)
Q Consensus 425 ~~~a~~~~~~m~~-~g~~p~~~~~~~li 451 (613)
++.|.+.--.+.+ ..+-|...+|+.+-
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 8888776555554 35667777776553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0081 Score=57.54 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (613)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 45555555555555555555555555332 1112222222222 22234444455555555542 2344455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.+.++.+.|+.+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555556666666666555443 2221 236666666666666666666666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0063 Score=58.27 Aligned_cols=130 Identities=14% Similarity=0.210 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 276 (613)
.+|..+++..-+.+..+.|.++|.+.... ..... .+|...... |...++.+.|.++|+...+. ++.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 46777888888888888888888888753 22233 344443333 33356667788888888776 466778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 277 NCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
+.+.+.++.+.|..+|++.... + |.. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888765 2 333 47888888878888888888888888775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=59.12 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
..|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444433 2234444444444444555555555554444432 1233444444444445555555555
Q ss_pred HHHHHHh
Q 007193 396 VLSDMKS 402 (613)
Q Consensus 396 l~~~m~~ 402 (613)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=48.25 Aligned_cols=177 Identities=8% Similarity=-0.034 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
....+...|++++|.+.|+.+.... +.+.... -.++.++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344556777778887777776653 2223322 34566677778888888888777765443222333333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007193 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (613)
Q Consensus 317 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (613)
.+ + ...|...|+.+++ -|-...-..+|...+..+... . ...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---l-a~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---L-AKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---H-HHH
Confidence 10 1 1233344444433 333334445555544444320 0 111
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
--.+..-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114556688888898898888888874 233345566777888999999999888776554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=58.33 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
.+...|+++.|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3455566666666666666666666666666553 3345556666666666666666
Q ss_pred HHHHHHHHHhC
Q 007193 181 AFGAYGIMRSK 191 (613)
Q Consensus 181 A~~~~~~m~~~ 191 (613)
|+..|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=46.94 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHH
Q 007193 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (613)
|++.|++++|+.+|+++.... |.+..+...++.++...|++++|.++++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888999999999988877 6677777778888888888888888888775 3443344433
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.028 Score=49.49 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33334444444444444444444433221111 1233444444444444444444444444432 12233333334444
Q ss_pred HhcCC
Q 007193 350 SNAKN 354 (613)
Q Consensus 350 ~~~g~ 354 (613)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.036 Score=57.74 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...|.++.-.....|++++|...+++..+. .|+...|..+...+...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444455555555555555553 34555555555555555555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.021 Score=48.14 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
..-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33344444556666666666666665543 3344455556666666666666666666666554 335555666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 007193 174 KAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~ 190 (613)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=47.98 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4555677777777777777777653 112233455567777777888777777665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.26 Score=44.89 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH---
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 346 (613)
.+.+.++..+.-.|.+.-...++++..+.....+....+.+.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35667777777888888888888888887766678888888888888999999999998877654344444444433
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 347 --~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
..|.-..++-.|...|.++...+ ..|+...|.-.-+..-.|+..+|++.++.|... .|...+-.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34555677888888888777654 345555554444444568888899988888874 56555544433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=49.69 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=6.6
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007193 346 MGACSNAKNWQKALELY 362 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (613)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.037 Score=48.73 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777778888899999988888876532222 3577788888888899999998888887753 3345666667
Q ss_pred HHHHHhcCCHHHHHH
Q 007193 169 IDGCAKAGQVAKAFG 183 (613)
Q Consensus 169 i~~~~~~g~~~~A~~ 183 (613)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.03 Score=49.12 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
..|..+...+...|++++|...|+........| ...++..+...+...|++++|...+....+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555555556666666666666665442222 12345555566666666666666666655442 223334444444
Q ss_pred HHH
Q 007193 348 ACS 350 (613)
Q Consensus 348 ~~~ 350 (613)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.65 Score=48.24 Aligned_cols=315 Identities=11% Similarity=0.049 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCChhHHHHH
Q 007193 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
.|.+++|.++|-.+...|. .|..+.+.|++-...++++.- |-.. -...|+.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999988876654 345666777777776665421 1111 145678888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 007193 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (613)
|..-. +. ...+.++.+..++++-..+-+.+. -|....-.+..++.+.|.-++|.+.|-+..
T Consensus 819 Y~~~~------~~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----- 879 (1189)
T KOG2041|consen 819 YSYCG------DT---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----- 879 (1189)
T ss_pred HHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc-----
Confidence 76543 11 234556666666665555554443 244555667778888888888877775432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007193 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----------VYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~-- 297 (613)
.|. +.+..|...+++.+|.++-+...-..+..-.. -.---|..+.+.|++-+|-+++.+|.+
T Consensus 880 -~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 880 -LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred -CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 121 23455666777777776654332111100000 011124456666777777777777754
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007193 298 --KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (613)
Q Consensus 298 --~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 375 (613)
++.+|-..--.-++.+.. ..+..++.+-.+....+|...+... +...|-..++.++.+..-+ .....
T Consensus 954 ~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAy 1022 (1189)
T KOG2041|consen 954 QEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAY 1022 (1189)
T ss_pred hhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHH
Confidence 233321111111111111 1223333333333344443322221 1122333333333332221 12233
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
.|..|..-....|..+.|++.--.+.+ ..+-|-...|+.+.-+.+....+...-+.|
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 444455555667888888876544443 336677788887766555544444444434
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.004 Score=47.28 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~ 115 (613)
+|+++.|+.+|+++.+......+..+...++..+.+.|++++|..++++.. +.+....-.+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 577778888888777765211133333335556666666666666665521 122233333455566666666666665
Q ss_pred HH
Q 007193 116 RL 117 (613)
Q Consensus 116 ~~ 117 (613)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.021 Score=50.15 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|..+...+...|++++|...|.+.............++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444455555444444322100000112344444444445555555555544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.078 Score=55.33 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=103.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007193 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 329 (613)
...+.+...|...+.+..... ....|..+|++..+..+. ....+..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344677889999888865432 367899999999987543 3455555544443321 12333344443
Q ss_pred HHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 330 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
.... ..+.+...+..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 234456777777777777899999999999998865 7888999999999999999999999999877 4677
Q ss_pred HHHHH
Q 007193 409 TITYS 413 (613)
Q Consensus 409 ~~t~~ 413 (613)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0052 Score=44.35 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
.|++++|..+|+.+.... +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22333344444444444444444444444443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.084 Score=42.80 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233334444455555555555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.016 Score=53.66 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007193 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
+.+++.+|+..|.+.. +.|.+.|..-..+|.+.|.++.|.+-.+..+... +.-..+|..|-.+|...|++++|.+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3456666666666533 4456666666666777777777766666655443 22345667777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q 007193 150 FHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~ 171 (613)
|.+.++. .|+-.+|-.=+..
T Consensus 172 ykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 172 YKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHhhhcc--CCCcHHHHHHHHH
Confidence 7666654 4555555444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.12 Score=49.66 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHcCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSK 106 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~ 106 (613)
.....+.+-..|++++|...|.+...-..-..+. ....+.+.+|...+.+.... -+..|...+..|...|
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcC
Confidence 3344444556777777777776654321000000 11122344444555444111 1224455556666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCCHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAMFEVFHEMVN----AGIEP--NVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~~~g~~~ 179 (613)
++..|-.++.. +...|... |++++|.+.|.+..+ .| .+ -..++..+...+.+.|+++
T Consensus 109 ~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 109 RFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp -HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred cHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 66666554443 34455555 778888887777543 22 11 1234566777888888999
Q ss_pred HHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhc--CC
Q 007193 180 KAFGAYGIMRSKNVK-----PDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANA--GQ 249 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~--g~ 249 (613)
+|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.....+++..+ ......|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999998887654221 1221 22223335566788888888888877543334333 33445556655432 23
Q ss_pred hHHHHHHHHHHH
Q 007193 250 VDRAREVYKMIH 261 (613)
Q Consensus 250 ~~~A~~~~~~~~ 261 (613)
++.+..-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 445555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.078 Score=43.01 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
.++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666666665555554333 22333444555555666666665555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.59 Score=45.58 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=147.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
+.+..++..|+..+....+.. +-+..-|..-...+...|++++|.--.+.-.+.. +-......-.-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344455666666666666654 3334445444555555666666654443333221 00111122222233333333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHH
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM-KACANAGQVDRAREVYKMI 260 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~ 260 (613)
.+.++ |...+ ....++..++..... +.-+|...++..+- ..+...|+.++|..+--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 33333 11111 111222222222221 11124444444432 4556678888888777666
Q ss_pred HhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007193 261 HKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (613)
.+.+- . ..+...+++ +.-.++.+.+...|.+.+..+ |+...-. ......+.+..+...|
T Consensus 196 lkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~~~~~~k~le~~k~~g---- 256 (486)
T KOG0550|consen 196 LKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK----------SASMMPKKLEVKKERG---- 256 (486)
T ss_pred Hhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH----------hHhhhHHHHHHHHhhh----
Confidence 66542 1 233333433 334577788888888877664 4433211 1111222233333333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-
Q 007193 339 IISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI- 414 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~- 414 (613)
+-..+.|++..|.+.+.+.... +.+|+...|........+.|+.++|+.--++... .|..-.-.
T Consensus 257 --------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikal 324 (486)
T KOG0550|consen 257 --------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKAL 324 (486)
T ss_pred --------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHH
Confidence 2345788888888888877653 3455666677777777888999998888877664 33332222
Q ss_pred --HHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 415 --LLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 415 --ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
-..++.-.+++++|.+.++...+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 224455678888888888887764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.028 Score=52.14 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (613)
+.+++.+|+..|.+.++.. +-|.+.|..=..+|++.|.++.|++=.+.....+ |. ..+|..|-.+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455555555555555543 3344455555555555555555555555444321 22 345555555555556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 007193 395 EVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ 414 (613)
+.|++.++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 55555554 4555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.21 Score=48.00 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=54.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTK----KGVIPD--EVFLSALIDF 313 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~ 313 (613)
+..|...|++..|-+.+.. +...|-.. |++++|++.|.+..+ .| .+. ..++..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3445566666555544433 33344444 667777777666543 22 111 2344555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-----CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISV-----GII-SYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
+.+.|++++|.++|+++....... +.. .+...+-++...|+...|.+.|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777777666542211 111 122223344556667777777766654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=41.75 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555433 12344444555555555555555555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.083 Score=49.33 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
+-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455555555555555555555555555554442 33444444444433322 12345555555555442 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3444455555555555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.33 Score=49.81 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 007193 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (613)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (613)
+-+-+.-++++.++|-+|... ++...+.-.|.+.+|.++|++
T Consensus 616 ~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 333444455555666554433 233345556667777766654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=41.42 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+.|++++|.+.|+++.+.. +-+...+..+...+.+.|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444443332 113333333333444444444444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.19 Score=46.95 Aligned_cols=100 Identities=17% Similarity=0.072 Sum_probs=52.4
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC-CHHH
Q 007193 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP-NTIT 411 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~~~t 411 (613)
+-|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++.... ...++..+|+++... .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455566666666666666666666666555432 234444444444433221 234556666666553 34 3333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 412 YSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
...+..++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444445566666666666666666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=41.61 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 296 (613)
+|..+...+...|++++|...|++..+.+ +.+...|..+..+|.+.| ++++|++.++...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444555554444444443 333444444444444444 3444444444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.1 Score=43.48 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..+++++-..+-.. +-++.-|-.++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444556666777777766655442 36777788888888888888776654321 123567777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
+.|...+|..+...+. +..-+..|.++|.+.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888777766521 2445667777888877766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.64 Score=42.13 Aligned_cols=166 Identities=11% Similarity=0.065 Sum_probs=79.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007193 242 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 317 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 317 (613)
..+...|++++|.+.|+.+..... +-...+.-.++.++.+.|+++.|...+++..+.-+.....-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344556666666666666655421 1113344555666666666666666666665543221112222222222111
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 318 -----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 318 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
+...+|.. .+..++.-|-......+|...+..+.+. . ...--.+...|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHH
Confidence 11122222 3334444444445555555555444320 0 1111224566777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHH
Q 007193 387 GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVG 428 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 428 (613)
.|.+..|..-++.+.+. -|+. .....++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88888888888877764 3432 3445666777777776644
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=41.11 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (613)
+.+|..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.| ++++|++.|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 334445555555555555 4555555555544
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.1 Score=45.20 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
+.-+...|+..+|.++-.+.. .||...|-.-+.+++..+++++-+++-+.. -.+.-|.-++..|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccH
Confidence 333444455555544443332 244444555555555555554433332211 1133444555555555555
Q ss_pred HHHHHHHHHH
Q 007193 356 QKALELYEHM 365 (613)
Q Consensus 356 ~~A~~~~~~m 365 (613)
++|.+++.+.
T Consensus 761 ~EA~KYiprv 770 (829)
T KOG2280|consen 761 DEAKKYIPRV 770 (829)
T ss_pred HHHhhhhhcc
Confidence 5555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.86 Score=41.29 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhH
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPK 392 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 392 (613)
+...|.+.|.+..|..-++.+.+. -|+. ...-.|+.+|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 455566777777777777666653 2332 234455666666666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.091 Score=49.48 Aligned_cols=60 Identities=22% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+...|...|++++|...|+.+.+.. -+.....+..+...+...|+.++|..+|+.+.+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444444444444321 0111223333334444444555555555444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.11 Score=50.18 Aligned_cols=265 Identities=15% Similarity=0.069 Sum_probs=136.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHH--H--CCC-CCCHHHHHHHHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMV--N--AGI-EPNVHTYGALIDG 171 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~--~--~g~-~~~~~~~~~li~~ 171 (613)
-+++.|+......+|+..++.| ..|.. .|..|-++|.-.+++++|++.+..=+ . .|- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3778888888888888888877 33433 45566667777778888887654311 0 000 0011122223333
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhC
Q 007193 172 CAKAGQVAKAFGAYGIM----RSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAE 226 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m----~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~ 226 (613)
+--.|.+++|+-.-.+- .+.|-+ .....+..+...|...|+ ++.|.++|.+-.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554332211 111100 012233445555544432 23333443322110
Q ss_pred C--CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 007193 227 V--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIH----KYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK- 297 (613)
Q Consensus 227 ~--~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 297 (613)
. .+ --.--..|..|.+.|.-.|+++.|....+.-. +.|-. .....+..+.+++.-.|+++.|.+.++.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 00 00112234455555556677777776654322 11111 1124566777777777888888877765432
Q ss_pred ---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 298 ---KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 298 ---~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.|- .....+..+|...|.-..++.+|+.++.+-... ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112345556666776667777777777653221 112234567777777777777777776665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.15 Score=52.08 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (613)
.|-.+.+.+=+..|...|.+++|.++ ++.+... ..+..-++.-=.+|.+-.+ +-+...-+++++++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34444555566667788888877654 2222111 1123334555566766554 344555567788888
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH------------HHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMI 260 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~ 260 (613)
-.|+.... ...++-.|.+.+|-++|.+--.+ +..+.+|.....++.|.+++ ++-
T Consensus 631 e~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 631 ETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred CCchHHHH---HHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 77887643 34566678888888888764321 12334444444444444443 211
Q ss_pred Hh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 261 HK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 261 ~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m-~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
.+ +++... .+-...+...|+.++|..+.-+ | .+-+- ..+..+...+...+-+...+..|.++|..
T Consensus 697 A~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 697 ADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 11 111111 1223344455666666554321 1 11111 12334455555555566667777777776
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|-.. .++++.....+++.+|..+-+...+
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 6432 3566677778888888887776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=50.33 Aligned_cols=266 Identities=18% Similarity=0.075 Sum_probs=148.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~li~ 205 (613)
.-+|+.|+......+|+..++.|-+ |.. .|..|.++|.-.+++++|++....= ..+ |-+ -...+...|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3468999999999999999988733 433 4666777777788888888764321 110 100 01111222233
Q ss_pred HHHccCCHHHHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 007193 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (613)
.+--.|.+++|.-.-.+- .+-+..+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333344455544321111 0000000 112334445555554432 233444443211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+.|- -..-..|..|.+.|.-.|+++.|+...+.-. +-|-. .....++.+..++.-.|.++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0011356667777777888988887765432 22211 123467777788888888888888877643
Q ss_pred H----CC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
. .| -.....+..+|.+.|.-..++++|+.++.+-.. . ...-...++.+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 123455677788888888888888888765321 1 112234567778888888888888887776654
Q ss_pred h
Q 007193 402 S 402 (613)
Q Consensus 402 ~ 402 (613)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.046 Score=46.64 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV 199 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 199 (613)
...++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555666666666666655543 33555666666666666666666666655532 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.12 Score=42.27 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
..|+..+..+++.+|+..+++..|+++.+..... .+++-+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Confidence 4455555555555555555555555555555543 3355455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.39 Score=40.84 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
..++..+...|++++|..+...+....+. |...|..+|.+|...|+...|.+.|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444443322 4444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.14 Score=43.59 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=56.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHH
Q 007193 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
+.+.|++++|..+|.-+..-+ +++..+..-++.++...+++++|+..|... ...|+..+-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 347778888888887777766 566666666677777777777777777542 234444455556666777777777
Q ss_pred HHHHHHHHH
Q 007193 112 FQVLRLVQE 120 (613)
Q Consensus 112 ~~~~~~m~~ 120 (613)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=48.03 Aligned_cols=89 Identities=17% Similarity=0.087 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
.+.|++++|...|+.+... .|+. ..+-.+...|...|++++|...|..+......-+.....+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344455555555544443 2221 233334444445555555555555544321111111222333333444455
Q ss_pred ChHHHHHHHHHHHhc
Q 007193 249 QVDRAREVYKMIHKY 263 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~ 263 (613)
+.+.|..+|+.+.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.21 Score=41.01 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 007193 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEVYTIAINCC 279 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 279 (613)
++.|+..+..+++.+|+..|++..|.++.+.+.+ .+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456666666666666666666666666665533 24444455565555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.076 Score=38.78 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+.+++++|.++++.+...+ +.+...|......+.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444443332 2233333333334444444444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.085 Score=38.50 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
..|.+.++++.|.++++.+...+ +.++..+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56778889999999999988875 5577788888888899999999999999888763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=38.22 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHH
Q 007193 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIG 238 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~ 238 (613)
|++.---.|..+..+.|+..+|...|++...--+--|....-.+.++....++...|...++.+.+-.. +-.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 344444444555555555555555555554433333444444455555555555555555555433210 01122 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...+...|...+|+.-|+...+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 334445555555555555555444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.4 Score=38.14 Aligned_cols=129 Identities=11% Similarity=0.030 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (613)
.|+...-..|..+....|+..+|...|++...--+--|....-.+.++....++...|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666777777777777777776665555666666677777777777777777777665532 1222 33
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
-.+...|...|.+.+|..-|+..... -|+...-...-..+.+.|+..++..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 34556677777777777777777663 4555443334444556666655554433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=38.12 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHHHHHHHHH---HHHcCC
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS---VCASSK 106 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~---~~~~~~ 106 (613)
.|.+.++.++|+.-|.++.+.|.-............+..+.|+...|...|+++.. |-+.-=..-++ .+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45689999999999999999987555555555556667788889999999988642 22211111111 255677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.++......+-+-..+-+.-...-..|--+-.+.|++..|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777776666655443444455566666666778888888888777653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.16 Score=46.60 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=67.4
Q ss_pred HHHhCC--CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 83 FFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 83 ~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
.|..++ ..|-.+|-..+..+.. .+.++--...++.|.+-|+..|..+|+.|++.+-+-.-
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------- 122 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------- 122 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------
Confidence 344444 3455555555544432 23445455555666666666666666666655432211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMN 224 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 224 (613)
.|.. .+....-.|= .+-+=+++++++|...|+.||..+-..|++++++.+-. .+..++.-.|.
T Consensus 123 ---iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ---IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 1111111121 22345788889999899999988888888988887653 33444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.1 Score=45.84 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=100.2
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLE--DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~--~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (613)
..++.+..-|...+-+++++++..+.+ ++. .. +| ......++++..+.|..+.|+.+-. |+ ..-..
T Consensus 259 ~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll-~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFe 326 (443)
T PF04053_consen 259 YELDLSELEFKTAVLRGDFEEVLRMIAASNLL-PN-IP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFE 326 (443)
T ss_dssp EE--HHHHHHHHHHHTT-HHH-----HHHHTG-GG-----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHH
T ss_pred EEECHHHHHHHHHHHcCChhhhhhhhhhhhhc-cc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhH
Confidence 445667778888888899998776664 111 11 12 2335566777777888888876533 22 23344
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
...+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 56677788877766432 23566888888888888888888888776542 5666667777788777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
-.++.+.....| -+|..+.++.-.|+.++..+++.+.
T Consensus 392 L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 392 LSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777776666654 2555556666667777777776553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.3 Score=38.91 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (613)
...|++.+|..+|+...... +-+...--.+...|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34555555665555555432 22334444555556666666666666655543321111122122223333333333333
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC
Q 007193 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 283 (613)
.+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..+++.+.--|
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 22444444555556666666666555544433321 122344555555555555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=4.3 Score=39.86 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=132.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
|...+..++.+|+..+....+.. |.+..++..-+..+...+.+++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 45668888999999999888876 6666666555555555666666665443321 111111111122222222222
Q ss_pred HHHHHHH------------HH---HHc-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 110 GAFQVLR------------LV---QEA-GLKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 110 ~A~~~~~------------~m---~~~-g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
+|.+.++ .. ... .-+|...++..+ ...+.-.|+.++|.+.--...+.. ....+...+++.
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3322222 11 111 112333444333 234456677888877766666542 223344444443
Q ss_pred H--hcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHH
Q 007193 173 A--KAGQVAKAFGAYGIMRSKNVKPDRVVFNA-------------LITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (613)
Q Consensus 173 ~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~ 236 (613)
+ -.++.+.|..-|++.+.. .|+-..--. -.+-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3 356777888888877755 344322111 1122345677777777777765421 112233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
|........+.|+..+|+.--+...+.+- ..+...+ ..++...++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~---syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS---SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566677777777776666655431 1222222 23344456666776666665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=4.3 Score=39.54 Aligned_cols=296 Identities=17% Similarity=0.128 Sum_probs=127.4
Q ss_pred HHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 007193 130 YTTLITTCAK--SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--AKAGQVAKAFGAYGIMRSKNVKPDRVV--FNAL 203 (613)
Q Consensus 130 ~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l 203 (613)
|..|-.++.- .|+-..|.++-.+-.+. +..|....-.|+.+- .-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444332 34555555554443211 122333333333322 2346666666666666542 22211 1222
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPE--VYTIAINCCS 280 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~~li~~~~ 280 (613)
.-.--+.|+.+.|.+.-++.-..- +.-...+.+++...+..|+++.|+++.+.-....+ .++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 222334566666666555554321 11133455566666666666666666655433321 22211 1112222111
Q ss_pred h---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 281 Q---TGDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 281 ~---~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
. ..+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+.+....|+. . ++..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc-
Confidence 1 1223333333333322 2233221 112234555666666666666666665433332 2 12223444432
Q ss_pred HHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHH
Q 007193 357 KALELYEHMKSI-KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLS 433 (613)
Q Consensus 357 ~A~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~ 433 (613)
+..-+++.... .++| +..+-..+..+-...|++..|..--+...+ ..|....|..+.+.-. ..||-.++++.+.
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 11111111110 0122 344444555555556666555554444443 3455555555554433 3366666666666
Q ss_pred HHHHcCCCC
Q 007193 434 QAKEDGVIP 442 (613)
Q Consensus 434 ~m~~~g~~p 442 (613)
+..+..-+|
T Consensus 388 qav~APrdP 396 (531)
T COG3898 388 QAVKAPRDP 396 (531)
T ss_pred HHhcCCCCC
Confidence 665543333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.66 E-value=4.7 Score=39.29 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
+.+..+.-+...|+...|.++-.+. . .|+...|-..+.+++..++|++-.++... +. ++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 4555567778889988888876554 2 46778899999999999999987775432 22 2366899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (613)
+.|...+|..+... ..+..-+..|.++|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988876 2235678889999999999887544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.5 Score=44.86 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555556666655555432211 2223344556666655543322 24456666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666665532 13444445555566555555555555544 244444444445555555
Q ss_pred HHHHHH
Q 007193 289 CSVYDD 294 (613)
Q Consensus 289 ~~~~~~ 294 (613)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.59 E-value=7.7 Score=41.76 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHcCCChHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 110 (613)
.+.|++..-++-|+.+-..-.... .....++.-.+..+...|++++|...|-+... -++ ..+++-+....++.+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 344556666666666654332111 12344566666777788999999888866431 111 234555666666677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
--..++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 77778888888854 44455678899999988887766655543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.13 Score=38.20 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554321 011 11 2344555555666666666666665544
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.1 Score=35.93 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555666666777777777766665 355566777777776653 2333333331 1 1223344556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666654421 11222222223 5566666655531 24455655555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.53 E-value=5.4 Score=39.44 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.+++.+..-.|+.++|.+..++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3456666667777777777777777665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.32 Score=44.79 Aligned_cols=118 Identities=21% Similarity=0.297 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007193 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (613)
..|-.+|...+..+... +.++-....++.|.+.|++.|..+|+.|++.+=+-.- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 44666677666666543 5567777788889999999999999998887654322 121 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHK 262 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~ 262 (613)
.+....--|-+ +-+-+.+++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.+
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 22222222222 23457889999986 58999999999999999998864 344444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.12 Score=38.36 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+++.+...|...|++++|...|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666655421 10 111 3455566666666666766666666544
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.3 Score=35.37 Aligned_cols=89 Identities=9% Similarity=-0.046 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
--+...|++++|..+|.-+...++. +..-|..|..+|-..+.+++|...|......+ .-|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3345667777777777766655443 44445555556666677777777776655443 234444445556666777777
Q ss_pred HHHHHHHHHHh
Q 007193 357 KALELYEHMKS 367 (613)
Q Consensus 357 ~A~~~~~~m~~ 367 (613)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.07 E-value=7.1 Score=38.98 Aligned_cols=420 Identities=13% Similarity=0.142 Sum_probs=200.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHHHH---HHhCCCCCHHHHHHHHHH--HHcCCC
Q 007193 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSV--CASSKD 107 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~li~~--~~~~~~ 107 (613)
+++++.+|..+|.++..+--.. ....+.+.++.++-.. +.+.-... +++-.+ ...|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 7899999999998887653211 1133444555554432 23332222 222222 2334444444 456778
Q ss_pred hHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEA--GLK------------ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (613)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (613)
+.+|.+.+.....+ +.. +|-..=+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888887766554 211 23334466777888888888888888777643 3346788888866
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 007193 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (613)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~ 226 (613)
-++.+.= . ++-+.-...+|... .+.|....+..++.-..-. .+..--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 6655431 1 12222222333221 1233333333333322211 112222233332221
Q ss_pred CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 227 VHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 227 ~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
.-+.|+ ..+...+...+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+....+.
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 123444 2233344444443 3444444333332221110 1246777777777777777777776665443221
Q ss_pred C--------CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH---HHHHhcCC-HHHHHHHHHHHHhC
Q 007193 302 P--------DEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---GACSNAKN-WQKALELYEHMKSI 368 (613)
Q Consensus 302 p--------~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~ 368 (613)
. ...++-.++.. =...-+...-+.++.......+. ....-..|+ .-+.+.|. -++|.++++.+.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 1 11222222210 00011222333444444333211 111112222 22344444 66777777777653
Q ss_pred CCCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HhhcCCHHHHHHHHHHH
Q 007193 369 KLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVA--CERKDDVEVGLMLLSQA 435 (613)
Q Consensus 369 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a--~~~~g~~~~a~~~~~~m 435 (613)
. .-|..+-|.+. ..|.+ ...+.+-+++-+-..+.|+.|-. ..-+-+.+| +...|++.++.-.-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 23333333222 12222 22344444554555667777633 333444443 45678887776555555
Q ss_pred HHcCCCCCHHHHHHHHHHHH---hhHHHHHHhhhhh
Q 007193 436 KEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHV 468 (613)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~~ 468 (613)
.+ +.|++.+|.-+ .+|. ++|.+|.......
T Consensus 489 ~~--iaPS~~~~RLl-Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLL-GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHH-HHHHHHHhhHHHHHHHHHhC
Confidence 55 67777777643 3332 2677777766554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.9 Score=36.95 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----- 238 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~----- 238 (613)
+.+.++..+.-.|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|++..+... ..|..+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhccchhHHHHh
Confidence 34455555555666666666666666655455566666666666667777777666665543211 11222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.....|.-.+++..|...|+++...+ +.++..-|.-.-+..-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22223444455666666666666554 334444443333344456666666666666655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.3 Score=44.47 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=22.8
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (613)
..|.+.......-..|.+.|++++|+..|++..+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344445555555556667777777777777776665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.98 E-value=3.3 Score=34.80 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333333444444444444444433 2333444444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.6 Score=37.44 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+..+.. .........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhcC
Confidence 4456677777777777766542 22234445566777777777777777777654310 11112222334445555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 319 (613)
.+...+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..+++.+.-.|.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 5444444443331 335566666777777777777777776666543 333 44555566666655553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.83 E-value=7.5 Score=38.46 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|---+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667788888888888888888888875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=2 Score=43.12 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
...++.+..+|.+.|++++|...|++..+.+ +.+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555443 1122 23555555555555555555555555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.67 E-value=3.7 Score=42.65 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHc----cCCHH
Q 007193 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD-----RVVFNALITACGQ----SGAVD 214 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~ 214 (613)
-..-+|.-+... +|| ....+++...-.|+-+.+++.+.+..+.+ +.-. ...|+..+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344456555543 133 35667777777899999999888776542 2211 1234444444443 45688
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACS 290 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~ 290 (613)
.|.+++..+... -|+...|... .+.+...|++++|.+.|+...... . +.....+--+.-.+.-..+|++|.+
T Consensus 251 ~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 251 EAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 999999999875 4666555443 467788899999999999654321 1 1122344455666788899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007193 291 VYDDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (613)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (613)
.|..+.+..-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999886432 34444444333 3446767 888899888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.58 E-value=5.1 Score=41.60 Aligned_cols=163 Identities=13% Similarity=0.024 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE------VFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGII 340 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 340 (613)
....+++...-.|+-+.+++.+.+..+.+-.-.. ..|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3444555555555666666555554432111011 122333332222 34567788888888776 34444
Q ss_pred hHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 341 SYS-SLMGACSNAKNWQKALELYEHMKSIKL---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 341 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
.|. .-.+.+...|++++|.+.|+....... +.....+--+...+.-.+++++|.+.|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443 334556778888888888886543110 1123344456667778889999999999988753 34555555554
Q ss_pred HHH-hhcCCH-------HHHHHHHHHHH
Q 007193 417 VAC-ERKDDV-------EVGLMLLSQAK 436 (613)
Q Consensus 417 ~a~-~~~g~~-------~~a~~~~~~m~ 436 (613)
.+| ...|+. ++|.++|.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 443 346666 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.4 Score=33.61 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
....+......|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444455555566666666665555432 4555555556666666666666666666555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.9 Score=33.32 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
-.|..++..++..+..... +..-++-+|--....-+-+-..++++. -|--.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCc----------hhhcchHHHHH
Confidence 3466666666666665542 333344444333222222222222222 2211222 23455544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
.+-.+ ..+.......+..+.+.|+-+.--++..++.+. -.|++....-+..||.+.|+..++-+++.++-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44332 234555667778888899998888888887653 378888888999999999999999999999888875
Q ss_pred C
Q 007193 441 I 441 (613)
Q Consensus 441 ~ 441 (613)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.5 Score=42.84 Aligned_cols=133 Identities=18% Similarity=0.110 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007193 33 NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (613)
|.+.+.|++..|...|++.... ..++. ++..... ..-..+++.+.-.+.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------------ee~~~~~----~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------------EEQKKAE----ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCH------------------HHHHHHH----HHHHHHhhHHHHHHHhhhhH
Confidence 4567888899888888876542 11111 0000000 11234556666677888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQV-AKAFGAYG 186 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~-~~A~~~~~ 186 (613)
..|++.-...+..+ ++|+-..-.-..++...|+++.|+..|.++.+. .|+ -..-+.|+..--+.... +...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776 667777777778888888888888888888876 444 44444455544444443 34467777
Q ss_pred HHHh
Q 007193 187 IMRS 190 (613)
Q Consensus 187 ~m~~ 190 (613)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=9.3 Score=38.62 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhCC---CCC---HHHHHHHHHH-----HH----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007193 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSV-----CA----SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (613)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~-----~~----~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (613)
...+.|+.+|.+.. +-| ...|..+.-. +. ......+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35677787887755 323 3333322221 11 1234556777777777776 6677777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDRA 216 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a 216 (613)
.++++.|..+|++....+ +-...+|....-...-+|+.++|.+.+++..+. .|.. ...-..++.|+..+ ++.|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 788888888888877663 223445555555556678888888888886544 3332 22333344555544 5666
Q ss_pred HHHHHH
Q 007193 217 FDVLAE 222 (613)
Q Consensus 217 ~~~~~~ 222 (613)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666644
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.9 Score=39.74 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHhcCC
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQ 249 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~----~ll~~~~~~g~ 249 (613)
-.|++.+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..+|...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666667776654 3556666666666777777777666666666532 233432222 22333445667
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777777666666655 34444445555555666666666665444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=11 Score=36.98 Aligned_cols=286 Identities=15% Similarity=0.101 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHhC---CCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHH
Q 007193 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (613)
.|+-..|.++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45666777665543 23444445555543 45579999999999999852 2221 223344444577888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHc---cCCHHHHHHHH
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~li~~~~~---~g~~~~a~~~~ 220 (613)
...-+..-..- +.-...+.+.+...|..|+++.|+++.+.-+.. -+.++.. .-..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877765542 334667889999999999999999999887654 2344433 22234433221 23455666655
Q ss_pred HHHhhCCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 007193 221 AEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 298 (613)
.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....| .++...+ +.+.|+. ++.-+++..+.
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 55443 34553322 233477899999999999999998875444 4443322 3455543 33333333221
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHH
Q 007193 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVST 376 (613)
Q Consensus 299 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (613)
..+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+.... |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4556667778888889999888777766654 5778888888777654 59999999999888764 43344
Q ss_pred HH
Q 007193 377 MN 378 (613)
Q Consensus 377 ~~ 378 (613)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.63 E-value=10 Score=36.54 Aligned_cols=131 Identities=14% Similarity=0.261 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHhcCC-
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SGA----VDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (613)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...|..+|+.|++..+-+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776665543222222 222 456777888887753222 2344555555433 2222
Q ss_pred ---hHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 250 ---VDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
.+.++..|+.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244556666666655544322 22222222211111 33566666666666666555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.9 Score=34.04 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=47.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.....+.|++++|.+.|+.+..+-. +-...+.-.|+.+|.+.+++++|...+++.++.....-..-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567788888888887776521 1234455667777888888888888888877653221223455555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.8 Score=41.10 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHhcCChHHHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKY-----NIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 308 (613)
.|.+.|++..|..-|++.... ..+ .-..+++.+.-+|.+.+++..|++.-...+..+.. |.-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHH
Confidence 455666666666666554321 000 01234566666777777777777777776665432 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-ALELYEHMK 366 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 366 (613)
.=..+|...|+++.|+..|+.+.+.. |.|-.+-+.|+..--+.....+ ..++|..|-
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666777777777777776653 3344444444443333333322 245555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.48 E-value=8.8 Score=35.43 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+.|++++|.+.|+.+....+.-+-...+.-.++.++-+.++++.|...+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444444444444433211111223333334444444444444444444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.7 Score=40.94 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (613)
++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44556666777777777777777777664 44677777777777777777777777777654 4677776666555
Q ss_pred HHH
Q 007193 204 ITA 206 (613)
Q Consensus 204 i~~ 206 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.1 Score=38.80 Aligned_cols=117 Identities=12% Similarity=0.008 Sum_probs=72.4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHccCCHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV--FN--ALITACGQSGAVD 214 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~--~li~~~~~~g~~~ 214 (613)
-.|+..+|-..++++.+. ++.|..+++--=++|.-.|+.+.-...+++..-. ..||... |. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456677777777777654 3556667777677777778777777777777644 1233322 22 2233455677778
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
+|++.-++..+.+ +-|.-.-.++...+-..|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8877777765431 334444555666666777777777766543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.99 E-value=12 Score=36.31 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=88.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCCHH
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNI-----KGTPE 270 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 270 (613)
.|..+.+++-+..++.+++.+-..-... +|..|. -....++..++.-.+.++++.+.|+...+.-- .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444554444455555444333221 122221 12233355566666677777777776544211 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCC-
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN----QGIS- 336 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~----~~~~- 336 (613)
++..|.+.|.+..++++|.-......+ .++.--..-|. .+.-++...|++..|.+.-++..+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777888888888777665554432 23321112222 223355566777777766665543 3322
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 337 VGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
........+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12334556777888888888887777654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.6 Score=33.36 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhhcC
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNT---ITYSILLVACERKD 423 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~a~~~~g 423 (613)
+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+. |-+ +. ..|.--...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4566788888888887776542 345677888888888888888888888777663 211 22 22333334567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 007193 424 DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 424 ~~~~a~~~~~~m~~~g 439 (613)
+.+.|+.-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.7 Score=39.04 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=23.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|..++...|++++|..+|..+.+.....+--...+--|.....+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444332111111122333333344444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.72 E-value=15 Score=36.63 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 134 (613)
|.+..-+..+++.+..++..++..+.++++..|-+ ..|..-+++-...+++.....+|.+.....+ +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 55555556667777777777777777777765533 3566667666666777777777777766533 345555555
Q ss_pred HHHHH
Q 007193 135 TTCAK 139 (613)
Q Consensus 135 ~~~~~ 139 (613)
+.-.+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 44333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.55 E-value=6.9 Score=32.62 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=25.6
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
.+.|++++|.+.|+.+......-+-...+--.++.+|.+.+++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555554431111111233334455555555555555555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.48 E-value=29 Score=39.30 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 007193 302 PDEVFLSALID----FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST- 376 (613)
Q Consensus 302 p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~- 376 (613)
|+...+..+.. .+.....+++|.-.|...-+. .-.+.+|-.+|+|++|..+..++.. ..+...
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHH
Confidence 45544444443 344456667776666543221 2345677788888888888887763 233322
Q ss_pred -HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 377 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 377 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
--.|+.-+...+++-+|-++..+... .|. .. +..+++...+++|.++..
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-~a----v~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS---DPE-EA----VALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc---CHH-HH----HHHHhhHhHHHHHHHHHH
Confidence 25688888899999999888877654 222 12 223445555666665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.83 Score=29.28 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 007193 240 LMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
+...|.+.|++++|.++|+++.+.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.9 Score=39.40 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 310 (613)
++..++..+...|+.+.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666777777777777777777777765 56667777777777777777777777776654 4666665555444
Q ss_pred HHH
Q 007193 311 IDF 313 (613)
Q Consensus 311 i~~ 313 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=4 Score=37.93 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
+..|...+...|++++|..+|..+.+.-.. | -...+--|.....+.|+.++|..+|+++.+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334444444444444444444444432111 0 1123333334444444555555555544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=20 Score=36.36 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007193 37 RQGRISECIDLLEDMER 53 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~ 53 (613)
+.|++-.-.++++.+-.
T Consensus 46 n~grVVSRdeLle~VWg 62 (458)
T PRK11906 46 SAGHVVLKDMIIESVWK 62 (458)
T ss_pred CCCceEcHHHHHHHhcC
Confidence 45666666666666643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.79 E-value=21 Score=36.42 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+..++-+.|+.++|.+.+.+|.+.. +..........|+..+...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444555566666666666665431 1111233445556666666666666666665543
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.69 E-value=9.3 Score=36.96 Aligned_cols=166 Identities=14% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHh
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIIS 341 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 341 (613)
.|..+..++-+..++.+++.+-..-.. .|..| ......++-.++...+.++++++.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555555544332 12222 112233455566666777888888877655311 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHcCCChhHHHHHHHHHHh----CCCCCC
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-----ALITALCDGDQLPKTMEVLSDMKS----LGLCPN 408 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 408 (613)
+..|-..|.+..++++|.-+.....+ .++..-..-|. .|.-++...|+..+|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888888888888887766655432 22211112222 244566778888888777776433 332221
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 409 -TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 409 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
......+.+.|...|+.+.|..-+++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334456677888899888887777654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.60 E-value=20 Score=35.89 Aligned_cols=146 Identities=10% Similarity=0.133 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (613)
...|...+.+-.+..-++.|..+|-+..+.+ ..+++.++++++..++ .|+..-|..+|+-=... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4667778888888888999999999999988 5678889999998776 67778899998854332 3554443 4566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.-+..-++-+.|..+|+...+. +..+ ...|..+|.--+.-|++..+..+-++|.. +-|...+-....+.|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7777888999999999966543 3334 56788899888899999998888888876 3455444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.47 E-value=17 Score=34.83 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
++..++.+|...+..+ +|..+++.+..+ .+-+| .++-.-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666655533 445555555433 12222 23333445555566666777777666554
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.38 E-value=8.7 Score=32.75 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (613)
+.++.+++..+++.+.--. |........-...+...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5667777777777666544 4444444444445555666666666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.2 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 121 (613)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444455555555555444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.98 E-value=12 Score=32.35 Aligned_cols=130 Identities=10% Similarity=0.153 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHMKS 367 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 367 (613)
+.++.+.+.++.|+...+..+++.+.+.|++.... ++.+.++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34445555666666667777777777766644433 3333444444443333332222111 1233334443333
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-.
T Consensus 90 -------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 -------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13455666777788888888777664321 1122233455555555554444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.86 E-value=7.4 Score=34.25 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNAL 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l 203 (613)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 233455566666666666666665555432 111111111111
Q ss_pred HH--HHHccCCHHHHHHHHHHHh
Q 007193 204 IT--ACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 204 i~--~~~~~g~~~~a~~~~~~m~ 224 (613)
.. .+...+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1233466777776665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.81 E-value=9.6 Score=31.03 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQV 178 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~ 178 (613)
++..|+++.|++.|......- +.....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|-..|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445555666666555555432 3345555555555555566666555555554432111111 122222234445555
Q ss_pred HHHHHHHHHHHhCC
Q 007193 179 AKAFGAYGIMRSKN 192 (613)
Q Consensus 179 ~~A~~~~~~m~~~g 192 (613)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.59 E-value=35 Score=37.14 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=71.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+.|.+.|++++|.+-+-+-.. .+.+...+ ..+.......+-..+++.+. -.+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 345589999999888876543 32333222 22223333444444444332 223444566778888888877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.-.+..+... .|.. .+-....+..+.+.+-.++|.-+-.... .+......++ -..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6665554433 2211 1113345555555565666655544432 1333333333 2455666666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.56 E-value=42 Score=38.08 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
|.-.++.--+.|.+.+|+.++ .|+...+. +-..-+.....+++|--.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 333344444555566665554 23333322 222333344555555555544321 1223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+.+|-.+|++.+|..+..++....- --..+-..|+.-+...+++-+|-++..+-..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555566666666665554432110 0001114455555556666555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.37 E-value=16 Score=32.97 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 312 (613)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44444555555566666665555555431 1233334455555555556666666666666655433321 11111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666777777777766644221 1223333344444566777777777777776543111355666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7887777777663 343 33344444444466667777777777665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.00 E-value=17 Score=32.66 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=106.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|-+..|+-=|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. .-.|++..|.+=
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence 344455555555554433 334678999998899999999999999999887655443344433332 345888888877
Q ss_pred HHHHHHCCCCcCH--HhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 327 LQEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 327 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
+...-+.. +.|+ ..|--++ ...-++.+|..-+ ++.. +.|..-|..-|-.|.-..-.++ .+++++...
T Consensus 156 ~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD 225 (297)
T ss_pred HHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh
Confidence 77766654 2222 2222222 2334556665433 3333 3565666665555543222222 234444332
Q ss_pred CCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 404 GLCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 404 g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
-.-+ ..||--+..-+...|++++|..+|+-.+..
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 346667778888999999999999887754
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.96 E-value=29 Score=35.42 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444555667777777777777654311 2333555667777777777777777666543
|
The molecular function of this protein is uncertain. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.76 E-value=4 Score=42.10 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
..+.-|.+++-.|+++.|-.++..+++. .+..+..+..++|-.++|+.+- +|+.. -.....+.|
T Consensus 588 l~vleyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lg 651 (794)
T KOG0276|consen 588 LEVLEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLG 651 (794)
T ss_pred hHHHHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcC
Confidence 3444555666677777776665554422 2233444555666666665431 11111 122334556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
+++.|.++..+.. +..-|..|-++..+.+++..|.+-|..... |..|+-.+...|+.+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 6666666654432 345567777777777777777776655442 4455666666666655555545
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
...+.|. .|.-.-+|...|+++++.+++..
T Consensus 717 ~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 5554442 22233345556677766666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.54 E-value=24 Score=33.99 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CcCHHhHHHHHHHHHhcCC--
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (613)
++.+.+++.|.+.|+.-+..+|-+....... . .....|..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4555666777777777666555543332222 1 124567788888877642 2344455555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 355 --WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
.+.+..+|+.+.+.|+.++ ..-+.+-|-++..... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3456666777777666554 2233333333332222 346777788888888877776666544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.17 E-value=42 Score=36.25 Aligned_cols=151 Identities=10% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (613)
.++-|++.+.+++|+++-+.....- +. ..-....++.-+...|++++|-...-.|-..+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3455889999999999887765432 31 2222333333345567888888888888778888888777777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------MVNAGIEPNVHTYGALID 170 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li~ 170 (613)
.... ..+.......+...|..++..+.. .+...-.++..+ ..+. ..+...-..|+.
T Consensus 440 ~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 4332 223322222345667766666655 222211111111 0111 112222334667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007193 171 GCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (613)
.|...++++.|+.++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777777777777776665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=23 Score=32.52 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.|.-...+|....++++|...+.+..+. .+.+...|. -....+.|.-+.+++.+. +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445566677777777766655531 122221111 112234455555555432 112334555666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCCCCCHHHHHHHHHHHHhcCCh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.+|.++.|-..+++.-+. ....++++|++++.+...-. ....--...+...-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 778777776666654321 11222333333333322100 00001112233334455666666
Q ss_pred HHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007193 251 DRAREVYKMIHKY----NIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEA 322 (613)
Q Consensus 251 ~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~ 322 (613)
++|-..|.+-... .--++ -..|-+.|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6665554332111 10111 1234445555566667777777777643321 1124556666666653 456665
Q ss_pred HHHHH
Q 007193 323 AFEIL 327 (613)
Q Consensus 323 a~~~~ 327 (613)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.50 E-value=6.5 Score=30.03 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007193 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~ 454 (613)
.-++.+-++.+....+.|++....+.+.||.+..++..|.++++-+. +.|. +...|..++.-.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 33566667777777899999999999999999999999999999877 4443 555788777643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.49 E-value=45 Score=35.85 Aligned_cols=302 Identities=13% Similarity=0.092 Sum_probs=170.7
Q ss_pred HcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCC
Q 007193 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKN 192 (613)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 192 (613)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +..+|.....-+.+..+. +++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 346666655554 4577777888899999888776522111 155666666666665332 23333333322221
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 264 (613)
. .+.++|..+.+-....|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-++.+.-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888765322211110 112234455666677788777777766554431
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH----
Q 007193 265 -----IKGTPEVYTIAIN--------CCSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVE---- 321 (613)
Q Consensus 265 -----~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~~~~~li~~~~~~g~~~---- 321 (613)
.+.....|.-++. .+.+.++-.++...|. ... ..+..|+ ......+|++.....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1111122222222 1111122122222111 100 1122333 233334444443311
Q ss_pred ------HHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007193 322 ------AAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 322 ------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
+-..+.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 112222222222 323344456666667778899999999988877 589999988999999999998866
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6654432 36678888899999999999999886654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=31 Score=33.06 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=121.2
Q ss_pred HhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCC
Q 007193 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEP 160 (613)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~ 160 (613)
+.+..+|.......+.++...|.. .+...+..+.. .+|...-...+.++++.|+. +++...+..+... .+
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 334456666666666677666643 33333333332 34566666667777777763 3566666655333 45
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 007193 161 NVHTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 235 (613)
+..+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~ 174 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGD 174 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHH
Confidence 666666666666554321 223333333322 2244444455666666665 344555544443 23434
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 236 TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 236 ~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
+-...+.++.+.+ ....+...+..+.. .++..+-..-+.++.+.++. .|+..+-...+.+. .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHH
Confidence 4444444555442 12344444444442 33445666666666666663 45555555544422 123455666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
...|.. +|...+..+.+.. +|..+-...+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 666664 4666666655532 3544444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.6 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666555
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.36 E-value=20 Score=30.63 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHcCChhHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~ 155 (613)
...|++.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 345555555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.97 E-value=22 Score=30.76 Aligned_cols=134 Identities=14% Similarity=0.234 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+.++.+.+.+++|+...+..+++.+.+.|++..-.+ +.+.++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444555566777777777777777777776554433 334444445444443332222 2223333333333322
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
=...+..++..+...|++-+|.++....... +......++.+..+.++...=..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0024555666777777777777777654211 111223455555555555544444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.71 E-value=9.8 Score=33.46 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHH
Q 007193 282 TGDWEFACSVYDDM 295 (613)
Q Consensus 282 ~g~~~~a~~~~~~m 295 (613)
.+++..|-+.|-+.
T Consensus 126 ~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 126 QRDFKEAAELFLDS 139 (177)
T ss_pred hchHHHHHHHHHcc
Confidence 45555555555444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=85.61 E-value=56 Score=35.10 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
....+.+...-+..+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+-+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~- 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE- 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 34444444433334666677788888888888888888876654421 123455555566666666555544444432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HH--HhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA--CERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a--~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
.|+..|... ..++++.+....+..+.-++-..+ .- ..+.|+..+|.+.+-.+.+.++.|...
T Consensus 467 --------------~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 467 --------------EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 233333211 111111111100001111111111 11 123477777777777777777777766
Q ss_pred HHHHHHHH
Q 007193 446 MFKCIIGM 453 (613)
Q Consensus 446 ~~~~li~~ 453 (613)
...-|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.56 E-value=1.8 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.20 E-value=29 Score=31.66 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.+++.+|..+|+++...
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.79 E-value=1.6 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555555555555553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=33 Score=31.79 Aligned_cols=180 Identities=8% Similarity=-0.012 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
...|+.-+ .-.+.|++++|.+.|+.+.... +. ...+--.++-++.+.+++++|+..+++....-+.....-|..-
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34444443 3457789999999999988653 22 3445566777888999999999999988776443333444444
Q ss_pred HHHHHhc-------CCHH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H-H
Q 007193 311 IDFAGHA-------GKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-M-N 378 (613)
Q Consensus 311 i~~~~~~-------g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~-~ 378 (613)
|.+.+.- .+.. .|..-|+.+++. |=...-...|......+. |... + .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~------d~LA~~Em 171 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLN------DALAGHEM 171 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHH------HHHHHHHH
Confidence 4444421 1222 223333333332 111111122222221111 1001 1 1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+..-|.+.|.+-.|..-+++|.+. .+-+. ..+-.+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3445677888888888888888775 22222 3345555777777777777766554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.15 E-value=16 Score=34.77 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (613)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (613)
...+...++..-....+++.+...+-.+.... ..++.. -.+.++.+.+ -+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555455566666666665554431 111111 1222332222 245566666666666777777777777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhC
Q 007193 380 LITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
+|+.+.+.+++.+|..+...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777776665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.02 E-value=32 Score=30.93 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (613)
..+......+...+....+...+...... .........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444444555555555555554444320 0112233344444444555555555555555555433222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 007193 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 278 -~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666644211 112233333333355666777777777776665311135666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.+.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788887777776542 33 334444444444666678888777776653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.16 E-value=20 Score=27.87 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007193 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~ 454 (613)
+..+-++.+....+.|++....+.|.||.+..++..|.++++-+. +.|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 556666777777899999999999999999999999999999887 44433 33788887654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.14 E-value=2.7 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|..+...|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.76 E-value=28 Score=29.32 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=35.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
..++++++..+++.|.--. |........-...+...|++.+|.++|..+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5778888888888877654 55555555555566677788888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.52 E-value=20 Score=34.15 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
|.+....+...++..-....+++.+...+-.++.... ...|+. +-.+++..+. .-++++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444444444444445556666666555543210 001111 1111222222 224556666666666677777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777776666665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.22 E-value=75 Score=33.97 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLI--TT-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (613)
...|.+.++...+.|. .........+ .+ ++...+.+.|...|....+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4568888888777662 1122222222 22 3456688888888888765 44 2334555666666532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--hcCC
Q 007193 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (613)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (613)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ . ++..-+.+++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHhCCCcCCC
Confidence 5566888887777776 4555444333333333 245677888887776542 1 22222222211111 2235
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
...|..++.+..++| .|....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 677777777777777 3322222222333333 666666666666655544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.74 E-value=50 Score=31.59 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=86.8
Q ss_pred HcCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 007193 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~---- 162 (613)
.+.|+++.|..++.+....- ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666766666665422 12221 23444444443333777776666554322 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
.+...++.+|...+..+ +|..+++.+... .|+ ..++..-+..+.+.++.+++.+.+.+|.... .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 45667777887777654 556666666544 233 4455555677777899999999999998752 2122344
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHhcCCCCC
Q 007193 238 GALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 238 ~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
..++..+ .... ...|...++.+....+.|.
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 4444433 3333 3445555555544434443
|
It is also involved in sporulation []. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.58 E-value=49 Score=31.38 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 107 ~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
.+.+|+.+|+.... ..+--|..+...+++...... ....-.++.+-+.. .|-.++..+-..++..+++.+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555552221 123345555555555554411 12222233333332 223566666777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
++++..... +..-|...|..+|+.-...|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766544 4455667777777777777777666666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.31 E-value=18 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a 288 (613)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.10 E-value=47 Score=30.89 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=89.2
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHcC
Q 007193 37 RQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~ 105 (613)
+...+++|+.-|+++.+... -.|.--..--++......+++++....|.++. .-+..+.|++++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 66799999999999886431 13443333344555566677777777776643 33556777777777666
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----C-------CCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEA-----GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI----E-------PNVHTYGALI 169 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~-------~~~~~~~~li 169 (613)
.+.+.....++.-.+. +-..=-.|-+.|-..|...+.+.+..+++.++.+..- + .-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6665555544432211 0011112334566666677777777777766653210 1 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+|....+-.....+|++..
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 77777777666667776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.07 E-value=2.3 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHcCChhH
Q 007193 127 CKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~ 145 (613)
..+|+.+...|...|++++
T Consensus 13 ~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHHHHCcCHHh
Confidence 3333333333333333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.04 E-value=4.3 Score=23.92 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+|..+..++...|++++|...|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.91 E-value=89 Score=33.93 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCceeeccccCcchHHHHH
Q 007193 552 PRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVY 592 (613)
Q Consensus 552 ~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 592 (613)
++| ++...+++++|..+...+.-+=+.+.++..+.++.
T Consensus 522 ~~A---L~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~l 559 (613)
T PF04097_consen 522 EQA---LDIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNL 559 (613)
T ss_dssp HHH---HHHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTH
T ss_pred HHH---HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHH
Confidence 456 45555578899777666666677888888876643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.57 E-value=27 Score=30.90 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=81.3
Q ss_pred hHHHHHHHH---hcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHH----
Q 007193 28 QLHSYNRLI---RQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNML---- 98 (613)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l---- 98 (613)
....|..++ ..+.. +.....+.+...+.. .........+.......+++++|...++... .+....+..+
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 333444444 45555 666667777766522 2233334445567778888999998888654 3433344433
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 99 -MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 99 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
.+...+.|.+++|+.+++.....+. .......--+.+...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3567788899999998887765432 12233444577888999999999999888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.24 E-value=34 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=28.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
..++.+++..+++.|.-. .|+ ..++... .+...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 366677777777666643 232 2233333 345677777777777777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.07 E-value=25 Score=36.58 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
..+.++..+.+.|-.++|+++- +|.. .-.....+.|+.+.|.++..+.. +..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445555666666555555432 1211 11122345666666666655443 3456666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+.+++..|.+.|.... -|..|+-.+...|+-+....+-....+.|. .|.-.-+|...|+++++
T Consensus 678 ~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 678 SAGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hcccchhHHHHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 7777777766665543 134455556666665555555455555552 12222345566777766
Q ss_pred HHHHHHH
Q 007193 289 CSVYDDM 295 (613)
Q Consensus 289 ~~~~~~m 295 (613)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 6665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 2e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 7e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 5e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 5e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 382 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 499 IPTVEVVSKVLGCLQLPYNAD 519
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 9e-13
Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 197/664 (29%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+ ++ +DP+ + ++ Q R + K Y + +N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS-KPY-----ENCLLVLLNVQ 254
Query: 280 SQTGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAG 315
+ W +C V D D + PDEV S L+ +
Sbjct: 255 NAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLD 312
Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPT 373
++ +E + + S++ + W ++H+ KL
Sbjct: 313 C-----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTI 358
Query: 374 V-STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC- 406
+ S++N L I L M V++ + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 407 --PNTITYSI----LLVACERKDDVEVGLMLLSQ-------AKEDGVIPNLVM-FKCIIG 452
P T SI L + + +++ + ++ +D + P L F IG
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 453 ---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
E+ L F +E K + + T++ +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF----LEQK---IRHDSTAWNASGSILNTLQQLKF-- 529
Query: 510 GCLQLPY------NADIRERLVENLG----VSADALKRSNLCSLIDGFGEYDPRAFSLLE 559
Y N ERLV + + L S L+ + E
Sbjct: 530 ------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEA-IFE 581
Query: 560 EAAS 563
EA
Sbjct: 582 EAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 82/541 (15%), Positives = 149/541 (27%), Gaps = 182/541 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVEVGLMLLS-----QAK---------EDGVIPNLVM 446
YS + L E + + + M+ + K G I N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 447 ----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---ALM-----VYRE 492
+K I +YE R +N +L F I +K+T L ALM ++ E
Sbjct: 526 QLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 493 A 493
A
Sbjct: 583 A 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.85 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.65 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.54 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.34 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.24 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.18 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.18 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.15 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.14 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.13 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.05 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.99 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.98 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.94 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.94 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.81 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.71 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.7 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.53 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.18 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.56 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.56 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.72 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.08 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.94 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.17 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.49 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.73 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.77 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.13 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.41 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.58 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.63 Aligned_cols=416 Identities=8% Similarity=-0.045 Sum_probs=358.1
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC--CCCCHHHHHHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (613)
++...|+.++ +.|++++|+.+|++|.... |.. .....++..+...|++++|..+|+++ .++++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4556666555 7899999999999999765 444 44556888899999999999999998 4789999999999
Q ss_pred HHHcCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (613)
.|.+.|++++|..+|+++. .. +.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 9999999999999998532 11 223458899999999999999999999999998764 2233333
Q ss_pred HH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999875 68999999999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
.+.|++++|.++|+++.... +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3467789999999999999999999999998765 6678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886433 68899999999999999999999999999875 56889999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 441 (613)
.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999875 66887 7899999999999999999999999999754 3
Q ss_pred CCHHHHHHHHHHHHh
Q 007193 442 PNLVMFKCIIGMCSR 456 (613)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (613)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=303.00 Aligned_cols=402 Identities=10% Similarity=0.021 Sum_probs=349.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------------------CHH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TLS 93 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~ 93 (613)
..+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +..
T Consensus 125 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 125 QVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 4455899999999999998653 445667778888999999999999999965433 488
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------HH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--------------------------------------IT 135 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------i~ 135 (613)
+|+.++.+|.+.|++++|.++|+.|.+.+ +.+...+..+ +.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 3334443333 55
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (613)
.|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|+.++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 666889999999999998865 5899999999999999999999999999998765 4477889999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
|.++++++... .+.+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++
T Consensus 358 A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 358 LYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999863 25678899999999999999999999999998865 567889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 007193 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK 371 (613)
Q Consensus 296 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~ 371 (613)
.+.+. .+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 98764 378899999999999999999999999998875 557899999999999999999999999999775 567
Q ss_pred CC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 007193 372 PT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFK 448 (613)
Q Consensus 372 ~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 448 (613)
|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+ ...+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 588 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASD 588 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 77 7899999999999999999999999998864 448899999999999999999999999999984 454 33444
Q ss_pred HH
Q 007193 449 CI 450 (613)
Q Consensus 449 ~l 450 (613)
.+
T Consensus 589 ~l 590 (597)
T 2xpi_A 589 LL 590 (597)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=269.30 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=135.1
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 007193 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 322 (613)
+..+.+.+.+.+....+. .++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445555555444433 4666667777777777777777777776777777777777776665443 566
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|+.||..||+++|.+|++.|++++|.+++++|.+.|..|+..||+.+++.|.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=264.56 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~ 305 (613)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666677777777777777777777777777777777777777766543 678889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
+.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-26 Score=234.46 Aligned_cols=377 Identities=12% Similarity=0.045 Sum_probs=283.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
..+.+.|++++|.+.+.++.+.. |.+......+...+...|++++|..+++... +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45668899999999999888876 6666677777777777888888888877543 556778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887764 4456678888888888888888888888887763 3345567777777888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
+.. +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...|++..... +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 652 3346778888888888888888888888877632 3346677777788888888888888888777764 4557
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
.++..+...|.+.|++++|.+.|+++.+.++. +..++..+...+.+.|++++|...++.+.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 77888888888888888888888888776543 56677778888888888888888888877764 56677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD 423 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 423 (613)
.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+. .| +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 88888888888888877643 345677788888888888888888888887763 45 3445555555444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-25 Score=225.44 Aligned_cols=362 Identities=13% Similarity=0.077 Sum_probs=316.7
Q ss_pred HHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 007193 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (613)
..+.+.|++++|.+.|.++. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34566789999999998753 4566777888888999999999999999988865 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|.++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456789999999999999999999999998763 23455677788899999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 305 (613)
. .+.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++.....+. +..
T Consensus 164 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 4 24457889999999999999999999999999876 567889999999999999999999999999886543 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
++..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 5567889999999999999999999999998764 567899999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...++++.+ ..|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 999999999999999875 244678899999999999999999999999987 4554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=201.82 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=232.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.++..|..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 355667777777777777777877777777653 4567777777777777788888887777777654 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCC
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 233 (613)
..|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...|+++... .+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 7777778888888887777765 3332 444444 33377778888888888877653 2345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--- 310 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--- 310 (613)
..++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...|...|++++|+..|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 6777777888888888888888888777654 556777888888888888888888888887765332 33444333
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (613)
Q Consensus 311 ---------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (613)
...|.+.|++++|...|..+.+.. +.+ ..++..+...+.+.|++++|...++++.+.. +.+...|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 677778888888888888877653 112 3467777788888888888888888876543 3457778
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH------------HHHhhcC-----CHHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (613)
..+..+|...|++++|.+.|+++.+ +.|+ ...+..+. ..|...| +.+++++.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888888888888888888888776 3454 34444444 2233444 55677777775
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-21 Score=197.44 Aligned_cols=306 Identities=13% Similarity=0.083 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
+.+...+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4567778888888888888888888888887653 4567788888888888888888888888887764 4457778888
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-H---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H---ITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~---~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
...|.+.|++++|.+.|+++... .|+ . ..+..+ ...+.+.|++++|...|+++.+.. +.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 88888888888888888888753 344 3 444444 344788888888888888887765 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH--
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-- 345 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 345 (613)
+..++..+...|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...|+.+.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 677888888888888888888888888876543 267788888888888888888888888887654 3344444444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007193 346 ----------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (613)
Q Consensus 346 ----------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (613)
...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|++.++++.+.. +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 77888888888888888888764 344 3467778888888888888888888877642 33677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
+|..+..+|...|++++|...++++.+ +.|+
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 888888888888888888888888876 3454
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-21 Score=202.21 Aligned_cols=402 Identities=10% Similarity=0.014 Sum_probs=312.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCC
Q 007193 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 106 (613)
..-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34456679999999999999999987 5 46667778888899999999999998754 557789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------------------------------
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------------------------ 156 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------ 156 (613)
++++|...|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999999876 445555555555444433333332222111100
Q ss_pred -----CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 007193 157 -----GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALITA 206 (613)
Q Consensus 157 -----g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~~ 206 (613)
.. +.+...+..+...+.. .|++++|...|+++.. ..- +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 1113344444444444 8999999999999987 311 1234577788889
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
+...|++++|...|+++... .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999998864 3447788888999999999999999999998875 556788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+|...|+++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999887654 56788888999999999999999999998764 4567888999999999999999999999887
Q ss_pred hCCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 367 SIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 367 ~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+... .++ ...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5321 111 3488899999999 999999999999988753 346778888999999999999999999999884
Q ss_pred CCCCCHH
Q 007193 439 GVIPNLV 445 (613)
Q Consensus 439 g~~p~~~ 445 (613)
.|+..
T Consensus 479 --~~~~~ 483 (514)
T 2gw1_A 479 --ARTME 483 (514)
T ss_dssp --CSSHH
T ss_pred --ccccH
Confidence 45543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-20 Score=198.95 Aligned_cols=370 Identities=6% Similarity=-0.034 Sum_probs=287.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (613)
....+.+.|++++|+..|+++.+.+ |.+...+..++.++...|++++|...|+++. +++......++..+.....
T Consensus 45 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 45 LSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 3345568999999999999999987 7777788888999999999999999998753 3344444444444333222
Q ss_pred hHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH---c
Q 007193 108 SEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK---S 140 (613)
Q Consensus 108 ~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~~~---~ 140 (613)
...+.+.+..+... .. +.+...+......+.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 22222222111100 00 1113344444444444 8
Q ss_pred CChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 141 g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.... |+...+..+...+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHH
Confidence 999999999999987 311 2245678889999999999999999999998874 4478888999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
...|++++|...++++... .+.+..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 281 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999864 24467788899999999999999999999998876 5567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHh---cCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~ 359 (613)
|...++++.+.... +..++..+...+...|++++|...+..+.+.... ++ ...+..+...|.. .|++++|.
T Consensus 357 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 99999999876443 5678889999999999999999999998765311 11 3488999999999 99999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
..|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999988754 346788999999999999999999999999884 5765443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-20 Score=194.98 Aligned_cols=390 Identities=12% Similarity=0.043 Sum_probs=293.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
-+.+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+...|..+...+...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345568999999999999999987 7788888888999999999999999998754 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHH------------------
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT------------------ 164 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~------------------ 164 (613)
++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+...
T Consensus 110 ~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 9999999633 22 2322 222344555566667788888877432 11122221
Q ss_pred ------------HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHccCCHHHH
Q 007193 165 ------------YGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD--------RVVFNALITACGQSGAVDRA 216 (613)
Q Consensus 165 ------------~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~a 216 (613)
...+...+.. .|++++|..+|+++.+. .|+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 2222222211 24788999999998876 333 23466666778888999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
...+.+.... .|+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|+++.
T Consensus 263 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 263 QVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999998864 4567788888888999999999999999988876 5677889999999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 007193 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LK 371 (613)
Q Consensus 297 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 371 (613)
+.... +...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76543 55778888899999999999999999988875 5567788889999999999999999999876532 11
Q ss_pred CCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 372 PTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.....+..+...+.+. |++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344555667777 99999999999988752 346778888889999999999999999998874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=166.76 Aligned_cols=313 Identities=11% Similarity=0.043 Sum_probs=184.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777778888888888888888887764 5567788888888888888888888888877653 346677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 234 (613)
.+...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++... .+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCch
Confidence 888888888888888888765 34 23333333 24445555555555555555432 12334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.... +...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-
Confidence 445555555555555555555555555443 334455555555555555555555555555443221 11111111000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (613)
. .......+...+.+.|++++|...++++.+... .+. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCH
Confidence 0 000111224456666666666666666655321 122 2233455666667777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++|++.+++..+.. +.+..++..+...+...|++++|...++++.+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777666531 22556666666677777777777777776665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-17 Score=176.93 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=279.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (613)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (613)
..+...+..+...|++++|+..|+++. +.++..|..+...+.+.|++++|.+.++.+.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344556677778888999999998754 5678889999999999999999999999998875 567888899999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHH------------
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVF------------ 200 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~------------ 200 (613)
..|++++|.+.|+.+ .. .|+ ..+..+..+...+....|...++++... ...|+....
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999633 22 222 2233345566666677888888887543 112222221
Q ss_pred ------------------HHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHh
Q 007193 201 ------------------NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACAN 246 (613)
Q Consensus 201 ------------------~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~--------~~~~~~ll~~~~~ 246 (613)
..+...+.. .|++++|..+++++... .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHh
Confidence 222222222 14788999999998864 333 2346666778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|++++|...|+.+.+.. |+..++..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 44788999999999999999999999999887543 678899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--
Q 007193 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-- 404 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 404 (613)
+..+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.|+++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998875 4467788999999999999999999999988764 3457788999999999999999999999987632
Q ss_pred ---CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 405 ---LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 405 ---~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
.......+......+... |++++|...++++.+.. +.+...+..+..++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 111222344445667777 99999999999998742 2345556556555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-17 Score=163.57 Aligned_cols=312 Identities=12% Similarity=0.041 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (613)
+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566677777888888888888888877654 4457777788888888888888888888877652 3356677777788
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+...|++++|...|++.... .| +...+..+...+. ...+..+...+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 88888888888888877653 34 2222222211000 01122334556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 007193 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (613)
Q Consensus 283 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (613)
|++++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666655332 45566666666666677777777666666553 445666666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhcCCH
Q 007193 363 EHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPN-T----ITYSILLVACERKDDV 425 (613)
Q Consensus 363 ~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~ 425 (613)
++..+.. +.+...+. .+...+.+.|++++|++.++++.+. .|+ . ..+..+...+...|++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 7666542 22233332 3366789999999999999998875 344 3 2345577889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccC
Q 007193 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (613)
++|...++++.+.. +.+...+..+...+.+ ++++|....+.....++
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999998752 2356667767666654 67777777665554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-17 Score=161.66 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 33334444444444444444444444332 2223333334444444444444444444444331 122334444444444
Q ss_pred ccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 209 QSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 209 ~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
..| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 444 4444444444444321 1223344444444444444444444444444432 2223344444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHhHHHHHHHHHhcCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
|.+.+++..+.... +...+..+...+...|++++|...++...+.. .+.+..++..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555544443322 33444444444445555555555544443321 0222344555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
..|++..+.. +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5555554432 22344555555555555555555555555444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-17 Score=159.72 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.++..+..+...+...|++++|..+|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677778888888999999999999998775 5556677778888899999999999999988764 44678889999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 170 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
..+...| ++++|...|++..... +.+...|..+...+...|++++|.+.+++..... +.+...+..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 9999999999998764 3456788889999999999999999999987642 334567777889999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~ 320 (613)
++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998876 6678899999999999999999999999887632 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 007193 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (613)
++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999998875 4577889999999999999999999999988754 34677888888777 455544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-15 Score=158.90 Aligned_cols=394 Identities=11% Similarity=0.080 Sum_probs=265.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH-HHcCCChHHHH
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV-CASSKDSEGAF 112 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~~~~~~A~ 112 (613)
.+.|++++|+.+|+++.+.. |.+..++..++..+.+.|++++|..+|++.. .|++..|...+.. ....|+.+.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46799999999999999876 7777777788888888899999999999865 4677788877753 34567777766
Q ss_pred H----HHHHHHHc-CCC-CCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 007193 113 Q----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----- 172 (613)
Q Consensus 113 ~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----- 172 (613)
+ +|+..... |.. ++...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66666543 443 356778887777655 688999999999988731111123444322211
Q ss_pred --------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHcc----CCH----HHHHHH
Q 007193 173 --------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS----GAV----DRAFDV 219 (613)
Q Consensus 173 --------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~ 219 (613)
.+.+++..|..++.+. .+.. ++|+ ...|...+...... ++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 1234566677666652 2211 2443 23455444332221 222 366677
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++
T Consensus 261 y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 261 YEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 7777653 23456677777776665 68876 7888888877632355677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHhcCCHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYE 363 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~ 363 (613)
++|..+|+++.+.... + ...|...+..+.+.|++++|..+|+...+.. +.+...+...... +...|+.++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 8888888888875322 3 2467777777778888888888888887753 2233333322222 335788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..++.++.+
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776643 3357788888888888888888888888887753 2332 44677777777778888888888887775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-14 Score=151.11 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=297.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHc----CCChHHHHHH
Q 007193 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (613)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~ 114 (613)
+...+.+..+.| +......+...+.. .+++++|+..|++.. ..++..+..+...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555555554 23334445555555 678899999998754 4577788888888888 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007193 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (613)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (613)
|+...+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|+..|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66777888888888 789999999999998875 67778888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (613)
+..+.| +...+..+...|.. .++.++|.+.|.+.... .+...+..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67788888888887 89999999999998763 356677788888876 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 007193 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (613)
+..+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|...+..
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988765 45677778888887 899999999999998775 456777777888877 899999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 007193 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (613)
..+.+ +...+..+...|...| +.++|.+.|++..+. .+...+..|...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98876 4567778888888766 789999999999885 467888889999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC
Q 007193 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (613)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 441 (613)
.| +...+..+...|.+ .++.++|...|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777778888887 89999999999999986643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-14 Score=150.12 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=286.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHc----CCCh
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~ 108 (613)
.+++++|+..|++..+.| +......+...+.. .++.++|++.|++.. ..++..+..+...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 789999999999999876 23344556667766 788999999998865 4577788888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (613)
++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 57778888888887 789999999999998865 77888999999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (613)
|...|++..+.| +...+..+...|.. .++.++|.++|++.... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998875 56777778888876 78999999999998763 355677778788887 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 007193 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (613)
|...|++..+.+ ++..+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 457888888888887 89999999999999875 4567777777787766 789999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 396 (613)
..|+...+.+ ++..+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888899999988 899999999999998854 67788889999988 8999999999
Q ss_pred HHHHHhCCC
Q 007193 397 LSDMKSLGL 405 (613)
Q Consensus 397 ~~~m~~~g~ 405 (613)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-17 Score=163.46 Aligned_cols=295 Identities=12% Similarity=-0.007 Sum_probs=154.4
Q ss_pred HHHHHHHH-HHHhCC---CC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 007193 75 KAIKEAFR-FFKLVP---NP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 75 ~~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (613)
+++++|+. .|++.. +. +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+...+.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55666665 555432 11 23345555566666666666666666666543 34455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... |+.. .+..+... .. .
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h--
Confidence 66666655543 3345555566666666666666666666655542 2211 11100000 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 303 (613)
..+. ..+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++...... +
T Consensus 179 ----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 0000 00111222 226666777777776666554 22 4566666666777777777777777666654322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (613)
..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666665543 344556666666666666666666666665442100 01
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
..+|..+..+|...|++++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=163.79 Aligned_cols=300 Identities=11% Similarity=-0.035 Sum_probs=195.6
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCch----HHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 37 RQGRISECID-LLEDMERKGLLDMD----KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 37 ~~g~~~~A~~-l~~~m~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
..|++++|+. .|++..+.. |.+ ......++..+...|++++|...|+++. +.+..+|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFE--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCC--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcC--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 4578899988 887665443 222 2234456777888999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++.... +.+...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h
Confidence 99999999999876 6678999999999999999999999999999874 2233333221000 00 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 007193 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
..+. ..+..+...+ ..|++++|...|+++.... +-.++..++..+...|.+.|++++|...|+++.+.. +.+
T Consensus 179 ----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0000 1111122222 5666677777776665531 111145666667777777777777777777766654 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CcC
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI----------SVG 338 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~ 338 (613)
..+|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...++.+.+... +..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 66777777777777777777777777766533 2556677777777777777777777777665421 112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 339 IISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
..+|..+..+|.+.|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 5778888888888888888887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-19 Score=187.63 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
..|||++|++|++.|++++|..+|+.|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHH
Q 007193 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (613)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~~ll 241 (613)
|.++++.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.+ +++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 4789999999999999999999999997766543 333333332 233433 45555667
Q ss_pred HHHHhcC
Q 007193 242 KACANAG 248 (613)
Q Consensus 242 ~~~~~~g 248 (613)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-14 Score=149.66 Aligned_cols=397 Identities=10% Similarity=0.064 Sum_probs=281.3
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 007193 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (613)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (613)
|++..+.+ |.+...+..++.. .+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 6666666666664 56788999999999864 457778999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007193 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (613)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (613)
|++..|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 45677777665 7776654 35443 56788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC-CCCCCC--------HHHHHHH
Q 007193 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m------~~~~-~~~~~~--------~~~~~~l 240 (613)
......+....|....... .+.+++..|..++... .... ..++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123444322211 1234567777766652 2110 013443 2345555
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHC
Q 007193 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (613)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~ 298 (613)
+...... ++. ..+..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433221 232 36778898888764 6678899999888876 68877 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (613)
-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 122367889999999999999999999999999864 2233 589999999999999999999999998753 2223333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHH
Q 007193 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (613)
Q Consensus 378 ~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~ 453 (613)
...... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 322222 346899999999999988752 3367889999999999999999999999999853 3333 3455555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=181.25 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKN---QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
.||+++|++||+.|++++|.++|..|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4666666666666666666666655543 3566666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 382 TALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 382 ~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
.++++.|+. ++|.++|++|.+.|+.||..||++++.++.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 666666653 55666666666666666666666666544443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-16 Score=155.85 Aligned_cols=267 Identities=11% Similarity=-0.064 Sum_probs=187.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.+...|..+...+.+.|++++|...|+.+.+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999999875 5678899999999999999999999999988764 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..|...|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.|+++.... +-.++..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 9999999999999999998764 222 1223334667777777888888877776542 1112566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+..+. +..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 77777777777777777777777664 455677777777777777777777777777665332 4666777777777777
Q ss_pred CHHHHHHHHHHHHHCCCC-----------cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
++++|...|+++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777766553200 023455555666666666655555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=157.78 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
|..+...+.+.|++++|...|+++.... +.+..+|..+...+...|++++|...|+++.... +.+..++..+...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHH
Confidence 4444444444444444444444444331 2234444444444444444444444444444321 22344444444445
Q ss_pred HhcCChHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFA 314 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~ 314 (613)
...|++++|...|+++.+.... .....+..+...+...|++++|...|+++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555444432100 01223445566777777777888777777765432 1466777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
...|++++|...++++.+.. +.+..+++.+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 77788888888887777664 4567777788888888888888888888776643 334677778888888888888888
Q ss_pred HHHHHHHhCC---CCC--------CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 395 EVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 395 ~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
+.|+++.+.. ..| +..+|..+..++...|+.+.+..+..+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888776521 000 246677777788888888777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=157.04 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=129.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 007193 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (613)
+...+.|+ +.|++++|.+.++++... ..+..++..+.+.|++++|++.|.+. +|...|..+++++...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 33455666 678899999999998442 24557788888899999999999764 567789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766664 4557888999999999999999888884 36778999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 7 36889999999999999999999887 2578999999999999999999654443 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (613)
.+.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- +++.+.++.|.. +.+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44455578899999999999999999987665 33566677776666653 344455554442 223333 46
Q ss_pred HhHHHHHHHHHhcCCHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (613)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888889999999988775
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-15 Score=145.75 Aligned_cols=254 Identities=12% Similarity=0.148 Sum_probs=164.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (613)
.......|++..|+..+++..... |.+. .....+.+.+...|++++|+..++...+|+..++..+...+...++.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHH
Confidence 344567788888888777654433 3332 2445556677777777777777766555566667777777777777777
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|++.++.+...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777665433 455566666777777777777777766 3566677777777777777777777777776
Q ss_pred hCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007193 190 SKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (613)
Q Consensus 190 ~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (613)
+. .|+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++..+.+ +
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 65 2443211 11223333446677777777777653 24456666677777777777777777777766654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 007193 267 GTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG 299 (613)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g 299 (613)
.++.++..++..+...|+.++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 566667777777777776654 456666666553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=149.08 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456667777888888888888888887764 4567778888888888888888888888887764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH--HHHhc
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANA 247 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~ 247 (613)
.|...|++++|...|+++.... |+. ..+..+... .|+......+.. .+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------------------------------CCTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHc
Confidence 8888888888888888887652 221 122221000 000000111101 13444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554443 334455555555555555555555555555544321 3445555555555556666666555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhHHHHH
Q 007193 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
+.+.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+...+.+.|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555443 3345555566666666666666666666554432110 245566666666666666666666
Q ss_pred HHH
Q 007193 397 LSD 399 (613)
Q Consensus 397 ~~~ 399 (613)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=161.91 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=128.4
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (613)
.+.|++++|.+++++++.| .+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3557789999999998655 4899999999999999999999964 3577789999999999999999999777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 007193 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (613)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 231 (613)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 76654 5567888999999999999999888774 367779999999999999999999999875
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 311 (613)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . .+.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHH
Confidence 15888999999999999999999887 256899999999999999999966555422 2 333455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (613)
..|.+.|++++|..+++...... +-....|+.|.-.|++- +++.+..+.|.. +.+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998887665 55666777777777654 455555555542 222223 34568888888
Q ss_pred HHcCCChhHHHHH
Q 007193 384 LCDGDQLPKTMEV 396 (613)
Q Consensus 384 ~~~~g~~~~A~~l 396 (613)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888998888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-15 Score=147.66 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555666666666666666665543 3355556666666666666666666666665542 234555555556666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (613)
..|++++|.+.++++.... |+ ...+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS----TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666655431 11 1111111000 0001111122 22 37788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887543 78889999999999999999999999998875 556889999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHH
Q 007193 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------------TITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
.+.. +.+..+|..+...|.+.|++++|.+.++++.+. .|+ ..++..+..++...|+.++|..++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8754 346889999999999999999999999998774 343 678889999999999999999998
Q ss_pred HHHH
Q 007193 433 SQAK 436 (613)
Q Consensus 433 ~~m~ 436 (613)
++..
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 7554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=139.69 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=139.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (613)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554322 2222 23344556666666666666544331 2445555666666666666666
Q ss_pred HHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (613)
+|.+.++++... +..| +...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 83 ~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665542 1222 344444555666666666666666655 3455666666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007193 294 DMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (613)
Q Consensus 294 ~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (613)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666553 332111 112222333466666666666666652 4556666666666666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHcCCChhH-HHHHHHHHHh
Q 007193 371 KPTVSTMNALITALCDGDQLPK-TMEVLSDMKS 402 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 402 (613)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2345566666666666666654 4566666655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-12 Score=142.14 Aligned_cols=378 Identities=15% Similarity=0.176 Sum_probs=272.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
+.-..+...++..|.+.+|++++++..-.+. ++.+......++....+. +......+..+...-+ ..-+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3344455667899999999999999985432 234555555444433332 2333333333333222 3446778899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999863 12223344433 7788999999998652 577899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (613)
|.+. -|...|..++.++.+.|++++|.+.+....+. .++....+.++.+|++.+++++...+. +
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 9764 36788889999999999999999999877653 344334446889999999988644442 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (613)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 345567778999999999999999999985 36999999999999999999999876 35789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH--hh
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC--ER 421 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~--~~ 421 (613)
+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..... .| ....|+-+..++ .+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCC
Confidence 9999999999999988776543 56677789999999999999999999887653 34 333454444444 44
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHh--hHHHHH
Q 007193 422 KDDVEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (613)
.++..++.++|..-. ++.| +...|.-++-.|.+ .+++|-
T Consensus 1329 peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 555556666655322 2322 35567777777654 444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-14 Score=146.86 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCC------------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-
Q 007193 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G- 122 (613)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g- 122 (613)
..++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...++...+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3444555566666666666666665421 123456666666677777777776666655432 0
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 007193 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 123 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
. .....++..+..++.+. +++++|.+.|++..+.. +-+...+..+... +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11234444444444443 34666777776666543 2234444444333 233455566666666665542 233
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
..++..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...|++..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4444444433333 24555666666665542 13345556666666677777777777776666654 4445555
Q ss_pred HHHHHHH
Q 007193 273 TIAINCC 279 (613)
Q Consensus 273 ~~li~~~ 279 (613)
..+...|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-14 Score=145.14 Aligned_cols=210 Identities=10% Similarity=-0.035 Sum_probs=148.3
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-------C--
Q 007193 30 HSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-- 89 (613)
Q Consensus 30 ~~~~~l~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-- 89 (613)
..||.|. ..|++++|++.|++..+. ...+.....+..++.++...|++++|...|++.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455443 789999999999886542 1124455566778888889999999998887542 1
Q ss_pred --CCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCCH
Q 007193 90 --PTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 90 --~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (613)
....+++.+..++.. .+++++|...|++..+.. +.++..+..+..+ +...++.++|++.+++..+.. +.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 234566665555544 457999999999998875 4456666555554 445678889999999887764 4466
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
.++..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+.+..... +.+..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHH
Confidence 667666655554 467889999999987763 4567788999999999999999999999988642 34456666
Q ss_pred HHHHHHH
Q 007193 239 ALMKACA 245 (613)
Q Consensus 239 ~ll~~~~ 245 (613)
.+...|.
T Consensus 286 ~lg~~y~ 292 (472)
T 4g1t_A 286 QIGCCYR 292 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-11 Score=136.11 Aligned_cols=313 Identities=12% Similarity=0.133 Sum_probs=233.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
...++..|.+++|..+|++... . .. . +..+....+++++|.++.+++. ++.+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~-~~-A---~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N-TS-A---VQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H-HH-H---HHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 4556688999999999988631 1 11 1 1112336678899999888774 467788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
...|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.... ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998553 467788889999999999999999998877653 4444444588889999888853333 22
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
.|+...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 446667777888899999999999999874 26888899999999999999988876 33478
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888899999988888766542 2255667788999999999999999998777654 4455566666666655
Q ss_pred --cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHHH
Q 007193 352 --AKNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 352 --~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
.+++.++.+.|..-.. ++| +...|..++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666666664332 222 46679999999999999998883
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=126.59 Aligned_cols=92 Identities=12% Similarity=-0.012 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
+..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433332 2233334444444444444444444444443321 1223344444444444
Q ss_pred CCChhHHHHHHHHH
Q 007193 387 GDQLPKTMEVLSDM 400 (613)
Q Consensus 387 ~g~~~~A~~l~~~m 400 (613)
.|++++|.+.+++.
T Consensus 220 ~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 220 VKEYASALETLDAA 233 (258)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=126.49 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (613)
..|..+...+...|++++|...|+.+.+.. .+..++..+...+...|++++|.+.|++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445566666667777777777777766665 5566666666777777777777777766654310 011 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.+...|.+.|++++|...|++.... .|+. ..+...|++++|.+.++.+... .+.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 6666666666666666666666653 3332 2233445556666666665542 12223445555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|++++|...|++..+.. +.+..+|..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666665555543 334455555555555555555555555555544321 344455555555555555555555
Q ss_pred HHHHHH
Q 007193 327 LQEAKN 332 (613)
Q Consensus 327 ~~~~~~ 332 (613)
++...+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-13 Score=138.16 Aligned_cols=344 Identities=11% Similarity=0.017 Sum_probs=204.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHH---HHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (613)
...-..+.+.|++++|.++|++..+.|.. ... ..++.++...|+. ++|+..|++....++..+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 44556677899999999999999887732 211 1233334445656 8999999887665777777777755555
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 106 K-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 106 ~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+ ++++|+..|+...+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 67889999988888763 33 5666777776665443 3455555555443 34566677777777775
Q ss_pred HHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---
Q 007193 178 VAKAF----GAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (613)
Q Consensus 178 ~~~A~----~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (613)
++++. .+++..... .|+ .+..|...|...| +.++|.+.|.+....+ +++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGS
T ss_pred cccCHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCC
Confidence 44443 334333322 233 6667777777788 7888888888877642 44555445666666544
Q ss_pred -CChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 007193 248 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----- 318 (613)
Q Consensus 248 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----- 318 (613)
+++++|...|++.. .+ ++..+..+... | ...+++++|++.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 67888888888776 33 34666666666 3 45778888888888887776 4556666666665 44
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (613)
++++|...|.... . -++..+..|...|.. ..+.++|...|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7788888877766 3 355666666666665 337777888887777654 23334445545543 3456
Q ss_pred hHHHHHHHHHHhCC
Q 007193 391 PKTMEVLSDMKSLG 404 (613)
Q Consensus 391 ~~A~~l~~~m~~~g 404 (613)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 67777776666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-13 Score=122.82 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
+..+...+...|++++|...|++..+.. .+...+..+...|...|++++|...|++.
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333344444444443333333 23333333333344444444444444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-13 Score=123.18 Aligned_cols=199 Identities=13% Similarity=-0.055 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 311 (613)
++...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 445566666666777777777777777776655 555666777777777777777777777777665433 556666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 312 DFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 312 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
..+... |++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 667776 99999999999988875 4567888899999999999999999999998876 788899999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999988752 3367788888899999999999999888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-12 Score=118.18 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777888888888888888877664 4467777777778888888888888887776653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+.+..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777778888887777776632334 34456666677777777777777777766531 23456666667777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766654 445566666677777777777777777776665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=113.88 Aligned_cols=201 Identities=10% Similarity=-0.020 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
++..|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455556666666666666666666666543 3445566666666666666666666666665543 334555666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 171 GCAKA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 171 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
.+... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...+.++.... +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcC
Confidence 66666 666666666666655222222 3445555555666666666666666555421 223445555555555566
Q ss_pred ChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
++++|...++.+.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665555443 2 3444555555555555555555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-12 Score=114.43 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|++..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666677777777777777666543 3345666666666677777777777776666542 334556666666
Q ss_pred HHHcc-CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 206 ACGQS-GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 206 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
.+... |++++|...++++... +..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 66666 6666666666666541 1122 24455555666666666666666666665543 334555666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666655543212444455555555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-11 Score=115.79 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (613)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777788888888888888877653 4466777777788888888888888888777653 3356677777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
+...|++++|.+.++++... +..| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhC--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77788888888888777651 1233 34566666677777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
++|...++++.+... .+...+..+...+...|+.++|...++.+.+.
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777666543 24555666666666677777777777766655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-12 Score=124.68 Aligned_cols=247 Identities=10% Similarity=0.065 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
...|+.+...+.+.|++++|+..++.+.+.. +-+..+|+.+..++...|+ +++|++.|++..+.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777888888888888888888765 4567778888888888886 888888888887764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~ 249 (613)
.+.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887653 3456777777778888888888888888877642 3456677777777777 555
Q ss_pred hHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007193 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (613)
Q Consensus 250 ~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---- 318 (613)
.++| ...|++....+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4666 46677776655 455667777777777766 467777777776 332 225566666666666653
Q ss_pred -----CHHHHHHHHHHH-HHCCCCcCHHhHHHHHHH
Q 007193 319 -----KVEAAFEILQEA-KNQGISVGIISYSSLMGA 348 (613)
Q Consensus 319 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~ 348 (613)
..++|..+++.+ .+.. +.....|..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246677777766 4432 3333444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=127.17 Aligned_cols=216 Identities=11% Similarity=-0.030 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007193 75 KAIKEAFRFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 75 ~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+++++|+..|+++.. .+..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555544321 134456666666777777777777777776654 445666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (613)
+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 7777766653 335566667777777777777777777776654 3333333334444455566667766665554421
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+++...+ .++..+...++.++|...+......... .+..++..+...|.+.|++++|...|++....
T Consensus 175 ---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 ---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp ---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2232232 2445555556666666666555433210 01345555666666666666666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-12 Score=119.29 Aligned_cols=159 Identities=12% Similarity=-0.010 Sum_probs=64.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccC
Q 007193 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSG 211 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g 211 (613)
...+...|++++|.+.|++..+.. +.+..++..+...|...|++++|+..|++..+.+..|+ ..+|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444332 12223444444444444444444444444443211111 122344444444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.+.
T Consensus 89 ~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp CHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443321 1223344444444444444444444444444332 22333444443122222344444444
Q ss_pred HHHHHH
Q 007193 292 YDDMTK 297 (613)
Q Consensus 292 ~~~m~~ 297 (613)
|+++.+
T Consensus 165 ~~~a~~ 170 (272)
T 3u4t_A 165 FVKVLE 170 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-12 Score=120.15 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++.............++..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445556666677777777777666542 223335566666666667777777666666542100011123355566666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 324 (613)
...|++++|...|++..+.+ +.+..+|..+...|...|++++|...|++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 334456666666666666666666666665554222 3444444442233334556666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHcCCChhHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LKPT------VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 394 (613)
..++.+.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6655555543 2234444445555555454 444554444443210 0011 133444444555555555555
Q ss_pred HHHHHHHh
Q 007193 395 EVLSDMKS 402 (613)
Q Consensus 395 ~l~~~m~~ 402 (613)
+.|++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=120.60 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45566666777777788888888888777653 4467777777777788888888888887777653 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 7777788888888777776653 345666777777777777777777777776653 133556666677777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777776654 4456667777777777777777777777776653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-10 Score=111.00 Aligned_cols=222 Identities=12% Similarity=-0.001 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++.... .+...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 3344444444444555555555555444421 23344444444444 45555555555444432 133444
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 238 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444444444 555555555555544433 33444555555554 555555555555555443 2334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 310 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444 455555555555554443 23444445555555 555555555555555432 244444455
Q ss_pred HHHHc----CCChhHHHHHHHHHHhC
Q 007193 382 TALCD----GDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 382 ~~~~~----~g~~~~A~~l~~~m~~~ 403 (613)
..|.+ .+++++|.+.|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555 55555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=124.40 Aligned_cols=222 Identities=11% Similarity=-0.011 Sum_probs=137.5
Q ss_pred cCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 104 SSKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677788888887776531 1135567777777778888888888888777654 3456777777777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
|...|++..+.. +.+..++..+...+...|++++|...|+++... .|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888887777652 334566777777777777777777777777653 344333334444455567777777777666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.... +++...+. ++..+...++.++|...+.......... +...+..+...|.+.|++++|...++...+.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5543 33333333 5555566666666666666654432110 1244455555555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.7e-11 Score=111.65 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
+..++..+...+...|++++|.+.|.+... +.+...+..+...|.. .+++++|...|++..+.+ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888899999999999999999886 2356778888899999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 007193 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (613)
Q Consensus 272 ~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (613)
+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999999 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 99999999999999875 357788889999999 999999999999998864 36677778
Q ss_pred HHHHhh----cCCHHHHHHHHHHHHHcC
Q 007193 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~m~~~g 439 (613)
...+.. .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=123.54 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+...+...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777788888899999999998888764 4467788888888888886 999999998888763 346778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 007193 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (613)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|...|+++.+.+ +.+...|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887642 4467788888888888888888888888888876 5677888888888888 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC----
Q 007193 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (613)
Q Consensus 285 ~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (613)
.++| +..|++....... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4777777765443 5667777777777766 577777777776 32 3455667777777777763
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007193 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (613)
..++|.++|+++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 4432 12344555555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-12 Score=119.19 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.++++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 33333334444444444444444333321 12233444444444444444444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-12 Score=127.95 Aligned_cols=342 Identities=11% Similarity=-0.020 Sum_probs=231.9
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (613)
+.....+.|++++|+++|.+.. ..++..+..+...+...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4455677899999999998764 23455666666777778888 8999999988854 5556666766555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---
Q 007193 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSG--- 211 (613)
Q Consensus 142 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 211 (613)
++++|.+.|++..+.|. + ..+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998762 2 36777888887765543 4555565555555 2345556666777666
Q ss_pred -CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 007193 212 -AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (613)
Q Consensus 212 -~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (613)
..+.+..++...... .|+ .+..|...|...| +.++|.+.|++..+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 455566666655432 344 7788888899999 8999999999999988 66666667788877665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-----CH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (613)
++++|++.|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44555666555 3 46899999999999999887 6777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (613)
++|...|++.. ..+...+..|...|.. ..++++|.+.|++..+.|. |+. ...+...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3567777788877776 3489999999999988763 333 3344444442 568999
Q ss_pred HHHHHHHHHHcCC
Q 007193 428 GLMLLSQAKEDGV 440 (613)
Q Consensus 428 a~~~~~~m~~~g~ 440 (613)
|..+++...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-09 Score=113.59 Aligned_cols=404 Identities=8% Similarity=0.010 Sum_probs=267.1
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH---HHHHHHHHHhCC-----CCCHHHH
Q 007193 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (613)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (613)
+..+|..|+ +.+.++.|+.+|+++...- |....++...+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666665 5789999999999999875 6666666667777777788 999999999754 2788899
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 007193 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 96 ~~li~~~~~~~~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~ 155 (613)
..-+.-..+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766554443 334577776554 465 44 4678888777654 23457788999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 007193 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p-----~---~ 197 (613)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222122344322211111 1123445555544321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCCH
Q 007193 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (613)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 269 (613)
..|...+.---..+ ..+.+..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444322222 123455678777753 3446677777788888888888886 999888764 36677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
..|-..+...-+.|+++.|.++|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888899999999999998875310 132 2357777777778888999999999
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
...+........+|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 988761122233444333333444 4489999999988765 34567777888888888899999999999988753212
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
....|...+.--.+.|+.+.+.++.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888888899999999999999874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=125.39 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-C
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~ 161 (613)
....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...|++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455556666777777777777777777653 223 245666777777777777777777765432 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a 216 (613)
..++..+...|...|++++|...+++...... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566666777777777777777766653200 011 2345555566666666 5555
Q ss_pred HHHHHHHhhCCCCC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 007193 217 FDVLAEMNAEVHPV--D-PDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 217 ~~~~~~m~~~~~~~--~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a 288 (613)
.+.+.+........ . ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 55555433210000 0 0122344444555555555555555544432210 000 12344444444455555555
Q ss_pred HHHHHHH
Q 007193 289 CSVYDDM 295 (613)
Q Consensus 289 ~~~~~~m 295 (613)
...+++.
T Consensus 247 ~~~~~~a 253 (406)
T 3sf4_A 247 SEYYKKT 253 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=103.86 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
..+|..+...|.+.|++++|.+.|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555555555555555555555544 344555555555555555555555555555544322 34444444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3344455555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHHh
Q 007193 394 MEVLSDMKS 402 (613)
Q Consensus 394 ~~l~~~m~~ 402 (613)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-11 Score=123.76 Aligned_cols=281 Identities=15% Similarity=0.027 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 195 (613)
.+....+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667777778888888888888877653 222 246677777777888888888877765432 1111
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCC--------------------h
Q 007193 196 D-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQ--------------------V 250 (613)
Q Consensus 196 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~ 250 (613)
. ..++..+...+...|++++|...+.+....... .++ ..++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 335556666677777777777776665432100 011 2244455555555555 5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
++|...+++..+.. ...+..| ...++..+...+...|++++|...+.+
T Consensus 164 ~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555544432210 0011000 122344444455555555555555554
Q ss_pred HHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 330 AKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 330 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
..+. +. .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4332 10 00122555666666667777777666666543110 011 44666777777777888888777777
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+. +-.+ ...++..+...+...|++++|...+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 1111 144666777788888888888888887664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-10 Score=106.75 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (613)
++|..+|+...+.. +.++..|..+...+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56666776666543 4456666666665543 3554 666666666665 22 234456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-hcCCh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (613)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +++...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 666666666666666653 332 22 56666666666666666666666665431 122233322222211 24566
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666555543 3345555555665666666666666666655542 222 2344555555555555555555555
Q ss_pred HHHHHC
Q 007193 328 QEAKNQ 333 (613)
Q Consensus 328 ~~~~~~ 333 (613)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-09 Score=106.20 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007193 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666666543 1334555555555544 34665 77888888877731144566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH-hcCCHHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (613)
.+.|++++|..+|++..+..+. +.. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775322 232 67777777888888888888888887764 334455544433322 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887643 3467888889999999999999999999988853 455 456788888888889999999999998
Q ss_pred HHHc
Q 007193 435 AKED 438 (613)
Q Consensus 435 m~~~ 438 (613)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=123.31 Aligned_cols=277 Identities=15% Similarity=0.018 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVV 199 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 199 (613)
.+..+...+...|++++|.+.|++..+.+ +.+. .+|..+...|...|++++|...|++..+. +- +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 33444555666666666666666666542 1122 34555666666666666666666655432 10 111223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007193 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
+..+...|...|++++|...+.+........ .+ .+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~-------------------------------~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-GD-------------------------------RLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hc-------------------------------hHHHHHHHHHHHHHH
Confidence 4444444455555555555554443210000 00 011123445555555
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 007193 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (613)
Q Consensus 280 ~~~g~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 335 (613)
...|+ +++|++.+.+..+. +..+ ...++..+...+...|++++|...+.+..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554321 1111 123556666677777777777777776654310
Q ss_pred ---CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 007193 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (613)
Q Consensus 336 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (613)
.....++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677788888888999988888887654210 01 1467778888899999999999999887652
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+-.+ ...++..+...+...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346778888999999999999999998863
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=124.35 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=145.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 164 (613)
.+..+...+...|++++|...|+.+.+.+ +.+. .++..+...|...|++++|.+.|++..+. +- +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44456677889999999999999998874 3343 47888889999999999999999887643 11 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 222 (613)
+..+...|...|++++|...|++.... +- +....++..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999887643 11 1123466677777888888 7777777666
Q ss_pred HhhCCC--CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 223 MNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 223 m~~~~~--~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
...... +. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 532100 00 011234555666666667777766666655432100 01 12455555566666666666666655
Q ss_pred HHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 295 MTKKGVI-P----DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 295 m~~~g~~-p----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
....... . ...++..+...+...|++++|...+++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4432100 0 0233444444444455555555444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=102.65 Aligned_cols=172 Identities=16% Similarity=0.057 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
++.+|..+...|.+.|++++|++.|++..+..+. +...+..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678999999999999999999999999987654 77889999999999999999999999998875 556778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988754 4568889999999999999999999999998852 3467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 007193 428 GLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~ 445 (613)
|.+.|++.++ +.|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 9999999987 456543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=118.08 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555555555544331 0000 123444555556666666666666665554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-08 Score=105.47 Aligned_cols=393 Identities=12% Similarity=0.052 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC---hHHHHHH
Q 007193 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (613)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~ 114 (613)
..+-+..|++-...+ |.+...+..++..+.+.+.++.|..+|+++. +.....|..-+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344566778777777 7788888888888888888999999998764 5677889988988888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 007193 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (613)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (613)
|++..... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 248898998888877666654 334578877553 465 45 3568888776543
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------ccCCHHHHHHHHHHHhhCCCCC----C-----
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~----------~~g~~~~a~~~~~~m~~~~~~~----~----- 231 (613)
..++++.+..+|++.+......-..+|.. +-.... ...+++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34457889999999986422212234422 222110 0112334455554432110111 1
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 007193 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (613)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~- 289 (613)
| + ...|...+..--..+ ..+.+..+|++..... +.....|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134444444322222 1234566788887763 667889999999888999999996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------CHHhHHHHHHH
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (613)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988743 33666677788888899999999999999876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 007193 349 CSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (613)
..+.|..+.|..+|.+..+. + ......|...+..-.+. ++.+.|.++|+...+. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999875 2 12334444333333344 4589999999998875 3446666778888888899999
Q ss_pred HHHHHHHHHHHcC
Q 007193 427 VGLMLLSQAKEDG 439 (613)
Q Consensus 427 ~a~~~~~~m~~~g 439 (613)
.|+.+|++.++..
T Consensus 522 ~AR~lferal~~~ 534 (679)
T 4e6h_A 522 QVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-11 Score=117.79 Aligned_cols=201 Identities=15% Similarity=0.095 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 164 (613)
.+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++.... +- +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444566777888888888888887764 223 356777777888888888888887775432 11 112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDV 219 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 219 (613)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777778888888888888777654210 111 2255566666666666 6666666
Q ss_pred HHHHhhCCC--C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 220 LAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KG----TPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 220 ~~~m~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
+.+...... + ......++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555432100 0 000122344445555555555555555554432210 00 012344444445555555555555
Q ss_pred HHHH
Q 007193 292 YDDM 295 (613)
Q Consensus 292 ~~~m 295 (613)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-10 Score=114.09 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=144.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCHHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYTI 274 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~ 274 (613)
...+...|++++|...|.+........+. ...++..+...|...|+++.|...+++..+... +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455666666666666666542111111 124556666667777777777777766544210 011345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHhHHH
Q 007193 275 AINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSS 344 (613)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 344 (613)
+...|...|++++|.+.|.+..+.... ++ ..++..+...|...|++++|...+.+..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777777778888777777776542110 11 135667777788888888888888777652 22 334566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007193 345 LMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll 416 (613)
+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ .++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888776542 111112335567777778887 66777777655 22333 34566777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 007193 417 VACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888999998888887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=115.90 Aligned_cols=296 Identities=9% Similarity=-0.003 Sum_probs=198.8
Q ss_pred HHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH--HHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEA--GLKAD--CKLYTTLITTC--AKSGKVDAMF-----------EVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~g~~~~~~~ 164 (613)
+.+.+++++|..+++++.+. .+..| ...|-.++..- .-.+.++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34567788888877777653 22233 33333333221 1223333333 566665432 111111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--
Q 007193 165 ------YGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (613)
Q Consensus 165 ------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-- 231 (613)
+......+...|++++|...|++.... +-.+ ...++..+...|...|++++|...+.+.........
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222555677889999999999988753 1111 235677888889999999999998888764211111
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC
Q 007193 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTK-----KG 299 (613)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g 299 (613)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11356778888999999999999999877653111 11 24788899999999999999999998876 32
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 007193 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKP 372 (613)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~ 372 (613)
......++..+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.. ..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence 1224567888889999999999999999887654 212223345677888888898 777888777663 223
Q ss_pred C-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 373 T-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 373 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 34677888999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=120.43 Aligned_cols=199 Identities=11% Similarity=-0.061 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 239 (613)
+...+..+...|...|++ ++|+..|++..+.. +-+...|..+...|...|++++|.+.|++.... .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCHHHHHH
Confidence 344444444444445555 55555554444431 222444445555555555555555555554432 334444444
Q ss_pred HHHHHHhc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 007193 240 LMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVI- 301 (613)
Q Consensus 240 ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~- 301 (613)
+...|... |++++|...|++..+.. +.+...|..+...|... |++++|++.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 56666666666655554 44455666666666665 6667777777666664320
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 302 -PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 302 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
-+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.++.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 255666667777777777777777777766654 3455666777777777777777777666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=120.09 Aligned_cols=216 Identities=10% Similarity=-0.076 Sum_probs=182.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007193 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (613)
.+++++..+++..... +.+...+..+...+...|++ ++|.+.|++..... +.+...+..+...|.+.|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3567777787776542 34778888899999999999 99999999987642 3457789999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------G 318 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g 318 (613)
.|++..+.+ |+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 999998875 5578899999999999 9999999999999887544 678889999999888 9
Q ss_pred CHHHHHHHHHHHHHCCCC---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 319 KVEAAFEILQEAKNQGIS---VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
++++|...|++..+.. + .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 3 578899999999999999999999999988754 3457788889999999999999998
Q ss_pred HHHHHH
Q 007193 396 VLSDMK 401 (613)
Q Consensus 396 l~~~m~ 401 (613)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 776653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=119.19 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 158 (613)
..++..+...+...|++++|...++.+.+. ..+....++..+...|...|++++|.+.|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555566666666666666666665542 11223344555555555556666666555555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
+....++..+...|...|++++|...|++..+.. ..... ...+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~--~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG--KDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC--TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC--CCChHHHHHH
Confidence 1123344444444555555555555554443210 00000 0001122334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
..+...+...|++++|...|+++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555554432 1 011233455566666666666666666665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=109.98 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~ 264 (613)
+..++..+...+...|++++|..+++++..... ..+....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788888999999999999999999876200 11233566788889999999999999999988664 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007193 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (613)
Q Consensus 265 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 333 (613)
.+....++..+...|...|++++|.+.|++..+. +..| ....+..+...+...|++++|...++.+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567888999999999999999999998764 2222 3456778888999999999999999998764
Q ss_pred ---C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHHcCCChhHHHH
Q 007193 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPT-------VSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 334 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 395 (613)
+ .+....++..+...|...|++++|...|+++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 2234557888999999999999999999988752 11111 1223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+....... +.+..++..+..+|.+.|++++|..++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766531 23456788889999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-09 Score=102.57 Aligned_cols=266 Identities=11% Similarity=-0.045 Sum_probs=150.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~ 242 (613)
.+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 3334444555556666666665554331100 111 122344555
Q ss_pred HHHhcCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALI 311 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~li 311 (613)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777766655432 111 1 1234555666677777777777777776543211 1 234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (613)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777777888888877777654311111 11111 23344667888888888887776533211 1234566777
Q ss_pred HHHcCCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 383 ALCDGDQLPKTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888876542 222222 2555666778888999999988887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-09 Score=103.08 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=159.7
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC----CCHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVYT 273 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~ 273 (613)
...+...|++++|...|.+........ ++ ..++..+...|...|+++.|...+++..+.. .. ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344567788888888888776432111 22 3456677778888888888888887765431 11 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHhHH
Q 007193 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (613)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 343 (613)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8888888899999998888876642 1111 124677778888889999999999988876 43 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007193 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (613)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999998876531 11223456666667777787 77777777652 22333 3456677
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 007193 416 LVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-09 Score=94.60 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=7.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 007193 414 ILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~ 434 (613)
.+...+...|++++|...+++
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-08 Score=101.37 Aligned_cols=267 Identities=12% Similarity=0.042 Sum_probs=140.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li 169 (613)
...+...|++++|...++.........+.. +++.+...+...|++++|.+.+++.....- .++ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566778888888887776653222222 455566677777888888877777653210 111 12345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~l 240 (613)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+.+.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6777778888887777776542 211 22 234455666677777777777777766542111111 12345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALI 311 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li 311 (613)
...+...|++++|...+++.....-.+ ....+. ..+..+...|++++|...+.+.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666667777777777776654431111 111111 122335566666666666666544322111 12334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQ----GISVGI-ISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
..+...|++++|...++..... +..++. ..+..+...+...|+.++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555655555555554322 111111 13333444444555555555554444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-09 Score=92.47 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333334444444444443333332 2223333333333444444444444443333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-09 Score=103.75 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=163.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---C-CHHHHH
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---P-DHITIG 238 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~-~~~~~~ 238 (613)
....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+.+......... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678889999998888865310 122 34667777888888999888888877654211111 1 244677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 308 (613)
.+...|...|++++|.+.|++..+. +-+ ....++..+...|...|++++|.+.|++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888889999999999988877553 111 1134677888889999999999999988876 4333 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNAL 380 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l 380 (613)
.+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...++... ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 88889999999999999999887642 12223455666667777787 777777777632 1222 3456678
Q ss_pred HHHHHcCCChhHHHHHHHHHHh
Q 007193 381 ITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~ 402 (613)
...|.+.|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-09 Score=113.68 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
..+++.|...|.+.|++++|.+.|++..+.+ +.+..+|+.+...|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777776664 445667777777777777777777777777665433 45667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+.+.|++++|.+.|++..+.. +-+...++.+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776654 4456677777777777777777777777776643 23466777777777777777777
Q ss_pred HHHHHHHHh
Q 007193 394 MEVLSDMKS 402 (613)
Q Consensus 394 ~~l~~~m~~ 402 (613)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=93.21 Aligned_cols=191 Identities=16% Similarity=0.077 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.|++..+..+. +...+..+...+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4444444555555555555555555554442244444444555555555555555555555544322 334455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITAL 384 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~ 384 (613)
...|++++|...++...+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...|..+...|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 55555555555555555442 2222 23455555556666666666666666553 233 34445555554
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
... +...++++...+ ..+...|.... ....+.+++|...+++..+
T Consensus 164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 332 223334443332 22333333322 2234456666666666665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-08 Score=91.37 Aligned_cols=197 Identities=9% Similarity=-0.003 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.|+..|......+...|++++|...|+...+...+++...+..+..++...|++++|.+.|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677777788888888999999988888877633677777778888888899999999888888764 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ 239 (613)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|++.... .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 88888899999999888887752 2234 44666777788888999999999888753 444 455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
+...|...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+..+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 666665443 34455554443 23344444333 2344667889988888887643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-09 Score=111.29 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+..+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677778888888888888888888877764 4457778888888888888888888888877663 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +.+...+..+...|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877652 3346677778888888888888888888776531 23466777778888888888
Q ss_pred HHHHHHHHHHHh
Q 007193 251 DRAREVYKMIHK 262 (613)
Q Consensus 251 ~~A~~~~~~~~~ 262 (613)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-09 Score=100.00 Aligned_cols=158 Identities=11% Similarity=0.075 Sum_probs=76.7
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALI 204 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 204 (613)
..|++++|...|++..+. ..+....++..+...|...|++++|...|++.... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666554431 11223455666666677777777777777666542 1112 233455555
Q ss_pred HHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHH
Q 007193 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 272 (613)
..|...|++++|.+.+.+..... ...+....++..+...|...|++++|...|++..+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666666666666666554310 000112334444445555555555555555544332 0 01112334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=101.21 Aligned_cols=229 Identities=12% Similarity=0.015 Sum_probs=153.5
Q ss_pred ccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-CCCHHHHHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAI 276 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li 276 (613)
..|++++|...+++..... ...+....++..+...|...|++++|...++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4455555555555543310 011223567888889999999999999999988754 21 22356788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHhH
Q 007193 277 NCCSQTGDWEFACSVYDDMTKK-----GV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIISY 342 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~ 342 (613)
..|...|++++|.+.|.+.... +. .| ...++..+...|...|++++|...+.+..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 12 3567888888999999999999999998765 1 22345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--h-CC-CCC-CH
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK--S-LG-LCP-NT 409 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-~g-~~p-~~ 409 (613)
..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+....+..+..... + .+ ..| ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999988752 1112 22344444444444444333332221111 1 11 112 34
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.++..+...+...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677888999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-08 Score=80.18 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...+..+.+.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 334444444444444444444444433221 33334444444444444444444444444332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443322 1233444444444444444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-08 Score=93.94 Aligned_cols=131 Identities=10% Similarity=-0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----H
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNI---KG--TPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIP-D----E 304 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~----~ 304 (613)
+++.+...|.+.|++++|...|++..+... .+ ...+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444445555555444444332110 00 012344555555553 55555555555544321000 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.++..+...+.+.|++++|...|+...+....... ..+..+..++...|++++|...|++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23444444555555555555555555443211111 023444444445555555555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-08 Score=79.47 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555555443 3344455555555555555555555555555432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
.|++++|...++++.... +.+..++..+...+...|++++|.+.+.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554432 2234444445555555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=89.81 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 34444444555555666666666666655544331 1244455555556666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--ccC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 190 SKNVKP-----DRVVFNALITACG--QSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
+. .| +..+...|..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 34 1333333443322 122 555566666665432 233222233333555556666666555544
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3320 02234444334333333444 455555555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-06 Score=89.83 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=57.2
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCC-hHHHHH
Q 007193 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (613)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~ 113 (613)
.| +++.|+.+|+.+...- |. ++++.+..+|++.. .|++..|...++-..+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666677776665532 21 44667777776643 3577777776666555442 344566
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHC
Q 007193 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~ 156 (613)
+|+..... |. +.+...|...+..+. ..++++.+.++|+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 66666543 32 335666766666543 235667777788777763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-08 Score=92.87 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (613)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477787777765 33577889999999998877553 2111 1457888999999999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-C----HHhHHHHHHHHHhcCCH
Q 007193 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (613)
+|+..+++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999887653110 01 34677888888885 99999999888876542100 1 34677888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--h
Q 007193 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~--~ 421 (613)
++|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999988775422221 1567777788888999999999888765 344321 2444555554 4
Q ss_pred cCCHHHHHHHHHHHHH
Q 007193 422 KDDVEVGLMLLSQAKE 437 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~ 437 (613)
.+++++|...|+++.+
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5667788777766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=88.65 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (613)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+...|.+.|++++|+..|++..+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555555666666666666666665542 112 44555566666666666666666666655411 111 2344
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhh
Q 007193 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (613)
Q Consensus 201 ~~li~~~~~--------~g~~~~a~~~~~~m~~ 225 (613)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 445555555 5666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-06 Score=81.37 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-----DEVF 306 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~ 306 (613)
+..++..+..++...|++++|++++.+....+- ..+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 333334455555555555555555555544331 123445555555555666666666666555543 23 1333
Q ss_pred HHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C----CCCC
Q 007193 307 LSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----K----LKPT 373 (613)
Q Consensus 307 ~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~ 373 (613)
...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. + -+.|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 333443322 122 555566666655443 233222233333555566666666665544321 0 0123
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
..+...+|......|+ +|.++++++.+
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 4444333333333443 55555655555
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.9e-07 Score=84.13 Aligned_cols=237 Identities=8% Similarity=0.071 Sum_probs=125.5
Q ss_pred cccchhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH--HHHHHHHHHHhCC---CCCHHH
Q 007193 21 YAHDVSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLST 94 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~ 94 (613)
|+.........+..+++.|.+ ++|+++++.+...+ |...+....-..+....+ .+++++++++.+. +.+..+
T Consensus 28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 333334444445555555555 57888888888877 666555554445555555 6666666666543 344555
Q ss_pred HHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHH
Q 007193 95 FNMLMSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 95 ~~~li~~~----~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~ 165 (613)
|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|-..|
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW 183 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAW 183 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHH
Confidence 65544433 333 55666666666666554 445556665555556666665 6666666666554 3355566
Q ss_pred HHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCCCHHHHH
Q 007193 166 GALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 166 ~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
+.-...+.+.++ ++++++.++++.... +-|...|+-+-..+.+.|+... +..+..++......-+.+...+.
T Consensus 184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 655555444444 555555555555442 3345555555555544444222 22333333221000122344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...|.+.|+.++|.++++.+.+
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555555555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=85.55 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=130.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
..+..-..+++.|++++|+..|++..+.+ |.+...+.... ... .........+.+...+.+.|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHCC
Confidence 33444556779999999999999999876 55544332200 000 00112233455777888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~ 184 (613)
++++|...|+...+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|+ ...+...
T Consensus 69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999988875 5578888889999999999999999999988764 4467788888888766554 3455556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
+..... ..|....+..+..++...|++++|...|++... ..|+......+.+.
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 655542 123333344455566678899999999999875 36777666655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=85.14 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (613)
+..+|.+.|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3334444444444444444444332 2233444444444444444444444444444332 12234444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-07 Score=86.12 Aligned_cols=185 Identities=10% Similarity=0.006 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVF 306 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~ 306 (613)
.+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..+ .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566667777888888888888888887764 333 56777788888888888888888888877533 122 345
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 307 LSALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 307 ~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
+..+..++.. .|++++|...|+.+.+.. +.+......+.. +..+.. .-...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 5666666777 778888888888777653 222222222111 111110 0011245
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHc
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKED 438 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~ 438 (613)
.+...|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6778888999999999999998874 343 34566677777765 8889999999998874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-08 Score=84.15 Aligned_cols=161 Identities=11% Similarity=0.146 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--CCHHHHHHHHHH-H
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSV-C 102 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 102 (613)
......-..+.+.|++++|+..|++..+.. |.+...+..++.++...|++++|+..|+++.. |+...+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 344455556678888888888888877765 66666677777777777888888888877652 233333222211 1
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 181 (613)
...+....|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666553 3456666667777777777777777777766553111 244666666777777777777
Q ss_pred HHHHHHHH
Q 007193 182 FGAYGIMR 189 (613)
Q Consensus 182 ~~~~~~m~ 189 (613)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=102.25 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=111.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHc
Q 007193 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (613)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 46777888888887777 443 5555555566666667777777777777643 4466677777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++++|...|+...+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+...+.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777777777 77777776653 34566677777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 007193 185 YGIMRSKNVKPD-RVVFNALITACGQSG 211 (613)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g 211 (613)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7777654 344 445555555554433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=88.13 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHH-HHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM-SVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li-~~~~~~~~ 107 (613)
....+.+.|++++|...|++..+.. |.+...+..++.++...|++++|...|+++. .|+........ ..+.+.++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 3334445666666666666666655 5555555555556666666666666666554 23332222221 22444555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
.+.|...++...+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|...|+
T Consensus 201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555666665555543 444555566666666666666666666665554211 114455566666666666666655555
Q ss_pred HH
Q 007193 187 IM 188 (613)
Q Consensus 187 ~m 188 (613)
+.
T Consensus 280 ~a 281 (287)
T 3qou_A 280 RQ 281 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=80.57 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=106.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (613)
++.++.+.|++++|+..|.+..+. +...+..+...|.+.|++++|...|+...+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667788999999998876543 34566778888999999999999999988875 55788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (613)
++|...|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988764 34677888888889999988776655 47766542 3356667666666655553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-06 Score=78.04 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 186 (613)
|++.|+...+.| ++..+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+.+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45556666666666666666666666666543 45555556665655 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHh----cCChHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~A~~ 255 (613)
+..+.| +...+..|...|.. .+++++|.+.|.+.... .++ ...+..|...|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666544 44555555555555 56666666666666542 221 4555556666655 556666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 299 (613)
.|++..+. +.+...+..|...|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12234555555555432 2 5666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.9e-06 Score=77.51 Aligned_cols=217 Identities=8% Similarity=-0.016 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQV 178 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 178 (613)
.++|+.+++.+...+ +-+..+|+.--..+...+ +++++++.++.+.... +.+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345666666666553 334445555555555555 5666666666655543 33444454433333 333 455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC------h
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ------V 250 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~------~ 250 (613)
++++.+++++.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++++.... +.|...|+.-...+.+.+. +
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhH
Confidence 55555555555432 334445544444444444444 5555555554421 2344444443333333333 4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
+++.+.++.+...+ +.|...|+-+-..+.+.|+... +..+..++...+ -..+...+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44455554444443 3344445444444444444222 222333222211 0113344444444444444444444444
Q ss_pred HHHH
Q 007193 328 QEAK 331 (613)
Q Consensus 328 ~~~~ 331 (613)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=101.52 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=98.4
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44556666666665555 322 334455666666666666666666666666554332 45555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665553 3345556666666666666666 66666665543 23455666666666677777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 007193 397 LSDMKSLGLCPN-TITYSILLVACERKDD 424 (613)
Q Consensus 397 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 424 (613)
|++..+ +.|+ ...+..+..++...++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 666655 2454 3445455555544343
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-06 Score=77.76 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007193 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQ 328 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~ 328 (613)
|.+.|++..+.+ ++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 34455555555555556666666665555543 33444444444444 4 5666666666
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHH
Q 007193 329 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLSD 399 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~ 399 (613)
...+.+ ++..+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655544 34455555555554 56666666666666654310 014555566666665 5566667777666
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHcC
Q 007193 400 MKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 400 m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g 439 (613)
..+. .++...+..+-..|... | +.++|...+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6654 12333444444444432 2 6677777777666655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-07 Score=85.95 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555566666667777777777777666553 335556666667777777777777777766554 3443332222
Q ss_pred H-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHH
Q 007193 204 I-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCS 280 (613)
Q Consensus 204 i-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 280 (613)
. ..+...++.++|...+++.... -+.+...+..+...+...|++++|...|.++.+.+ +.+ ...+..++..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHH
Confidence 2 2344555556666666666543 13345666666677777777777777777766654 222 456677777777
Q ss_pred hcCCHHHHHHHHHHHH
Q 007193 281 QTGDWEFACSVYDDMT 296 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~ 296 (613)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 7777777766666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=81.57 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 316 (613)
..+...+.+.|++++|...|++..+.+ +.+...+..+...+...|++++|+..|+....... +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 334455666667777776666655543 44456666666666677777777776666554432 33222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHH
Q 007193 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
.+....|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455566555543 3345666666666666677777776666666543221 24456666666666666666666
Q ss_pred HHHHHH
Q 007193 396 VLSDMK 401 (613)
Q Consensus 396 l~~~m~ 401 (613)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=78.59 Aligned_cols=199 Identities=9% Similarity=-0.029 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----V 198 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 198 (613)
...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHH
Confidence 3445555666777788888888887777642 22 245666777777778888888887777664 2221 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (613)
.+..+..++...+.. .+. .+..+...+...|++++|...|+++.+.. +.+...+.+....
T Consensus 80 a~~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l 139 (225)
T 2yhc_A 80 VMYMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH
Confidence 333333333332110 000 01111222233455666666666665543 2222222211100
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhcCCH
Q 007193 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNW 355 (613)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 355 (613)
. .+...+. .....+...|.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|+.
T Consensus 140 ~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 140 V----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp H----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred H----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCc
Confidence 0 0000000 011233445556666666666666666542 111 23455666666666666
Q ss_pred HHHHHHHHHHHhC
Q 007193 356 QKALELYEHMKSI 368 (613)
Q Consensus 356 ~~A~~~~~~m~~~ 368 (613)
++|.+.++.+...
T Consensus 201 ~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 201 AQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=79.69 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
...|++++|...+...... .|+ ...+..+...|.+.|++++|.+.|++..+.+ +.+..+|..+...|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3445555555555554321 121 2233345555555566666666665555544 444555555555555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI-LQEAKNQGISVGIISYSSLMGACSNAK 353 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (613)
+|+..|++..+..+. +...+..+...|.+.|+.++|... ++...+.. |-++.+|......+.+.|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666555555554322 344555555555555555444333 34444432 233444444444444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-06 Score=77.96 Aligned_cols=204 Identities=10% Similarity=-0.032 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-HHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIG 238 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~ 238 (613)
...+..+...+.+.|++++|...|+++...... |. ...+..+..++.+.|++++|...|+++....+ -.+.. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 444555666677777888888888777764211 11 24566667777777777777777777765421 11111 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+..+. +...+...... +
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~ 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H
Confidence 333333332210 11 11223334445678889999999998876432 22222211110 0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT----VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 394 (613)
.+...+ ......+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.
T Consensus 141 ------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 141 ------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp ------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 001111 0112356678899999999999999998753 43 256888999999999999999
Q ss_pred HHHHHHHhCC
Q 007193 395 EVLSDMKSLG 404 (613)
Q Consensus 395 ~l~~~m~~~g 404 (613)
+.++.+...+
T Consensus 205 ~~~~~l~~~~ 214 (225)
T 2yhc_A 205 KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhC
Confidence 9999988753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8.1e-07 Score=94.08 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
.|++++|.+.+++.... .+.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46778888888887653 13346777778888888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (613)
+.+++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776433 56777888888888888888888888887764 44567777888888888 88888888888877
Q ss_pred hCC
Q 007193 367 SIK 369 (613)
Q Consensus 367 ~~~ 369 (613)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=92.47 Aligned_cols=155 Identities=13% Similarity=0.022 Sum_probs=97.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776553 3356677777777777888888888887777653 33466777777777777888888877
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDWEFACSVYDDMT 296 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 296 (613)
+++..... +.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...+... |++++|.+.+++..
T Consensus 80 ~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 77776531 3345667777777777778888877777777664 44566777777777777 77777777777776
Q ss_pred HCCC
Q 007193 297 KKGV 300 (613)
Q Consensus 297 ~~g~ 300 (613)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 6543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-06 Score=75.68 Aligned_cols=125 Identities=15% Similarity=-0.004 Sum_probs=103.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 007193 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (613)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (613)
..++..+...|++++|+..|++..+++...|..+...+...|++++|...++...+.. +.+...+..+..+|...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556677889999999998888888889999999999999999999999988775 557788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 145 AMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
+|.+.|++..+.. +.+ ...+..+...|.+.|++++|...|++..+.
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999988753 222 267888888899999999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=83.91 Aligned_cols=229 Identities=12% Similarity=-0.013 Sum_probs=139.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 116 (613)
..|++++|.+++++..+... .. ++...+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45778888888887776431 10 01112456666665544 3456677788888887777
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP--NVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
+..+... .+ -..+|+.+...|.+.|++++|...|++..+. | .+ -..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6654310 11 1346777777888888888888888775532 2 11 13567777777777 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007193 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
++.... |-.+ ...+++.+...|.+.|++++|...|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 1100 135677777888888888888888877654211 11112 235566666777778888888888
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 007193 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8776 3211 11 12344455544 56676665553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00013 Score=75.17 Aligned_cols=354 Identities=8% Similarity=-0.024 Sum_probs=194.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH-HHHHHHHHHhCC------CCCHHHHHHHHHHHHc----C
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP------NPTLSTFNMLMSVCAS----S 105 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~ 105 (613)
-.|+++.|..+|++....- | +..++...+.+..+.++ .+....+|+... ..+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 5 44455555555544442 234455565422 3467888888876542 4
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (613)
++.+.+..+|++.... ++. ...|......- +......+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5688899999999873 322 12222222111 1111222222222211 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007193 184 AYGIMRSKNVKPDRVVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (613)
+++.+...--..+...|...+.--...+ ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222221000012234444333222110 023455666666542 233455666666666677777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (613)
|++.... +.+...|.... .....++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y~----~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYG----LVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHH----HHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHH----hhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777665 33433333221 11111111 1221110 0001 1245666666666778899999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234444443333333333 6899999999887642 2345567777887788899999999998872
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999998988774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-06 Score=82.40 Aligned_cols=224 Identities=15% Similarity=0.049 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 466777877777765431 110 0 11135666666666553 34566778888888
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007193 255 EVYKMIHKYNI---KG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPD--EVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 255 ~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~li~~~~~~g~~~~a~ 324 (613)
..|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88776644311 00 13467777788888888888888887765421 0111 2456666677767 8888888
Q ss_pred HHHHHHHHCCC----C-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007193 325 EILQEAKNQGI----S-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 325 ~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (613)
..|++..+... . ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877654311 0 01356777777888888888888888776542 11111 225556666777778888888
Q ss_pred HHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHH
Q 007193 395 EVLSDMKSLGLCPN------TITYSILLVACERKDDVEVGLM 430 (613)
Q Consensus 395 ~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~ 430 (613)
..|++.. . .|+ ......++.++ ..|+.+....
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888776 3 232 12233444444 4566555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.1e-05 Score=71.34 Aligned_cols=183 Identities=6% Similarity=-0.020 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
++.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344455556678888888888765 445667777777777777 4888888888888765 456777877766666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 174 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
+. + ++++++.+++++.+.. +.|-.+|+.-.-.+.+.+..+ ++++.++++.... +.|...|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 65 6 7788888888887653 446666665444444333333 6666776666531 3456666666666
Q ss_pred HHhcCC-------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007193 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (613)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (613)
+.+.+. ++++.+.+++....+ +.|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 666554 466666666666654 5566666665555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.5e-06 Score=66.69 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665543 3345556666666666666666666666655543 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-05 Score=71.09 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=61.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|...|++..+.+ +.+...|..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3444445555555555554432 2344455555555555555555555555554443 33444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 283 GDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 283 g~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555543211 0 1134445555555555555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00016 Score=69.60 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=128.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (613)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345578999999998875 446777888877777888 5999999999999874 45677888766666665 6 7889
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (613)
++++++.+... -+.|..+|+--.-.+.+.|.++ ++.+.++++.+.+ +.+...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999864 2456777776655555555555 8888888888876 5677788887777777775
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 285 ----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
++++++.+.+.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67788888887776554 66777666555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-05 Score=73.76 Aligned_cols=125 Identities=7% Similarity=0.000 Sum_probs=59.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIK-GTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSAL 310 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 310 (613)
+..+...|++++|..++++..+.... ++. ..+..+...+...+++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45556666666666666666553211 110 12223444555555666666666666553211 11 1235555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 311 IDFAGHAGKVEAAFEILQEAKNQ-----GISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555555555421 1011 1124444444555555555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-05 Score=73.74 Aligned_cols=162 Identities=6% Similarity=-0.081 Sum_probs=100.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 274 (613)
+..+...|++++|..++++..... ...|+.. .+..+...+...+++++|...|++..+.... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455666777777777777765431 1222211 2233555556666777777777777663221 11 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHhHH
Q 007193 275 AINCCSQTGDWEFACSVYDDMTK----K-GVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG-IISYS 343 (613)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 343 (613)
+...|...|++++|+..|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77778888888888888777663 1 11111 236677777888888888888888776542 21111 45677
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 007193 344 SLMGACSNAK-NWQKALELYEHMK 366 (613)
Q Consensus 344 ~li~~~~~~g-~~~~A~~~~~~m~ 366 (613)
.+..+|.+.| .+++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777788888 4578877777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-05 Score=69.14 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777766653 4456666667777777777777777777766553 33556666666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m 223 (613)
...|++++|...|++..+.. +.+...+.. +...+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777666542 223333322 223355556666666665544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=68.58 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+.+....... +...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444445555555555555544433 333444555555555555555555555554443221 33444444445555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.|++++|...+....+.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=64.13 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++...... +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 3333344444444444444444443332 223333444444444444444444444444332211 23333333344444
Q ss_pred cCCHHHHHHHHHHHH
Q 007193 317 AGKVEAAFEILQEAK 331 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~ 331 (613)
.|++++|...+..+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-05 Score=65.41 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+......+.+.|++++|++.|+...+.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777776654 4556677777777777777777777777766653 34566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|+..|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.6e-05 Score=70.89 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CCC--
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~-- 233 (613)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+........ .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667778888888888888777664211 11 123334455667778888888887766421111 111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP- 302 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p- 302 (613)
..+++.+...|...|++++|...|++..+. ..+.+ ..+++.+...|.+.|++++|+..+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346677777788888888888888776521 11111 146677777777777777777777766532 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007193 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (613)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (613)
-..+|..+...|...|+.++| ...++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 145566666677777777777 5555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=64.94 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
....|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++..+.+.. +...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCC
Confidence 3344444444444444444444433 333344444444444444444444444444433221 33334444444444444
Q ss_pred HHHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAKN 332 (613)
Q Consensus 320 ~~~a~~~~~~~~~ 332 (613)
+++|...|+...+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-06 Score=71.16 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44566777777888888888888888888765 5567788888888888888888888888887764 445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 197 (613)
+|.+.|++++|...|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888888888888888765 4554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.7e-05 Score=70.85 Aligned_cols=160 Identities=6% Similarity=-0.044 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFL 307 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~ 307 (613)
..+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|+..+.+...... .+. ..++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443211 11 1122233444455555555555555543211 111 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VST 376 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~ 376 (613)
+.+...|...|++++|...+.+..+ . +..+ ...+++.+...|.+.|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4555555555555555555554431 1 0000 1134444555555555555555555544321 00000 334
Q ss_pred HHHHHHHHHcCCChhHH-HHHHHH
Q 007193 377 MNALITALCDGDQLPKT-MEVLSD 399 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A-~~l~~~ 399 (613)
|..+...|.+.|++++| ...+++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444445555555554 333443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=82.06 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555666666666666666655543 334555666666666666666666666665554332 44555555556
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (613)
+...|++++|...|....+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-05 Score=65.01 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555566666666666666666665543 334555666666666666666666666666554322 44555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
+.+.|++++|...+....+.. +.+...+..+...+.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 666666666666666655543 2233344444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6e-05 Score=70.16 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=120.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 007193 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------- 161 (613)
..++...|.+.|....+.. +-....|+.+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888764 4456777766 3455555555555444444332 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-
Q 007193 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (613)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~- 233 (613)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 122344566677788888888888877765 344435555556777888888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667778888888888888887765433132 3456666777778888888888888887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=71.61 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=87.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (613)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3566777777777776654 4566777888888888888888888888776643 3456677777777 7788887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
|+..+++..+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887752 235667777888888889999999988888874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00028 Score=67.66 Aligned_cols=166 Identities=7% Similarity=-0.002 Sum_probs=101.1
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHHhCC---CCCHHHHHHHHHHH
Q 007193 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (613)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (613)
+.|.++ +|+++++.+...+ |.+.+....-..+....+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566665 7888888888877 6555544433333333222 566777766543 45666777666666
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 007193 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (613)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (613)
...+ .+++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 6666 3677777777777665 5566667666666666666 467777777777654 44666676665555544
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
+.++++++.+.+..... +-|...|+-+-..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33566666666665542 33555555443333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=82.70 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555543 3345555555556666666666666666555442 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (613)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666665555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=65.17 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666665543 3345555566666666666666666666655442 2335555555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (613)
+.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 666666666666666555442 223444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-05 Score=64.19 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=34.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+......... +...+..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCC
Confidence 3333444444444444444443332 223333444444444444444444444443332211 23333333333334444
Q ss_pred HHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAK 331 (613)
Q Consensus 320 ~~~a~~~~~~~~ 331 (613)
+++|...+....
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=65.70 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555566666666666666666665443 3345555556666666666666666666655542 234555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.+.+.|++++|...|++....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666655543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=72.53 Aligned_cols=118 Identities=8% Similarity=0.070 Sum_probs=60.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHH-HHcCCCh--H
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV-CASSKDS--E 109 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~~~~--~ 109 (613)
...|++++|+..|++..+.. |.+...+..++..+...|++++|...|++.. +.+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777776665 4444555555555555555555555555432 2344444444444 4455555 5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
+|...++.+.+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555555443 333444555555555555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-06 Score=72.78 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 413 SILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
..+...+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444444555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.4e-06 Score=73.72 Aligned_cols=98 Identities=18% Similarity=0.069 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-- 160 (613)
...++.+...+...|++++|...++...+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444555555555555555544431 111 11234444555555555555555555544321 1000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
...++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12234444455555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-05 Score=71.26 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=130.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 007193 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTKKGVIPD--------------- 303 (613)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 303 (613)
..++...|.+.|.++...+ +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777765 5556667666 3444444444444444433332 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 007193 304 -------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--- 373 (613)
Q Consensus 304 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 373 (613)
..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... |+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 1223345566777888999988888776654 33335566666888999999999999866542 32
Q ss_pred -HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007193 374 -VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 374 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (613)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 23567788889999999999999998875433254 235556667888999999999999999874 4655555555
Q ss_pred HH
Q 007193 451 IG 452 (613)
Q Consensus 451 i~ 452 (613)
.+
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-05 Score=59.26 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
+..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666666777776666666553 3455666666666666666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.3e-06 Score=68.98 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
.+.+.|++++|...|+.....+ +.+...|..+..+|...|++++|+..|++.
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333333333333332 223333333333333333333333333333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-05 Score=66.20 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
.|..+..+|...|++++|...|++..+.+ +.++..|..+..+|.+.|++++|...|++..
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444443333332 2223333333333333344444433333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-05 Score=61.77 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++..+.. +.+...|..+...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455566666777777777777777776654 4456677777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=6.4e-05 Score=73.39 Aligned_cols=87 Identities=10% Similarity=-0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
.+|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|+...+.. +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555566666666666666655554322 44555555555555566666665555555543 33444555555555
Q ss_pred HhcCCHHHH
Q 007193 350 SNAKNWQKA 358 (613)
Q Consensus 350 ~~~g~~~~A 358 (613)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=68.43 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445555556666666666666666666553 4455666666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (613)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.7e-05 Score=74.36 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
...+..+...|.+.|++++|+..|++.......... -..+.+..+- +.....+..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH--------HHHHHHHHHHHHH
Confidence 345666777777777777777777776654322110 0001111000 0113566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHH
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (613)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++...|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 345667777777777777777777777777664 34 45666677777777777777
Q ss_pred H-HHHHHHHHH
Q 007193 428 G-LMLLSQAKE 437 (613)
Q Consensus 428 a-~~~~~~m~~ 437 (613)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7 445565553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00012 Score=58.29 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=4.3
Q ss_pred cCChHHHHHHHH
Q 007193 247 AGQVDRAREVYK 258 (613)
Q Consensus 247 ~g~~~~A~~~~~ 258 (613)
.|++++|...|+
T Consensus 17 ~~~~~~A~~~~~ 28 (118)
T 1elw_A 17 VGNIDDALQCYS 28 (118)
T ss_dssp TTCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 333333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-05 Score=60.14 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 168 (613)
+...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455555566666666666666666666543 3345555566666666666666666666665542 22 35555556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 007193 169 IDGCAKA-GQVAKAFGAYGIMRSK 191 (613)
Q Consensus 169 i~~~~~~-g~~~~A~~~~~~m~~~ 191 (613)
...+.+. |++++|.+.|++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0053 Score=58.78 Aligned_cols=188 Identities=4% Similarity=-0.056 Sum_probs=105.7
Q ss_pred cCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 104 SSKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 104 ~~~~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
+.|.++ +|+.+++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344443 6677777776543 3334445443333332222 456666666666543 44666666666666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc--
Q 007193 173 AKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (613)
Q Consensus 173 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (613)
.+.+ .+++++.+++++.+.. +-|-.+|+.-.-.+...|. .+++++.++.+.... +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhh
Confidence 6666 3667777777776653 3455666655555555565 466777766666531 34555565554444443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 007193 248 ------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (613)
Q Consensus 248 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 298 (613)
+.++++.+.+......+ +.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33566777776666655 55666666554444443 2355666666666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.4e-05 Score=60.85 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..+..+..+|.+.|++++|...|++..+.. +.+...|..+..++...|++++|++.|++.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333333334444444444444444333321 122333333444444444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=71.93 Aligned_cols=137 Identities=9% Similarity=-0.076 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHH
Q 007193 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTLI 134 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li 134 (613)
.+.+++|.+.++.... .....+..+...+...|++++|...|+...+.. +.+. .++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3455555555543221 133456666667777788888888887777642 1111 4455555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (613)
.+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 55555556666655555555442 2344555555555555555555555555554431 22333444444444443333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.1e-05 Score=62.06 Aligned_cols=104 Identities=11% Similarity=0.186 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHH
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ 414 (613)
.+..+...+.+.|++++|...|++..+.. +.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777766543 3346667777777777777777777777665421 1111 134555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 447 (613)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777777777777777777653 3554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.9e-05 Score=61.27 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~ 166 (613)
..+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.|++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777778888888777777664 4456777777777777788877777777765431 0111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
.+...+...|++++|++.|++.... .||....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6666677777777777777776653 4454433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.2e-05 Score=63.43 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344445555666667777777776666554 4456666666666666677777766666666553 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.6e-05 Score=62.17 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (613)
..|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777888887777777654 44666777777777777777777777777665421 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
.+...|.+.|++++|...|++..+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6777777777777777777777664 3454444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.3e-05 Score=62.49 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334445555555555555555555543 344555555555555555555555555555554332 33444555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00012 Score=60.34 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.+...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555555666666666666666666655543 3345556666666666666666666666655543 23455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007193 170 DGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (613)
..|...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00014 Score=60.04 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+...|++++|...|+.....+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 4444455555555555555555555554443 334445555555555555555555555555544322 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (613)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.7e-05 Score=58.49 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007193 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILL 416 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll 416 (613)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555556666666666666666655432 2345556666666666666666666666665532 22 355566666
Q ss_pred HHHhhc-CCHHHHHHHHHHHHHc
Q 007193 417 VACERK-DDVEVGLMLLSQAKED 438 (613)
Q Consensus 417 ~a~~~~-g~~~~a~~~~~~m~~~ 438 (613)
..+... |++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00018 Score=61.68 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=81.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (613)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888999999999998887754 3467888889999999999999999999988753 335778888889
Q ss_pred HHhhcCCHHHHHHHHHHHHHc
Q 007193 418 ACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~ 438 (613)
++...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999988863
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00016 Score=62.02 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777788888888888888888888765 4567788888888888888888888888887764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0001 Score=74.76 Aligned_cols=147 Identities=10% Similarity=-0.044 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (613)
...+.-...+++.|++++|++.|.++.+........... ........+..++ ++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~--------------al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG--ASVDDKRRNEQET--------------SILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS--SSBCSHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH--HHHHHHHhhhHHH--------------HHHHHHHHHHHC
Confidence 334555677889999999999999998865321111000 0000001111122 245566777777
Q ss_pred CChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 007193 106 KDSEGAFQVLRLVQEAG-LKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (613)
|++++|.+.+..+...- ..++. .+.+.+-..+...|+.++|.+++..... .+..+. ..++..+...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 77777777776655321 01111 1122222222334555666555554432 111111 23344445555555
Q ss_pred CCHHHHHHHHHHH
Q 007193 176 GQVAKAFGAYGIM 188 (613)
Q Consensus 176 g~~~~A~~~~~~m 188 (613)
|++++|..++++.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00036 Score=58.22 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++.... .+.+...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHH
Confidence 33444444444444444444444444432 222 233333344444444444444444443321 011233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00017 Score=64.26 Aligned_cols=61 Identities=20% Similarity=0.032 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
+|..+..+|.+.|++++|+..++...+.... +...+..+..+|...|++++|...|+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 333444444444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00039 Score=58.02 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
+...+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4556666666777777777777777776642 344 4555566666666777777777776666553 334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+..+...+...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666776666666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=59.43 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444555666777777777777766654 4456666666677777777777777777766653 3355566666667777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007193 175 AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (613)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00013 Score=59.39 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+..+...|.+.|++++|...|++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333444444444444444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.001 Score=67.21 Aligned_cols=165 Identities=9% Similarity=0.009 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIIS 341 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 341 (613)
+..+...|.+.|++++|.+.+..+...- ..++.. +.+.+-..+...|+.+.|..++...... +. ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455555666666666666555543310 011111 1111222222345566666666554321 11 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC-C-C--HH
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC-P-N--TI 410 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~ 410 (613)
+..+...|...|++++|..++++.... +-.+. ..++..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666677777777777666655431 11111 345666667777777777777777665431 111 1 1 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556667777777777666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=73.27 Aligned_cols=116 Identities=12% Similarity=-0.028 Sum_probs=55.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 324 (613)
.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555554443 333455555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (613)
..+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554442 1222233333333 455555555555555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=57.71 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=40.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 321 (613)
..+.+.|++++|...|++..+.+ +.+...|..+...+...|++++|+..|++..+..+. +...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34444445555555554444443 334444444444444445555555444444443322 3334444444444444444
Q ss_pred HHHHHHHHHH
Q 007193 322 AAFEILQEAK 331 (613)
Q Consensus 322 ~a~~~~~~~~ 331 (613)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00072 Score=54.90 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=50.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (613)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++..+.. +.+ ..++..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3444555666666666666665543 1222 345555556666666666666666655542 112 3445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
+.+.|++++|...|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00028 Score=59.80 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (613)
++..+...|...|++++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555555666666666666554321 1000 1334555666667777777777777665431 1111 124
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666777788888888888777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0016 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
.+..+...+.+.|++++|...|+......+... ...+..+..++...|++++|...|+.+.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444443321100 22333333444444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00029 Score=59.72 Aligned_cols=95 Identities=16% Similarity=0.031 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EV 305 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~ 305 (613)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++....... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555544332100 00 124455555555556666665555554331000 01 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
.+..+...+...|++++|...+.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00035 Score=71.68 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=79.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
..+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556777888888887777663 4457777778888888888888888888877764 345677777777888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 221 (613)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888776642 1123344444444 666777777777776
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00065 Score=58.03 Aligned_cols=62 Identities=10% Similarity=-0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...+++.++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344445555555555555555555544421 22344455555555555555555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.3e-05 Score=60.43 Aligned_cols=85 Identities=14% Similarity=-0.018 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007193 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
.|++++|...|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777776642 11234566677777777777777777777776642 224566667777777778888888
Q ss_pred HHHHHHHH
Q 007193 430 MLLSQAKE 437 (613)
Q Consensus 430 ~~~~~m~~ 437 (613)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00097 Score=68.02 Aligned_cols=121 Identities=11% Similarity=-0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
.+..+...|.+.|++++|...|++..+..-... ..+|..+..+|.+.|++++|+..+++..+....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444455555555555555555544321110 234444444455555555555555544443322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
+...|..+..+|...|++++|...|+...+.. +.+...+..+..++.+.++.+++
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 22333444444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00076 Score=57.59 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
..+......+.+.|++++|...|...... .- +.+...|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556667777788888888888777654 00 11234555666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 43 334556666666666666666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00074 Score=66.63 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKY---------------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
+..+...+.+.|++++|...|++..+. .-+.+..+|..+..+|.+.|++++|++.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 334444555555555555555554431 00112345555666666666666666666666554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666555543 22444444454444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.001 Score=67.83 Aligned_cols=97 Identities=8% Similarity=-0.048 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
...|..+...+.+.|++++|...|+...+.. +.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455566666777777777777777666542 111 234444444444444444444444444433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
. +.+...|..+..+|...|++++|+..|++..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 22333444444444444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00083 Score=66.27 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.|..+...+.+.|++++|+..|+...+.- ++. ......+++.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 35556666777777777777777666410 000 00000000000 10 123445556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (613)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+...+...++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666542 2245555566666666666666666666655421 22344555555555555555554
Q ss_pred H
Q 007193 254 R 254 (613)
Q Consensus 254 ~ 254 (613)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=57.73 Aligned_cols=85 Identities=12% Similarity=-0.079 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
.|++++|+..|+...+.+ -+.+...+..+...|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 12223445555555555566666666665555443 224455555555555566666666
Q ss_pred HHHHHHHh
Q 007193 183 GAYGIMRS 190 (613)
Q Consensus 183 ~~~~~m~~ 190 (613)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.012 Score=61.36 Aligned_cols=172 Identities=6% Similarity=-0.055 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
..++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456788888877764 4455666666666666665 778888888877664 456777777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc------
Q 007193 177 --QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA------ 247 (613)
Q Consensus 177 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~------ 247 (613)
+++++++.++++.+.. +-|..+|+.-...+.+.| ..+++.+.++++.+. -+.|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcccccc
Confidence 6688888888887764 446677777666666677 777777777777653 244566666665555543
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 248 --------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 248 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
+.++++.+.+++....+ +.+..+|+-+-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 34566777776666654 45566676666666665553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00077 Score=65.66 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34556666777788888888888877764 233221 11112222222111 1 12566666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH-HHhcCCh
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~-~~~~g~~ 250 (613)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766542 234566666777777777777777777766542 232 3333334333 2234455
Q ss_pred HHHHHHHHHHHhc
Q 007193 251 DRAREVYKMIHKY 263 (613)
Q Consensus 251 ~~A~~~~~~~~~~ 263 (613)
+.+..+|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6666666666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00065 Score=66.23 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.+..+...+.+.|++++|...|.+..... |+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45556666667777777777777766542 32221 112222222222111 125566666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HhhcCCHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 428 (613)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666543 23466666677777777777777777776654 234332 23322222 2234455666
Q ss_pred HHHHHHHHH
Q 007193 429 LMLLSQAKE 437 (613)
Q Consensus 429 ~~~~~~m~~ 437 (613)
...|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0034 Score=52.59 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-------
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK-A-----DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA------- 156 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 156 (613)
+......+.+.|++++|+..|+...+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445566667777777777766654311 0 11 25555555555555555555555555443
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 157 GIEPNVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 157 g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
. +-+...| .....++...|++++|+..|++..
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1123344 444455555555555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0042 Score=52.05 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKG------TP-----EVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIP- 302 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p- 302 (613)
....+.+.|++++|...|++..+..... +. ..|+.+..++.+.|++++|+..+++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344445555555555555544432110 11 25555555556666666666555555543 0122
Q ss_pred CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 303 DEVFL----SALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 303 ~~~~~----~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+...| .....++...|++++|+..|+...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334 444445555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.018 Score=60.21 Aligned_cols=169 Identities=8% Similarity=-0.042 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 318 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 318 (613)
-++|.+.++++...+ +.+..+|+.--..+...|+ ++++++.++.+.+..++ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345677777776665 4455666655555555555 67777777777766554 5666666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------
Q 007193 319 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 387 (613)
Q Consensus 319 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 387 (613)
+++++++.++.+.+.. +-+...|+.-...+.+.| .++++.+.++++.+.. +.|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777777777664 445666666666666666 6777777777766654 34566666655555442
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 007193 388 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (613)
Q Consensus 388 -----g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (613)
+.++++++.+++.... .| |...|...-..+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3456777777776663 34 45556665555555555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00035 Score=55.01 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VHT 164 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 164 (613)
...|..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|.+.|++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4455566666667777777777777666653 445666666666677777777777777766654 233 333
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~ 183 (613)
+..+...+...|+.+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444444444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.01 Score=48.88 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHHH
Q 007193 353 KNWQKALELYEHMK 366 (613)
Q Consensus 353 g~~~~A~~~~~~m~ 366 (613)
+++++|.+.|++..
T Consensus 75 ~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 75 KDLRKAAQYYSKAC 88 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.013 Score=48.22 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 324 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~ 324 (613)
++++|.+.|++..+.+ .+... +...|...+..++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22211 4444444455555555555555543 34444555555554 45566666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 369 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (613)
..|+...+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655554 34455555555555 555666666666555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.004 Score=46.53 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.|..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444455555555555555555555442 334444555555555555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.002 Score=65.78 Aligned_cols=124 Identities=7% Similarity=-0.014 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNA 379 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 379 (613)
+...|++++|..++++..+. | .+....+++.|...|...|++++|..++++..+ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766542 1 112244677777788888888888777776643 121 122 456777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh---CCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 380 LITALCDGDQLPKTMEVLSDMKS---LGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|...|...|++++|..++++..+ .-+-||. .+...+-.++...+.+++|...+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888777543 1122332 2333444555667777777777766654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.002 Score=65.76 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=38.7
Q ss_pred HhcCChHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKY---NIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PD-EVFLSAL 310 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~l 310 (613)
...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++..+ .|.. |+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555544332 1111 123455555555555555555555554432 1111 11 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 007193 311 IDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (613)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0037 Score=49.48 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|+..|+...+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 3344455555555555555555555555554432 2234445555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0073 Score=45.05 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+...|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444455555555555555544433 233444445555555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0053 Score=48.54 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
..+..+...|...|++++|...|++..+.+ +.+...|..+...|...|++++|...|++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444444444332 223333444444444444444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0031 Score=49.30 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554443 334445555555555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0027 Score=53.08 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (613)
+.+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++. .| +...|..+-.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3344555555555555433 2345555555555555444 34777777777663 44 455677777777
Q ss_pred hhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007193 420 ERK-----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 420 ~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (613)
... |++++|.+.|++.++ +.|+...|..-+.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 665 478888888888887 56776666655555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.003 Score=52.82 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
++|+..|++.++.. +.+..+|..+..+|... |++++|+..|++..+. .|+...|...+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45566666555543 22445555555555554 3666777777666654 455554444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=45.19 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+...+..+...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555556666666666666666655554 33445566666666666666666666655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.013 Score=45.02 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555555544443 2233444444455555555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.098 Score=50.30 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 6678888888777777899999999999988874 78777878888888899999999999888876 56666664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.052 Score=52.20 Aligned_cols=63 Identities=10% Similarity=-0.055 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|...+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555432 4444444444445555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.14 Score=56.13 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34566666666654332 245566666666666666666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.42 Score=52.34 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=96.6
Q ss_pred HHHcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 101 VCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 101 ~~~~~~~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
.....+++++|.+ ++.. ++ +......++..+.+.|..++|.++.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677777766 4411 11 12233667777888888888876653211 1133456788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (613)
.|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...|...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 888876544 3567888899999999999999998887642 34455556667777766665555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
....| -++.-...|.+.|++++|++++.++
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544 1344444455666666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.13 Score=42.37 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHH
Q 007193 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (613)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (613)
.+..+.+-|.+..+.+ .++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666677666655 378888888888999988 5669999999988764 35 244455566788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 007193 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 429 ~~~~~~m~~~g~~p~~~~~~~li~~ 453 (613)
+++++.+++ ++|+..-...+...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999998 56765444444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.054 Score=54.24 Aligned_cols=25 Identities=8% Similarity=-0.190 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
+++.+...|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.027 Score=56.35 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 007193 317 AGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALIT 382 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li~ 382 (613)
.|++++|..++++..+. | .+....+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666776666665432 1 111234566666777777777777766666543 110 122 345666666
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 007193 383 ALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~ 401 (613)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.037 Score=41.99 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444455555444444432 22333 444444444444555555544444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.098 Score=39.50 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=30.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 242 KACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
..+.+.|++++|...|++..+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555543 33344 5555555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.05 Score=54.40 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNA---GIEP----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITA 206 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~ 206 (613)
|++++|+.++++..+. -+.| ...+++.|...|...|++++|..++++..+. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666554431 0111 1345666666666666666666666665431 1 1222 3356666666
Q ss_pred HHccCCHHHHHHHHHHHh
Q 007193 207 CGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~ 224 (613)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666777666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.15 Score=50.96 Aligned_cols=61 Identities=21% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+++.+...|...|++++|+.++++... .|. .|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555555555555555555554432 111 111 1344555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.26 Score=36.95 Aligned_cols=67 Identities=6% Similarity=-0.048 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 232 PDHITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
.|...+..+..++...++ .++|..+|++..+.+ +.++.....+...+.+.|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344455555555543333 466666666666655 4555666666666666666666666666666553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.21 Score=37.52 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 126 DCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 345555555544432 223444444444555555555555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=1 Score=38.10 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
..|+++.|.++.+++. +...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444454444444331 344455555555555555555555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.51 E-value=1.9 Score=36.43 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007193 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (613)
.|+++.|.++.+.+ .+...|..|.......|+++-|...|..... +..+.-.|...|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444333 2345566666666666666666666665542 333444555566665555544444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
...| -++.....+.-.|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4332 1444445555666666666666444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.3 Score=40.23 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 007193 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
..+.+-|....+.+ +++..+...+.-++++.+ +.+++..+|+...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555554 356666666666677766 4557777777766543 13 23444455666677777777777
Q ss_pred HHHHHHhCCCCCC
Q 007193 396 VLSDMKSLGLCPN 408 (613)
Q Consensus 396 l~~~m~~~g~~p~ 408 (613)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3564
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=1.9 Score=34.29 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33334444444444444444443221 23444444444444444444444444444444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=4 Score=37.62 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 007193 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (613)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (613)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+-..+..++......++.. |
T Consensus 179 l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777653 555 55778888888884 88999999999888875323477888888888884 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVI--PDEVFLSA 309 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~--p~~~~~~~ 309 (613)
+.+++.+.+++....... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 889999999988887666 66544443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=4.4 Score=37.36 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 007193 250 VDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVE 321 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 321 (613)
...|...+++..+.+ +. +...|..+...|.+. |+.++|.+.|++..+.+..-+..++......+++. |+.+
T Consensus 179 l~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 466777788877764 22 256888899888884 89999999999988865432356666777777774 8899
Q ss_pred HHHHHHHHHHHCCCC--cCHHhHHH
Q 007193 322 AAFEILQEAKNQGIS--VGIISYSS 344 (613)
Q Consensus 322 ~a~~~~~~~~~~~~~--~~~~~~~~ 344 (613)
++...+++....... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999887655 55444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.98 E-value=1.1 Score=34.18 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+.+.+++..|...|+...+.. -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555556666555555543321 1123445555556666666666666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.5 Score=36.17 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+..+..++.+.|+++.|...++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444455555555555555555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.76 Score=37.41 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=48.0
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (613)
..++.++|.++|+.++..+-+- ...|.....--.++|++..|++++.+.+..+..|....-.++-
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 3478899999999987643222 6667776677788999999999999999887776554444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.94 E-value=1.5 Score=35.77 Aligned_cols=113 Identities=10% Similarity=-0.001 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~ 155 (613)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|--|-- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55778888888888777888 7888888887764 455421 1111111 11344788888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (613)
.. +.=...|-.....-.+.|++..|.+++......+..| ...+...+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 52 3336667777777778888888888888888776443 33443333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.94 E-value=1.7 Score=34.38 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP-N-TITYSILLVACERKDDV 425 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~ 425 (613)
....+..+.+-|......| .++..+-..+..++.++....+ ++.++++..+.+ .| + ....-.+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455556666555444 3677777777788888777665 888888877653 24 2 23334455678888899
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 007193 426 EVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~ 444 (613)
++|++.++.+++ +.|+.
T Consensus 91 ~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 999888888887 45654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.17 E-value=4.8 Score=32.07 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. -| ...+|++....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FD----------LDKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SC----------GGGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cC----------cHhhhcHHHHH
Confidence 45566666666655543 13445555555445555555555555554331 11 11223333322
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
.-+-.+-. +......-++.+...|+-++-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22222111 113344455556666666666666666433 234455666666666666666666666666666665
Q ss_pred C
Q 007193 335 I 335 (613)
Q Consensus 335 ~ 335 (613)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.49 E-value=19 Score=39.22 Aligned_cols=342 Identities=10% Similarity=0.010 Sum_probs=165.5
Q ss_pred HHHHHhcCCHHHH-HH-HHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHH--HHHHHHHHHH
Q 007193 32 YNRLIRQGRISEC-ID-LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS--TFNMLMSVCA 103 (613)
Q Consensus 32 ~~~l~~~g~~~~A-~~-l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~li~~~~ 103 (613)
.|.++..|--... +. -.+.+.+.. +|.......-+. ....|+.++++.+++.... .+.. .=..+.-+..
T Consensus 346 ~Naf~naG~~~D~~l~~~~~Wl~k~~--~~~k~sA~aSLG-lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 346 ANGFMHAGTTDNSFIKANLPWLGKAQ--NWAKFTATASLG-VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHTTTTCCCHHHHHCHHHHHHCC--THHHHHHHHHHH-HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhcchhhhhccc--hHHHHHHHHHhh-hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 4777766633222 11 123444432 343332222122 2344566777888876443 2322 2222333455
Q ss_pred cCCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHH--HH--HHHHH
Q 007193 104 SSKDSEGAFQVLRLVQEAGL-------KADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHT--YG--ALIDG 171 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~--~~--~li~~ 171 (613)
..|..+++..++.......- .+....-.++--+++-.|.- +++.+.+..+.... +..+ .. +|...
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli 499 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLC 499 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhh
Confidence 66666677776666554321 01122233333333334432 45566666665432 2221 22 22333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH---HHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACAN 246 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~---~ll~~~~~ 246 (613)
+.-.|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|. .-|. ++.-+|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~-vRygaa~alglAyaG 572 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESL-LRYGGAFTIALAYAG 572 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHH-HHHHHHHHHHHHTTT
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHH-HHHHHHHHHHHHhcC
Confidence 445677777777777666531 3333333333 3446678777777777776531 222 2222 23345667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFE 325 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~ 325 (613)
.|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 778777777887776542 2222222233334445666666777776666543 23333333333333334433 56777
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChh
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAK---------NWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLP 391 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~ 391 (613)
++..+... +|..+-...+.++...| ++..-++.+...... .-.++...-..+..+....|.-.
T Consensus 651 ~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 651 VLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 77777643 34444433333443322 344444444444332 11233444555666666666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.01 E-value=5.5 Score=39.78 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHhhhHHHHHHHHHH
Q 007193 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (613)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (613)
..+|.............+.+ |++++|++.+-.+.+.. -.++.......++..|...++++...+.+
T Consensus 10 e~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 10 DKDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp ------------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34555556666655666544 77888888877666531 12344445555666777666666554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.73 E-value=1.7 Score=34.42 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 393 (613)
.+..+.+-|......| .++..+-..+..++.+...... ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3566666666667777666554 777777776643 12 233444566677888888888
Q ss_pred HHHHHHHHhCCCCCC
Q 007193 394 MEVLSDMKSLGLCPN 408 (613)
Q Consensus 394 ~~l~~~m~~~g~~p~ 408 (613)
.+.++.+.+ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888777 3564
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.69 E-value=3.1 Score=31.12 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
+.-+..+-++.+....+.|++....+.+.||.+..++..|.++++-+... +.+...+|..++.-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34466777777778889999999999999999999999999999988742 233355788887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.18 E-value=13 Score=42.20 Aligned_cols=89 Identities=9% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (613)
..-|..++..+.+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566677777777777777766655544321111 12467777778888888888877777765532 3456667
Q ss_pred HHHHHHccCCHHHHH
Q 007193 203 LITACGQSGAVDRAF 217 (613)
Q Consensus 203 li~~~~~~g~~~~a~ 217 (613)
|+...+..+..+.-.
T Consensus 977 LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCChhhhh
Confidence 777777766655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.55 E-value=2.7 Score=44.82 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
+...|+++.|+++-++....- +-+-.+|-.|..+|.+.|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555544321 122455555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=3 Score=40.84 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
..++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555555555555554331 334455555555555555555555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.91 E-value=10 Score=40.36 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CHH--
Q 007193 237 IGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK------GVIP-DEV-- 305 (613)
Q Consensus 237 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~-- 305 (613)
..+++..+...++ .+.|..+|+++...+...+......++..+.+.+. --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555555 46677777777665421121222233333333332 22344444443321 1111 111
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 306 --------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 306 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
....=.+-|...|+++.|+.+-++..... +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234556788888888888877663 5567788888888888888888888877763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.00 E-value=5 Score=39.23 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHhH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISY 342 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 342 (613)
...++..+...|+++++...+..+....+- +...+..+|.++.+.|+..+|+..|+...+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344556666667777776666666554332 566667777777777777777766666543 3666766554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.77 E-value=37 Score=33.74 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~ 271 (613)
..|...+-..|++.+|.+++..+..+..+..+. ...+...+..|...+++..|..++.++... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345566666677777777766665432222211 233444556666667777776666655321 11111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
+..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555556666666665555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.43 E-value=57 Score=35.68 Aligned_cols=267 Identities=9% Similarity=0.028 Sum_probs=128.7
Q ss_pred HHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K-----PDRVVFNALITAC 207 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~~~ 207 (613)
....|+.++++.+++.....+ -.+....-..+.-+.+..|...++..++.......- . +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566677776666654311 012223333444455566665667776665543210 0 1111112222222
Q ss_pred H--ccCCHHHHHHHHHHHhhCCCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH--HHHH
Q 007193 208 G--QSGAVDRAFDVLAEMNAEVHPVDPDHIT--IG--ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCC 279 (613)
Q Consensus 208 ~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~ 279 (613)
+ -.++ +++.+.+..+... .+..+ .. ++...+.-.|+.+....++..+.+.. +..+...+ .-++
T Consensus 464 a~~GS~~-eev~e~L~~~L~d-----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYN-----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHT-----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HhcCCCC-HHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 2 2333 3445555554432 12111 11 22233445566666667776665532 22232223 3334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
...|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+......++..+.... ..++.-...+.-++...|+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 46677777777777776541 121 2222 22335666777766666777776542 222332223333344466666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (613)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (613)
.+.++++.+.+.+ .|.+..-..+.-+....|.. .++++++..+.. .+|..+-...+.+.
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 6667766555533 34444444455555555554 467777777764 35554443333333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.13 E-value=16 Score=29.04 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
-+..+-++.+....+.|++......+.+|.+..|+..|.++++-+... +.+...+|..++.-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 356666777777889999999999999999999999999999988743 334466788887654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.91 E-value=12 Score=27.94 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
...++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 355666666666665542 22222222334556777777777666554 677777766644 3566767777666
Q ss_pred HHHHhCCCCCCHHHHH
Q 007193 186 GIMRSKNVKPDRVVFN 201 (613)
Q Consensus 186 ~~m~~~g~~p~~~~~~ 201 (613)
.++..+| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 6666665 44444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.41 E-value=36 Score=32.04 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=104.4
Q ss_pred ccchhhhHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 007193 22 AHDVSEQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 98 (613)
.+.+...+.-...-|..|++ =||.+.++.+..+ +.+++++++|+.++-..
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G----------- 61 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV----------- 61 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------
Confidence 34455666667777888998 7787777655433 34556677777654321
Q ss_pred HHHHHcCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHH----CC--CCCCHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMVN----AG--IEPNVHTYGA 167 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~----~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~ 167 (613)
...+.+.|+...|-++. +-..+.++++|......|+..+.....-+ .=..+.+++.+ .| -.-|......
T Consensus 62 A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 141 (336)
T 3lpz_A 62 SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHV 141 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 23345556665555444 55556788888888888888777665422 11223333321 12 1235555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
+...|.+.+++.+|..-|- . |-.++...|..++.-+...+.. ..+|.+...+++. |.-.
T Consensus 142 ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~----------------~e~dlfiaRaVL~-yL~l 200 (336)
T 3lpz_A 142 VGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDES----------------HTAPLYCARAVLP-YLLV 200 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCG----------------GGHHHHHHHHHHH-HHHT
T ss_pred HHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCC----------------ccHHHHHHHHHHH-HHHh
Confidence 6677777777777766652 2 2233334554444333332221 1223333333333 4445
Q ss_pred CChHHHHHHHHHHH
Q 007193 248 GQVDRAREVYKMIH 261 (613)
Q Consensus 248 g~~~~A~~~~~~~~ 261 (613)
+++..|..+|+...
T Consensus 201 ~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 201 ANVRAANTAYRIFT 214 (336)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66777766655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.58 E-value=20 Score=28.48 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
.|+..+--.+..++.++... .+++.+++++.+.+ | ....+-.+.-++.+.|++++|+++.+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 57777766677777777654 46888888887754 4 234455566788999999999999998887 567755
Q ss_pred HHHHHHHH
Q 007193 446 MFKCIIGM 453 (613)
Q Consensus 446 ~~~~li~~ 453 (613)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 613 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.06 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.06 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.04 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.29 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.22 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.08 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.62 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.07 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.7e-20 Score=184.33 Aligned_cols=378 Identities=13% Similarity=0.049 Sum_probs=267.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+...+.|++++|++.|+++.+.. |.+......++.++...|++++|...|+++. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45568899999999999988876 6666667777777777888888888887653 445677778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...+....+.. +.+..............+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 8888888877765 4445555555555556666666665555554433 3344455555566667777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
... +-+...+..+...+...|+.++|...+.+..... +.+...+..+...+...|++++|...++.....+ +.+.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 542 3345666677777778888888888887776531 3345667777777888888888888887777765 4556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
..+..+...+.+.|++++|+..|++..+..+. +..++..+...+...|++++|...+....... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 67777777888888888888888887776443 56677777777888888888888887776654 55667777777778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (613)
.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|++.|++..+ +.| +...|..+..++.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888776643 23466777777778888888888888877776 355 35567777777666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.2e-19 Score=175.81 Aligned_cols=372 Identities=13% Similarity=0.078 Sum_probs=304.3
Q ss_pred HHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 007193 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (613)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (613)
+..+.+.|++++|.+.|+++. +.++..+..+...+.+.|++++|...++.+.+.. +.+..++..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 344556789999999998764 4567889999999999999999999999998875 556889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
+|.+.+....... +.+...+..........+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999988765 4455556666666666677666666666655443 3344455556666777888888888887776
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007193 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (613)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 304 (613)
.. .+.+...+..+...+...|+++.|...+++..+.+ +.+..+|..+...+...|++++|...+......+.. +.
T Consensus 163 ~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 163 ET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred cc---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 53 23456778888899999999999999999988875 567788999999999999999999999999887544 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (613)
..+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 788888999999999999999999998875 5567889999999999999999999999887654 56788899999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 007193 385 CDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGM 453 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 453 (613)
.+.|++++|++.|++..+. .| +..++..+..++...|++++|...|+++++ +.|+ ...|..+..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999998874 55 567788899999999999999999999987 4565 4455555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.9e-12 Score=124.52 Aligned_cols=227 Identities=11% Similarity=-0.038 Sum_probs=127.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
....+.+.|++++|...|+.+.+.. +.+..+|..+..++...|++++|...|.+..+.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4455777888888888888888764 4457788888888888888888888888877654 3456777778888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVF----------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll 241 (613)
+++|.+.+++.... .|+.... ...+..+...+...+|.+.|.+..... +-..+..++..+.
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLG 179 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh-hcccccccchhhH
Confidence 88888888887654 2221110 001111222233444444444433221 1122334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 321 (613)
..+...|++++|...|++..... +.+..+|..+...|.+.|++++|.+.|++..+..+. +...+..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence 45555555555555555544433 333444555555555555555555555554443221 3344444444555555555
Q ss_pred HHHHHHHHHH
Q 007193 322 AAFEILQEAK 331 (613)
Q Consensus 322 ~a~~~~~~~~ 331 (613)
+|...|.+.+
T Consensus 258 ~A~~~~~~al 267 (323)
T d1fcha_ 258 EAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.3e-11 Score=118.63 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=131.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHc
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (613)
...--..+.+.|++++|+..|+++.+.+ |.+...+..++.++...|++++|...|.+.. +.+...|..+...+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 3444456789999999999999999987 7777777888888888899999998888643 4567788888888899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++++|.+.++...... |+............. ..+.......+..+...+...+|...
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 999999999888887642 221110000000000 00000011111122223333444444
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 185 YGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 185 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
|.+..... -.++...+..+...+...|++++|...|++..... +.+..++..+...|.+.|++++|.+.|++..+.
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc---cccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 44433221 11233444444444555555555555555444321 223344444555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
+ +.+..+|..+...|.+.|++++|++.|++.
T Consensus 236 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 236 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEA 266 (323)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h-hccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 333444555555555555555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.7e-08 Score=93.22 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
..++.+...+.+.+.+++|+++++.+++.+ |-+...|+....++...| ++++|++.++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345556666777777777777777777764 445667777777766665 4777777777776654 4466777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC--
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~-- 249 (613)
+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|.+.++.+.... +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccc
Confidence 777777777777777777653 3456677777777777777777777777776531 3345566666555555544
Q ss_pred ----hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007193 250 ----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (613)
Q Consensus 250 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 314 (613)
+++|...+....+.+ +.+...|+.+...+... ..+++.+.++...+....+ +...+..+...|
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456777777666665 45666666665554433 3455666666655433222 334444444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=6.6e-08 Score=91.31 Aligned_cols=187 Identities=15% Similarity=0.112 Sum_probs=147.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+...........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887655666778888888899999999999999998876554445678888888889999999999999
Q ss_pred HHHHCCCCcCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CC
Q 007193 329 EAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LC 406 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~ 406 (613)
.+.+.. +.+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+.++|..+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 988775 3344445444433 344688999999999988752 4567889999999999999999999999987743 34
Q ss_pred CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 407 PN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 407 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 45788888877888999999999988875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=5.3e-08 Score=91.97 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
.++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+..........+|...+....+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45666666666654444455666666666677777777777777766543222234566666766677777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C
Q 007193 188 MRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-I 265 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~ 265 (613)
+...+ +.+...|...... +...|+.+.|..+|+.+... .+.+...|...++.+.+.|+++.|+.+|++..... .
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 66553 2223333322222 23346666666666666653 23345566666666666667777777776665543 1
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 266 KG--TPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 266 ~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
.| ....|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 134566666666666666666666666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=8.9e-08 Score=90.53 Aligned_cols=216 Identities=8% Similarity=-0.007 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
...++.+-..+.+.+..++|+++++++++.. +-+...|+.....+...| ++++|+..+++..+.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3456666677778888999999999988874 446677888888877766 4889999998887663 445778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-
Q 007193 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD- 284 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 284 (613)
.+.+.|++++|++.+.++.... +.+...|..+...+.+.|++++|...++++.+.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 8888899999999998887642 4567888888888888999999999999888876 5567778777666665554
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHH
Q 007193 285 -----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACS 350 (613)
Q Consensus 285 -----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 350 (613)
+++|++.+....+..+. +...|..+...+.. ...+++.+.+....+.... .+...+..+...|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 56788888777776543 56666666554443 3456666766666554322 23444555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=5.3e-07 Score=86.34 Aligned_cols=268 Identities=11% Similarity=-0.004 Sum_probs=153.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EP----NVHTYGALI 169 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~----~~~~~~~li 169 (613)
...+...|++++|+++++...+.....+ ...+..+...|...|++++|.+.|++..+... .+ ...++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3446677788888888777766431111 23556666777778888888888777654210 01 123445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCC--C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRS----KNVKP--D-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGAL 240 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~----~g~~p--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~~l 240 (613)
..+...|++..+...+.+... .+..+ . ...+..+...+...|+++.+...+......... ......++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777888877777766543 11111 1 123445556677777787777777666542111 11223344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYN--IKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li 311 (613)
...+...++...+...+....... .... ...+..+...+...|++++|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 566667777777777665543321 1111 2234555666667777777777776655432221 223445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.++...|++++|...++.... .+..| ...++..+...|.+.|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777777777766543 22222 23355666666777777777777776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=2e-07 Score=89.45 Aligned_cols=266 Identities=11% Similarity=-0.029 Sum_probs=145.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~ 242 (613)
.+...|++++|++++++..+.....+ ...++.+...+...|++++|...|.+....... .++ ...+..+..
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHH
Confidence 34445555555555555444310000 123344444555555555555555544321000 011 123334445
Q ss_pred HHHhcCChHHHHHHHHHHHhc----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKY----NIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPDEVFLSALI 311 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li 311 (613)
.+...|++..+...+...... ..... ...+..+...+...|+++.+...+....... .......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 555666666666665544321 11111 1234455566666777777777766655421 112233444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (613)
..+...+....+...+...... +..+ ....+..+...+...|+.++|...+.......... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 5566667777776666655432 1111 12345556666778888888888887765532222 2345566777
Q ss_pred HHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 383 ALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+...|++++|...+++... .+..|+ ..++..+...+...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888887653 244443 34566777888889999999988887754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=4e-08 Score=90.16 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
.+|..+...|.+.|++++|...|+...+.. +-++.+|+.+..+|.+.|++++|.+.|++..+.. +.+..++..+...|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 456666777888888888888888888764 5567788888888888888888888888887764 33566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC---
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--- 249 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~--- 249 (613)
...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHHH
Confidence 88888888888888877653 234444333444445555544444444444332 12211221 2222211111
Q ss_pred -hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 250 -VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 250 -~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
.+.+...+....... +....+|..+...|...|++++|.+.|+......
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111221111111110 1112356667777777788888888887777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=1.7e-08 Score=96.80 Aligned_cols=253 Identities=8% Similarity=-0.039 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC----------AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
..++|+++++...+.. |-+...|+..-..+ ...|++++|+..++...+.. +.+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 3456666666666543 22233333222221 12223445555555554432 234444554444444433
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007193 177 Q--VAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (613)
Q Consensus 177 ~--~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (613)
+ +++|...+.++.+.. +++...+.. ....+...+..++|...++...... +.+...|..+...+.+.|++++|
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHHH
Confidence 2 455555555554432 223333332 2234444555555555555544321 22344455555555555555444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
...+....+.. |+ .......+...+..+++...+......
T Consensus 198 ~~~~~~~~~~~-------------------------------------~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 198 GPQGRLPENVL-------------------------------------LK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp SSCCSSCHHHH-------------------------------------HH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHhHHhH-------------------------------------HH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 33322211110 00 011112223334444455555544444
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007193 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
. +++...+..+...+...|+.++|...+.+..... +.+..+|..+...|...|++++|++.+++..+ +.|+.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~ 309 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 309 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGG
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCccc
Confidence 3 3334444455555555666666666666655432 12234555566666666666666666666665 34543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=2e-08 Score=96.29 Aligned_cols=228 Identities=8% Similarity=-0.088 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHH
Q 007193 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--VDRAREVYKMIHKYNIKGTPEVYT-IAINCCSQTGDWEF 287 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~ 287 (613)
|.+++|+.+++..... -+.+...|..+..++...+. +++|...+..+.+.+ +++...+. .....+...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 4456677777776653 13345555555555555543 667777777777665 34445543 33456666777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|+..++.+...++. +...|..+...+.+.|++++|...+....+.. |+ ...+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888777776654 66777777777777777776655544333221 11 12233345556777788888887766
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH-H
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-V 445 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 445 (613)
.. +++...+..+...+...|+.++|.+.+.+.... .| +..++..+..++...|+.++|.+.++++++ +.|+. .
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~ 311 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 311 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence 54 344556677777888889999999999988764 34 456777888999999999999999999998 56753 3
Q ss_pred HHHHHHHH
Q 007193 446 MFKCIIGM 453 (613)
Q Consensus 446 ~~~~li~~ 453 (613)
.|..|-..
T Consensus 312 y~~~L~~~ 319 (334)
T d1dcea1 312 YLDDLRSK 319 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45545433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=6.2e-07 Score=81.90 Aligned_cols=195 Identities=14% Similarity=0.000 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
++..+...|.+.|++++|...|++..+.+ +.++.+|+.+..+|.+.|++++|++.|+++.+..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44555566677777777777777776654 455667777777777777777777777777665433 4455666666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh----h
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL----P 391 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~ 391 (613)
..|++++|...+....+.. +.+......+...+.+.+..+.+..+........ ++...++ ++..+...... +
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777766654 2333333333444445555444444444444321 1111222 12222211111 1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 392 KTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.+...+..... ..|+ ..+|..+...+...|++++|...|++.+..
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111111 1122 234556677778888888888888887763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.7e-06 Score=71.82 Aligned_cols=121 Identities=15% Similarity=0.015 Sum_probs=97.7
Q ss_pred HhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 007193 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (613)
+...|+++.|++.|.++.++++.+|..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 4567889999999999888888899999999999999999999999999876 667888999999999999999999999
Q ss_pred HHHHHCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 151 HEMVNAGI--------------EP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 151 ~~m~~~g~--------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
++.....- .+ ...++..+..++.+.|++++|.+.|.......
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 98765310 00 12445566777888888888888888877653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=4e-05 Score=65.78 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=50.9
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
.+...|+++.|.+.|.++. +|+..+|..+...|...|++++|.+.|++..+.+ +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 3455566666666665431 3445555566666666666666666666666655 44556666666666666666
Q ss_pred HHHHHHHHHHHH
Q 007193 286 EFACSVYDDMTK 297 (613)
Q Consensus 286 ~~a~~~~~~m~~ 297 (613)
++|++.|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=2.6e-05 Score=72.18 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=27.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 134 ITTCAKSGKVDAMFEVFHEMVNA----GIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
...|...+++++|.+.|.+..+. +-++ -..+|+.+..+|.+.|++++|...+++.
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 44555666666666666555431 1011 1234555555555556655555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.9e-05 Score=60.51 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 323 (613)
+.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++++|+..+....+.++. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 444444444444444444443 333444444444444444444444444444443322 334444444444444444444
Q ss_pred HHHHHHHHH
Q 007193 324 FEILQEAKN 332 (613)
Q Consensus 324 ~~~~~~~~~ 332 (613)
...|+...+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.1e-05 Score=59.60 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.+....+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445666677777777777766654 5556667777777777777777777777766654 44666666777777777777
Q ss_pred HHHHHHHHHHHhC
Q 007193 179 AKAFGAYGIMRSK 191 (613)
Q Consensus 179 ~~A~~~~~~m~~~ 191 (613)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=3.7e-05 Score=71.03 Aligned_cols=196 Identities=9% Similarity=0.043 Sum_probs=118.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSAL 310 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~l 310 (613)
...|...+++++|.+.|.+..+. +-+ ....+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45577788888888888776543 111 11346777888888888888888888776542 11 0112345555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 007193 311 IDFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMN 378 (613)
Q Consensus 311 i~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~-~~~~ 378 (613)
...|.. .|++++|...+.+..+. +.++ ...++..+...|.+.|++++|...|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555643 58888888888776532 2111 134567778888888888888888888765421111 1 2233
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHhh--cCCHHHHHHHHHHHH
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLC-PN---TITYSILLVACER--KDDVEVGLMLLSQAK 436 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~ll~a~~~--~g~~~~a~~~~~~m~ 436 (613)
.++..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4455666778888888888887663211 11 2244555666544 344677777665544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.9e-05 Score=62.96 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 320 (613)
...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|...|+...+.... +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 345566666666666666666655 455666666666666666666666666666665433 455666666666666666
Q ss_pred HHHHHHHHHHHHCC
Q 007193 321 EAAFEILQEAKNQG 334 (613)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (613)
++|...+.+..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.003 Score=56.70 Aligned_cols=224 Identities=11% Similarity=-0.022 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|-..|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666666677778888888888777665 44555556666655 456777777777766654 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 167 ALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 167 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
.+...+.. ..+.+.|...++.....|. ......+...+. .......+...+..... ..+...+.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 146 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-----LNDGDGCT 146 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-----ccccchhh
Confidence 44444433 4566777777777766652 222222222222 23445566666655443 23455555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
.|...|.. ..+...+...++...+.+ +..+...+...|.. ..++++|+..|....+.| +...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHH
Confidence 56555554 334555566666555543 23444444444443 345666666666666554 23344444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 007193 311 IDFAGH----AGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~~~~~~ 334 (613)
...|.+ ..+.++|.+.|+...+.|
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 444433 224555666665555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=8.2e-05 Score=61.55 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=69.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
....|.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3456777888888888888887765 5567777788888888888888888888877664 4456777778888888888
Q ss_pred HHHHHHHHHHHHhC
Q 007193 178 VAKAFGAYGIMRSK 191 (613)
Q Consensus 178 ~~~A~~~~~~m~~~ 191 (613)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888877765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=3.7e-05 Score=66.47 Aligned_cols=93 Identities=14% Similarity=-0.067 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
.+......|.+.|++++|...|.+..+.+ +.++..|+.+..+|.+.|++++|+..|....+..+. +..+|..+..+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33334444444444444444444444443 334444444444444444444444444444433221 2334444444444
Q ss_pred hcCCHHHHHHHHHHH
Q 007193 316 HAGKVEAAFEILQEA 330 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~ 330 (613)
+.|++++|...|+..
T Consensus 84 ~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 84 EMESYDEAIANLQRA 98 (201)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 444444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=3.6e-05 Score=66.56 Aligned_cols=98 Identities=8% Similarity=-0.063 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
|+...+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 344444455555666666666666666665553 4455566666666666666666666666665442 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+|.+.|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2.1e-05 Score=61.70 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNT-ITYSILLVA 418 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 418 (613)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+++|+++...+..|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456666777777777777777777654 34566777777777665544 3577777777664322322 256666777
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 419 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (613)
|.+.|++++|++.|+++++ +.|+..-...+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 7778888888888877777 456654444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.95 E-value=0.0058 Score=54.63 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (613)
+...+...+....+.| +......+...|.. ..+.++|...|.+..+.| ++..+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 3444444554444443 33333334333333 345666666666665543 34444445554443 2255
Q ss_pred hHHHHHHHHHHhCC
Q 007193 391 PKTMEVLSDMKSLG 404 (613)
Q Consensus 391 ~~A~~l~~~m~~~g 404 (613)
++|.+.|++..+.|
T Consensus 235 ~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 235 KQAIENFKKGCKLG 248 (265)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc
Confidence 56666666665554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.90 E-value=7e-05 Score=57.67 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=56.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+...+.+.|++++|...|+...+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445566666777777766666654 3356666666666666677777776666666553 3356666666666666666
Q ss_pred HHHHHHHHHHH
Q 007193 178 VAKAFGAYGIM 188 (613)
Q Consensus 178 ~~~A~~~~~~m 188 (613)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=4.9e-05 Score=59.42 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~ 383 (613)
..+++.+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|..+|+++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666777778888888888877765 5567777777777776444 4468888888776442232 2366677788
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007193 384 LCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (613)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (613)
|.+.|++++|++.|+++.+ +.|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 8888888888888888877 3565443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.84 E-value=8.6e-05 Score=57.12 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=36.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 323 (613)
+.+.|++++|...|++....+ +.++.+|..+...+.+.|++++|+..|++..+..+. +...+..+...|...|+.++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHH
Confidence 444444444444444444433 233444444444444444444444444444443222 333444444444444444444
Q ss_pred HHHHH
Q 007193 324 FEILQ 328 (613)
Q Consensus 324 ~~~~~ 328 (613)
.+.++
T Consensus 104 ~~~l~ 108 (112)
T d1hxia_ 104 LASLR 108 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.012 Score=54.06 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
+|..--..+.+-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 344444445555666666666666665443 2445555666666666666655443 1455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
..+.+......| .+...+...+......++..|-..|.+++...+++..... -.++...++.++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHh
Confidence 666665554332 1222222334444555666666666666666666655421 134455556666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.016 Score=53.25 Aligned_cols=176 Identities=10% Similarity=0.057 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
.|+..--..+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.- +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 4566666677888889999999999998764 26788888999999999999887653 56789889
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
..++.+......+. +.. .....+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 99998887765432 211 1233455566788999999999999999999876543 567778899999999875
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
.++..+.+... .+ .-| ...++..|.+.+.++++.-++..
T Consensus 148 -~~kl~e~l~~~--s~-~y~---~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 148 -PQKMREHLELF--WS-RVN---IPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp -HHHHHHHHHHH--ST-TSC---HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHhc--cc-cCC---HHHHHHHHHHcCChHHHHHHHHh
Confidence 34444433332 11 112 23445555555555555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.0013 Score=54.70 Aligned_cols=63 Identities=13% Similarity=-0.086 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
+|+.+..+|.+.|++++|+..++......+. +...+..+..+|...|++++|...|+...+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3455555666666666666666666655432 55556666666666666666666666665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.0014 Score=53.22 Aligned_cols=75 Identities=20% Similarity=0.072 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (613)
.+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|...|++..+ +.|+.......+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 467778888999999999999999988753 34778899999999999999999999999988 4465443333333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=4.2e-05 Score=76.61 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +.+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555666666666665555443321 12345556666666677777777777766654 4455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
|...|+..+|...|.+..... +|-..++..|...|.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 777777777777777666554 3556666666665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00079 Score=52.91 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VHTYGA 167 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ 167 (613)
+-.+...+.+.|++++|+..|+..++.+ +.+..++..+..+|.+.|++++|.+.++++++.. +.+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3445666777788888888888877765 5567777778888888888888888887766431 111 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
+...+...+++++|+..|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666666777777777777766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.0019 Score=53.57 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
|+.+..+|.+.|++++|...++.....+ |.++.+|..+..+|...|++++|+..|+...+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3334444555555555555555554443 334445555555555555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.0012 Score=51.88 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHH
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD-----EVFLSALIDF 313 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-----~~~~~~li~~ 313 (613)
+...+.+.|++++|...|.+..+.+ +.+..++..+..+|.+.|++++|++.++++.+.... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554 344555555555555556666555555554432110 00 1234444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (613)
+...+++++|...|.....
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5555555555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.40 E-value=0.0021 Score=52.18 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
..+..-...+.+.|++.+|+..|.+....-.. ++...... .. .....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK-----------------KK-------NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH-----------------HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh-----------------hh-------hHHHHHHhhH
Confidence 34556677788888888888888887753111 11111100 00 0113466778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
..+|.+.|++++|.+.++...+.+ +.+..+|..+..+|...|++++|+..|++..+ +.|+....
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 888899999999999999888764 45688899999999999999999999999887 35754443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0027 Score=52.93 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEV 305 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~ 305 (613)
.+..+...+.+.|++++|...++.+...+ +.+...|..++.+|.+.|+.++|++.|+++. +.|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 45556666667777777777777766665 5566667777777777777777777776653 246666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.0024 Score=52.88 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.|..+..+|.+.|++++|+..+....+..+. +...|..+..++...|++++|...|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4445555555666666666666665554432 4455555555566666666666666555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00015 Score=72.47 Aligned_cols=114 Identities=11% Similarity=-0.115 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
+...+..+...+.+.|+.+.|...+....... ...++..+...+...+++++|...|.+.... .+.+...|+.+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~L 192 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQL 192 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHH
Confidence 44455666666666677766666655544221 1234555566666667777777777666643 12334566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
...+...|+..+|...|.+..... +|.+.++..|...+.+
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666777777777777776666655 4556666666655543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.0026 Score=53.11 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+..+...+.+.|++++|...++.+.... +-+...|..++.+|.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34445555555555555555555555443 334555555555555555555555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.0023 Score=53.01 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|.+.|.....
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3345555556666666666666666665542 33455555666666666666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.23 E-value=0.0085 Score=49.25 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
|+.+..+|.+.|++++|...++...+.+ +.+..+|..+..++...|++++|...|..+...
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444455555666666666666555554 445555555556666666666666666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=0.00065 Score=54.74 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007193 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 423 (613)
+++|...|++..+.+ +.+..+|..+..+|...| .+++|.+.|++..+ +.|+..+|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH----
Confidence 345555555555432 233445555555544332 24556666666655 356555554444333
Q ss_pred CHHHHHHHHHHHHHcC
Q 007193 424 DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 424 ~~~~a~~~~~~m~~~g 439 (613)
..|.+++.++.+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 34455555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.15 E-value=0.01 Score=48.68 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
|+.+..+|.+.|++++|+..++......+. +...|..+..++...|++++|...|..+.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555566666666666555554332 4455555555555555666666555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.14 E-value=0.0013 Score=52.99 Aligned_cols=39 Identities=13% Similarity=-0.033 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (613)
-+.+.+++|+..|+...+.+ |.+...+..++.++...++
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~ 46 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQ 46 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhh
Confidence 35566888888888888877 7777776666666654433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.08 E-value=0.00068 Score=60.81 Aligned_cols=121 Identities=11% Similarity=0.041 Sum_probs=66.7
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 180 (613)
..+.|++++|+..++..++.. +.|...+..+...|+..|++++|.+.|+...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 345677777777777777764 556777777777777777777777777777665 333 3334333333333332222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
+..-...-...+-+++...+......+...|+.++|.+.+.++.+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 221111111111112223333344556666777777777766654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.04 E-value=0.00019 Score=64.51 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
|...++.|++++|+..+++..+.. |.+......++.++...|++++|.+.|+... +.+...+..+...+...+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 445677888999999998888887 7777777777777777777777777777643 22334444443333222222
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
+++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 211111000000011112233333445555667777777766666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.15 E-value=0.041 Score=44.22 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKY-----NIKGT-----PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
.|+.+..+|...|++++|...+++..+. ...++ ..+++.+..+|...|++++|+..|++..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566665555555544321 01111 1134445555666666666666665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.06 E-value=0.051 Score=43.63 Aligned_cols=53 Identities=11% Similarity=-0.030 Sum_probs=26.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGL-KAD----------CKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~-~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
+.+.|++++|++.|++..+... .|+ ...|+.+..+|.+.|++++|.+.+++..
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 4455666666666666554210 011 2345555555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.071 Score=38.44 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
+..+..+|.+.|++++|...++++.+.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.07 Score=38.46 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAG-----LKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
+...+.+.|++++|...|++..+.. ..++ ..+++.|..++.+.|++++|++.+++..+.
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444455555555555554443321 0111 234444555555555555555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.28 E-value=0.62 Score=35.58 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHhcC
Q 007193 250 VDRAREVYKMIHKYN 264 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~ 264 (613)
+++|.+.|++..+.+
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 344444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.08 E-value=0.77 Score=35.02 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHHcC
Q 007193 423 DDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 423 g~~~~a~~~~~~m~~~g 439 (613)
.+.++|.+++++..+.|
T Consensus 109 ~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 45555666665555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.62 E-value=1.4 Score=32.65 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=87.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
-.|..++..++..+..... +..-|+-+|--....-+-+-..++++.+-+. -| ..+++++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence 3466666666666665542 3344555544444444444444444333221 11 124555555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
.+-.+- .+....+..++.+.+.|+-+.-.++.+.+.+.+ +|++.....+..||.+.|+..++-+++.+.-+.|+
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 443332 445566777888888999988888888877754 78888888899999999999999999999888875
Q ss_pred C
Q 007193 441 I 441 (613)
Q Consensus 441 ~ 441 (613)
.
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.07 E-value=2.2 Score=31.61 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (613)
.+.-++.+.+.|+-+.-.++++.+.+. -.|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344445555555555555555554442 234455555555556666666666666555555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.16 E-value=3.2 Score=30.77 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007193 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 446 (613)
.++..|--....+++++.. .++|+.+|++..+.+ +.+. ..+-.+.-+|.+.|++++|++.++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 3556666666677776654 457888888877642 2233 3455666778889999999999988887 5676554
Q ss_pred HHHHHH
Q 007193 447 FKCIIG 452 (613)
Q Consensus 447 ~~~li~ 452 (613)
...+-.
T Consensus 109 A~~L~~ 114 (124)
T d2pqrb1 109 VGALKS 114 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.35 E-value=3.4 Score=28.87 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
+.-++.+-++.+....+.|++....+.+.||.+..++..|.++++-+... +.++...|..++.-.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34466677777777889999999999999999999999999999988742 334455788777653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.89 E-value=5.2 Score=29.54 Aligned_cols=52 Identities=4% Similarity=-0.032 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007193 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
.++|+.+|+.+...+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+ +.|+.
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 445666666655432 112 23444555566666666666666666665 34543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.33 E-value=18 Score=33.61 Aligned_cols=308 Identities=10% Similarity=0.027 Sum_probs=151.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-C-CHHHHHHHHHHHHcCCChHH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P-TLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~ 110 (613)
...+++|+.+++.++...+. +. |....+-..-+..-.......+...++++-+. | ....-..-+..+.+.++++.
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~--dy-pL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLK--DY-PLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGT--TS-TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHhhhc--CC-CCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 34557888888777777763 21 22221111111111122345566666666542 1 11122233455666666655
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---------------- 174 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---------------- 174 (613)
....+ ...+.+...-.....+....|+.++|.+....+-..|. ........+...+.+
T Consensus 91 ~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~ 164 (450)
T d1qsaa1 91 LLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (450)
T ss_dssp HHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 43322 12234555555566666677777777666655544431 122223333333333
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh--cCCh
Q 007193 175 --AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--AGQV 250 (613)
Q Consensus 175 --~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~--~g~~ 250 (613)
.|+...|..+...+.. .........+........+. ... .. ..++......+..++.+ ..+.
T Consensus 165 l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~---~~~---~~----~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 165 MKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVL---TFA---RT----TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHH---HHH---HH----SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHH---HHH---hc----CCCChhhhHHHHHHHHHHhccCh
Confidence 3444444443332211 11222233333322222211 111 11 12233333333333333 2467
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTI----AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
+.|..++........ .+..-+.. +.......+..+.+...+......+. +.......+......++...+...
T Consensus 231 ~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTW 307 (450)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHH
Confidence 778888777765432 22222222 22233345667777777777766543 444444455555667888888888
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
+..+.... .....-.--+..++...|+.+.|...|.....
T Consensus 308 ~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 308 LARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 87764321 22333445566778888999999888888764
|